Pregenerated sensors for ARMCX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072969Ensembl transcript IDs: ENSMUST00000096321.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCTAGCATCCATAAAATaGCCTCCCTCAACACAGAGA | + |
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Preference number: 2 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYLASIK*PPSTQR Trigger: TCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTGGGCTCAGTGGAAATaGCTGGCTGTGTCCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYWAQWK*LAVSWP Trigger: TGGCCAGGACACAGCCAGCCATTTCCACTGAGCCCA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTCCAGGTCACAGTCTTaGGCTCAGTGGAAATGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYSRSQS*AQWKWL Trigger: CAGCCATTTCCACTGAGCCCAAGACTGTGACCTGGA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR GCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCTGTGTCCTGGCCACTaGTTCATCCCTAGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYLCPGH*FIPSLS Trigger: GCTGAGGCTAGGGATGAAGCAGTGGCCAGGACACAG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR GCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATAGCGCCCTTGAGAGATaGCTCAATTCCAGTGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYSALER*LNSSVN Trigger: ATTGACACTGGAATTGAGGCATCTCTCAAGGGCGCT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCAGTCTTGGGCTCAGTaGAAATGGCTGGCTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYQSWAQ*KWLAVS Trigger: GGACACAGCCAGCCATTTCCACTGAGCCCAAGACTG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATCCCCCATTCTTCTTTTaGTTCTGCCTTAACGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYPPFFF*FCLNGF Trigger: AAAGCCGTTAAGGCAGAACCAAAAGAAGAATGGGGG...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACAGGTCCCCCATAAGGTaGGATCTTGGTCAAAGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYRSPIR*DLGQRS Trigger: CGACCTTTGACCAAGATCCCACCTTATGGGGGACCT...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR TCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTTCCAGTGTCAATCTTaGCTTCAGACTTGGTTACAG | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYFQCQS*LQTWLQ Trigger: CTGTAACCAAGTCTGAAGTCAAGATTGACACTGGAA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR TCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCCCCAGCCCTGGATTTaGCACAGACCTCTTTCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYPQPWI*HRPLSL Trigger: TAAAGAAAGAGGTCTGTGTCAAATCCAGGGCTGGGG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACGCAGAGCATCTGACTTaGTGTGAGGCACTAAAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYAEHLT*CEALKQ Trigger: CTGCTTTAGTGCCTCACACCAAGTCAGATGCTCTGC...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATAAGTCTTGGAGTTTCTaGTCAAACTCTTTTGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYKSWSF*SNSFAS Trigger: GGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR TCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATACATTACTTCAGCACTaGTCAGTTCTCTTGTATTCG | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYTLLQH*SVLLYS Trigger: CGAATACAAGAGAACTGATCAGTGCTGAAGTAATGT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCATTGGCAGGGCTATTaGTTCCAGGTTTTGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYHWQGY*FQVLRK Trigger: CTTCCTCAAAACCTGGAACCAATAGCCCTGCCAATG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATAATATCTTGAGTAAATaGGTAAGCAGGACTGATCCC | + |
