Pregenerated sensors for ARL6IP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035199Ensembl transcript IDs: ENSMUST00000044681.7
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTATGGGTCATATCGGAGATCTTAGCAGTGGGCCTGTGCATGCATaGTGCCTTGGAGAGGTGGGTGGTAAGACGTGCACCTTCTGTTTA | + |
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Preference number: 1 (lower is better) Translates to: SMGHIGDLSSGPVHA*CLGEVGGKTCTFCL Trigger: TAAACAGAAGGTGCACGTCTTACCACCCACCTCTCCAAGGCATCATGCATGCACAGGCCCACTGCTAAGATCTCCGATATGACCCATAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CCA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATaGCACTGTGGCCGTCTAATCCACACTCTTTTTCAAAAGCACACC | + |
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Preference number: 1 (lower is better) Translates to: HIASRLYRDFFPTIR*HCGRLIHTLFQKHT Trigger: GGTGTGCTTTTGAAAAAGAGTGTGGATTAGACGGCCACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR-3UTR GCA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTCAGTGGGCCTGTGCATaGATGATGCCTTGGAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: HIASRLYRDFFPTIRWHCQWACA*MMPWRG Trigger: ACCTCTCCAAGGCATCATGCATGCACAGGCCCACTG...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR-3UTR CCA 90 bp | TCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGGATGCCTTGGAGAGGTaGGTGGTAAGACGTGCACCT | + |
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Preference number: 2 (lower is better) Translates to: STLFFKSTPDTSDTTGEWDALER*VVRRAP Trigger: AGGTGCACGTCTTACCACCCACCTCTCCAAGGCATC...CCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CAA 90 bp | GCACACCGGACACTTCAGACACAACGGGAGAGTGGGTCTGTATTTTaGCAGTTTCTGAGGCCTTCTATGGGTCATATCGGAGATCTTAGC | + |
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Preference number: 2 (lower is better) Translates to: AHRTLQTQRESGSVF*QFLRPSMGHIGDLS Trigger: GCTAAGATCTCCGATATGACCCATAGAAGGCCTCAGAAACTGCAAAAATACAGACCCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR-3UTR GCA 90 bp | TGGCCGTCTAATCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAAGTGGGTGGTAAGACGTaGACCTTCTGTTTAAAAACC | + |
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Preference number: 2 (lower is better) Translates to: WPSNPHSFSKAHRTLQTQVGGKT*TFCLKT Trigger: GGTTTTTAAACAGAAGGTGCACGTCTTACCACCCAC...TTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGATTAGACGGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR TCA 72 bp | CATATCGGAGATCTTAGCAGTGGGCCTGTGCATGCATaGTGCCTTGGAGAGGTGGGTGGTAAGACGTGCACC | + |
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Preference number: 3 (lower is better) Translates to: HIGDLSSGPVHA*CLGEVGGKTCT Trigger: GGTGCACGTCTTACCACCCACCTCTCCAAGGCATCATGCATGCACAGGCCCACTGCTAAGATCTCCGATATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR-3UTR CAA 90 bp | TCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGTGCATGCATGATGCCTaGGAGAGGTGGGTGGTAAGA | + |
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Preference number: 3 (lower is better) Translates to: STLFFKSTPDTSDTTGEWCMHDA*ERWVVR Trigger: TCTTACCACCCACCTCTCCAAGGCATCATGCATGCA...CCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CCA 72 bp | TCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATaGCACTGTGGCCGTCTAATCCACACTCTTTTTCAA | + |
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Preference number: 3 (lower is better) Translates to: SRLYRDFFPTIR*HCGRLIHTLFQ Trigger: TTGAAAAAGAGTGTGGATTAGACGGCCACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR TCA 72 bp | AGAAACAGGCTGACACACAACATCCTCGACTTTAACTaGTCTTCATGTCCTCCACATTGCCTCCAGGCTCTA | + |
