RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARNTL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055116

Ensembl transcript IDs: ENSMUST00000047321.9, ENSMUST00000210074.2, ENSMUST00000210238.2, ENSMUST00000211770.2

Found 303 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCAAGCTATCCACAGCTAGCCCAAACTCAATGATGAGGAAACACTaGAGCAGGTTTAGTTCCACTTTGTCTGAAGTTACACATGGTAGA +
Preference number: 1 (lower is better)
Translates to: CKLSTASPNSMMRKH*SRFSSTLSEVTHGR
Trigger: TCTACCATGTGTAACTTCAGACAAAGTGGAACTAAACCTGCTCCAGTGTTTCCTCATCATTGAGTTTGGGCTAGCTGTGGATAGCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
3UTR TCA 90 bp GGAGCAGGTTTAGTTCCACTTTGTCTGAAGTTACACATGGTAGATTaGCTTGTATCAATGGCTCTGAGGTGGCTTTTATGGAGTCAGTAC +
Preference number: 1 (lower is better)
Translates to: GAGLVPLCLKLHMVD*LVSMALRWLLWSQY
Trigger: GTACTGACTCCATAAAAGCCACCTCAGAGCCATTGATACAAGTCAATCTACCATGTGTAACTTCAGACAAAGTGGAACTAAACCTGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
3UTR CAA 90 bp TGGAGCAGGTTTAGTTCCACTTTGTCTGAAGTTACACATGGTAGATaGACTTGTATCAATGGCTCTGAGGTGGCTTTTATGGAGTCAGTA +
Preference number: 2 (lower is better)
Translates to: WSRFSSTLSEVTHGR*TCINGSEVAFMESV
Trigger: TACTGACTCCATAAAAGCCACCTCAGAGCCATTGATACAAGTCAATCTACCATGTGTAACTTCAGACAAAGTGGAACTAAACCTGCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
3UTR CCA 72 bp TCCACAGCTAGCCCAAACTCAATGATGAGGAAACACTaGAGCAGGTTTAGTTCCACTTTGTCTGAAGTTACA +
Preference number: 3 (lower is better)
Translates to: STASPNSMMRKH*SRFSSTLSEVT
Trigger: TGTAACTTCAGACAAAGTGGAACTAAACCTGCTCCAGTGTTTCCTCATCATTGAGTTTGGGCTAGCTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGGGGAGGCGTACTTGTaGTGTTCAGCGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVGEAYL*CSAGWS
Trigger: GCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGGCTCTGGTTCCCCCTaGAATGCCTGGGACAGTGGG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVGSGSP*NAWDSG
Trigger: CCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAGGGGAGGCGTACTTGTaGTGTTCAGCGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLGEAYL*CSAGWS
Trigger: GCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCC...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGGCTCTGGTTCCCCCTaGAATGCCTGGGACAGTGGG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKGSGSP*NAWDSG
Trigger: CCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTCCTGCTCCGGCTCTaGTTCCCCCTGGAATGCCTG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVFLLRL*FPLECL
Trigger: CAGGCATTCCAGGGGGAACCAGAGCCGGAGCAGGAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACCTGGGACAGTGGGATaGGTCCTCTTTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLPGTVG*VLFGPP
Trigger: AGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGGGGAGGCGTACTTGTaGTGTTCAGCGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFGEAYL*CSAGWS
Trigger: GCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGGGGAGGCGTACTTGTaGTGTTCAGCGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANGEAYL*CSAGWS
Trigger: GCTCCAGCCCGCTGAACATCACAAGTACGCCTCCCC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTGCAGTCCACACCACTaGTGCCCAGGGAACCGGAGA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHCSPHH*CPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVSPWNA*DSGMSP
Trigger: AGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGGCTCTGGTTCCCCCTaGAATGCCTGGGACAGTGGG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANGSGSP*NAWDSG
Trigger: CCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHLQRGS*GCSPRC
Trigger: ACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLQRGS*GCSPRC
Trigger: ACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCCTGGGACAGTGGGATaGGTCCTCTTTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFPGTVG*VLFGPP
Trigger: AGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCTGGGACAGTGGGATaGGTCCTCTTTGGGCCACCT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPGTVG*VLFGPP
Trigger: AGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATACCCTGGGGTCTCCTaGGCCTGCCCTGGTAATAGT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLYPGVS*ACPGNS
Trigger: ACTATTACCAGGGCAGGCTCAGGAGACCCCAGGGTA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATACCCTGGGGTCTCCTaGGCCTGCCCTGGTAATAGT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKYPGVS*ACPGNS
Trigger: ACTATTACCAGGGCAGGCTCAGGAGACCCCAGGGTA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACAGTCCACACCACTGGTaGCCAGGGAACCGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHSPHHW*PGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGACCCAGCCCCGCATCTaGTTCCAAGAGGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVTQPRI*FQEAHD
Trigger: ATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTGCAGTCCACACCACTaGTGCCCAGGGAACCGGAGA +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFCSPHH*CPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTGCAGTCCACACCACTaGTGCCCAGGGAACCGGAGA +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANCSPHH*CPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGGGATGAGTCCTCTTTaGGCCACCTTCTCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKGMSPL*ATFSRG
Trigger: CCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACGGGATGAGTCCTCTTTaGGCCACCTTCTCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHGMSPL*ATFSRG
Trigger: CCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCC...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLSPWNA*DSGMSP
Trigger: AGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKSPWNA*DSGMSP
Trigger: AGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTTCCTGCTCCGGCTCTaGTTCCCCCTGGAATGCCTG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANFLLRL*FPLECL
Trigger: CAGGCATTCCAGGGGGAACCAGAGCCGGAGCAGGAA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGGCTGGAGCCACAGCTaGAAGGCGATGACCCTCTTA +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKGWSHS*KAMTLL
Trigger: TAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACGGCTGGAGCCACAGCTaGAAGGCGATGACCCTCTTA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHGWSHS*KAMTLL
Trigger: TAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCC...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACGCCTCTTTTCAATCTaGCTGTGGGCCTCCCTTGCA +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLRLFSI*LWASLA
Trigger: TGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLQRGS*GCSPRC
Trigger: ACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGT +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFLQRGS*GCSPRC
Trigger: ACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTACCCTGGGGTCTCCTaGGCCTGCCCTGGTAATAGT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANYPGVS*ACPGNS
Trigger: ACTATTACCAGGGCAGGCTCAGGAGACCCCAGGGTA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTAGTCCACACCACTGGTaGCCAGGGAACCGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFSPHHW*PGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATAGTCCACACCACTGGTaGCCAGGGAACCGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANSPHHW*PGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGGTAGTCAGTGGCACTaGCTTTCCTCTTGCGATTGC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVGSQWH*LSSCDC
Trigger: GCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACACCCAGCCCCGCATCTaGTTCCAAGAGGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHTQPRI*FQEAHD
Trigger: ATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGGGATGAGTCCTCTTTaGGCCACCTTCTCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFGMSPL*ATFSRG
Trigger: CCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGGGATGAGTCCTCTTTaGGCCACCTTCTCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANGMSPL*ATFSRG
Trigger: CCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANSPWNA*DSGMSP
Trigger: AGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGGCTGGAGCCACAGCTaGAAGGCGATGACCCTCTTA +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANGWSHS*KAMTLL
Trigger: TAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCGCCTCTTTTCAATCTaGCTGTGGGCCTCCCTTGCA +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANRLFSI*LWASLA
Trigger: TGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCGCCTCTTTTCAATCTaGCTGTGGGCCTCCCTTGCA +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFRLFSI*LWASLA
