Pregenerated sensors for ARL9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063820

Ensembl transcript IDs: ENSMUST00000071199.9, ENSMUST00000134197.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CAGCAGCCACCCCTTGGGGAGGTACATCTCCCAGTAGGAGCGGAATaGCTCACTGCCACCAATCTCCAGGAACTCCATTTGCCTATCTTC	+
Preference number: 5 (lower is better) Translates to: QQPPLGEVHLPVGAE*LTATNLQELHLPIF Trigger: GAAGATAGGCAAATGGAGTTCCTGGAGATTGGTGGCAGTGAGCCATTCCGCTCCTACTGGGAGATGTACCTCCCCAAGGGGTGGCTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS CCA 90 bp	GTTTGTGATCAGCTGAATCTACCACAAAGATCAGCAGCCACCCCTTaGGGAGGTACATCTCCCAGTAGGAGCGGAATGGCTCACTGCCAC	+
Preference number: 5 (lower is better) Translates to: VCDQLNLPQRSAATP*GGTSPSRSGMAHCH Trigger: GTGGCAGTGAGCCATTCCGCTCCTACTGGGAGATGTACCTCCCCAAGGGGTGGCTGCTGATCTTTGTGGTAGATTCAGCTGATCACAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS TCA 90 bp	CCACCAATCTCCAGGAACTCCATTTGCCTATCTTCAGAGTTGATGTaGACTGCATTTAAACCTTGGGTAGGAGCTGTGCTGTGCTGGACT	+
Preference number: 5 (lower is better) Translates to: PPISRNSICLSSELM*TAFKPWVGAVLCWT Trigger: AGTCCAGCACAGCACAGCTCCTACCCAAGGTTTAAATGCAGTTCACATCAACTCTGAAGATAGGCAAATGGAGTTCCTGGAGATTGGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS GCA 90 bp	AGGACACTGGTCTTTCCTGCTCCATCCAGACCTAGTACTAGGATCTaGTTATTTTCTACCCAGGCTACCCGGTCACACTTCATCAATTCT	+
Preference number: 5 (lower is better) Translates to: RTLVFPAPSRPSTRI*LFSTQATRSHFINS Trigger: AGAATTGATGAAGTGTGACCGGGTAGCCTGGGTAGAAAATAAGCAGATCCTAGTACTAGGTCTGGATGGAGCAGGAAAGACCAGTGTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071199.9
CDS CCA 90 bp	GGTCTTTGGCATCTTGCATGGTGGAGGGTATCTCTGAACCATTCTTaGTCACCTGAGTTCCAAACAAGAACAACTTTCTGTCGTTCCCCA	+
Preference number: 5 (lower is better) Translates to: GLWHLAWWRVSLNHS*SPEFQTRTTFCRSP Trigger: TGGGGAACGACAGAAAGTTGTTCTTGTTTGGAACTCAGGTGACCAAGAATGGTTCAGAGATACCCTCCACCATGCAAGATGCCAAAGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134197.2
CDS TCA 90 bp	ATGTGTAATCAGGTCTTTGGCATCTTGCATGGTGGAGGGTATCTCTaGACCATTCTTGGTCACCTGAGTTCCAAACAAGAACAACTTTCT	+
Preference number: 5 (lower is better) Translates to: MCNQVFGILHGGGYL*TILGHLSSKQEQLS Trigger: AGAAAGTTGTTCTTGTTTGGAACTCAGGTGACCAAGAATGGTTCAGAGATACCCTCCACCATGCAAGATGCCAAAGACCTGATTACACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134197.2
CDS CCA 72 bp	CAGCTGAATCTACCACAAAGATCAGCAGCCACCCCTTaGGGAGGTACATCTCCCAGTAGGAGCGGAATGGCT	+
Preference number: 6 (lower is better) Translates to: QLNLPQRSAATP*GGTSPSRSGMA Trigger: AGCCATTCCGCTCCTACTGGGAGATGTACCTCCCCAAGGGGTGGCTGCTGATCTTTGTGGTAGATTCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS CAA 72 bp	AAACCTTGGGTAGGAGCTGTGCTGTGCTGGACTCTGTaGGAAGCCAGCAAGTGGAGGACACTGGTCTTTCCT	+
Preference number: 6 (lower is better) Translates to: KPWVGAVLCWTL*EASKWRTLVFP Trigger: AGGAAAGACCAGTGTCCTCCACTTGCTGGCTTCCAACAGAGTCCAGCACAGCACAGCTCCTACCCAAGGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS CAA 90 bp	ACTGCATTTAAACCTTGGGTAGGAGCTGTGCTGTGCTGGACTCTGTaGGAAGCCAGCAAGTGGAGGACACTGGTCTTTCCTGCTCCATCC	+