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Preference number: 4 (lower is better) Translates to: KMTSIHKMASLNTESISYNILSK*VSRTDP Trigger: GGGATCAGTCCTGCTTACCCATTTACTCAAGATATT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR TCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTTTGACTCATTCTTGTaGAAGAGAGCGACCAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYFDSFL*KRATSE Trigger: CTCACTGGTCGCTCTCTTTCACAAGAATGAGTCAAA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCATAAGGTGGGATCTTaGTCAAAGGTCGAATACCCA | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYHKVGS*SKVEYP Trigger: TGGGTATTCGACCTTTGACCAAGATCCCACCTTATG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACACATCAGGGTCACTGTaGTCTGTTAAGTCTTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYTSGSL*SVKSWS Trigger: ACTCCAAGACTTAACAGACCACAGTGACCCTGATGT...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR TCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACACGGCTTTAGTGGTCTaGTTCTTGGCTTTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYTALVV*FLAFPL Trigger: TAAAGGAAAAGCCAAGAATCAGACCACTAAAGCCGT...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTTCTTCAACCTTTGGTaGGGGCTGATAAACTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYFFNLW*GLINLK Trigger: CTTCAAGTTTATCAGCCCCCACCAAAGGTTGAAGAA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTTCTTCTTCAACCTTTaGTGGGGGCTGATAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYFFFNL*WGLINL Trigger: CAAGTTTATCAGCCCCCACCAAAGGTTGAAGAAGAA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CCA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCGGGGGCATCAGGGTTaGCATTTATATTTAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYRGHQG*HLYLKF Trigger: GAACTTTAAATATAAATGCCAACCCTGATGCCCCCG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 90 bp | CACAGTCTTGGGCTCAGTGGAAATGGCTGGCTGTGTCCTGGCCACTaGTTCATCCCTAGCCTCAGCCTGGTTCCCCCATTCTTCTTTTGG | + |
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Preference number: 5 (lower is better) Translates to: HSLGLSGNGWLCPGH*FIPSLSLVPPFFFW Trigger: CCAAAAGAAGAATGGGGGAACCAGGCTGAGGCTAGGGATGAAGCAGTGGCCAGGACACAGCCAGCCATTTCCACTGAGCCCAAGACTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 90 bp | AAGGTTGCAACCAGAGTCCAGTTCCCATCTGGAGGTAAAGATGGCTaGGGTTCCTCAATGGGGACCAGGACAATAAACCTGCCCCTTAAC | + |
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Preference number: 5 (lower is better) Translates to: KVATRVQFPSGGKDG*GSSMGTRTINLPLN Trigger: GTTAAGGGGCAGGTTTATTGTCCTGGTCCCCATTGAGGAACCGCAGCCATCTTTACCTCCAGATGGGAACTGGACTCTGGTTGCAACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 90 bp | CTTAATACTGCGCTTATCAGTAGCCTTGGCAGCGCCCTTGAGAGATaGCTCAATTCCAGTGTCAATCTTGACTTCAGACTTGGTTACAGT | + |
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Preference number: 5 (lower is better) Translates to: LNTALISSLGSALER*LNSSVNLDFRLGYS Trigger: ACTGTAACCAAGTCTGAAGTCAAGATTGACACTGGAATTGAGGCATCTCTCAAGGGCGCTGCCAAGGCTACTGATAAGCGCAGTATTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 90 bp | AATCGGCTAAAGTCTGGAAGTAAGGTCCCCCATAAGGTGGGATCTTaGTCAAAGGTCGAATACCCAGGGGAGTTTCAATTAAGGTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: NRLKSGSKVPHKVGS*SKVEYPGEFQLRLQ Trigger: TTGCAACCTTAATTGAAACTCCCCTGGGTATTCGACCTTTGACCAAGATCCCACCTTATGGGGGACCTTACTTCCAGACTTTAGCCGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 90 bp | GTTCAAAGGACAACAGAGTATGTCCCTACAAACTTTATTTACATGTaGTTCGGTCTCTTTCACTTCTTCGGGGGCATCAGGGTTGGCATT | + |
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Preference number: 5 (lower is better) Translates to: VQRTTEYVPTNFIYM*FGLFHFFGGIRVGI Trigger: AATGCCAACCCTGATGCCCCCGAAGAAGTGAAAGAGACCGAAGCACATGTAAATAAAGTTTGTAGGGACATACTCTGTTGTCCTTTGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 90 bp | TCTCTCACATCAGGGTCACTGTGGTCTGTTAAGTCTTGGAGTTTCTaGTCAAACTCTTTTGCCTCCCGGAATATGGAAATAAGTTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: SLTSGSLWSVKSWSF*SNSFASRNMEISSD Trigger: ATCTGAACTTATTTCCATATTCCGGGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTTAACAGACCACAGTGACCCTGATGTGAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTCTCCAGCACTGGATTaGACACAGACCTCTTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: KMTSIHKMASLNTESISYSPALD*TQTSLA Trigger: AGCTAAAGAGGTCTGTGTCAAATCCAGTGCTGGAGA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTTCCAGGTCACAGTCTaGGGCTCAGTGGAAATGGCT | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYFQVTV*GSVEMA Trigger: AGCCATTTCCACTGAGCCCAAGACTGTGACCTGGAA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 