Trigger: TGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAACAGCTGGAAGGCGATaGCCCTCTTATCCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKTAGRR*PSYPVD
Trigger: ATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACACAGCTGGAAGGCGATaGCCCTCTTATCCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHTAGRR*PSYPVD
Trigger: ATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACGGTAGTCAGTGGCACTaGCTTTCCTCTTGCGATTGC +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHGSQWH*LSSCDC
Trigger: GCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACC...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTGCCTGTGACATTCTaGGAGGTGTCCTATGTCGTC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVLPVTF*EVSYVV
Trigger: GACGACATAGGACACCTCGCAGAATGTCACAGGCAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGATGACAGCCATTGCTaGCTCATCGTTACTGGGACT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVDDSHC*LIVTGT
Trigger: AGTCCCAGTAACGATGAGGCAGCAATGGCTGTCATC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGCATGATGACAGCCATTaGTGCCTCATCGTTACTGGG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVHDDSH*CLIVTG
Trigger: CCCAGTAACGATGAGGCAGCAATGGCTGTCATCATG...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTACCCAGCCCCGCATCTaGTTCCAAGAGGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFTQPRI*FQEAHD
Trigger: ATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACCCCATCTTCGTGGGTaGCCAGCTTTTCAAATAGCC +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLPHLRG*PAFQIA
Trigger: GGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACCAGCCCCATCTTCGTaGGTGGCCAGCTTTTCAAAT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKPAPSS*VASFSN
Trigger: ATTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCCAGCCCCATCTTCGTaGGTGGCCAGCTTTTCAAAT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHPAPSS*VASFSN
Trigger: ATTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAAATCTTCTTGCCTCCTaGAGAAGAGGCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLNLLAS*RRGIRG
Trigger: CCCCCTGATGCCTCTTCTCCAGGAGGCAAGAAGATT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAAATCTTCTTGCCTCCTaGAGAAGAGGCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKNLLAS*RRGIRG
Trigger: CCCCCTGATGCCTCTTCTCCAGGAGGCAAGAAGATT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGAAGTCGCTGATGGTTaGGGAAATGTCCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVEVADG*GNVHSL
Trigger: CAGAGAATGGACATTTCCTCAACCATCAGCGACTTC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACCTCCCTTGCATTCTTaGTCCTTCCTTGGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKPPLHS*SFLGVL
Trigger: CAGAACACCAAGGAAGGATCAAGAATGCAAGGGAGG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCCTCCCTTGCATTCTTaGTCCTTCCTTGGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHPPLHS*SFLGVL
Trigger: CAGAACACCAAGGAAGGATCAAGAATGCAAGGGAGG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTGTAAAACTTGCCTGTaGCATTCTGCGAGGTGTCCT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVCKTCL*HSARCP
Trigger: AGGACACCTCGCAGAATGTCACAGGCAAGTTTTACA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTCCTGTGGATTTCCATaGTTTCCTCCGCGATCATTC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVSCGFP*FPPRSF
Trigger: GAATGATCGCGGAGGAAATCATGGAAATCCACAGGA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATACAGCTGGAAGGCGATaGCCCTCTTATCCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANTAGRR*PSYPVD
Trigger: ATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTGCCTGTGACATTCTaGGAGGTGTCCTATGTCGTC +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLPVTF*EVSYVV
Trigger: GACGACATAGGACACCTCGCAGAATGTCACAGGCAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTGCCTGTGACATTCTaGGAGGTGTCCTATGTCGTC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLPVTF*EVSYVV
Trigger: GACGACATAGGACACCTCGCAGAATGTCACAGGCAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGATGACAGCCATTGCTaGCTCATCGTTACTGGGACT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKDDSHC*LIVTGT
Trigger: AGTCCCAGTAACGATGAGGCAGCAATGGCTGTCATC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACATGATGACAGCCATTaGTGCCTCATCGTTACTGGG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKHDDSH*CLIVTG
Trigger: CCCAGTAACGATGAGGCAGCAATGGCTGTCATCATG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGTTTGCTTCTGTGTATaGGTTGGTGGCACCTCTCAA +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVVCFCV*VGGTSQ
Trigger: TTGAGAGGTGCCACCAACCCATACACAGAAGCAAAC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCCCATCTTCGTGGGTaGCCAGCTTTTCAAATAGCC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPHLRG*PAFQIA
Trigger: GGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCCCCATCTTCGTGGGTaGCCAGCTTTTCAAATAGCC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFPHLRG*PAFQIA
Trigger: GGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATATTTCCCCGTTCGCTaGTTGTGGAACCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKYFPVR*LWNHVR
Trigger: TCGCACATGGTTCCACAACCAGCGAACGGGGAAATA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATAATCTTCTTGCCTCCTaGAGAAGAGGCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANNLLAS*RRGIRG
Trigger: CCCCCTGATGCCTCTTCTCCAGGAGGCAAGAAGATT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGCTGCCTCATCGTTACTaGGACTACTTGATCCTTGGT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVLPHRY*DYLILG
Trigger: ACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAG...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGAAGTCGCTGATGGTTaGGGAAATGTCCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKEVADG*GNVHSL
Trigger: CAGAGAATGGACATTTCCTCAACCATCAGCGACTTC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCTCCCTTGCATTCTTaGTCCTTCCTTGGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPPLHS*SFLGVL
Trigger: CAGAACACCAAGGAAGGATCAAGAATGCAAGGGAGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACCATCCTTAGCACGGTaGGTTTATCTAACTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKPSLAR*VYLTSW
Trigger: CCAGGAAGTTAGATAAACTCACCGTGCTAAGGATGG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCCATCCTTAGCACGGTaGGTTTATCTAACTTCCTGG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHPSLAR*VYLTSW
Trigger: CCAGGAAGTTAGATAAACTCACCGTGCTAAGGATGG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGAAAGTTTTCATGTGCTaGACAGCCATCCTTAGCACG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVKVFMC*TAILST
Trigger: CGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGATCTTCCACCTTTACTaGAGGCCTGTTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVIFHLY*RPVALH
Trigger: ATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGAT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATGTAAAACTTGCCTGTaGCATTCTGCGAGGTGTCCT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKCKTCL*HSARCP
Trigger: AGGACACCTCGCAGAATGTCACAGGCAAGTTTTACA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATGTAAAACTTGCCTGTaGCATTCTGCGAGGTGTCCT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLCKTCL*HSARCP
Trigger: AGGACACCTCGCAGAATGTCACAGGCAAGTTTTACA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTCCTGTGGATTTCCATaGTTTCCTCCGCGATCATTC +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHSCGFP*FPPRSF
Trigger: GAATGATCGCGGAGGAAATCATGGAAATCCACAGGA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATCCTGTGGATTTCCATaGTTTCCTCCGCGATCATTC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKSCGFP*FPPRSF
Trigger: GAATGATCGCGGAGGAAATCATGGAAATCCACAGGA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGATGACAGCCATTGCTaGCTCATCGTTACTGGGACT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANDDSHC*LIVTGT
Trigger: AGTCCCAGTAACGATGAGGCAGCAATGGCTGTCATC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCATGATGACAGCCATTaGTGCCTCATCGTTACTGGG +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFHDDSH*CLIVTG
Trigger: CCCAGTAACGATGAGGCAGCAATGGCTGTCATCATG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCTTGGTAGTCAGTaGCACTGCCTTTCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHFLGSQ*HCLSSC
Trigger: GCAAGAGGAAAGGCAGTGCCACTGACTACCAAGAAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTTCTTGGTAGTCAGTaGCACTGCCTTTCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKFLGSQ*HCLSSC
