Pregenerated sensors for ARMC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027599Ensembl transcript IDs: ENSMUST00000029125.10
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCACAACTGCCTGTAACTCCAGCTCCCGTGACCTAATAGTCTCCTaGCTCCCCCAGGCATGTACACACAGAGACATGGAGGATGGATGG | + |
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Preference number: 1 (lower is better) Translates to: LTTACNSSSRDLIVS*LPQACTHRDMEDGW Trigger: CCATCCATCCTCCATGTCTCTGTGTGTACATGCCTGGGGGAGTCAGGAGACTATTAGGTCACGGGAGCTGGAGTTACAGGCAGTTGTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR TCA 90 bp | TCAAACATCACAGTGGACTTAATTCTTAAAAGCCACTCTAACTGGTaGGCAGGAGTCAACAGAGCCAGGCTTGGCCACATTCAAATCCTT | + |
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Preference number: 1 (lower is better) Translates to: SNITVDLILKSHSNW*AGVNRARLGHIQIL Trigger: AAGGATTTGAATGTGGCCAAGCCTGGCTCTGTTGACTCCTGCTCACCAGTTAGAGTGGCTTTTAAGAATTAAGTCCACTGTGATGTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR TCA 90 bp | AGGATTGTACGGTTATTTCTCCTCAGCAACACTGGATGGCTTCAATaGTCTCTAAGAGAGAGACAGCAAAGATGTAAGGAAACCCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: RIVRLFLLSNTGWLQ*SLRERQQRCKETLQ Trigger: CTGGAGGGTTTCCTTACATCTTTGCTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGTGTTGCTGAGGAGAAATAACCGTACAATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CCA 90 bp | ACCCTCCTTCCAGAAAGCCAAATGTTAATAAACTTAATGGTCTCATaGGCCATAGGATTGTACGGTTATTTCTCCTCAGCAACACTGGAT | + |
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Preference number: 1 (lower is better) Translates to: TLLPESQMLINLMVS*AIGLYGYFSSATLD Trigger: ATCCAGTGTTGCTGAGGAGAAATAACCGTACAATCCTATGGCCCATGAGACCATTAAGTTTATTAACATTTGGCTTTCTGGAAGGAGGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCAGACAGCTCACAACTCAACAGAGCCAGGCTTaGCCACATTCAAATCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: FLQSTELNSQNHIRQLTTQQSQA*PHSNPS Trigger: GGAAGGATTTGAATGTGGCCAAGCCTGGCTCTGTTG...AGTTGTGAGCTGTCTGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | CCTCAGCAACACTGGATGGCTTCAATGATCTCTAAGAGAGAGACAGCAAAGATGGGGATGGGTATGTGTTaGTGTCTGACATCAGACCAA | + |
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Preference number: 2 (lower is better) Translates to: PQQHWMASMISKRETAKMGMGMC*CLTSDQ Trigger: TTGGTCTGATGTCAGACATCAACACATACCCATCCC...CATCTTTGCTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGTGTTGCTGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | TGGATACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCCTTAGAGATGTGCCCTaGAAATGTCTGCTTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: WIPSISHTHTHTRTYVSILRDVP*KCLLSA Trigger: AGCAGAAAGCAGACATTTTCAGGGCACATCTCTAAG...GATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTATCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CCA 90 bp | TGGATACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCATCAGAGACCAGACGTaGGGAAAATGCTCTAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: WIPSISHTHTHTRTYVSIIRDQT*GKCSKS Trigger: GCTTTTAGAGCATTTTCCCCACGTCTGGTCTCTGAT...GATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTATCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR GCA 90 bp | AAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCACAACCAAGGTGGCACTaGGGCATTCTAGGCATCCAA | + |
