Pregenerated sensors for ARPC1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029621Ensembl transcript IDs: ENSMUST00000031625.15, ENSMUST00000127694.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATaGTGGATGCCAGAGGCTCGCTCGGCTTCACATTATCCGGAGACC | + |
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Preference number: 1 (lower is better) Translates to: PHQHVNSRGAQSCSS*WMPEARSASHYPET Trigger: GGTCTCCGGATAATGTGAAGCCGAGCGAGCCTCTGGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| 3UTR-3UTR CCA 90 bp | TCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCCTCCTGTTCCTCATGCTaGATGCCAGAGGCTCGCTCG | + |
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Preference number: 2 (lower is better) Translates to: SPAREQQRRSVLFLMLDASCSSC*MPEARS Trigger: CGAGCGAGCCTCTGGCATCCAGCATGAGGAACAGGA...GGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCTGGATGCTCTGTTTTaGGACATCCAGTTTGGACAC | + |
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Preference number: 2 (lower is better) Translates to: PHQHVNSRGAQSCSSCWMLDALF*DIQFGH Trigger: GTGTCCAAACTGGATGTCCCAAAACAGAGCATCCAG...CATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| 3UTR-3UTR GCA 90 bp | TCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCCGGAACACACGCTAGTTaGTTCAGTGTGACAGTGTTT | + |
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Preference number: 2 (lower is better) Translates to: SPAREQQRRSVLFLMLDAGTHAS*FSVTVF Trigger: AAACACTGTCACACTGAAGCAACTAGCGTGTGTTCC...GGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| 3UTR-3UTR GCA 90 bp | ATGAAAGAAAAATCAAAACGAACCACTGCCGTCTCTAAATGCCACACGTCACCCCAGTCCTGTTCCTCATaGTGGATGCCAGAGGCTCGC | + |
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Preference number: 2 (lower is better) Translates to: MKEKSKRTTAVSKCHTSPQSCSS*WMPEAR Trigger: GCGAGCCTCTGGCATCCAGCATGAGGAACAGGACTG...GGGTGACGTGTGGCATTTAGAGACGGCAGTGGTTCGTTTTGATTTTTCTTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| 3UTR GCA 72 bp | ACGTCACCCACGACATCCACAGGAACACACGCTAGTTaGTTCAGTGTGACAGTGTTTCCCTGGGCCAGCGAT | + |
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Preference number: 3 (lower is better) Translates to: TSPTTSTGTHAS*FSVTVFPWASD Trigger: ATCGCTGGCCCAGGGAAACACTGTCACACTGAAGCAACTAGCGTGTGTTCCTGTGGATGTCGTGGGTGACGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| 3UTR CCA 72 bp | ACACACGCTAGTTGCTTCAGTGTGACAGTGTTTCCCTaGGCCAGCGATCCTCACCAGCACGTGAACAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: THASCFSVTVFP*ASDPHQHVNSR Trigger: TCTGCTGTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACTGAAGCAACTAGCGTGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| 3UTR GCA 72 bp | GGCAGGAACTCTGTTCTCAGAGTTGAAACCCCTAGTTaGCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: GRNSVLRVETPS*LEVSLPLAAFG Trigger: TCCAAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAACTAGGGGTTTCAACTCTGAGAACAGAGTTCCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| CDS-3UTR CCA 90 bp | TCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCCCCAGGGCGTGCTGGCTaGCTTCTCATCCACCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SPAREQQRRSVLFLMLDAPGRAG*LLIHLF Trigger: AAAGAGGTGGATGAGAAGCCAGCCAGCACGCCCTGG...GGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR TCA 90 bp | CAGTGTGACAGTGTTTCCCTGGGCCAGCGATCCTCACCAGCACGTGAACAGCAGTCCAGGCATGGCAGGTaGTTGGCTCCAGCAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: QCDSVSLGQRSSPAREQQSRHGR*LAPAET Trigger: AGTTTCTGCTGGAGCCAATCACCTGCCATGCCTGGA...CTGCTGTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR GCA 90 bp | CTTCAGTGTGACAGTGTTTCCCTGGGCCAGCGATCCTCACCAGCACGTGAACAGTGCCTGTGCCATGCCTaGCTGGATACTGCCATGCTC | + |
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Preference number: 4 (lower is better) Translates to: LQCDSVSLGQRSSPAREQCLCHA*LDTAML Trigger: GAGCATGGCAGTATCCAGGCAGGCATGGCACAGGCA...CTGTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACTGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| CDS-3UTR CCA 90 bp | TGCTTCAGTGTGACAGTGTTTCCCTGGGCCAGCGATCCTCACCAGCACGTGAACCCAGGGCGTGCTGGCTaGCTTCTCATCCACCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CFSVTVFPWASDPHQHVNPGRAG*LLIHLF Trigger: AAAGAGGTGGATGAGAAGCCAGCCAGCACGCCCTGG...GTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACTGAAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGACAGTGTTTCCCTGGGCCAGCGATCCTCACCAGCACGTGAACAGCAGATCCAGGCATGGCAGGTaGTTGGCTCCAGCAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: SVTVFPWASDPHQHVNSRSRHGR*LAPAET Trigger: AGTTTCTGCTGGAGCCAATCACCTGCCATGCCTGGA...TCTGCTGTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR TCA 90 bp | TCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCCGACAGACTGAACCTCTaGACTGCACACTTTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SPAREQQRRSVLFLMLDADRLNL*TAHFLR Trigger: CCTCAAAAAGTGTGCAGTTCAGAGGTTCAGTCTGTC...GGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| CDS-3UTR CCA 90 bp | GATCCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGCTGGATGCTCTGTTTTaGGACATCCAGTTTGGACAC | + |
