Pregenerated sensors for ARMCX6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050394Ensembl transcript IDs: ENSMUST00000052431.12, ENSMUST00000113194.8
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCCACCCAGGGAGGAGCTaGCTGGCTAAAGCTGCATCC | + |
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Preference number: 2 (lower is better) Translates to: SSSSSSRRVFGTSSHMGVHPGRS*LAKAAS Trigger: GGATGCAGCTTTAGCCAGTCAGCTCCTCCCTGGGTG...GACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACTCACTGCAGCCTCTTTaGCCTCAGGAAAGTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDSLQPL*PQESAQ Trigger: CTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGTGA...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTAGTGGCCGCGGGCATCCCCTTACCCTTCACCTCTATGCTGTGATTTGCAAAGTGCTCAGGCTCTaGGTGGCTTCAGTCTCATTC | + |
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Preference number: 2 (lower is better) Translates to: PASGRGHPLTLHLYAVICKVLRL*VASVSF Trigger: GAATGAGACTGAAGCCACCCAGAGCCTGAGCACTTT...GCAAATCACAGCATAGAGGTGAAGGGTAAGGGGATGCCCGCGGCCACTAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGTTGCCCTCAGGAAAGTaGTCAGGCTCTGGGTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: VGQRRRELLLSKQQQQQQLPSGK*SGSGWL Trigger: AAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAA...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR CAA 90 bp | TGCAAACTACAAAACCCAGAAGTTGCCCACAGCTCTGGAAGAGCCTaGCCTGGCCAGTCAGAGTGTAGCCCTCCATTTAGACAGTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: CKLQNPEVAHSSGRA*PGQSECSPPFRQWK Trigger: CTTCCACTGTCTAAATGGAGGGCTACACTCTGACTGGCCAGGCAAGGCTCTTCCAGAGCTGTGGGCAACTTCTGGGTTTTGTAGTTTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACGGCAGCAATTTACAATaGACTTTACCTGCAAACTAC | + |
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Preference number: 2 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDGSNLQ*TLPANY Trigger: GTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGCC...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTACAAAACCCAGAAGTTaGCCACAGCTCTGGAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: AAAAAEGYLAQALIWVSFTKPRS*PQLWKS Trigger: GCTCTTCCAGAGCTGTGGGCAACTTCTGGGTTTTGT...AAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | AGCAGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTCCACATGAAGAAGGCTaGAGGGCAGCAATTTACAAT | + |
|
Preference number: 2 (lower is better) Translates to: SSSSSSSRRVFGTSSHMGPHEEG*RAAIYN Trigger: ATTGTAAATTGCTGCCCTGCAGCCTTCTTCATGTGG...ACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTTTCACTCTGATGCTGTaGCTTGCTGTTAGTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: AAAAAEGYLAQALIWVSFFTLML*LAVSFP Trigger: GGGGAAACTAACAGCAAGTCACAGCATCAGAGTGAA...AAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTTACCCTTCACCTCTATaGTGTGATTTGCTGTTAGTC | + |
|
Preference number: 2 (lower is better) Translates to: AAAAAEGYLAQALIWVSFYPSPL*CDLLLV Trigger: GACTAACAGCAAATCACAGCATAGAGGTGAAGGGTA...AAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR CCA 90 bp | CAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCACAGCTGCTCAGGCTCTGGGTaGCTTCAGTCTCATTCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: QFTMHFTCKLQNPEVAHSCSGSG*LQSHSF Trigger: GAAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCA...GCTGTGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCATGCTCAGGCTCTGGGTaGCTTCAGTCTCATTCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: AAIYNALYLQTTKPRSCPCSGSG*LQSHSF Trigger: GAAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCA...TGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR TCA 72 bp | GCCGCGGGCATCCCCTTACCCTTCACCTCTATGCTGTaGTTTGCTGTTAGTCATCCCCAGCTAGTGGCCACG | + |
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Preference number: 3 (lower is better) Translates to: AAGIPLPFTSML*FAVSHPQLVAT Trigger: CGTGGCCACTAGCTGGGGATGACTAACAGCAAATCACAGCATAGAGGTGAAGGGTAAGGGGATGCCCGCGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR CCA 72 bp | CCTGGCCAGTCAGAGTGTAGCCCTCCATTTAGACAGTaGAAGGAACTCTCACCCAGGGAGGAGCTGACTGGC | + |