90 bp | TTGAGTATTAATCGGATAACTTTATCTCTCACATCAGGGTCACTGTaGTCTGTTAAGTCTTGGAGTTTCTGGTCAAACTCTTTTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LSINRITLSLTSGSL*SVKSWSFWSNSFAS Trigger: GGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTTAACAGACCACAGTGACCCTGATGTGAGAGATAAAGTTATCCGATTAATACTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTCGGGGGCATCAGGGTaGGCATTTATATTTAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: KMTSIHKMASLNTESISYSGASG*AFIFKV Trigger: AACTTTAAATATAAATGCCAACCCTGATGCCCCCGA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTATTGGTTCCAGGTTTaGAGGAAGCCCCAGACTCTT | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYYWFQV*RKPQTL Trigger: AAGAGTCTGGGGCTTCCTCAAAACCTGGAACCAATA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATATCTTGACTTCAGACTaGGTTACAGTAATGACCACA | + |
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Preference number: 5 (lower is better) Translates to: KMTSIHKMASLNTESISYILTSD*VTVMTT Trigger: TGTGGTCATTACTGTAACCAAGTCTGAAGTCAAGAT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACCAGACCTCTTTAGCTTaGTCTCCAGCACTGGATTTG | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYQTSLA*SPALDL Trigger: CAAATCCAGTGCTGGAGACAAAGCTAAAGAGGTCTG...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATATCGTGAACAATATCTaGAGTAAATGGGTAAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: KMTSIHKMASLNTESISYIVNNI*SKWVSR Trigger: CCTGCTTACCCATTTACTCAAGATATTGTTCACGAT...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | AAGATGACTAGCATCCATAAAATGGCCTCCCTCAACACAGAGAGCATAAGTTATTATTCGCTTGATTTTTaGACAAGCACAAAAGGACTC | + |
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Preference number: 5 (lower is better) Translates to: KMTSIHKMASLNTESISYYSLDF*TSTKGL Trigger: GAGTCCTTTTGTGCTTGTCAAAAAATCAAGCGAATA...ATAACTTATGCTCTCTGTGTTGAGGGAGGCCATTTTATGGATGCTAGTCATCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTCTGGTCAAACTCTTTaGCCTCCCGGAATATGGAAA | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYSGQTL*PPGIWK Trigger: TTTCCATATTCCGGGAGGCAAAAGAGTTTGACCAGA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 90 bp | AATCATAACAGTAATACCAACATCGTGAACAATATCTTGAGTAAATaGGTAAGCAGGACTGATCCCCATTATCATTGTAGCTATCTCATG | + |
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Preference number: 5 (lower is better) Translates to: NHNSNTNIVNNILSK*VSRTDPHYHCSYLM Trigger: CATGAGATAGCTACAATGATAATGGGGATCAGTCCTGCTTACCCATTTACTCAAGATATTGTTCACGATGTTGGTATTACTGTTATGATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACATTCCAGTGTCAATCTaGACTTCAGACTTGGTTACA | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYIPVSI*TSDLVT Trigger: TGTAACCAAGTCTGAAGTCAAGATTGACACTGGAAT...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS-3UTR CAA 90 bp | GCACAGAAATATAGCTTATTTAGAACGAATAGGTTCAGTACTGGGTTACATTACTGGGGGCTGATAAACTaGAAGAGGATTTTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: AQKYSLFRTNRFSTGLHYWGLIN*KRIFFF Trigger: AAAGAAGAAAATCCTCTTCAAGTTTATCAGCCCCCA...GTAATGTAACCCAGTACTGAACCTATTCGTTCTAAATAAGCTATATTTCTGTGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 72 bp | ACCAGAGTCCAGTTCCCATCTGGAGGTAAAGATGGCTaGGGTTCCTCAATGGGGACCAGGACAATAAACCTG | + |
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Preference number: 6 (lower is better) Translates to: TRVQFPSGGKDG*GSSMGTRTINL Trigger: CAGGTTTATTGTCCTGGTCCCCATTGAGGAACCGCAGCCATCTTTACCTCCAGATGGGAACTGGACTCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 72 bp | GCGCTTATCAGTAGCCTTGGCAGCGCCCTTGAGAGATaGCTCAATTCCAGTGTCAATCTTGACTTCAGACTT | + |