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Preference number: 4 (lower is better) Translates to: DPHQHVNSRGAQSCSSCWLDALF*DIQFGH Trigger: GTGTCCAAACTGGATGTCCCAAAACAGAGCATCCAG...CCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031625.15 |
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| CDS-3UTR TCA 90 bp | GATCCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGTCTCATCCACCTCTTTaGTATAGGCAGAGAACACTC | + |
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Preference number: 4 (lower is better) Translates to: DPHQHVNSRGAQSCSSCWSHPPL*YRQRTL Trigger: GAGTGTTCTCTGCCTATATCAAAGAGGTGGATGAGA...CCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR TCA 90 bp | CCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGTTGATGATGACAGACTaGACCTCTGAACTGCACACT | + |
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Preference number: 4 (lower is better) Translates to: PHQHVNSRGAQSCSSCWMLMMTD*TSELHT Trigger: AGTGTGCAGTTCAGAGGTTCAGTCTGTCATCATCAA...CATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127694.8 |
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| CDS-3UTR CCA 90 bp | ATGAAAGAAAAATCAAAACGAACCACTGCCGTCTCTAAATGCCACACGTCACCCATCGGGCAGCAGTCATaGCCGGCAGCCACCACGCTG | + |
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Preference number: 4 (lower is better) Translates to: MKEKSKRTTAVSKCHTSPIGQQS*PAATTL Trigger: CAGCGTGGTGGCTGCCGGCCATGACTGCTGCCCGAT...GGGTGACGTGTGGCATTTAGAGACGGCAGTGGTTCGTTTTGATTTTTCTTTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031625.15 |
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| CDS-3UTR GCA 90 bp | CCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGATGCCAGATCAATACCTGTGATATaGCCATTATGTTCCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PAREQQRRSVLFLMLDARSIPVI*PLCSFS Trigger: GCTGAAGGAACATAATGGGCATATCACAGGTATTGA...TCTGGCATCCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR TCA 90 bp | TCACCCACGACATCCACAGGAACACACGCTAGTTGCTTCAGTGTGACAGTGTTTAGAACACTCTGCATTTaGAGTCACAGGAGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SPTTSTGTHASCFSVTVFRTLCI*SHRSLQ Trigger: CTGCAGGCTCCTGTGACTTCAAATGCAGAGTGTTCT...AAACACTGTCACACTGAAGCAACTAGCGTGTGTTCCTGTGGATGTCGTGGGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR GCA 90 bp | TGCTTCAGTGTGACAGTGTTTCCCTGGGCCAGCGATCCTCACCAGCACGTGAACTCAATACCTGTGATATaGCCATTATGTTCCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CFSVTVFPWASDPHQHVNSIPVI*PLCSFS Trigger: GCTGAAGGAACATAATGGGCATATCACAGGTATTGA...GTTCACGTGCTGGTGAGGATCGCTGGCCCAGGGAAACACTGTCACACTGAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR CCA 90 bp | TCACCCACGACATCCACAGGAACACACGCTAGTTGCTTCAGTGTGACAGTGTTTTTGGGACATCCAGTTTaGACACAAAGGTCAAACAGC | + |
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Preference number: 4 (lower is better) Translates to: SPTTSTGTHASCFSVTVFLGHPV*TQRSNS Trigger: GCTGTTTGACCTTTGTGTCCAAACTGGATGTCCCAA...AAACACTGTCACACTGAAGCAACTAGCGTGTGTTCCTGTGGATGTCGTGGGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031625.15 |
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| CDS-3UTR TCA 90 bp | ATGAAAGAAAAATCAAAACGAACCACTGCCGTCTCTAAATGCCACACGTCACCCAGAACACTCTGCATTTaGAGTCACAGGAGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: MKEKSKRTTAVSKCHTSPRTLCI*SHRSLQ Trigger: CTGCAGGCTCCTGTGACTTCAAATGCAGAGTGTTCT...GGGTGACGTGTGGCATTTAGAGACGGCAGTGGTTCGTTTTGATTTTTCTTTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR CAA 90 bp | GATCCTCACCAGCACGTGAACAGCAGAGGCGCTCAGTCCTGTTCCTCATGCTGGTGCACCTCATGGTTATaGGGGCTCAGGGCGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: DPHQHVNSRGAQSCSSCWCTSWL*GLRAIW Trigger: CCAGATCGCCCTGAGCCCCAATAACCATGAGGTGCA...CCAGCATGAGGAACAGGACTGAGCGCCTCTGCTGTTCACGTGCTGGTGAGGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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| CDS-3UTR CAA 90 bp | TCACCCACGACATCCACAGGAACACACGCTAGTTGCTTCAGTGTGACAGTGTTTTGCACCTCATGGTTATaGGGGCTCAGGGCGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: SPTTSTGTHASCFSVTVFCTSWL*GLRAIW Trigger: CCAGATCGCCCTGAGCCCCAATAACCATGAGGTGCA...AAACACTGTCACACTGAAGCAACTAGCGTGTGTTCCTGTGGATGTCGTGGGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031625.15 ENSMUST00000127694.8 |
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