Trigger: GCAAGAGGAAAGGCAGTGCCACTGACTACCAAGAAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGCTTCTGTGTATGGGTTaGTGGCACCTCTCAAAGTTT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVLLCMG*WHLSKF
Trigger: AAACTTTGAGAGGTGCCACCAACCCATACACAGAAG...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACGTTTGCTTCTGTGTATaGGTTGGTGGCACCTCTCAA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHVCFCV*VGGTSQ
Trigger: TTGAGAGGTGCCACCAACCCATACACAGAAGCAAAC...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTATTTCCCCGTTCGCTaGTTGTGGAACCATGTGCGA +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANYFPVR*LWNHVR
Trigger: TCGCACATGGTTCCACAACCAGCGAACGGGGAAATA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCGCCTTCCAGGACATTaGCTAAAACAACAGTGTTGG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHRLPGH*LKQQCW
Trigger: CCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACGCCTTCCAGGACATTaGCTAAAACAACAGTGTTGG +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLRLPGH*LKQQCW
Trigger: CCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACTGGTAATAGTCCAGTaGAAGGAATGTCTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLVIVQ*KECLES
Trigger: GGACTCCAGACATTCCTTCCACTGGACTATTACCAG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACTGCCTCATCGTTACTaGGACTACTTGATCCTTGGT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLPHRY*DYLILG
Trigger: ACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCTGCCTCATCGTTACTaGGACTACTTGATCCTTGGT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHLPHRY*DYLILG
Trigger: ACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCAAGTTGGTAGTCAGTaGCACTGCCTTTCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFQVGSQ*HCLSSC
Trigger: GCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCTAACTGGTAGTCAGTaGCACTGCCTTTCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLTGSQ*HCLSSC
Trigger: GCAAGAGGAAAGGCAGTGCCACTGACTACCAGTTAG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGAAGTCGCTGATGGTTaGGGAAATGTCCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFEVADG*GNVHSL
Trigger: CAGAGAATGGACATTTCCTCAACCATCAGCGACTTC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCATCCTTAGCACGGTaGGTTTATCTAACTTCCTGG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPSLAR*VYLTSW
Trigger: CCAGGAAGTTAGATAAACTCACCGTGCTAAGGATGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACAAAGTTTTCATGTGCTaGACAGCCATCCTTAGCACG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHKVFMC*TAILST
Trigger: CGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAAAAGTTTTCATGTGCTaGACAGCCATCCTTAGCACG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKKVFMC*TAILST
Trigger: CGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACATCCATCTGCTGCCCTaGGAATTAGGTGTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHIHLLP*ELGVSV
Trigger: AACTGAAACACCTAATTCTCAGGGCAGCAGATGGAT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATCCATCTGCTGCCCTaGGAATTAGGTGTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLIHLLP*ELGVSV
Trigger: AACTGAAACACCTAATTCTCAGGGCAGCAGATGGAT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATCTTCCACCTTTACTaGAGGCCTGTTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLIFHLY*RPVALH
Trigger: ATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGAT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAATCTTCCACCTTTACTaGAGGCCTGTTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKIFHLY*RPVALH
Trigger: ATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGAT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACATCTTCCACCTTTACTaGAGGCCTGTTGCACTTCAT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHIFHLY*RPVALH
Trigger: ATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGAT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTCCTGTGGATTTCCATaGTTTCCTCCGCGATCATTC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFSCGFP*FPPRSF
Trigger: GAATGATCGCGGAGGAAATCATGGAAATCCACAGGA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGTTACTGGGACTACTTaGTCCTTGGTCGTTATCTAT +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVVTGTT*SLVVIY
Trigger: ATAGATAACGACCAAGGATCAAGTAGTCCCAGTAAC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCTGTGCTGTGGATTGTaGAGAAGCTTTTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHLCCGL*RSFFDL
Trigger: CAGATCGAAAAAGCTTCTGCACAATCCACAGCACAG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACTGTGCTGTGGATTGTaGAGAAGCTTTTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLCCGL*RSFFDL
Trigger: CAGATCGAAAAAGCTTCTGCACAATCCACAGCACAG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACTGTGCTGTGGATTGTaGAGAAGCTTTTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLCCGL*RSFFDL
Trigger: CAGATCGAAAAAGCTTCTGCACAATCCACAGCACAG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTTTCAAATAGCCTGTaGTGTGGATTGTGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVFSNSL*CGLCRS
Trigger: GCTTCTGCACAATCCACAGCACAGGCTATTTGAAAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTATCTATCATATCGATaGCTATGTGGGGGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVYLSYR*LCGGSH
Trigger: GTGAGAACCCCCACATAGGCATCGATATGATAGATA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACTTCTGTGTATGGGTTaGTGGCACCTCTCAAAGTTT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLLCMG*WHLSKF
Trigger: AAACTTTGAGAGGTGCCACCAACCCATACACAGAAG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACTTCTGTGTATGGGTTaGTGGCACCTCTCAAAGTTT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLLCMG*WHLSKF
Trigger: AAACTTTGAGAGGTGCCACCAACCCATACACAGAAG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGTTTGCTTCTGTGTATaGGTTGGTGGCACCTCTCAA +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFVCFCV*VGGTSQ
Trigger: TTGAGAGGTGCCACCAACCCATACACAGAAGCAAAC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCGCCTTCCAGGACATTaGCTAAAACAACAGTGTTGG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANRLPGH*LKQQCW
Trigger: CCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGACCCTCTTATCCTGTaGATTTCCATGATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKDPLIL*ISMISS
Trigger: GGAGGAAATCATGGAAATCCACAGGATAAGAGGGTC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCTGGTAATAGTCCAGTaGAAGGAATGTCTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLVIVQ*KECLES
Trigger: GGACTCCAGACATTCCTTCCACTGGACTATTACCAG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCTGGTAATAGTCCAGTaGAAGGAATGTCTGGAGTCC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFLVIVQ*KECLES
Trigger: GGACTCCAGACATTCCTTCCACTGGACTATTACCAG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGATATCGATGCCTATGTaGGGGTTCTCACCAAGAATA +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVISMPM*GFSPRI
Trigger: TATTCTTGGTGAGAACCCCCACATAGGCATCGATAT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATATTCTAACCTTCCATaGGGGTCATCTTTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLYSNLP*GSSLSV
Trigger: CACAGACAAAGATGACCCTCATGGAAGGTTAGAATA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATAAAGTTTTCATGTGCTaGACAGCCATCCTTAGCACG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANKVFMC*TAILST
Trigger: CGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTATCCATCTGCTGCCCTaGGAATTAGGTGTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFIHLLP*ELGVSV
Trigger: AACTGAAACACCTAATTCTCAGGGCAGCAGATGGAT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATATCCATCTGCTGCCCTaGGAATTAGGTGTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANIHLLP*ELGVSV
Trigger: AACTGAAACACCTAATTCTCAGGGCAGCAGATGGAT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGATAGCTGTCGCCCTCTaGTCTACAAAAACAAATTTC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVIAVAL*STKTNF
Trigger: GAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTAT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGTTACTGGGACTACTTaGTCCTTGGTCGTTATCTAT +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKVTGTT*SLVVIY
Trigger: ATAGATAACGACCAAGGATCAAGTAGTCCCAGTAAC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTACTGAAGGCCTGTTaGACTTCATTCTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVLLKAC*TSFYRR
Trigger: TCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCTGTGCTGTGGATTGTaGAGAAGCTTTTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLCCGL*RSFFDL