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Preference number: 3 (lower is better) Translates to: PGQSECSPPFRQ*KELSPREELTG Trigger: GCCAGTCAGCTCCTCCCTGGGTGAGAGTTCCTTCCACTGTCTAAATGGAGGGCTACACTCTGACTGGCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR GCA 72 bp | GTGGCACTCACTGCAGCCTCTTTGCCCTCAGGAAAGTaGTCAGGCTCTGGGTGGCTTCAGTCTCATTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: VALTAASLPSGK*SGSGWLQSHSF Trigger: GAAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGTGAGTGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR TCA 72 bp | TTAGACAGTGGAAGGAACTCTCACCCAGGGAGGAGCTaGCTGGCTAAAGCTGCATCCTTAGTGGCACTCACT | + |
|
Preference number: 3 (lower is better) Translates to: LDSGRNSHPGRS*LAKAASLVALT Trigger: AGTGAGTGCCACTAAGGATGCAGCTTTAGCCAGTCAGCTCCTCCCTGGGTGAGAGTTCCTTCCACTGTCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR CAA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGTACAAAACCCAGAAGTaGCCCACAGCTCTGGAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: VGQRRRELLLSKQQQQQQYKTQK*PTALEE Trigger: CTCTTCCAGAGCTGTGGGCAACTTCTGGGTTTTGTA...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR CCA 72 bp | GCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATaGGTGTCATTTCTGCTAAGTGGTTCAGCGCTTAGA | + |
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Preference number: 3 (lower is better) Translates to: AAAEGYLAQALI*VSFLLSGSALR Trigger: TCTAAGCGCTGAACCACTTAGCAGAAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR-3UTR CAA 90 bp | CAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCACAGCCTCACTGCAGCCTCTTaGCCCTCAGGAAAGTGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: QFTMHFTCKLQNPEVAHSLTAAS*PSGKCS Trigger: TGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGTGAG...GCTGTGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACGTCCTCAGTCCCACCTaGGGCCCCAGGTTCATCCCA | + |
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Preference number: 4 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDVLSPT*GPRFIP Trigger: TGGGATGAACCTGGGGCCCCAGGTGGGACTGAGGAC...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGTCCCTCACAGTGGGATaGGGGGTGGGACTCCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQSLTVG*GVGLLF Trigger: AAACAGGAGTCCCACCCCCCATCCCACTGTGAGGGA...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR TCA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGGGAATGGCCGCTGCTTaGTTGGGTGTGCTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQGMAAA*LGVLCL Trigger: CAAACAGAGCACACCCAATCAAGCAGCGGCCATTCC...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | ACTGCAGCCTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCATTTGGGCAGCCAGTaGTTCCCCCACCAGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: TAASLPSGKCSGSGWLQSHLGSQ*FPHQHW Trigger: CCAGTGCTGGTGGGGGAAGCACTGGCTGCCCAAATG...AGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACAAGGAGGAGAGCATTTaGGCAGCCAGTGCTTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDKEESI*AASASP Trigger: GGGGGAAGCACTGGCTGCCCAAATGCTCTCCTCCTT...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CCAGCTAGTGGCCGCGGGCATCCCCTTACCCTTCACCTCTATGCTGTGATTTGCAATCATGAGTCCGGCTaGCATCCAACCCATTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: PASGRGHPLTLHLYAVICNHESG*HPTHFP Trigger: CGGGAAATGGGTTGGATGGCAGCCGGACTCATGATT...GCAAATCACAGCATAGAGGTGAAGGGTAAGGGGATGCCCGCGGCCACTAGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGCTGCTTGATTGGGTGTaGTCTGTTTGCCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQLLDWV*SVCLST Trigger: GGTGGAAAGGCAAACAGAGCACACCCAATCAAGCAG...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | CTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCATTCTTTGTCCTCAGTCCCACCTaGGGCCCCAGGTTCATCCCA | + |