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Preference number: 3 (lower is better) Translates to: RNRLTHNILDFN*SSCPPHCLQAL Trigger: TAGAGCCTGGAGGCAATGTGGAGGACATGAAGATCAGTTAAAGTCGAGGATGTTGTGTGTCAGCCTGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CCA 72 bp | AAAAGCACACCGGACACTTCAGACACAACGGGAGAGTaGGTCTGTATTTTTGCAGTTTCTGAGGCCTTCTAT | + |
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Preference number: 3 (lower is better) Translates to: KSTPDTSDTTGE*VCIFAVSEAFY Trigger: ATAGAAGGCCTCAGAAACTGCAAAAATACAGACCCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CAA 72 bp | GAGATCTTAGCAGTGGGCCTGTGCATGCATGATGCCTaGGAGAGGTGGGTGGTAAGACGTGCACCTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: EILAVGLCMHDA*ERWVVRRAPSV Trigger: AACAGAAGGTGCACGTCTTACCACCCACCTCTCCAAGGCATCATGCATGCACAGGCCCACTGCTAAGATCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | TCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGATTTGGAAATGTCCCTaGAGTCCGGCCGGGCGAAAC | + |
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Preference number: 4 (lower is better) Translates to: STLFFKSTPDTSDTTGEWIWKCP*SPAGRN Trigger: GTTTCGCCCGGCCGGACTTCAGGGACATTTCCAAAT...CCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR GCA 90 bp | CCTCCACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCAGTCTTTATTGTGCGCTaGCCACACGAACCCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: PPHCLQALQGLLPYDKMAVFIVR*PHEPHE Trigger: TTCATGGGGTTCGTGTGGGCAGCGCACAATAAAGAC...TGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | CACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGGTCTACACCAGCACCACAATaGCTCCTCCGAGGATCATGT | + |
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Preference number: 4 (lower is better) Translates to: HSFSKAHRTLQTQRESGSTPAPQ*LLRGSC Trigger: ACATGATCCTCGGAGGAGTCATTGTGGTGCTGGTGT...AGACCCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | TGGCCGTCTAATCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAAAGTAGCTGGCTAGCATaGCCACCATCACGAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: WPSNPHSFSKAHRTLQTQSSWLA*PPSRRP Trigger: CGGCCTTCGTGATGGTGGTCATGCTAGCCAGCTACT...TTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGATTAGACGGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | TGTCCTCCACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGCGAACACAAAGACCATaGCACCCCCGAACATGGATA | + |
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Preference number: 4 (lower is better) Translates to: CPPHCLQALQGLLPYDKMRTQRP*HPRTWI Trigger: TATCCATGTTCGGGGGTGTCATGGTCTTTGTGTTCG...CATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTGGAGGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR GCA 90 bp | TCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGAGGATGTCTTTATTGTaGGCTGCCCACACGAACCCC | + |
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Preference number: 4 (lower is better) Translates to: STLFFKSTPDTSDTTGEWRMSLL*AAHTNP Trigger: GGGGTTCGTGTGGGCAGCGCACAATAAAGACATCCT...CCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR GCA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTGCGAAGTCTCAGGGATaGGTGGATGAACATCAACAG | + |
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Preference number: 4 (lower is better) Translates to: HIASRLYRDFFPTIRWHCAKSQG*VDEHQQ Trigger: CTGTTGATGTTCATCCACGCATCCCTGAGACTTCGC...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | CACACAACATCCTCGACTTTAACTGATCTTCATGTCCTCCACATTGCCTCCAGGCCCCGAACATGGATATaGGGAAGTAGCTGGCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: HTTSSTLTDLHVLHIASRPRTWI*GSSWLA Trigger: TGCTAGCCAGCTACTTCCTCATATCCATGTTCGGGG...CCTGGAGGCAATGTGGAGGACATGAAGATCAGTTAAAGTCGAGGATGTTGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CCA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTCCACCACCAGGTAGTTaGTCTGGTAATAGAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: HIASRLYRDFFPTIRWHCPPPGS*SGNRAD Trigger: ATCTGCTCTATTACCAGACCAACTACCTGGTGGTGG...