RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARL6IP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026960

Ensembl transcript IDs: ENSMUST00000028336.7

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp ATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCAAACTTCAAAAACCATCATaGCTTTCACCAACAACGTTG +
Preference number: 2 (lower is better)
Translates to: IVQLQASLKPTEPASVSKLQKPS*LSPTTL
Trigger: CAACGTTGTTGGTGAAAGTCATGATGGTTTTTGAAG...TTTGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
3UTR-3UTR TCA 90 bp GACTGCAGATGTAACACACACACACACACACACACACACACACTCACTTGCCACCATTTCAAAGTCTTCTaGGTCAGCAATTTCGTTTCT +
Preference number: 2 (lower is better)
Translates to: DCRCNTHTHTHTHTLTCHHFKVF*VSNFVS
Trigger: AGAAACGAAATTGCTGACTCAGAAGACTTTGAAATG...GTGGCAAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACATCTGCAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
3UTR-3UTR GCA 90 bp ATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCAAACAGCAATTTCGTTTCTaGTACTTCAAAAACCATCAT +
Preference number: 2 (lower is better)
Translates to: IVQLQASLKPTEPASVSKQQFRF*YFKNHH
Trigger: ATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTG...TTTGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
3UTR-3UTR CAA 90 bp GACTGCAGATGTAACACACACACACACACACACACACACACACTCACTTGCCACCTGGGCTTGAAGGTCTaGCTAACACACTTGGCCTCA +
Preference number: 3 (lower is better)
Translates to: DCRCNTHTHTHTHTLTCHLGLKV*LTHLAS
Trigger: TGAGGCCAAGTGTGTTAGCAAGACCTTCAAGCCCAG...GTGGCAAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACATCTGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR CCA 90 bp ATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCAAATGGAAAGGGCTTGGATaGGCCACCGCCGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: IVQLQASLKPTEPASVSKWKGLG*ATAEPG
Trigger: CCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCA...TTTGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR GCA 90 bp ATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCAAACCGGGAAGATGCCGTTaGGCTTATCCGGCAGGACCG +
Preference number: 4 (lower is better)
Translates to: IVQLQASLKPTEPASVSKPGRCR*AYPAGP
Trigger: CGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGG...TTTGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR TCA 90 bp TCATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCACTTGAACCTAGCAGGTaGAAGAGGAGTGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: SLCSYRLASNPQNLLLSPLEPSR*KRSGWK
Trigger: TTTCCACCCACTCCTCTTTCACCTGCTAGGTTCAAG...TGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
3UTR CAA 72 bp CCCACAGAACCTGCTTCTGTCTCCAAAATGCTGGGCTaGAAGGTCTTGCTAACACACTTGGCCTCAGTACTG +
Preference number: 4 (lower is better)
Translates to: PTEPASVSKMLG*KVLLTHLASVL
Trigger: CAGTACTGAGGCCAAGTGTGTTAGCAAGACCTTCAAGCCCAGCATTTTGGAGACAGAAGCAGGTTCTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR CCA 90 bp CTGAGTCAGCAATTTCGTTTCTGCTACTTCAAAAACCATCATGACTTTCACCAAAAGTCGCGGGCCACTTaGTCGCATCCCTCGTCTTCG +
Preference number: 4 (lower is better)
Translates to: LSQQFRFCYFKNHHDFHQKSRAT*SHPSSS
Trigger: CGAAGACGAGGGATGCGACCAAGTGGCCCGCGACTT...TTGGTGAAAGTCATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR GCA 90 bp TCATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCAAATACCATTCAAAATTaGCATGCTGTAGCCCATGTG +
Preference number: 4 (lower is better)
Translates to: SLCSYRLASNPQNLLLSPNTIQN*HAVAHV
Trigger: CACATGGGCTACAGCATGGCAATTTTGAATGGTATT...TGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR TCA 90 bp CTGAGTCAGCAATTTCGTTTCTGCTACTTCAAAAACCATCATGACTTTCACCAAGGCACCATGCCACAGTaGGAGCAGCGACAATACCAT +