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Preference number: 4 (lower is better) Translates to: LFALRKVLRLWVASVSFFVLSPT*GPRFIP Trigger: TGGGATGAACCTGGGGCCCCAGGTGGGACTGAGGAC...AAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGCATTTGGGCAGCCAGTaGTTCCCCCACCAGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: VGQRRRELLLSKQQQQQQHLGSQ*FPHQHW Trigger: CCAGTGCTGGTGGGGGAAGCACTGGCTGCCCAAATG...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR CAA 72 bp | AAAGCTGCATCCTTAGTGGCACTCACTGCAGCCTCTTaGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KAASLVALTAAS*PSGKCSGSGWL Trigger: AAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGTGAGTGCCACTAAGGATGCAGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CTGCAGCCTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCTGGTCAGTTTGTACATaGAGTAACAGGCACCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LQPLCPQESAQALGGFSLWSVCT*SNRHQL Trigger: GAGCTGGTGCCTGTTACTGCATGTACAAACTGACCA...GAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| 3UTR CAA 72 bp | CAAAACCCAGAAGTTGCCCACAGCTCTGGAAGAGCCTaGCCTGGCCAGTCAGAGTGTAGCCCTCCATTTAGA | + |
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Preference number: 4 (lower is better) Translates to: QNPEVAHSSGRA*PGQSECSPPFR Trigger: TCTAAATGGAGGGCTACACTCTGACTGGCCAGGCAAGGCTCTTCCAGAGCTGTGGGCAACTTCTGGGTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTAATCATGAGTCCGGCTaGCATCCAACCCATTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: QQQQQQQKGIWHKLSYGCNHESG*HPTHFP Trigger: CGGGAAATGGGTTGGATGGCAGCCGGACTCATGATT...ACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACCTTAATCCTGCCTGCTaGAGAAAAGACTTGCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDLNPAC*RKDLQQ Trigger: TTGCTGCAAGTCTTTTCTGCAGCAGGCAGGATTAAG...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CCAGCTAGTGGCCGCGGGCATCCCCTTACCCTTCACCTCTATGCTGTGATTTGCAGACTTAATCCTGCCTaGTGCAGAAAAGACTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PASGRGHPLTLHLYAVICRLNPA*CRKDLQ Trigger: CTGCAAGTCTTTTCTGCAGCAGGCAGGATTAAGTCT...GCAAATCACAGCATAGAGGTGAAGGGTAAGGGGATGCCCGCGGCCACTAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGCTGCTTGATTGGGTGTaGTCTGTTTGCCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: VGQRRRELLLSKQQQQQQLLDWV*SVCLST Trigger: GGTGGAAAGGCAAACAGAGCACACCCAATCAAGCAG...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR TCA 90 bp | TGCATCCTTAGTGGCACTCACTGCAGCCTCTTTGCCCTCAGGAAAGTGCTCAGGATCTTAATCTGGCCCTaGTTTTCAAGGCTGCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: CILSGTHCSLFALRKVLRILIWP*FSRLLF Trigger: AAACAGCAGCCTTGAAAATCAGGGCCAGATTAAGAT...CCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAGTGAGTGCCACTAAGGATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | AGCAGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTCTTAATCCTGCCTGCTaGAGAAAAGACTTGCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SSSSSSSRRVFGTSSHMGLNPAC*RKDLQQ Trigger: TTGCTGCAAGTCTTTTCTGCAGCAGGCAGGATTAAG...ACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | AGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCCCTCACTTCTTCCCATaGTCAGTTTGTACATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SSSSSSRRVFGTSSHMGVPHFFP*SVCTCS Trigger: ACTGCATGTACAAACTGACCATGGGAAGAAGTGAGG...GACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGTTTTCTTTCTTTGAGTaGAAACACACTTGTTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQFSFFE*KHTCSG Trigger: ACCTGAACAAGTGTGTTTCCACTCAAAGAAAGAAAA...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | AGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCTTCAAGGCTGCTGTTTaGGTTTTCAGGGACAAACAG | + |
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Preference number: 4 (lower is better) Translates to: SSSSSSRRVFGTSSHMGVFKAAV*VFRDKQ Trigger: CTGTTTGTCCCTGAAAACCCAAACAGCAGCCTTGAA...GACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | CAGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTTTCAAGGCTGCTGTTTaGGTTTTCAGGGACAAACAG | + |