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Preference number: 6 (lower is better) Translates to: ALISSLGSALER*LNSSVNLDFRL Trigger: AAGTCTGAAGTCAAGATTGACACTGGAATTGAGGCATCTCTCAAGGGCGCTGCCAAGGCTACTGATAAGCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | TTGATGACAATACTAGCTTTGTCCCCAGCCCTGGATTaGACACAGACCTCTTTAGCTTTGTCCCCAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LMTILALSPALD*TQTSLALSPAL Trigger: CAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAGTATTGTCATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | GCCTTGGCAGCGCCCTTGAGAGATGCCTCAATTCCAGTGTCAATCTaGACTTCAGACTTGGTTACAGTAATGACCACAGATGTAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: ALAAPLRDASIPVSI*TSDLVTVMTTDVGR Trigger: TCTGCCTACATCTGTGGTCATTACTGTAACCAAGTCTGAAGTCAAGATTGACACTGGAATTGAGGCATCTCTCAAGGGCGCTGCCAAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | GGCTTCTGCTTAATACTGCGCTTATCAGTAGCCTTGGCAGCGCCCTaGAGAGATGCCTCAATTCCAGTGTCAATCTTGACTTCAGACTTG | + |
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Preference number: 6 (lower is better) Translates to: GFCLILRLSVALAAP*RDASIPVSILTSDL Trigger: CAAGTCTGAAGTCAAGATTGACACTGGAATTGAGGCATCTCTCAAGGGCGCTGCCAAGGCTACTGATAAGCGCAGTATTAAGCAGAAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | TCAGTGGTGTTGATGACAATACTAGCTTTGTCCCCAGCCCTGGATTaGACACAGACCTCTTTAGCTTTGTCCCCAGCCCTGGATTTGACA | + |
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Preference number: 6 (lower is better) Translates to: SVVLMTILALSPALD*TQTSLALSPALDLT Trigger: TGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAGTATTGTCATCAACACCACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 72 bp | AGCCTCAGCCTGGTTCCCCCATTCTTCTTTTGGTTCTaGCTTAACGGCTTTAGTGGTCTGATTCTTGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: SLSLVPPFFFWF*LNGFSGLILGF Trigger: AAAGCCAAGAATCAGACCACTAAAGCCGTTAAGGCAGAACCAAAAGAAGAATGGGGGAACCAGGCTGAGGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 72 bp | ATCCCTAGCCTCAGCCTGGTTCCCCCATTCTTCTTTTaGTTCTGCCTTAACGGCTTTAGTGGTCTGATTCTT | + |
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Preference number: 6 (lower is better) Translates to: IPSLSLVPPFFF*FCLNGFSGLIL Trigger: AAGAATCAGACCACTAAAGCCGTTAAGGCAGAACCAAAAGAAGAATGGGGGAACCAGGCTGAGGCTAGGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | ACACAGACCTCTTTAGCTTTGTCCCCAGCCCTGGATTaGACACAGACCTCTTTCTTTATCTCAGGCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: TQTSLALSPALD*TQTSFFISGFC Trigger: GCAGAAGCCTGAGATAAAGAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | TCCCCAGCCCTGGATTTGACACAGACCTCTTTAGCTTaGTCTCCAGCACTGGATTTGACACAGACCTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: SPALDLTQTSLA*SPALDLTQTSL Trigger: TAAAGAGGTCTGTGTCAAATCCAGTGCTGGAGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | CTGGATTTGACACAGACCTCTTTAGCTTTGTCTCCAGCACTGGATTaGACACAGACCTCTTTAGCTTTGTCCCCAGCCCTGGATTTGACA | + |
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Preference number: 6 (lower is better) Translates to: LDLTQTSLALSPALD*TQTSLALSPALDLT Trigger: TGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGTGCTGGAGACAAAGCTAAAGAGGTCTGTGTCAAATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | CTGGATTTGACACAGACCTCTTTAGCTTTGTCCCCAGCCCTGGATTaGACACAGACCTCTTTAGCTTTGTCTCCAGCACTGGATTTGACA | + |
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Preference number: 6 (lower is better) Translates to: LDLTQTSLALSPALD*TQTSLALSPALDLT Trigger: TGTCAAATCCAGTGCTGGAGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS TCA 72 bp | TCCTTTAGCATTGGCAGGGCTATTGGTTCCAGGTTTTaGGGAAGCCCCAGACTCTTCTCTAGCTTTCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SFSIGRAIGSRF*GSPRLFSSFPF Trigger: AAAAGGAAAGCTAGAGAAGAGTCTGGGGCTTCCTCAAAACCTGGAACCAATAGCCCTGCCAATGCTAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS TCA 72 bp | ACTAAAGCAGGCCCTGCCGGGAGTTCTGTCTTAGCCTaGGCCATGACTCTAGCATTAGTCTTATCTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: TKAGPAGSSVLA*AMTLALVLSFF Trigger: AAAGAAAGATAAGACTAATGCTAGAGTCATGGCTCAGGCTAAGACAGAACTCCCGGCAGGGCCTGCTTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 72 bp | AAGTCTGGAAGTAAGGTCCCCCATAAGGTGGGATCTTaGTCAAAGGTCGAATACCCAGGGGAGTTTCAATTA | + |