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Preference number: 2 (lower is better) Translates to: KNMNYSCRALSSTPRTISQPRWH*GILGIQ Trigger: TTGGATGCCTAGAATGCCGCAGTGCCACCTTGGTTG...TGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGGGCCACATAAAAGGTTCAGGCCAGCTTGGACTAGATAGTAAGACCTTGCACAGCTTAGAGATGTaGCCTGAAAATGTCTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: KVGHIKGSGQLGLDSKTLHSLEM*PENVCF Trigger: AAAGCAGACATTTTCAGGGCACATCTCTAAGCTGTG...CAAGGTCTTACTATCTAGTCCAAGCTGGCCTGAACCTTTTATGTGGCCCACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCAGACAGCTCACAACTAACTTAATGGTCTCATaGGCCATAGGATTGTACGGT | + |
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Preference number: 2 (lower is better) Translates to: FLQSTELNSQNHIRQLTTNLMVS*AIGLYG Trigger: ACCGTACAATCCTATGGCCCATGAGACCATTAAGTT...AGTTGTGAGCTGTCTGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CCA 90 bp | TACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCTTTATGTCTTCAACACGTCTaGTTCTGGCAGCAAGCAGTT | + |
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Preference number: 2 (lower is better) Translates to: YPASHTHTHTHVRTYQSLCLQHV*FWQQAV Trigger: AACTGCTTGCTGCCAGAACCAGACGTGTTGAAGACA...TAAAGATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | GTGGTTAAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCGTATGTGTTGATGTCTaGCATCAGACCAACCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: VVKNMNYSCRALSSTPRTVCVDV*HQTNQG Trigger: ACCTTGGTTGGTCTGATGTCAGACATCAACACATAC...GGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTTAACCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | TACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCTTTAACACAAACTTCAGTCTaGAATACCAACCGACCTGGA | + |
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Preference number: 2 (lower is better) Translates to: YPASHTHTHTHVRTYQSLTQTSV*NTNRPG Trigger: TCCAGGTCGGTTGGTATTTCAGACTGAAGTTTGTGT...TAAAGATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | AAGGTGGGCCACATAAAAGGTTCAGGCCAGCTTGGACTAGATAGTAAGACCTTGCAGTGGTTAAGAACATaGATTATTCTTGCAGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: KVGHIKGSGQLGLDSKTLQWLRT*IILAEH Trigger: GTGCTCTGCAAGAATAATTCATGTTCTTAACCACTG...CAAGGTCTTACTATCTAGTCCAAGCTGGCCTGAACCTTTTATGTGGCCCACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR GCA 90 bp | CCTCAGCAACACTGGATGGCTTCAATGATCTCTAAGAGAGAGACAGCAAAGATGGTAGCCTCTGTCTTGTaGGGAAAATGTCCAATAAGA | + |
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Preference number: 2 (lower is better) Translates to: PQQHWMASMISKRETAKMVASVL*GKCPIR Trigger: TCTTATTGGACATTTTCCGCACAAGACAGAGGCTAC...CATCTTTGCTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGTGTTGCTGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | GTGGTTAAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCAAGAATAAGAATAAGTaGTCACTGCTGGCTTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: VVKNMNYSCRALSSTPRTKNKNK*SLLACF Trigger: GAAGCAAGCCAGCAGTGATCACTTATTCTTATTCTT...GGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTTAACCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGGGCCACATAAAAGGTTCAGGCCAGCTTGGACTAGATAGTAAGACCTTGAAAATGTCTGCTTTCTaGTTGTACATAGCACTTGAA | + |
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Preference number: 2 (lower is better) Translates to: KVGHIKGSGQLGLDSKTLKMSAF*LYIALE Trigger: TTCAAGTGCTATGTACAAGCAGAAAGCAGACATTTT...CAAGGTCTTACTATCTAGTCCAAGCTGGCCTGAACCTTTTATGTGGCCCACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | TATAGAACTAAGACTATGTGCCATACATTATGTGTGCAAACTGCCAAAGAGCTTACTGGATGGCTTCAATaGTCTCTAAGAGAGAGACAG | + |