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Preference number: 4 (lower is better) Translates to: QQQQQQQKGIWHKLSYGCFKAAV*VFRDKQ Trigger: CTGTTTGTCCCTGAAAACCCAAACAGCAGCCTTGAA...ACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | AGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTGGTCAGTTTGTACATaGAGTAACAGGCACCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SSSSSRRVFGTSSHMGVIWSVCT*SNRHQL Trigger: GAGCTGGTGCCTGTTACTGCATGTACAAACTGACCA...AATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | CTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCATTCTTTAGACTTAATCCTGCCTaGTGCAGAAAAGACTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LFALRKVLRLWVASVSFFRLNPA*CRKDLQ Trigger: CTGCAAGTCTTTTCTGCAGCAGGCAGGATTAAGTCT...AAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | GCAGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCATCCCTCACAGTGGGATaGGGGGTGGGACTCCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: AAIYNALYLQTTKPRSCPSLTVG*GVGLLF Trigger: AAACAGGAGTCCCACCCCCCATCCCACTGTGAGGGA...TGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | GCAGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCAAAGGAGGAGAGCATTTaGGCAGCCAGTGCTTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: AAIYNALYLQTTKPRSCPKEESI*AASASP Trigger: GGGGGAAGCACTGGCTGCCCAAATGCTCTCCTCCTT...TGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR TCA 90 bp | CAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCACAGCGGAATGGCCGCTGCTTaGTTGGGTGTGCTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: QFTMHFTCKLQNPEVAHSGMAAA*LGVLCL Trigger: CAAACAGAGCACACCCAATCAAGCAGCGGCCATTCC...GCTGTGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CCA 90 bp | GCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTCCTCACTTCTTCCCATaGTCAGTTTGTACATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: AAAAAEGYLAQALIWVSFPHFFP*SVCTCS Trigger: ACTGCATGTACAAACTGACCATGGGAAGAAGTGAGG...AAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR TCA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGAACCTTTTCTTTCTTTaGGTGGAAACACACTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: VGQRRRELLLSKQQQQQQNLFFL*VETHLF Trigger: GAACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTT...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR TCA 90 bp | GCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTAACCTTTTCTTTCTTTaGGTGGAAACACACTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: AAAAAEGYLAQALIWVSFNLFFL*VETHLF Trigger: GAACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTT...AAATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR GCA 90 bp | AGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCACAATCAAACCAATTGTCTaGTTCCTCTTCATCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: SNLQCTLPANYKTQKLPTIKPIV*FLFIQI Trigger: GATCTGGATGAAGAGGAAGCAGACAATTGGTTTGAT...TGTGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | CCAGCTAGTGGCCGCGGGCATCCCCTTACCCTTCACCTCTATGCTGTGATTTGCGAAGGAGGAGAGCATTaGGGCAGCCAGTGCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: PASGRGHPLTLHLYAVICEGGEH*GSQCFP Trigger: GGGGAAGCACTGGCTGCCCAAATGCTCTCCTCCTTC...GCAAATCACAGCATAGAGGTGAAGGGTAAGGGGATGCCCGCGGCCACTAGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CCA 90 bp | TTTGGGTTTTCAGGGACAAACAGAGCCTTCTCCCTCACAGTGGGATaGGGGGTGGGACTCCTGTTTCCAACCACTGATAGGCTGGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: FGFSGTNRAFSLTVG*GVGLLFPTTDRLAR Trigger: TCTGGCCAGCCTATCAGTGGTTGGAAACAGGAGTCCCACCCCCCATCCCACTGTGAGGGAGAAGGCTCTGTTTGTCCCTGAAAACCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGTGCTGCAGAAAAGACTaGCAGCAACACAACAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQCCRKD*QQHNSV Trigger: GACACTGTTGTGTTGCTGCAAGTCTTTTCTGCAGCA...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGCAGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCGGGAATGGCCGCTGCTaGATTGGGTGTGCTCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SSSSSSRRVFGTSSHMGVGNGRC*IGCALF Trigger: AAACAGAGCACACCCAATCAAGCAGCGGCCATTCCC...GACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGTGGCCACGGGGAGCCCCTTACCCTTTACCACATGAAGAAGGCTGCAGGGCAGTTTCAAGGCTGCTGTTaGGGTTTTCAGGGACAAACA | + |