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Preference number: 6 (lower is better) Translates to: KSGSKVPHKVGS*SKVEYPGEFQL Trigger: TAATTGAAACTCCCCTGGGTATTCGACCTTTGACCAAGATCCCACCTTATGGGGGACCTTACTTCCAGACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 72 bp | TCTCTCACATCAGGGTCACTGTGGTCTGTTAAGTCTTaGAGTTTCTGGTCAAACTCTTTTGCCTCCCGGAAT | + |
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Preference number: 6 (lower is better) Translates to: SLTSGSLWSVKS*SFWSNSFASRN Trigger: ATTCCGGGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTTAACAGACCACAGTGACCCTGATGTGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | CTGGATTTGACACAGACCTCTTTAGCTTTGTCCCCAGCCCTGGATTaGACACAGACCTCTTTCTTTATCTCAGGCTTCTGCTTAATACTG | + |
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Preference number: 6 (lower is better) Translates to: LDLTQTSLALSPALD*TQTSFFISGFCLIL Trigger: CAGTATTAAGCAGAAGCCTGAGATAAAGAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | TTAGCTTTGTCTCCAGCACTGGATTTGACACAGACCTCTTTAGCTTaGTCCCCAGCCCTGGATTTGACACAGACCTCTTTCTTTATCTCA | + |
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Preference number: 6 (lower is better) Translates to: LALSPALDLTQTSLA*SPALDLTQTSFFIS Trigger: TGAGATAAAGAAAGAGGTCTGTGTCAAATCCAGGGCTGGGGACAAAGCTAAAGAGGTCTGTGTCAAATCCAGTGCTGGAGACAAAGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS GCA 72 bp | GATTTGACACAGACCTCTTTCTTTATCTCAGGCTTCTaGTTAATACTGCGCTTATCAGTAGCCTTGGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: DLTQTSFFISGF*LILRLSVALAA Trigger: CGCTGCCAAGGCTACTGATAAGCGCAGTATTAAGCAGAAGCCTGAGATAAAGAAAGAGGTCTGTGTCAAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | GCGCCCTTGAGAGATGCCTCAATTCCAGTGTCAATCTaGACTTCAGACTTGGTTACAGTAATGACCACAGAT | + |
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Preference number: 6 (lower is better) Translates to: APLRDASIPVSI*TSDLVTVMTTD Trigger: ATCTGTGGTCATTACTGTAACCAAGTCTGAAGTCAAGATTGACACTGGAATTGAGGCATCTCTCAAGGGCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | CTAAAGGTGCGGGATTTACAGCGGCAGGTATTTGGATaGGGTCCATACTTCTCTTTTTCCCGGATTTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LKVRDLQRQVFG*GPYFSFSRIWF Trigger: AAACCAAATCCGGGAAAAAGAGAAGTATGGACCCAATCCAAATACCTGCCGCTGTAAATCCCGCACCTTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS TCA 72 bp | TCTTCTTTTGGTTCTGCCTTAACGGCTTTAGTGGTCTaGTTCTTGGCTTTTCCTTTAGCATTGGCAGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: SSFGSALTALVV*FLAFPLALAGL Trigger: TAGCCCTGCCAATGCTAAAGGAAAAGCCAAGAATCAGACCACTAAAGCCGTTAAGGCAGAACCAAAAGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CCA 72 bp | TCAGGGTCACTGTGGTCTGTTAAGTCTTGGAGTTTCTaGTCAAACTCTTTTGCCTCCCGGAATATGGAAATA | + |
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Preference number: 6 (lower is better) Translates to: SGSLWSVKSWSF*SNSFASRNMEI Trigger: TATTTCCATATTCCGGGAGGCAAAAGAGTTTGACCAGAAACTCCAAGACTTAACAGACCACAGTGACCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS TCA 72 bp | GCAGGACTGATCCCCATTATCATTGTAGCTATCTCATaGATAAACGGATCCCTCGTTAACTTAAGTAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: AGLIPIIIVAIS*INGSLVNLSRA Trigger: TGCCCTACTTAAGTTAACGAGGGATCCGTTTATTCATGAGATAGCTACAATGATAATGGGGATCAGTCCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 72 bp | GCTTCGGTCTCTTTCACTTCTTCGGGGGCATCAGGGTaGGCATTTATATTTAAAGTTCTAGGGTATTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: ASVSFTSSGASG*AFIFKVLGYFL Trigger: TAAGAAATACCCTAGAACTTTAAATATAAATGCCAACCCTGATGCCCCCGAAGAAGTGAAAGAGACCGAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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| CDS CAA 90 bp | TTTACATGTGCTTCGGTCTCTTTCACTTCTTCGGGGGCATCAGGGTaGGCATTTATATTTAAAGTTCTAGGGTATTTCTTAGCATTTGGA | + |
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Preference number: 6 (lower is better) Translates to: FTCASVSFTSSGASG*AFIFKVLGYFLAFG Trigger: TCCAAATGCTAAGAAATACCCTAGAACTTTAAATATAAATGCCAACCCTGATGCCCCCGAAGAAGTGAAAGAGACCGAAGCACATGTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096321.3 |
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