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Preference number: 2 (lower is better) Translates to: YRTKTMCHTLCVQTAKELTGWLQ*SLRERQ Trigger: CTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGT...AAGCTCTTTGGCAGTTTGCACACATAATGTATGGCACATAGTCTTAGTTCTATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CCA 90 bp | GTGGTTAAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCTCCCTGTGTTTTAACTaGCCTACAGTAATCTTATTA | + |
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Preference number: 2 (lower is better) Translates to: VVKNMNYSCRALSSTPRTSLCFN*PTVILL Trigger: TAATAAGATTACTGTAGGCCAGTTAAAACACAGGGA...GGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTTAACCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CAA 90 bp | CACTGCGGCATTCTAGGCATCCAATTTCCTTTTCAAGTTTGTCAGTaGTTTAAACTATTAATTTTCTCTAGCAGGATACAGTGTCACCAC | + |
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Preference number: 2 (lower is better) Translates to: HCGILGIQFPFQVCQ*FKLLIFSSRIQCHH Trigger: GTGGTGACACTGTATCCTGCTAGAGAAAATTAATAGTTTAAACAACTGACAAACTTGAAAAGGAAATTGGATGCCTAGAATGCCGCAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR TCA 90 bp | AGCATCGCATACGTGTACTTCAGTCTTAAAGAAAAACACAAGTGTATGTCTGTAAATCACATGCGCCTGTaGAACAGAATAAAGCTACAC | + |
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Preference number: 2 (lower is better) Translates to: SIAYVYFSLKEKHKCMSVNHMRL*NRIKLH Trigger: GTGTAGCTTTATTCTGTTTCACAGGCGCATGTGATT...TACAGACATACACTTGTGTTTTTCTTTAAGACTGAAGTACACGTATGCGATGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CAA 90 bp | TGGATACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCTCAACAGAGCCAGGCTaGGCCACATTCAAATCCTTC | + |
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Preference number: 3 (lower is better) Translates to: WIPSISHTHTHTRTYVSISTEPG*ATFKSF Trigger: GAAGGATTTGAATGTGGCCAAGCCTGGCTCTGTTGA...GATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTATCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR TCA 72 bp | ACAGTGGACTTAATTCTTAAAAGCCACTCTAACTGGTaGGCAGGAGTCAACAGAGCCAGGCTTGGCCACATT | + |
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Preference number: 3 (lower is better) Translates to: TVDLILKSHSNW*AGVNRARLGHI Trigger: AATGTGGCCAAGCCTGGCTCTGTTGACTCCTGCTCACCAGTTAGAGTGGCTTTTAAGAATTAAGTCCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR GCA 72 bp | GGTTCTGGCAGCAAGCAGTTACACAGCTTAGAGATGTaGCCTGAAAATGTCTGCTTTCTGCTTGTACATAGC | + |
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Preference number: 3 (lower is better) Translates to: GSGSKQLHSLEM*PENVCFLLVHS Trigger: GCTATGTACAAGCAGAAAGCAGACATTTTCAGGGCACATCTCTAAGCTGTGTAACTGCTTGCTGCCAGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CCA 72 bp | GGTGATTTGTTGTTTTGTCTTCAACACGTCTGGTTCTaGCAGCAAGCAGTTACACAGCTTAGAGATGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: GDLLFCLQHVWF*QQAVTQLRDVP Trigger: GGGCACATCTCTAAGCTGTGTAACTGCTTGCTGCCAGAACCAGACGTGTTGAAGACAAAACAACAAATCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CAA 90 bp | AAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCATGGTTTGCACAGTCCTaGAGCCCCAAACTGAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: KNMNYSCRALSSTPRTISWFAQS*SPKLKL Trigger: CAACTTCAGTTTGGGGCTCAAGGACTGTGCAAACCA...TGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CAA 90 bp | TTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCAGACAGCTCACAACTATGTCTGCTTTCTGCTaGTACATAGCACTTGAATCA | + |