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Preference number: 5 (lower is better) Translates to: SGHGEPLTLYHMKKAAGQFQGCC*GFQGQT Trigger: TGTTTGTCCCTGAAAACCCAAACAGCAGCCTTGAAA...CTGCCCTGCAGCCTTCTTCATGTGGTAAAGGGTAAGGGGCTCCCCGTGGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | CTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCATTCTTTGGGAATGGCCGCTGCTaGATTGGGTGTGCTCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: LFALRKVLRLWVASVSFFGNGRC*IGCALF Trigger: AAACAGAGCACACCCAATCAAGCAGCGGCCATTCCC...AAAGAATGAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | CTGCAGCCTCTTTGCCCTCAGGAAAGTGCTCAGGCTCTGGGTGGCTTCAGTCTCTTTCAAGGCTGCTGTTaGGGTTTTCAGGGACAAACA | + |
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Preference number: 5 (lower is better) Translates to: LQPLCPQESAQALGGFSLFQGCC*GFQGQT Trigger: TGTTTGTCCCTGAAAACCCAAACAGCAGCCTTGAAA...GAGACTGAAGCCACCCAGAGCCTGAGCACTTTCCTGAGGGCAAAGAGGCTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS GCA 90 bp | CCCAGGTTCATCCCAGTCCCCATCCTCACTCCAGGGTCGAGCCATTaGTGTGAAATCAAACCAATTGTCTGCTTCCTCTTCATCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: PRFIPVPILTPGSSH*CEIKPIVCFLFIQI Trigger: GATCTGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCCTGGAGTGAGGATGGGGACTGGGATGAACCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | CTGGGGGTGAGGGTAAGGGACTGGGGAGTAAGAGGGTCAGTCACTACAGTGGACGTGAAATCAAACCAATaGTCTGCTTCCTCTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: LGVRVRDWGVRGSVTTVDVKSNQ*SASSSS Trigger: GGATGAAGAGGAAGCAGACAATTGGTTTGATTTCAC...GTCCACTGTAGTGACTGACCCTCTTACTCCCCAGTCCCTTACCCTCACCCCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | GCAGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCAGAAGGAGGAGAGCATTaGGGCAGCCAGTGCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: AAIYNALYLQTTKPRSCPEGGEH*GSQCFP Trigger: GGGGAAGCACTGGCTGCCCAAATGCTCTCCTCCTTC...TGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS TCA 90 bp | GTTCACCCCATATGTTTTTATGTTCATAAGGGAATGGCCGCTGCTTaGTTGGGTGTGCTCTGTTTGCCTTTCCACCACCTGACCGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: VHPICFYVHKGMAAA*LGVLCLPFHHLTVC Trigger: ACAGACGGTCAGGTGGTGGAAAGGCAAACAGAGCACACCCAATCAAGCAGCGGCCATTCCCTTATGAACATAAAAACATATGGGGTGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTTGCTGCAGAAAAGACTaGCAGCAACACAACAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SSSSSRRVFGTSSHMGVICCRKD*QQHNSV Trigger: GACACTGTTGTGTTGCTGCAAGTCTTTTCTGCAGCA...AATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | GTAGGACAGAGGAGAAGGGAACTACTTCTATCTAAGCAGCAGCAGCAGCAGCAGAGATGTTTACTGATATaGGGGCTAAGGGAAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VGQRRRELLLSKQQQQQQRCLLI*GLREKP Trigger: TGGCTTTTCCCTTAGCCCCAATATCAGTAAACATCT...CTGCTGCTGCTGCTGCTGCTTAGATAGAAGTAGTTCCCTTCTCCTCTGTCCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGCAGCAGCAGCAGCAGAAGGGTATTTGGCACAAGCTCTCATATGGGTGTCATTAGATGTTTACTGATATaGGGGCTAAGGGAAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSSSSRRVFGTSSHMGVIRCLLI*GLREKP Trigger: TGGCTTTTCCCTTAGCCCCAATATCAGTAAACATCT...AATGACACCCATATGAGAGCTTGTGCCAAATACCCTTCTGCTGCTGCTGCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CCA 90 bp | TTTAAAGCTCTGTTCACCCCATATGTTTTTATGTTCATAAGGGAATaGCCGCTGCTTGATTGGGTGTGCTCTGTTTGCCTTTCCACCACC | + |