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR GCA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTGGTAATAGAGCAGATTaGTCACTACACGGTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: HIASRLYRDFFPTIRWHCGNRAD*SLHGCS Trigger: GGAACAACCGTGTAGTGAGCAATCTGCTCTATTACC...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | TGGCCGTCTAATCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAAACAGCAAAGGAAGAGTaGTGCCGAACACAAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: WPSNPHSFSKAHRTLQTQTAKEE*CRTQRP Trigger: TGGTCTTTGTGTTCGGCATCACTCTTCCTTTGCTGT...TTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGATTAGACGGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| 3UTR CAA 72 bp | ACACTTCAGACACAACGGGAGAGTGGGTCTGTATTTTaGCAGTTTCTGAGGCCTTCTATGGGTCATATCGGA | + |
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Preference number: 4 (lower is better) Translates to: TLQTQRESGSVF*QFLRPSMGHIG Trigger: TCCGATATGACCCATAGAAGGCCTCAGAAACTGCAAAAATACAGACCCACTCTCCCGTTGTGTCTGAAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR TCA 90 bp | TGTCCTCCACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGAGTCAGCAAATTTGTTaGTGTTATCTTCCTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: CPPHCLQALQGLLPYDKMSQQIC*CYLPAV Trigger: AACAGCAGGAAGATAACATCAACAAATTTGCTGACT...CATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTGGAGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR GCA 90 bp | AACAAAAATAATACCGCTAAACTAACATACCCGACACATCAGAGTCTTAGGGGATTGATGTTATCTTCCTaGTGTTCCAAGGCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NKNNTAKLTYPTHQSLRGLMLSS*CSKASR Trigger: CCTGGATGCCTTGGAACAGCAGGAAGATAACATCAA...TCCCCTAAGACTCTGATGTGTCGGGTATGTTAGTTTAGCGGTATTATTTTTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS GCA 90 bp | TGGGTACTGCTTCTTCATCCGGCGGAGGATGTCTTTATTGTGCGCTaGCCACACGAACCCCATGAACACCAGCACCACAATGACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: WVLLLHPAEDVFIVR*PHEPHEHQHHNDSS Trigger: GGAGGAGTCATTGTGGTGCTGGTGTTCATGGGGTTCGTGTGGGCAGCGCACAATAAAGACATCCTCCGCCGGATGAAGAAGCAGTACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS GCA 90 bp | GCCGTTGGGTACTGCTTCTTCATCCGGCGGAGGATGTCTTTATTGTaGGCTGCCCACACGAACCCCATGAACACCAGCACCACAATGACT | + |
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Preference number: 5 (lower is better) Translates to: AVGYCFFIRRRMSLL*AAHTNPMNTSTTMT Trigger: AGTCATTGTGGTGCTGGTGTTCATGGGGTTCGTGTGGGCAGCGCACAATAAAGACATCCTCCGCCGGATGAAGAAGCAGTACCCAACGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | CCACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGCGGAGGATGTCTTTATaGTGCGCTGCCCACACGAAC | + |
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Preference number: 5 (lower is better) Translates to: PHCLQALQGLLPYDKMALRRMSL*CAAHTN Trigger: GTTCGTGTGGGCAGCGCACAATAAAGACATCCTCCG...CAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTCCATCACGAAGGCCGTaGGGTACTGCTTCTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: HIASRLYRDFFPTIRWHCPSRRP*GTASSS Trigger: GGATGAAGAAGCAGTACCCAACGGCCTTCGTGATGG...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | CACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAACGGGAGAGTGGGTCTCCTCCGAGGATCATGTaGAAGGGGCTCAGAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: HSFSKAHRTLQTQRESGSPPRIM*KGLRNP Trigger: TGGGTTTCTGAGCCCCTTCAACATGATCCTCGGAGG...AGACCCACTCTCCCGTTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | CACACAACATCCTCGACTTTAACTGATCTTCATGTCCTCCACATTGCCTCCAGGAGCTTGTTCTTGAGGTaGCGAAGTCTCAGGGATGCG | + |