Preference number: 6 (lower is better) Translates to: TAFKPWVGAVLCWTL*EASKWRTLVFPAPS Trigger: GGATGGAGCAGGAAAGACCAGTGTCCTCCACTTGCTGGCTTCCAACAGAGTCCAGCACAGCACAGCTCCTACCCAAGGTTTAAATGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS GCA 72 bp	GGAGGTACATCTCCCAGTAGGAGCGGAATGGCTCACTaGCACCAATCTCCAGGAACTCCATTTGCCTATCTT	+
Preference number: 6 (lower is better) Translates to: GGTSPSRSGMAH*HQSPGTPFAYL Trigger: AAGATAGGCAAATGGAGTTCCTGGAGATTGGTGGCAGTGAGCCATTCCGCTCCTACTGGGAGATGTACCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS CCA 72 bp	ACTGCATTTAAACCTTGGGTAGGAGCTGTGCTGTGCTaGACTCTGTTGGAAGCCAGCAAGTGGAGGACACTG	+
Preference number: 6 (lower is better) Translates to: TAFKPWVGAVLC*TLLEASKWRTL Trigger: CAGTGTCCTCCACTTGCTGGCTTCCAACAGAGTCCAGCACAGCACAGCTCCTACCCAAGGTTTAAATGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS GCA 72 bp	GTCTTTCCTGCTCCATCCAGACCTAGTACTAGGATCTaGTTATTTTCTACCCAGGCTACCCGGTCACACTTC	+
Preference number: 6 (lower is better) Translates to: VFPAPSRPSTRI*LFSTQATRSHF Trigger: GAAGTGTGACCGGGTAGCCTGGGTAGAAAATAAGCAGATCCTAGTACTAGGTCTGGATGGAGCAGGAAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071199.9
CDS GCA 72 bp	TCTGTGGCCAGATGTGTAATCAGGTCTTTGGCATCTTaGATGGTGGAGGGTATCTCTGAACCATTCTTGGTC	+
Preference number: 6 (lower is better) Translates to: SVARCVIRSLAS*MVEGISEPFLV Trigger: GACCAAGAATGGTTCAGAGATACCCTCCACCATGCAAGATGCCAAAGACCTGATTACACATCTGGCCACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134197.2
CDS TCA 72 bp	CAGGTCTTTGGCATCTTGCATGGTGGAGGGTATCTCTaGACCATTCTTGGTCACCTGAGTTCCAAACAAGAA	+
Preference number: 6 (lower is better) Translates to: QVFGILHGGGYL*TILGHLSSKQE Trigger: TTCTTGTTTGGAACTCAGGTGACCAAGAATGGTTCAGAGATACCCTCCACCATGCAAGATGCCAAAGACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134197.2
CDS TCA 72 bp	TCCAGGAACTCCATTTGCCTATCTTCAGAGTTGATGTaGACTGCATTTAAACCTTGGGTAGGAGCTGTGCTG	+
Preference number: 6 (lower is better) Translates to: SRNSICLSSELM*TAFKPWVGAVL Trigger: CAGCACAGCTCCTACCCAAGGTTTAAATGCAGTTCACATCAACTCTGAAGATAGGCAAATGGAGTTCCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071199.9 ENSMUST00000134197.2
CDS GCA 72 bp	AGCCAAAGCATCGTGGATATCTGTAATGTGATAAGCTaGTTCGAGATCCTGTTTGTTGGCAAACACAACGAG	+
Preference number: 6 (lower is better) Translates to: SQSIVDICNVIS*FEILFVGKHNE Trigger: CTCGTTGTGTTTGCCAACAAACAGGATCTCGAAGCAGCTTATCACATTACAGATATCCACGATGCTTTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134197.2
CDS CCA 72 bp	CATCTTGCATGGTGGAGGGTATCTCTGAACCATTCTTaGTCACCTGAGTTCCAAACAAGAACAACTTTCTGT	+
Preference number: 6 (lower is better) Translates to: HLAWWRVSLNHS*SPEFQTRTTFC Trigger: ACAGAAAGTTGTTCTTGTTTGGAACTCAGGTGACCAAGAATGGTTCAGAGATACCCTCCACCATGCAAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134197.2

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