Trigger: CAGATCGAAAAAGCTTCTGCACAATCCACAGCACAG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTCAAATAGCCTGTaGTGTGGATTGTGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHFSNSL*CGLCRS
Trigger: GCTTCTGCACAATCCACAGCACAGGCTATTTGAAAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTTTCAAATAGCCTGTaGTGTGGATTGTGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKFSNSL*CGLCRS
Trigger: GCTTCTGCACAATCCACAGCACAGGCTATTTGAAAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCATTTAGAATCTTCTTaGCTCCTGGAGAAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHHLESS*LLEKRH
Trigger: ATGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACATTTAGAATCTTCTTaGCTCCTGGAGAAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLHLESS*LLEKRH
Trigger: ATGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATATCTATCATATCGATaGCTATGTGGGGGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKYLSYR*LCGGSH
Trigger: GTGAGAACCCCCACATAGGCATCGATATGATAGATA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATATCTATCATATCGATaGCTATGTGGGGGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLYLSYR*LCGGSH
Trigger: GTGAGAACCCCCACATAGGCATCGATATGATAGATA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGACCCTCTTATCCTGTaGATTTCCATGATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANDPLIL*ISMISS
Trigger: GGAGGAAATCATGGAAATCCACAGGATAAGAGGGTC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGACCCTCTTATCCTGTaGATTTCCATGATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFDPLIL*ISMISS
Trigger: GGAGGAAATCATGGAAATCCACAGGATAAGAGGGTC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACATATCGATGCCTATGTaGGGGTTCTCACCAAGAATA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHISMPM*GFSPRI
Trigger: TATTCTTGGTGAGAACCCCCACATAGGCATCGATAT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTATTCTAACCTTCCATaGGGGTCATCTTTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFYSNLP*GSSLSV
Trigger: CACAGACAAAGATGACCCTCATGGAAGGTTAGAATA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGAAGCCAATTCATCAATaGAACTGTTCATTTTGTCCC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVKPIHQ*NCSFCP
Trigger: GGGACAAAATGAACAGTTTCATTGATGAATTGGCTT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAATAGCTGTCGCCCTCTaGTCTACAAAAACAAATTTC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKIAVAL*STKTNF
Trigger: GAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTAT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTTACTGGGACTACTTaGTCCTTGGTCGTTATCTAT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANVTGTT*SLVVIY
Trigger: ATAGATAACGACCAAGGATCAAGTAGTCCCAGTAAC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTACTGAAGGCCTGTTaGACTTCATTCTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLLKAC*TSFYRR
Trigger: TCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTACTGAAGGCCTGTTaGACTTCATTCTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLLKAC*TSFYRR
Trigger: TCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCATTTAGAATCTTCTTaGCTCCTGGAGAAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFHLESS*LLEKRH
Trigger: ATGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCATTTAGAATCTTCTTaGCTCCTGGAGAAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANHLESS*LLEKRH
Trigger: ATGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR GCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTATCTATCATATCGATaGCTATGTGGGGGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANYLSYR*LCGGSH
Trigger: GTGAGAACCCCCACATAGGCATCGATATGATAGATA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTCTTGATCCTTCCTTaGTGTTCTGCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVFLILP*CSAYSN
Trigger: GTTAGAATATGCAGAACACCAAGGAAGGATCAAGAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGTTTATCTAACTTCCTaGACATTGCATTGCATGTTG +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVVYLTS*TLHCML
Trigger: CAACATGCAATGCAATGTCCAGGAAGTTAGATAAAC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATATAGCTGTCGCCCTCTaGTCTACAAAAACAAATTTC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANIAVAL*STKTNF
Trigger: GAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTAT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAAACAACAGTGTTGGTTaGGACAATGTATTCAACTTC +
Preference number: 4 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLNNSVG*DNVFNF
Trigger: GAAGTTGAATACATTGTCTCAACCAACACTGTTGTT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACAACAACAGTGTTGGTTaGGACAATGTATTCAACTTC +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHNNSVG*DNVFNF
Trigger: GAAGTTGAATACATTGTCTCAACCAACACTGTTGTT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTCTTGATCCTTCCTTaGTGTTCTGCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKFLILP*CSAYSN
Trigger: GTTAGAATATGCAGAACACCAAGGAAGGATCAAGAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGTTTATCTAACTTCCTaGACATTGCATTGCATGTTG +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKVYLTS*TLHCML
Trigger: CAACATGCAATGCAATGTCCAGGAAGTTAGATAAAC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTTGGCAATATCTTTTaGATGCAGGTAGTCAAACAA +
Preference number: 4 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVFGNIF*MQVVKQ
Trigger: TTGTTTGACTACCTGCATCCAAAAGATATTGCCAAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTAAGCCAATTCATCAATaGAACTGTTCATTTTGTCCC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFKPIHQ*NCSFCP
Trigger: GGGACAAAATGAACAGTTTCATTGATGAATTGGCTT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATAAGCCAATTCATCAATaGAACTGTTCATTTTGTCCC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANKPIHQ*NCSFCP
Trigger: GGGACAAAATGAACAGTTTCATTGATGAATTGGCTT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR TCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATAACAACAGTGTTGGTTaGGACAATGTATTCAACTTC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANNNSVG*DNVFNF
Trigger: GAAGTTGAATACATTGTCTCAACCAACACTGTTGTT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTTCTTGATCCTTCCTTaGTGTTCTGCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFFLILP*CSAYSN
Trigger: GTTAGAATATGCAGAACACCAAGGAAGGATCAAGAA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTTCTTGATCCTTCCTTaGTGTTCTGCATATTCTAAC +
Preference number: 4 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANFLILP*CSAYSN
Trigger: GTTAGAATATGCAGAACACCAAGGAAGGATCAAGAA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGTTTATCTAACTTCCTaGACATTGCATTGCATGTTG +
Preference number: 4 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFVYLTS*TLHCML
Trigger: CAACATGCAATGCAATGTCCAGGAAGTTAGATAAAC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTTGGCAATATCTTTTaGATGCAGGTAGTCAAACAA +
Preference number: 4 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKFGNIF*MQVVKQ
Trigger: TTGTTTGACTACCTGCATCCAAAAGATATTGCCAAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CCA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGGCAATATCTTTTaGATGCAGGTAGTCAAACAA +
Preference number: 4 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHFGNIF*MQVVKQ
Trigger: TTGTTTGACTACCTGCATCCAAAAGATATTGCCAAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 90 bp AGTCAGTGGCACTGCCTTTCCTCTTGCGATTGCAGTCCACACCACTaGTGCCCAGGGAACCGGAGAGTAGGTCGGTGGGGCCCGGAGACA +
Preference number: 5 (lower is better)
Translates to: SQWHCLSSCDCSPHH*CPGNRRVGRWGPET
Trigger: TGTCTCCGGGCCCCACCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 90 bp GCGCCCGATTGCAACGAGGCAGCTGAGGTTGCAGCCCTCGTTGTCTaGCTCATTGTCTTCGTCCAGCCCCATCTTCGTGGGTGGCCAGCT +
Preference number: 5 (lower is better)
Translates to: APDCNEAAEVAALVV*LIVFVQPHLRGWPA
Trigger: AGCTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 90 bp GTGGAACCATGTGCGAGTGCAGGCGCCCGATTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGTCTGGCTCATTGTCTTCGTCCAGCC +
Preference number: 5 (lower is better)
Translates to: VEPCASAGARLQRGS*GCSPRCLAHCLRPA
Trigger: GGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp CCCGTTCGCTGGTTGTGGAACCATGTGCGAGTGCAGGCGCCCGATTaGAACGAGGCAGCTGAGGTTGCAGCCCTCGTTGTCTGGCTCATT +
Preference number: 5 (lower is better)
Translates to: PVRWLWNHVRVQAPD*NEAAEVAALVVWLI
Trigger: AATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp TTCACCCGTATTTCCCCGTTCGCTGGTTGTGGAACCATGTGCGAGTaGAGGCGCCCGATTGCAACGAGGCAGCTGAGGTTGCAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: FTRISPFAGCGTMCE*RRPIATRQLRLQPS