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Preference number: 3 (lower is better) Translates to: FLQSTELNSQNHIRQLTTMSAFC*YIALES Trigger: TGATTCAAGTGCTATGTACAAGCAGAAAGCAGACAT...AGTTGTGAGCTGTCTGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR-3UTR CAA 90 bp | TTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCAGACAGCTCACAACTAAAGGAGGTGATTTGTaGTTTTGTCTTCAACACGTC | + |
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Preference number: 3 (lower is better) Translates to: FLQSTELNSQNHIRQLTTKGGDL*FCLQHV Trigger: GACGTGTTGAAGACAAAACAACAAATCACCTCCTTT...AGTTGTGAGCTGTCTGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR GCA 72 bp | TGTGCAAACTGCCAAAGAGCTTGGCATGATGATACCTaGCATTCAGGATGTAAGCAAGAGAATCTAGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: CANCQRAWHDDT*HSGCKQENLEF Trigger: GAACTCTAGATTCTCTTGCTTACATCCTGAATGGCAGGTATCATCATGCCAAGCTCTTTGGCAGTTTGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR TCA 72 bp | CGGTTATTTCTCCTCAGCAACACTGGATGGCTTCAATaGTCTCTAAGAGAGAGACAGCAAAGATGTAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: RLFLLSNTGWLQ*SLRERQQRCKE Trigger: TTCCTTACATCTTTGCTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGTGTTGCTGAGGAGAAATAACCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR GCA 72 bp | TCCCCTGACTCTTGCAACTATAGAACTAAGACTATGTaGCATACATTATGTGTGCAAACTGCCAAAGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: SPDSCNYRTKTM*HTLCVQTAKEL Trigger: AAGCTCTTTGGCAGTTTGCACACATAATGTATGGCACATAGTCTTAGTTCTATAGTTGCAAGAGTCAGGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CCA 72 bp | ACACACACAAACTTCAGTCTGAAATACCAACCGACCTaGACCATCACTACCAAAAGGGCTACAGTTTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: THTNFSLKYQPT*TITTKRATVFK Trigger: TTTAAAAACTGTAGCCCTTTTGGTAGTGATGGTCCAGGTCGGTTGGTATTTCAGACTGAAGTTTGTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CCA 72 bp | CCAGAAAGCCAAATGTTAATAAACTTAATGGTCTCATaGGCCATAGGATTGTACGGTTATTTCTCCTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: PESQMLINLMVS*AIGLYGYFSSA Trigger: TGCTGAGGAGAAATAACCGTACAATCCTATGGCCCATGAGACCATTAAGTTTATTAACATTTGGCTTTCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CCA 72 bp | ACACACAGAGACATGGAGGATGGATGGATGGATGGATaGATGGGCGGGAAGTTGATAAATAAAAATTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: THRDMEDGWMDG*MGGKLINKNLK Trigger: TTTTAAATTTTTATTTATCAACTTCCCGCCCATCCATCCATCCATCCATCCATCCTCCATGTCTCTGTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR TCA 90 bp | TTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCAGACAGCTCACAACTCCAGGCAAACATCCCTaGTCCTGGACGATGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: FLQSTELNSQNHIRQLTTPGKHP*SWTMAL Trigger: AAGAGCCATCGTCCAGGATCAGGGATGTTTGCCTGG...AGTTGTGAGCTGTCTGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR TCA 90 bp | AAGGTGGGCCACATAAAAGGTTCAGGCCAGCTTGGACTAGATAGTAAGACCTTGTCCACAGGGGCATCCTaGAAAGGGACCAGCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: KVGHIKGSGQLGLDSKTLSTGAS*KGTSIS Trigger: AGAGATGCTGGTCCCTTTTCAGGATGCCCCTGTGGA...CAAGGTCTTACTATCTAGTCCAAGCTGGCCTGAACCTTTTATGTGGCCCACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR TCA 90 bp | TGGATACCCAGCATCTCACACACACACACACACACACGTACGTACGTATCAATCCTCTTCACAACTTGCTaGGCTTTCATGACCTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: WIPSISHTHTHTRTYVSILFTTC*AFMTLV Trigger: AACCAAGGTCATGAAAGCTCAGCAAGTTGTGAAGAG...GATTGATACGTACGTACGTGTGTGTGTGTGTGTGTGTGAGATGCTGGGTATCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR CCA 90 bp | AGCATCGCATACGTGTACTTCAGTCTTAAAGAAAAACACAAGTGTATGTCTGTACTGTGCTCAACCAGCTaGCTCCACCTTCAGGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: SIAYVYFSLKEKHKCMSVLCSTS*LHLQGA Trigger: CGCACCCTGAAGGTGGAGCCAGCTGGTTGAGCACAG...TACAGACATACACTTGTGTTTTTCTTTAAGACTGAAGTACACGTATGCGATGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| 3UTR CAA 72 bp | ACTCTAACTGGTGAGCAGGAGTCAACAGAGCCAGGCTaGGCCACATTCAAATCCTTCCAAAAGCACTTTACA | + |