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Preference number: 5 (lower is better) Translates to: FKALFTPYVFMFIRE*PLLDWVCSVCLSTT Trigger: GGTGGTGGAAAGGCAAACAGAGCACACCCAATCAAGCAGCGGCCATTCCCTTATGAACATAAAAACATATGGGGTGAACAGAGCTTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | GCAGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCAGTGAAATCAAACCAATaGTCTGCTTCCTCTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: AAIYNALYLQTTKPRSCPVKSNQ*SASSSS Trigger: GGATGAAGAGGAAGCAGACAATTGGTTTGATTTCAC...TGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS TCA 90 bp | AGGGAAAAGCCAGCATTTATGTTCTTCGTGAACCTTTTCTTTCTTTaGGTGGAAACACACTTGTTCAGGTCAAGAATACAAGTGAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: REKPAFMFFVNLFFL*VETHLFRSRIQVKD Trigger: ATCCTTCACTTGTATTCTTGACCTGAACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTTCACGAAGAACATAAATGCTGGCTTTTCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS-3UTR CAA 90 bp | AGCAATTTACAATGCACTTTACCTGCAAACTACAAAACCCAGAAGTTGCCCACAGAACCTTTTCTTTCTTaGAGTGGAAACACACTTGTT | + |
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Preference number: 5 (lower is better) Translates to: SNLQCTLPANYKTQKLPTEPFLS*SGNTLV Trigger: AACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTTC...TGTGGGCAACTTCTGGGTTTTGTAGTTTGCAGGTAAAGTGCATTGTAAATTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CCA 72 bp | TCAGGGACAAACAGAGCCTTCTCCCTCACAGTGGGATaGGGGGTGGGACTCCTGTTTCCAACCACTGATAGG | + |
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Preference number: 6 (lower is better) Translates to: SGTNRAFSLTVG*GVGLLFPTTDR Trigger: CCTATCAGTGGTTGGAAACAGGAGTCCCACCCCCCATCCCACTGTGAGGGAGAAGGCTCTGTTTGTCCCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS TCA 72 bp | AGTCCCCATCCTCACTCCAGGGTCGAGCCATTGCTGTaGAATCAAACCAATTGTCTGCTTCCTCTTCATCCA | + |
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Preference number: 6 (lower is better) Translates to: SPHPHSRVEPLL*NQTNCLLPLHP Trigger: TGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCCTGGAGTGAGGATGGGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CAA 90 bp | CCATCCTCACTCCAGGGTCGAGCCATTGCTGTGAAATCAAACCAATaGTCTGCTTCCTCTTCATCCAGATCCTGTCCATCTTCCCATTCA | + |
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Preference number: 6 (lower is better) Translates to: PSSLQGRAIAVKSNQ*SASSSSRSCPSSHS Trigger: TGAATGGGAAGATGGACAGGATCTGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCCTGGAGTGAGGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS GCA 72 bp | GGGTCGAGCCATTGCTGTGAAATCAAACCAATTGTCTaGTTCCTCTTCATCCAGATCCTGTCCATCTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: GSSHCCEIKPIV*FLFIQILSIFP Trigger: TGGGAAGATGGACAGGATCTGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CAA 72 bp | CTCCAGGGTCGAGCCATTGCTGTGAAATCAAACCAATaGTCTGCTTCCTCTTCATCCAGATCCTGTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: LQGRAIAVKSNQ*SASSSSRSCPS Trigger: AGATGGACAGGATCTGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCCTGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CAA 90 bp | CTCCTGTTTCCAACCACTGATAGGCTGGCCAGATGTTTACTGATATaGGGGCTAAGGGAAAAGCCAGCATTTATGTTCTTCGTGAACCTT | + |
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Preference number: 6 (lower is better) Translates to: LLFPTTDRLARCLLI*GLREKPAFMFFVNL Trigger: AAGGTTCACGAAGAACATAAATGCTGGCTTTTCCCTTAGCCCCAATATCAGTAAACATCTGGCCAGCCTATCAGTGGTTGGAAACAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CAA 72 bp | CCAACCACTGATAGGCTGGCCAGATGTTTACTGATATaGGGGCTAAGGGAAAAGCCAGCATTTATGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: PTTDRLARCLLI*GLREKPAFMFF Trigger: GAAGAACATAAATGCTGGCTTTTCCCTTAGCCCCAATATCAGTAAACATCTGGCCAGCCTATCAGTGGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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| CDS CAA 72 bp | GCCAGCATTTATGTTCTTCGTGAACCTTTTCTTTCTTaGAGTGGAAACACACTTGTTCAGGTCAAGAATACA | + |
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Preference number: 6 (lower is better) Translates to: ASIYVLREPFLS*SGNTLVQVKNT Trigger: TGTATTCTTGACCTGAACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTTCACGAAGAACATAAATGCTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052431.12 ENSMUST00000113194.8 |
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