Trigger: CGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 90 bp TCGACCTATTTTTCCTGCTCCGGCTCTGGTTCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCTCTTTGGGCCACCTTCTCCAGAGGG +
Preference number: 5 (lower is better)
Translates to: STYFSCSGSGSPWNA*DSGMSPLWATFSRG
Trigger: CCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCCGGAGCAGGAAAAATAGGTCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp CCATACTTTCTTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTAGGTCGG +
Preference number: 5 (lower is better)
Translates to: PYFLGSQWHCLSSCD*SPHHWCPGNRRVGR
Trigger: CCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAAGAAAGTATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS GCA 90 bp ATAGATTTCACCCGTATTTCCCCGTTCGCTGGTTGTGGAACCATGTaGGAGTGCAGGCGCCCGATTGCAACGAGGCAGCTGAGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: IDFTRISPFAGCGTM*ECRRPIATRQLRLQ
Trigger: CTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp CCATGGCAAGTCACTAAAGTCAACGGGGCCACCCAGCCCCGCATCTaGTTCCAAGAGGCTCATGATGACAGCCATTGCTGCCTCATCGTT +
Preference number: 5 (lower is better)
Translates to: PWQVTKVNGATQPRI*FQEAHDDSHCCLIV
Trigger: AACGATGAGGCAGCAATGGCTGTCATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGTGGCCCCGTTGACTTTAGTGACTTGCCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp AGTCATCAAGTTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTAGGTCGG +
Preference number: 5 (lower is better)
Translates to: SHQVGSQWHCLSSCD*SPHHWCPGNRRVGR
Trigger: CCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS GCA 90 bp CATATTCTAACTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTAGGTCGG +
Preference number: 5 (lower is better)
Translates to: HILTGSQWHCLSSCD*SPHHWCPGNRRVGR
Trigger: CCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAGTTAGAATATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS CCA 90 bp AACGTACTCCATAGATTTCACCCGTATTTCCCCGTTCGCTGGTTGTaGAACCATGTGCGAGTGCAGGCGCCCGATTGCAACGAGGCAGCT +
Preference number: 5 (lower is better)
Translates to: NVLHRFHPYFPVRWL*NHVRVQAPDCNEAA
Trigger: AGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTACGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp CTGTGTCCATACTTTCTTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTA +
Preference number: 5 (lower is better)
Translates to: LCPYFLGSQWHCLSS*DCSPHHWCPGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAAGAAAGTATGGACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS CCA 90 bp AGCCCTCGTTGTCTGGCTCATTGTCTTCGTCCAGCCCCATCTTCGTaGGTGGCCAGCTTTTCAAATAGCCTGTGCTGTGGATTGTGCAGA +
Preference number: 5 (lower is better)
Translates to: SPRCLAHCLRPAPSS*VASFSNSLCCGLCR
Trigger: TCTGCACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 90 bp TCGAGAAACGTACTCCATAGATTTCACCCGTATTTCCCCGTTCGCTaGTTGTGGAACCATGTGCGAGTGCAGGCGCCCGATTGCAACGAG +
Preference number: 5 (lower is better)
Translates to: SRNVLHRFHPYFPVR*LWNHVRVQAPDCNE
Trigger: CTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTACGTTTCTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp AAGCAAAGTCATCAAGTTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTA +
Preference number: 5 (lower is better)
Translates to: KQSHQVGSQWHCLSS*DCSPHHWCPGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACTTTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS GCA 90 bp GTTCTGCATATTCTAACTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAACCGGAGAGTA +
Preference number: 5 (lower is better)
Translates to: VLHILTGSQWHCLSS*DCSPHHWCPGNRRV
Trigger: TACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAGTTAGAATATGCAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS CCA 90 bp AGGGATACCCTGGGGTCTCCTGAGCCTGCCCTGGTAATAGTCCAGTaGAAGGAATGTCTGGAGTCCCTCCATTTAGAATCTTCTTGCCTC +
Preference number: 5 (lower is better)
Translates to: RDTLGSPEPALVIVQ*KECLESLHLESSCL
Trigger: GAGGCAAGAAGATTCTAAATGGAGGGACTCCAGACATTCCTTCCACTGGACTATTACCAGGGCAGGCTCAGGAGACCCCAGGGTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp TACTTTCTTCAAAAGCAAAGTCATCAAGTTGGTAGTCAGTGGCACTaGCTTTCCTCTTGCGATTGCAGTCCACACCACTGGTGCCCAGGG +
Preference number: 5 (lower is better)
Translates to: YFLQKQSHQVGSQWH*LSSCDCSPHHWCPG
Trigger: CCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACTTTGCTTTTGAAGAAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAACGAGGCAGCTGAGGTaGCAGCCCTCGTTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLTRQLR*QPSLSG
Trigger: GCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAACGAGGCAGCTGAGGTaGCAGCCCTCGTTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKTRQLR*QPSLSG
Trigger: GCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACACGAGGCAGCTGAGGTaGCAGCCCTCGTTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHTRQLR*QPSLSG
Trigger: GCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTAGCTGCGGGAAGGTaGGGTCCCCGCCTTCCAGGA +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHLAAGR*GPRLPG
Trigger: TCCTGGAAGGCGGGGACCCAACCTTCCCGCAGCTAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTAGCTGCGGGAAGGTaGGGTCCCCGCCTTCCAGGA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLAAGR*GPRLPG
Trigger: TCCTGGAAGGCGGGGACCCAACCTTCCCGCAGCTAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 90 bp GCTCATGATGACAGCCATTGCTGCCTCATCGTTACTGGGACTACTTaGTCCTTGGTCGTTATCTATCATATCGATGCCTATGTGGGGGTT +
Preference number: 5 (lower is better)
Translates to: AHDDSHCCLIVTGTT*SLVVIYHIDAYVGV
Trigger: AACCCCCACATAGGCATCGATATGATAGATAACGACCAAGGATCAAGTAGTCCCAGTAACGATGAGGCAGCAATGGCTGTCATCATGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 90 bp TGTCCATACTTTCTTCAAAAGCAAAGTCATCAAGTTGGTAGTCAGTaGCACTGCCTTTCCTCTTGCGATTGCAGTCCACACCACTGGTGC +
Preference number: 5 (lower is better)
Translates to: CPYFLQKQSHQVGSQ*HCLSSCDCSPHHWC
Trigger: GCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACTTTGCTTTTGAAGAAAGTATGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTGGGATGAGTCCTCTTaGGGCCACCTTCTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVWDESS*GHLLQR
Trigger: CCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTGGGATGAGTCCTCTTaGGGCCACCTTCTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHWDESS*GHLLQR
Trigger: CCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACCTTTCCTCTTGCGATaGCAGTCCACACCACTGGTG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKPFLLR*QSTPLV
Trigger: CACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCCTTTCCTCTTGCGATaGCAGTCCACACCACTGGTG +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHPFLLR*QSTPLV
Trigger: CACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACCTTTCCTCTTGCGATaGCAGTCCACACCACTGGTG +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLPFLLR*QSTPLV
Trigger: CACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATCGTTGTCTGGCTCATaGTCTTCGTCCAGCCCCATC +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLSLSGS*SSSSPI
Trigger: GATGGGGCTGGACGAAGACAATGAGCCAGACAACGA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAAGGTTGCAGCCCTCGTaGTCTGGCTCATTGTCTTCG +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLRLQPS*SGSLSS
Trigger: CGAAGACAATGAGCCAGACAACGAGGGCTGCAACCT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACAGGTTGCAGCCCTCGTaGTCTGGCTCATTGTCTTCG +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHRLQPS*SGSLSS
Trigger: CGAAGACAATGAGCCAGACAACGAGGGCTGCAACCT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAAGGTTGCAGCCCTCGTaGTCTGGCTCATTGTCTTCG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKRLQPS*SGSLSS
Trigger: CGAAGACAATGAGCCAGACAACGAGGGCTGCAACCT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTGGGATGAGTCCTCTTaGGGCCACCTTCTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFWDESS*GHLLQR
Trigger: CCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCTTTCCTCTTGCGATaGCAGTCCACACCACTGGTG +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPFLLR*QSTPLV
Trigger: CACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTGTGTCCATACTTTCTaGGTAGTCAGTGGCACTGCC +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVCVHTF*VVSGTA
Trigger: GGCAGTGCCACTGACTACCAAGAAAGTATGGACACA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTCGTTGTCTGGCTCATaGTCTTCGTCCAGCCCCATC +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANSLSGS*SSSSPI