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Preference number: 5 (lower is better) Translates to: HTTSSTLTDLHVLHIASRSLFLR*RSLRDA Trigger: CGCATCCCTGAGACTTCGCAACCTCAAGAACAAGCT...CCTGGAGGCAATGTGGAGGACATGAAGATCAGTTAAAGTCGAGGATGTTGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | CACATTGCCTCCAGGCTCTACAGGGACTTCTTCCCTACGATAAGATGGCACTGTTTGCTCACTACACGGTaGTTCCATTTGGAAATGTCC | + |
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Preference number: 5 (lower is better) Translates to: HIASRLYRDFFPTIRWHCLLTTR*FHLEMS Trigger: GGACATTTCCAAATGGAACAACCGTGTAGTGAGCAA...ACAGTGCCATCTTATCGTAGGGAAGAAGTCCCTGTAGAGCCTGGAGGCAATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS CCA 90 bp | GAAACCCAACAACCGAAATCATCATGGCAGCCACCACCAGGTAGTTaGTCTGGTAATAGAGCAGATTGCTCACTACACGGTTGTTCCATT | + |
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Preference number: 5 (lower is better) Translates to: ETQQPKSSWQPPPGS*SGNRADCSLHGCSI Trigger: AATGGAACAACCGTGTAGTGAGCAATCTGCTCTATTACCAGACCAACTACCTGGTGGTGGCTGCCATGATGATTTCGGTTGTTGGGTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS-3UTR CAA 90 bp | TGGCCGTCTAATCCACACTCTTTTTCAAAAGCACACCGGACACTTCAGACACAAACACGGTTGTTCCATTaGGAAATGTCCCTGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: WPSNPHSFSKAHRTLQTQTRLFH*EMSLKS Trigger: GGACTTCAGGGACATTTCCAAATGGAACAACCGTGT...TTGTGTCTGAAGTGTCCGGTGTGCTTTTGAAAAAGAGTGTGGATTAGACGGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS GCA 90 bp | CATTTTATTTTCCAGCTTGTTCTTGAGGTTGCGAAGTCTCAGGGATaGGTGGATGAACATCAACAGCAAAGGAAGAGTGATGCCGAACAC | + |
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Preference number: 5 (lower is better) Translates to: HFIFQLVLEVAKSQG*VDEHQQQRKSDAEH Trigger: GTGTTCGGCATCACTCTTCCTTTGCTGTTGATGTTCATCCACGCATCCCTGAGACTTCGCAACCTCAAGAACAAGCTGGAAAATAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS CAA 90 bp | AAGGCCGTTGGGTACTGCTTCTTCATCCGGCGGAGGATGTCTTTATaGTGCGCTGCCCACACGAACCCCATGAACACCAGCACCACAATG | + |
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Preference number: 6 (lower is better) Translates to: KAVGYCFFIRRRMSL*CAAHTNPMNTSTTM Trigger: CATTGTGGTGCTGGTGTTCATGGGGTTCGTGTGGGCAGCGCACAATAAAGACATCCTCCGCCGGATGAAGAAGCAGTACCCAACGGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS CCA 72 bp | CAACCGAAATCATCATGGCAGCCACCACCAGGTAGTTaGTCTGGTAATAGAGCAGATTGCTCACTACACGGT | + |
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Preference number: 6 (lower is better) Translates to: QPKSSWQPPPGS*SGNRADCSLHG Trigger: ACCGTGTAGTGAGCAATCTGCTCTATTACCAGACCAACTACCTGGTGGTGGCTGCCATGATGATTTCGGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS CCA 72 bp | AGCTTGTTCTTGAGGTTGCGAAGTCTCAGGGATGCGTaGATGAACATCAACAGCAAAGGAAGAGTGATGCCG | + |
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Preference number: 6 (lower is better) Translates to: SLFLRLRSLRDA*MNINSKGRVMP Trigger: CGGCATCACTCTTCCTTTGCTGTTGATGTTCATCCACGCATCCCTGAGACTTCGCAACCTCAAGAACAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS CAA 72 bp | AACACCAGCACCACAATGACTCCTCCGAGGATCATGTaGAAGGGGCTCAGAAACCCAACAACCGAAATCATC | + |
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Preference number: 6 (lower is better) Translates to: NTSTTMTPPRIM*KGLRNPTTEII Trigger: GATGATTTCGGTTGTTGGGTTTCTGAGCCCCTTCAACATGATCCTCGGAGGAGTCATTGTGGTGCTGGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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| CDS GCA 72 bp | CCACCACCAGGTAGTTGGTCTGGTAATAGAGCAGATTaGTCACTACACGGTTGTTCCATTTGGAAATGTCCC | + |
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Preference number: 6 (lower is better) Translates to: PPPGSWSGNRAD*SLHGCSIWKCP Trigger: GGGACATTTCCAAATGGAACAACCGTGTAGTGAGCAATCTGCTCTATTACCAGACCAACTACCTGGTGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044681.7 |
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