Preference number: 4 (lower is better)
Translates to: LSQQFRFCYFKNHHDFHQGTMPQ*EQRQYH
Trigger: ATGGTATTGTCGCTGCTCTCACTGTGGCATGGTGCC...TTGGTGAAAGTCATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR CCA 90 bp CTGAGTCAGCAATTTCGTTTCTGCTACTTCAAAAACCATCATGACTTTCACCAAGCAGCGAACAGAGAATaGAAAGGGCTTGGATGGGCC +
Preference number: 4 (lower is better)
Translates to: LSQQFRFCYFKNHHDFHQAANRE*KGLGWA
Trigger: GGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGC...TTGGTGAAAGTCATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR GCA 90 bp ATTTCAAAGTCTTCTGAGTCAGCAATTTCGTTTCTGCTACTTCAAAAACCATCACATTCAAAATTGCCATaGTGTAGCCCATGTGGAAAG +
Preference number: 4 (lower is better)
Translates to: ISKSSESAISFLLLQKPSHSKLP*CSPCGK
Trigger: CTTTCCACATGGGCTACAGCATGGCAATTTTGAATG...TGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAGAAGACTTTGAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS GCA 90 bp GCCGAGCCTGGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCGTTaGGCTTATCCGGCAGGACCGGAGACCCGTCCCCGACCCGGGGGA +
Preference number: 5 (lower is better)
Translates to: AEPGFAWPQWPGRCR*AYPAGPETRPRPGG
Trigger: TCCCCCGGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS GCA 90 bp GCCACCGCCGAGCCTGGGTTCGCTTGGCCGCAGTGGCCGGGAAGATaGCGTTGCGCTTATCCGGCAGGACCGGAGACCCGTCCCCGACCC +
Preference number: 5 (lower is better)
Translates to: ATAEPGFAWPQWPGR*RCAYPAGPETRPRP
Trigger: GGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp GGGCTTGGATGGGCCACCGCCGAGCCTGGGTTCGCTTGGCCGCAGTaGCCGGGAAGATGCCGTTGCGCTTATCCGGCAGGACCGGAGACC +
Preference number: 5 (lower is better)
Translates to: GLGWATAEPGFAWPQ*PGRCRCAYPAGPET
Trigger: GGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp GTCCCCCTGAGTGTAGTCGGAATACCCGGGCCGAGTCGCAGGGCCTaGGGTAACCTGACGGCGCCTCCGCGCGCCCGCAAACCTCCAACT +
Preference number: 5 (lower is better)
Translates to: VPLSVVGIPGPSRRA*GNLTAPPRARKPPT
Trigger: AGTTGGAGGTTTGCGGGCGCGCGGAGGCGCCGTCAGGTTACCCCAGGCCCTGCGACTCGGCCCGGGTATTCCGACTACACTCAGGGGGAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp GACGACGCCCTGGCTGAGAACTCTGCCCGCAAGTCGCGGGCCACTTaGTCGCATCCCTCGTCTTCGTCGCCTTCGCCCTCACCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: DDALAENSARKSRAT*SHPSSSSPSPSPQL
Trigger: CAGCTGGGGTGAGGGCGAAGGCGACGAAGACGAGGGATGCGACCAAGTGGCCCGCGACTTGCGGGCAGAGTTCTCAGCCAGGGCGTCGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp GGAGGACGGCGAACAGCAGCGAACAGAGAATGGAAAGGGCTTGGATaGGCCACCGCCGAGCCTGGGTTCGCTTGGCCGCAGTGGCCGGGA +
Preference number: 5 (lower is better)
Translates to: GGRRTAANREWKGLG*ATAEPGFAWPQWPG
Trigger: TCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp GAATGGAAAGGGCTTGGATGGGCCACCGCCGAGCCTGGGTTCGCTTaGCCGCAGTGGCCGGGAAGATGCCGTTGCGCTTATCCGGCAGGA +
Preference number: 5 (lower is better)
Translates to: EWKGLGWATAEPGFA*PQWPGRCRCAYPAG
Trigger: TCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp AGCGAACAGAGAATGGAAAGGGCTTGGATGGGCCACCGCCGAGCCTaGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCGTTGCGCTTA +
Preference number: 5 (lower is better)
Translates to: SEQRMERAWMGHRRA*VRLAAVAGKMPLRL
Trigger: TAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 90 bp CGAGAAGGAAAGCAAGGAGGACGGCGAACAGCAGCGAACAGAGAATaGAAAGGGCTTGGATGGGCCACCGCCGAGCCTGGGTTCGCTTGG +
Preference number: 5 (lower is better)
Translates to: REGKQGGRRTAANRE*KGLGWATAEPGFAW