Trigger: GATGGGGCTGGACGAAGACAATGAGCCAGACAACGA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTCGTTGTCTGGCTCATaGTCTTCGTCCAGCCCCATC +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFSLSGS*SSSSPI
Trigger: GATGGGGCTGGACGAAGACAATGAGCCAGACAACGA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGCCGCCTTCCAGGACATaGGCTAAAACAACAGTGTTG +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVPPSRT*AKTTVL
Trigger: CAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCGG...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 90 bp AATAGCTGTCGCCCTCTGATCTACAAAAACAAATTTCCCATCTATTaGGTGTCGAGAAACGTACTCCATAGATTTCACCCGTATTTCCCC +
Preference number: 5 (lower is better)
Translates to: NSCRPLIYKNKFPIY*VSRNVLHRFHPYFP
Trigger: GGGGAAATACGGGTGAAATCTATGGAGTACGTTTCTCGACACGCAATAGATGGGAAATTTGTTTTTGTAGATCAGAGGGCGACAGCTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAGCCTCCCTTGCATTCTaGATCCTTCCTTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLASLAF*ILPWCS
Trigger: AGAACACCAAGGAAGGATCAAGAATGCAAGGGAGGC...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACGCTTCTGTGTATGGGTaGGTGGCACCTCTCAAAGTT +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHASVYG*VAPLKV
Trigger: AACTTTGAGAGGTGCCACCAACCCATACACAGAAGC...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAGCTTCTGTGTATGGGTaGGTGGCACCTCTCAAAGTT +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLASVYG*VAPLKV
Trigger: AACTTTGAGAGGTGCCACCAACCCATACACAGAAGC...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGAGCCTGTGCTGTGGATaGTGCAGAAGCTTTTTCGAT +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVSLCCG*CRSFFD
Trigger: ATCGAAAAAGCTTCTGCACAATCCACAGCACAGGCT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACCGCCTTCCAGGACATaGGCTAAAACAACAGTGTTG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKPPSRT*AKTTVL
Trigger: CAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCGG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGCCTCCCTTGCATTCTaGATCCTTCCTTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANASLAF*ILPWCS
Trigger: AGAACACCAAGGAAGGATCAAGAATGCAAGGGAGGC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGCCTCCCTTGCATTCTaGATCCTTCCTTGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFASLAF*ILPWCS
Trigger: AGAACACCAAGGAAGGATCAAGAATGCAAGGGAGGC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGCTAACTTCCTGGACATaGCATTGCATGTTGGTACCA +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVLTSWT*HCMLVP
Trigger: TGGTACCAACATGCAATGCAATGTCCAGGAAGTTAG...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGCTTCTGTGTATGGGTaGGTGGCACCTCTCAAAGTT +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFASVYG*VAPLKV
Trigger: AACTTTGAGAGGTGCCACCAACCCATACACAGAAGC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGATGTTGGCTTGTAGTTaGCTTCTGTGTATGGGTTGG +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVMLACS*LLCMGW
Trigger: CCAACCCATACACAGAAGCAAACTACAAGCCAACAT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAAGCCTGTGCTGTGGATaGTGCAGAAGCTTTTTCGAT +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLSLCCG*CRSFFD
Trigger: ATCGAAAAAGCTTCTGCACAATCCACAGCACAGGCT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCCGCCTTCCAGGACATaGGCTAAAACAACAGTGTTG +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFPPSRT*AKTTVL
Trigger: CAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCGG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCCATTTAGAATCTTCTaGCCTCCTGGAGAAGAGGCA +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHPFRIF*PPGEEA
Trigger: TGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATGG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACCATTTAGAATCTTCTaGCCTCCTGGAGAAGAGGCA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLPFRIF*PPGEEA
Trigger: TGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATGG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACTAACTTCCTGGACATaGCATTGCATGTTGGTACCA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLLTSWT*HCMLVP
Trigger: TGGTACCAACATGCAATGCAATGTCCAGGAAGTTAG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAATGTTGGCTTGTAGTTaGCTTCTGTGTATGGGTTGG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKMLACS*LLCMGW
Trigger: CCAACCCATACACAGAAGCAAACTACAAGCCAACAT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACATGTTGGCTTGTAGTTaGCTTCTGTGTATGGGTTGG +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHMLACS*LLCMGW
Trigger: CCAACCCATACACAGAAGCAAACTACAAGCCAACAT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGTTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAG +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVFTEGL*HFILQK
Trigger: CTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAA...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTAGCCTGTGCTGTGGATaGTGCAGAAGCTTTTTCGAT +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFSLCCG*CRSFFD
Trigger: ATCGAAAAAGCTTCTGCACAATCCACAGCACAGGCT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGATGTATTCAACTTCCTaGGTCCACGGGTTCATGAAA +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVMYSTS*VHGFMK
Trigger: TTTCATGAACCCGTGGACCAAGGAAGTTGAATACAT...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCCATTTAGAATCTTCTaGCCTCCTGGAGAAGAGGCA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANPFRIF*PPGEEA
Trigger: TGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATGG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCCATTTAGAATCTTCTaGCCTCCTGGAGAAGAGGCA +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFPFRIF*PPGEEA
Trigger: TGCCTCTTCTCCAGGAGGCAAGAAGATTCTAAATGG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACGTTACTGGGACTACTaGATCCTTGGTCGTTATCTA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLRYWDY*ILGRYL
Trigger: TAGATAACGACCAAGGATCAAGTAGTCCCAGTAACG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAATGAAACTGTTCATTTaGTCCCGACGCCTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKMKLFI*SRRLFS
Trigger: TGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCAT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACATGAAACTGTTCATTTaGTCCCGACGCCTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHMKLFI*SRRLFS
Trigger: TGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCAT...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTCCTGGACATTGCATaGCATGTTGGTACCAAAGAA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLFLDIA*HVGTKE
Trigger: TTCTTTGGTACCAACATGCAATGCAATGTCCAGGAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTCCTGGACATTGCATaGCATGTTGGTACCAAAGAA +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHFLDIA*HVGTKE
Trigger: TTCTTTGGTACCAACATGCAATGCAATGTCCAGGAA...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCTAACTTCCTGGACATaGCATTGCATGTTGGTACCA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLTSWT*HCMLVP
Trigger: TGGTACCAACATGCAATGCAATGTCCAGGAAGTTAG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATATGTTGGCTTGTAGTTaGCTTCTGTGTATGGGTTGG +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANMLACS*LLCMGW
Trigger: CCAACCCATACACAGAAGCAAACTACAAGCCAACAT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTATTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAG +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLFTEGL*HFILQK
Trigger: CTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAA...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAATTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKFTEGL*HFILQK
Trigger: CTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAA...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGTATTCAACTTCCTaGGTCCACGGGTTCATGAAA +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLMYSTS*VHGFMK
Trigger: TTTCATGAACCCGTGGACCAAGGAAGTTGAATACAT...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAATGTATTCAACTTCCTaGGTCCACGGGTTCATGAAA +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKMYSTS*VHGFMK
Trigger: TTTCATGAACCCGTGGACCAAGGAAGTTGAATACAT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTCGTTACTGGGACTACTaGATCCTTGGTCGTTATCTA +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFRYWDY*ILGRYL
Trigger: TAGATAACGACCAAGGATCAAGTAGTCCCAGTAACG...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTATGAAACTGTTCATTTaGTCCCGACGCCTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFMKLFI*SRRLFS