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Preference number: 4 (lower is better) Translates to: TLTGEQESTEPG*ATFKSFQKHFT Trigger: TGTAAAGTGCTTTTGGAAGGATTTGAATGTGGCCAAGCCTGGCTCTGTTGACTCCTGCTCACCAGTTAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR GCA 90 bp | TTCAACTTTCAGAGAAGGGTACCAAAGCACATGTCAAATATCGTTCATGAAGAATCCAACCCGGGACACTaGCTTGTCCTGCTCCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: FNFQRRVPKHMSNIVHEESNPGH*LVLLLC Trigger: ACAAAGGAGCAGGACAAGGCAGTGTCCCGGGTTGGA...TTCTTCATGAACGATATTTGACATGTGCTTTGGTACCCTTCTCTGAAAGTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR GCA 90 bp | GTGGTTAAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCTCGAGACCATCTATGTaGAAAACTACTGTTTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: VVKNMNYSCRALSSTPRTSRPSM*KTTVLA Trigger: GGCCAAAACAGTAGTTTTGCACATAGATGGTCTCGA...GGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTTAACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR CCA 90 bp | GTGGTTAAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCCACCATCAGCCAAATTaGAGGATTGAAGGATGTCAT | + |
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Preference number: 4 (lower is better) Translates to: VVKNMNYSCRALSSTPRTHHQPN*RIEGCH Trigger: ATGACATCCTTCAATCCTCCAATTTGGCTGATGGTG...GGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTTAACCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR CAA 90 bp | CCTCAGCAACACTGGATGGCTTCAATGATCTCTAAGAGAGAGACAGCAAAGATGACCCGGGACACTGCCTaGTCCTGCTCCTTTGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: PQQHWMASMISKRETAKMTRDTA*SCSFVG Trigger: TCCCACAAAGGAGCAGGACAAGGCAGTGTCCCGGGT...CATCTTTGCTGTCTCTCTCTTAGAGATCATTGAAGCCATCCAGTGTTGCTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR CAA 90 bp | TATAGAACTAAGACTATGTGCCATACATTATGTGTGCAAACTGCCAAAGAGCTTCTCGCTCTTCACAACTaGCTGAGCTTTCATGACCTT | + |
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Preference number: 5 (lower is better) Translates to: YRTKTMCHTLCVQTAKELLALHN*LSFHDL Trigger: AAGGTCATGAAAGCTCAGCAAGTTGTGAAGAGCGAG...AAGCTCTTTGGCAGTTTGCACACATAATGTATGGCACATAGTCTTAGTTCTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS-3UTR CAA 90 bp | AAGAACATGAATTATTCTTGCAGAGCACTGAGCTCAACTCCCAGAACCATATCATGCAAAACTACTGTTTaGGCCCGTTTGTTTGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: KNMNYSCRALSSTPRTISCKTTV*ARLFVV Trigger: AACTACAAACAAACGGGCCAAAACAGTAGTTTTGCA...TGATATGGTTCTGGGAGTTGAGCTCAGTGCTCTGCAAGAATAATTCATGTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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| CDS GCA 72 bp | GTTTCTCCTGGAGTTGTAGTCTTCTGGATGACATTCTaGAAGCTCAGCATCATCCCCAGCTCTCCCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VSPGVVVFWMTF*KLSIIPSSPFI Trigger: GATGAAGGGAGAGCTGGGGATGATGCTGAGCTTGCAGAATGTCATCCAGAAGACTACAACTCCAGGAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029125.10 |
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