Trigger: CCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTCCTCCTTGCTTTCCTTCTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR CAA 90 bp TCATTGTGCAGCTACAGGCTAGCCTCAAACCCACAGAACCTGCTTCTGTCTCCACAAGTCGCGGGCCACTaGGTCGCATCCCTCGTCTTC +
Preference number: 5 (lower is better)
Translates to: SLCSYRLASNPQNLLLSPQVAGH*VASLVF
Trigger: GAAGACGAGGGATGCGACCAAGTGGCCCGCGACTTG...TGGAGACAGAAGCAGGTTCTGTGGGTTTGAGGCTAGCCTGTAGCTGCACAATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS-3UTR CAA 90 bp CTGAGTCAGCAATTTCGTTTCTGCTACTTCAAAAACCATCATGACTTTCACCAATGTCCAGTCAGTTTCTaGAACCTAGCAGGTGAAAGA +
Preference number: 5 (lower is better)
Translates to: LSQQFRFCYFKNHHDFHQCPVSF*NLAGER
Trigger: TCTTTCACCTGCTAGGTTCAAGAAACTGACTGGACA...TTGGTGAAAGTCATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CAA 90 bp CGCCGAGCCTGGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCGTaGCGCTTATCCGGCAGGACCGGAGACCCGTCCCCGACCCGGGGG +
Preference number: 6 (lower is better)
Translates to: RRAWVRLAAVAGKMP*RLSGRTGDPSPTRG
Trigger: CCCCCGGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS GCA 72 bp GGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCGTTaGGCTTATCCGGCAGGACCGGAGACCCGTCCCCGA +
Preference number: 6 (lower is better)
Translates to: GFAWPQWPGRCR*AYPAGPETRPR
Trigger: TCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp AGTGTAGTCGGAATACCCGGGCCGAGTCGCAGGGCCTaGGGTAACCTGACGGCGCCTCCGCGCGCCCGCAAA +
Preference number: 6 (lower is better)
Translates to: SVVGIPGPSRRA*GNLTAPPRARK
Trigger: TTTGCGGGCGCGCGGAGGCGCCGTCAGGTTACCCCAGGCCCTGCGACTCGGCCCGGGTATTCCGACTACACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp TGGGCCACCGCCGAGCCTGGGTTCGCTTGGCCGCAGTaGCCGGGAAGATGCCGTTGCGCTTATCCGGCAGGA +
Preference number: 6 (lower is better)
Translates to: WATAEPGFAWPQ*PGRCRCAYPAG
Trigger: TCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CAA 72 bp TGGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCGTaGCGCTTATCCGGCAGGACCGGAGACCCGTCCCCG +
Preference number: 6 (lower is better)
Translates to: WVRLAAVAGKMP*RLSGRTGDPSP
Trigger: CGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp GGGCTTGGATGGGCCACCGCCGAGCCTGGGTTCGCTTaGCCGCAGTGGCCGGGAAGATGCCGTTGCGCTTAT +
Preference number: 6 (lower is better)
Translates to: GLGWATAEPGFA*PQWPGRCRCAY
Trigger: ATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp AGAATGGAAAGGGCTTGGATGGGCCACCGCCGAGCCTaGGTTCGCTTGGCCGCAGTGGCCGGGAAGATGCCG +
Preference number: 6 (lower is better)
Translates to: RMERAWMGHRRA*VRLAAVAGKMP
Trigger: CGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp CGAACAGCAGCGAACAGAGAATGGAAAGGGCTTGGATaGGCCACCGCCGAGCCTGGGTTCGCTTGGCCGCAG +
Preference number: 6 (lower is better)
Translates to: RTAANREWKGLG*ATAEPGFAWPQ
Trigger: CTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp ACGGCGAACAGCAGCGAACAGAGAATGGAAAGGGCTTaGATGGGCCACCGCCGAGCCTGGGTTCGCTTGGCC +
Preference number: 6 (lower is better)
Translates to: TANSSEQRMERA*MGHRRAWVRLA
Trigger: GGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CAA 72 bp GACGGCGAACAGCAGCGAACAGAGAATGGAAAGGGCTaGGATGGGCCACCGCCGAGCCTGGGTTCGCTTGGC +
Preference number: 6 (lower is better)
Translates to: DGEQQRTENGKG*DGPPPSLGSLG
Trigger: GCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7
CDS CCA 72 bp AAGCAAGGAGGACGGCGAACAGCAGCGAACAGAGAATaGAAAGGGCTTGGATGGGCCACCGCCGAGCCTGGG +
Preference number: 6 (lower is better)
Translates to: KQGGRRTAANRE*KGLGWATAEPG
Trigger: CCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTCCTCCTTGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028336.7