Trigger: TGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCAT...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATATGAAACTGTTCATTTaGTCCCGACGCCTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANMKLFI*SRRLFS
Trigger: TGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCAT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAACATTGCATTGCATGTaGGTACCAAAGAAGCCAATT +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKTLHCM*VPKKPI
Trigger: AATTGGCTTCTTTGGTACCAACATGCAATGCAATGT...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTTTCCTGGACATTGCATaGCATGTTGGTACCAAAGAA +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFFLDIA*HVGTKE
Trigger: TTCTTTGGTACCAACATGCAATGCAATGTCCAGGAA...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTTCCTGGACATTGCATaGCATGTTGGTACCAAAGAA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANFLDIA*HVGTKE
Trigger: TTCTTTGGTACCAACATGCAATGCAATGTCCAGGAA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp AAGCTGTTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTACATCTGATAGAAATGTaGGCTTGTAGTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: KLFSLYPVSFTDCKTSPLHLIEM*ACSLLL
Trigger: CAGAAGCAAACTACAAGCCAACATTTCTATCAGATG...TAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAACAGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACATCTGATAGAAATGTaGGCTTGTAGTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKHLIEM*ACSLLL
Trigger: CAGAAGCAAACTACAAGCCAACATTTCTATCAGATG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCATCTGATAGAAATGTaGGCTTGTAGTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHHLIEM*ACSLLL
Trigger: CAGAAGCAAACTACAAGCCAACATTTCTATCAGATG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAACTTTGGCAATATCTTTaGGATGCAGGTAGTCAAACA +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKLWQYL*DAGSQT
Trigger: TGTTTGACTACCTGCATCCAAAAGATATTGCCAAAG...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TTCTCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACCTTTGGCAATATCTTTaGGATGCAGGTAGTCAAACA +
Preference number: 5 (lower is better)
Translates to: FSLYPVSFTDCKTSPLMHLWQYL*DAGSQT
Trigger: TGTTTGACTACCTGCATCCAAAAGATATTGCCAAAG...GTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATTTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAG +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANFTEGL*HFILQK
Trigger: CTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAA...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGTGTCCTATGTCGTCTaGATGAAAATACTCATAACA +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVVSYVV*MKILIT
Trigger: TGTTATGAGTATTTTCATCAAGACGACATAGGACAC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTAGTGGCTAAAACAACAGTGTaGGTTGAGACAATGTATTCA +
Preference number: 5 (lower is better)
Translates to: TSPLMHFDTAAVAKANVVAKTTV*VETMYS
Trigger: TGAATACATTGTCTCAACCAACACTGTTGTTTTAGC...CACTACATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATACATTGCATTGCATGTaGGTACCAAAGAAGCCAATT +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANTLHCM*VPKKPI
Trigger: AATTGGCTTCTTTGGTACCAACATGCAATGCAATGT...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCATCTGATAGAAATGTaGGCTTGTAGTTTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANHLIEM*ACSLLL
Trigger: CAGAAGCAAACTACAAGCCAACATTTCTATCAGATG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATCTTTGGCAATATCTTTaGGATGCAGGTAGTCAAACA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANLWQYL*DAGSQT
Trigger: TGTTTGACTACCTGCATCCAAAAGATATTGCCAAAG...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGTGTCCTATGTCGTCTaGATGAAAATACTCATAACA +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKVSYVV*MKILIT
Trigger: TGTTATGAGTATTTTCATCAAGACGACATAGGACAC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp ACAGACTGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCTAAAACAACAGTGTaGGTTGAGACAATGTATTCA +
Preference number: 5 (lower is better)
Translates to: TDCKTSPLMHFDTAAVAKAKTTV*VETMYS
Trigger: TGAATACATTGTCTCAACCAACACTGTTGTTTTAGC...TTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACAGTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TCTCTCTATCCAGTAAGCTTCACAGACTGTAAAACTTCACCATTAATGCACTTTGTGTCCTATGTCGTCTaGATGAAAATACTCATAACA +
Preference number: 5 (lower is better)
Translates to: SLYPVSFTDCKTSPLMHFVSYVV*MKILIT
Trigger: TGTTATGAGTATTTTCATCAAGACGACATAGGACAC...AAAGTGCATTAATGGTGAAGTTTTACAGTCTGTGAAGCTTACTGGATAGAGAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGTGTCCTATGTCGTCTaGATGAAAATACTCATAACA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANVSYVV*MKILIT
Trigger: TGTTATGAGTATTTTCATCAAGACGACATAGGACAC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS-3UTR CAA 90 bp TGTAAAACTTCACCATTAATGCACTTTGATACTGCAGCTGTTGCCAAAGCAAATGCTAAAACAACAGTGTaGGTTGAGACAATGTATTCA +
Preference number: 5 (lower is better)
Translates to: CKTSPLMHFDTAAVAKANAKTTV*VETMYS
Trigger: TGAATACATTGTCTCAACCAACACTGTTGTTTTAGC...ATTTGCTTTGGCAACAGCTGCAGTATCAAAGTGCATTAATGGTGAAGTTTTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp TGCCTTTCCTCTTGCGATTGCAGTCCACACCACTGGTaGCCAGGGAACCGGAGAGTAGGTCGGTGGGGCCCG +
Preference number: 6 (lower is better)
Translates to: CLSSCDCSPHHW*PGNRRVGRWGP
Trigger: CGGGCCCCACCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp TGCAGGCGCCCGATTGCAACGAGGCAGCTGAGGTTGCAGCCCTCGTaGTCTGGCTCATTGTCTTCGTCCAGCCCCATCTTCGTGGGTGGC +
Preference number: 6 (lower is better)
Translates to: CRRPIATRQLRLQPS*SGSLSSSSPIFVGG
Trigger: GCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp CACTGCCTTTCCTCTTGCGATTGCAGTCCACACCACTaGTGCCCAGGGAACCGGAGAGTAGGTCGGTGGGGC +
Preference number: 6 (lower is better)
Translates to: HCLSSCDCSPHH*CPGNRRVGRWG
Trigger: GCCCCACCGACCTACTCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp ACCATGTGCGAGTGCAGGCGCCCGATTGCAACGAGGCAGCTGAGGTaGCAGCCCTCGTTGTCTGGCTCATTGTCTTCGTCCAGCCCCATC +
Preference number: 6 (lower is better)
Translates to: TMCECRRPIATRQLR*QPSLSGSLSSSSPI
Trigger: GATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp TGGTTGTGGAACCATGTGCGAGTGCAGGCGCCCGATTaGAACGAGGCAGCTGAGGTTGCAGCCCTCGTTGTC +
Preference number: 6 (lower is better)
Translates to: WLWNHVRVQAPD*NEAAEVAALVV
Trigger: GACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp ACCCGTATTTCCCCGTTCGCTGGTTGTGGAACCATGTaGGAGTGCAGGCGCCCGATTGCAACGAGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: TRISPFAGCGTM*ECRRPIATRQL
Trigger: CAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp AGGCAGCTGAGGTTGCAGCCCTCGTTGTCTGGCTCATaGTCTTCGTCCAGCCCCATCTTCGTGGGTGGCCAG +
Preference number: 6 (lower is better)
Translates to: RQLRLQPSLSGS*SSSSPIFVGGQ
Trigger: CTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp GAGTGCAGGCGCCCGATTGCAACGAGGCAGCTGAGGTaGCAGCCCTCGTTGTCTGGCTCATTGTCTTCGTCC +
Preference number: 6 (lower is better)
Translates to: ECRRPIATRQLR*QPSLSGSLSSS
Trigger: GGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 72 bp TGTGCGAGTGCAGGCGCCCGATTGCAACGAGGCAGCTaGGGTTGCAGCCCTCGTTGTCTGGCTCATTGTCTT +
Preference number: 6 (lower is better)
Translates to: CASAGARLQRGS*GCSPRCLAHCL
Trigger: AAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp ATTTCCCCGTTCGCTGGTTGTGGAACCATGTGCGAGTaGAGGCGCCCGATTGCAACGAGGCAGCTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: ISPFAGCGTMCE*RRPIATRQLRL
Trigger: CAACCTCAGCTGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp TGCAACGAGGCAGCTGAGGTTGCAGCCCTCGTTGTCTaGCTCATTGTCTTCGTCCAGCCCCATCTTCGTGGG +
Preference number: 6 (lower is better)
Translates to: CNEAAEVAALVV*LIVFVQPHLRG
Trigger: CCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp CCCTGGAATGCCTGGGACAGTGGGATGAGTCCTCTTTaGGCCACCTTCTCCAGAGGGCAGCATGCTGTCCAT +
Preference number: 6 (lower is better)
Translates to: PWNAWDSGMSPL*ATFSRGQHAVH
Trigger: ATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGGCATTCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp TTTTCCTGCTCCGGCTCTGGTTCCCCCTGGAATGCCTaGGACAGTGGGATGAGTCCTCTTTGGGCCACCTTC +
Preference number: 6 (lower is better)
Translates to: FSCSGSGSPWNA*DSGMSPLWATF
Trigger: GAAGGTGGCCCAAAGAGGACTCATCCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCCGGAGCAGGAAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp CTTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGA +
Preference number: 6 (lower is better)
Translates to: LGSQWHCLSSCD*SPHHWCPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS GCA 72 bp GTCACTAAAGTCAACGGGGCCACCCAGCCCCGCATCTaGTTCCAAGAGGCTCATGATGACAGCCATTGCTGC +
Preference number: 6 (lower is better)
Translates to: VTKVNGATQPRI*FQEAHDDSHCC
Trigger: GCAGCAATGGCTGTCATCATGAGCCTCTTGGAAGCAGATGCGGGGCTGGGTGGCCCCGTTGACTTTAGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp GTTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGA +
Preference number: 6 (lower is better)
Translates to: VGSQWHCLSSCD*SPHHWCPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS GCA 72 bp ACTGGTAGTCAGTGGCACTGCCTTTCCTCTTGCGATTaGAGTCCACACCACTGGTGCCCAGGGAACCGGAGA +
Preference number: 6 (lower is better)
Translates to: TGSQWHCLSSCD*SPHHWCPGNRR
Trigger: TCTCCGGTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS CCA 72 bp CCGCGATCATTCGACCTATTTTTCCTGCTCCGGCTCTaGTTCCCCCTGGAATGCCTGGGACAGTGGGATGAG +
Preference number: 6 (lower is better)
Translates to: PRSFDLFFLLRL*FPLECLGQWDE
Trigger: CTCATCCCACTGTCCCAGGCATTCCAGGGGGAACCAGAGCCGGAGCAGGAAAAATAGGTCGAATGATCGCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp CCGATTGCAACGAGGCAGCTGAGGTTGCAGCCCTCGTaGTCTGGCTCATTGTCTTCGTCCAGCCCCATCTTC +
Preference number: 6 (lower is better)
Translates to: PIATRQLRLQPS*SGSLSSSSPIF
Trigger: GAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAATCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp CTCCATAGATTTCACCCGTATTTCCCCGTTCGCTGGTaGTGGAACCATGTGCGAGTGCAGGCGCCCGATTGC +
Preference number: 6 (lower is better)
Translates to: LHRFHPYFPVRW*WNHVRVQAPDC
Trigger: GCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp ATTGCAACGAGGCAGCTGAGGTTGCAGCCCTCGTTGTCTGGCTCATaGTCTTCGTCCAGCCCCATCTTCGTGGGTGGCCAGCTTTTCAAA +
Preference number: 6 (lower is better)
Translates to: IATRQLRLQPSLSGS*SSSSPIFVGGQLFK
Trigger: TTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACAACGAGGGCTGCAACCTCAGCTGCCTCGTTGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp CATCAAGTTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAAC +
Preference number: 6 (lower is better)
Translates to: HQVGSQWHCLSS*DCSPHHWCPGN
Trigger: GTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS CCA 72 bp CATAGATTTCACCCGTATTTCCCCGTTCGCTGGTTGTaGAACCATGTGCGAGTGCAGGCGCCCGATTGCAAC +
Preference number: 6 (lower is better)
Translates to: HRFHPYFPVRWL*NHVRVQAPDCN
Trigger: GTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp GTACTCCATAGATTTCACCCGTATTTCCCCGTTCGCTaGTTGTGGAACCATGTGCGAGTGCAGGCGCCCGAT +
Preference number: 6 (lower is better)
Translates to: VLHRFHPYFPVR*LWNHVRVQAPD
Trigger: ATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp AGAAACGTACTCCATAGATTTCACCCGTATTTCCCCGTTCGCTGGTaGTGGAACCATGTGCGAGTGCAGGCGCCCGATTGCAACGAGGCA +
Preference number: 6 (lower is better)
Translates to: RNVLHRFHPYFPVRW*WNHVRVQAPDCNEA
Trigger: TGCCTCGTTGCAATCGGGCGCCTGCACTCGCACATGGTTCCACAACCAGCGAACGGGGAAATACGGGTGAAATCTATGGAGTACGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp TACTTTCTTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAAC +
Preference number: 6 (lower is better)
Translates to: YFLGSQWHCLSS*DCSPHHWCPGN
Trigger: GTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAAGAAAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047321.9
ENSMUST00000210238.2
CDS GCA 72 bp ATTCTAACTGGTAGTCAGTGGCACTGCCTTTCCTCTTaGGATTGCAGTCCACACCACTGGTGCCCAGGGAAC +
Preference number: 6 (lower is better)
Translates to: ILTGSQWHCLSS*DCSPHHWCPGN
Trigger: GTTCCCTGGGCACCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAGTTAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS CCA 72 bp TGTCTGGCTCATTGTCTTCGTCCAGCCCCATCTTCGTaGGTGGCCAGCTTTTCAAATAGCCTGTGCTGTGGA +
Preference number: 6 (lower is better)
Translates to: CLAHCLRPAPSS*VASFSNSLCCG
Trigger: TCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACGAAGATGGGGCTGGACGAAGACAATGAGCCAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp CAGGTAGAGGCGAAGTCCTTATCTTCCACCTTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAGAAAGAGCGGCGGGCTCCAGAGCAT +
Preference number: 6 (lower is better)
Translates to: QVEAKSLSSTFTEGL*HFILQKKERRAPEH
Trigger: ATGCTCTGGAGCCCGCCGCTCTTTCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGATAAGGACTTCGCCTCTACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS GCA 72 bp GGTGTTCTGCATATTCTAACTGGTAGTCAGTGGCACTaGCTTTCCTCTTGCGATTGCAGTCCACACCACTGG +
Preference number: 6 (lower is better)
Translates to: GVLHILTGSQWH*LSSCDCSPHHW
Trigger: CCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAGTTAGAATATGCAGAACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210074.2
CDS GCA 72 bp CAAAAGCAAAGTCATCAAGTTGGTAGTCAGTGGCACTaGCTTTCCTCTTGCGATTGCAGTCCACACCACTGG +
Preference number: 6 (lower is better)
Translates to: QKQSHQVGSQWH*LSSCDCSPHHW
Trigger: CCAGTGGTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACTTTGCTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS CAA 72 bp GCGAAGTCCTTATCTTCCACCTTTACTGAAGGCCTGTaGCACTTCATTCTACAGAAGAAAGAGCGGCGGGCT +
Preference number: 6 (lower is better)
Translates to: AKSLSSTFTEGL*HFILQKKERRA
Trigger: AGCCCGCCGCTCTTTCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGATAAGGACTTCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp CCCCGCCTTCCAGGACATTGGCTAAAACAACAGTGTTaGTTGAGACAATGTATTCAACTTCCTTGGTCCACG +
Preference number: 6 (lower is better)
Translates to: PRLPGHWLKQQC*LRQCIQLPWST
Trigger: CGTGGACCAAGGAAGTTGAATACATTGTCTCAACCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 72 bp AAACTGTTCATTTTGTCCCGACGCCTCTTTTCAATCTaGCTGTGGGCCTCCCTTGCATTCTTGATCCTTCCT +
Preference number: 6 (lower is better)
Translates to: KLFILSRRLFSI*LWASLAFLILP
Trigger: AGGAAGGATCAAGAATGCAAGGGAGGCCCACAGTCAGATTGAAAAGAGGCGTCGGGACAAAATGAACAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp CGCCTTCCAGGACATTGGCTAAAACAACAGTGTTGGTaGAGACAATGTATTCAACTTCCTTGGTCCACGGGT +
Preference number: 6 (lower is better)
Translates to: RLPGHWLKQQCW*RQCIQLPWSTG
Trigger: ACCCGTGGACCAAGGAAGTTGAATACATTGTCTCAACCAACACTGTTGTTTTAGCCAATGTCCTGGAAGGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 72 bp TATGGGTTGGTGGCACCTCTCAAAGTTTTCATGTGCTaGACAGCCATCCTTAGCACGGTGAGTTTATCTAAC +
Preference number: 6 (lower is better)
Translates to: YGLVAPLKVFMC*TAILSTVSLSN
Trigger: GTTAGATAAACTCACCGTGCTAAGGATGGCTGTTCAGCACATGAAAACTTTGAGAGGTGCCACCAACCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CCA 72 bp TTTCTTCAAAAGCAAAGTCATCAAGTTGGTAGTCAGTaGCACTGCCTTTCCTCTTGCGATTGCAGTCCACAC +
Preference number: 6 (lower is better)
Translates to: FLQKQSHQVGSQ*HCLSSCDCSPH
Trigger: GTGTGGACTGCAATCGCAAGAGGAAAGGCAGTGCCACTGACTACCAACTTGATGACTTTGCTTTTGAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211770.2
CDS TCA 72 bp ACAGGTAGAGGCGAAGTCCTTATCTTCCACCTTTACTaGAGGCCTGTTGCACTTCATTCTACAGAAGAAAGA +
Preference number: 6 (lower is better)
Translates to: TGRGEVLIFHLY*RPVALHSTEER
Trigger: TCTTTCTTCTGTAGAATGAAGTGCAACAGGCCTTCAGTAAAGGTGGAAGATAAGGACTTCGCCTCTACCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp TCAGTTCGTCATCTGATAGAAATGTTGGCTTGTAGTTaGCTTCTGTGTATGGGTTGGTGGCACCTCTCAAAG +
Preference number: 6 (lower is better)
Translates to: SVRHLIEMLACS*LLCMGWWHLSK
Trigger: CTTTGAGAGGTGCCACCAACCCATACACAGAAGCAAACTACAAGCCAACATTTCTATCAGATGACGAACTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 90 bp GCCATCCTTAGCACGGTGAGTTTATCTAACTTCCTGGACATTGCATaGCATGTTGGTACCAAAGAAGCCAATTCATCAATGAAACTGTTC +
Preference number: 6 (lower is better)
Translates to: AILSTVSLSNFLDIA*HVGTKEANSSMKLF
Trigger: GAACAGTTTCATTGATGAATTGGCTTCTTTGGTACCAACATGCAATGCAATGTCCAGGAAGTTAGATAAACTCACCGTGCTAAGGATGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS CAA 72 bp AGCACGGTGAGTTTATCTAACTTCCTGGACATTGCATaGCATGTTGGTACCAAAGAAGCCAATTCATCAATG +
Preference number: 6 (lower is better)
Translates to: STVSLSNFLDIA*HVGTKEANSSM
Trigger: CATTGATGAATTGGCTTCTTTGGTACCAACATGCAATGCAATGTCCAGGAAGTTAGATAAACTCACCGTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2
CDS TCA 72 bp CATTGCATGTTGGTACCAAAGAAGCCAATTCATCAATaGAACTGTTCATTTTGTCCCGACGCCTCTTTTCAA +
Preference number: 6 (lower is better)
Translates to: HCMLVPKKPIHQ*NCSFCPDASFQ
Trigger: TTGAAAAGAGGCGTCGGGACAAAATGAACAGTTTCATTGATGAATTGGCTTCTTTGGTACCAACATGCAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047321.9
ENSMUST00000210074.2
ENSMUST00000210238.2
ENSMUST00000211770.2