Pregenerated sensors for ARL6IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030654Ensembl transcript IDs: ENSMUST00000032888.10, ENSMUST00000203154.3, ENSMUST00000204005.3
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCATCTTAAAGGAAGGAAGTTGTCAAAATGAAAGGAAGTCACACTaGCGGGGAATGTACCCAGCTACACCTGGCACTAGAGCCCGCACA | + |
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Preference number: 1 (lower is better) Translates to: SILKEGSCQNERKSH*RGMYPATPGTRART Trigger: TGTGCGGGCTCTAGTGCCAGGTGTAGCTGGGTACATTCCCCGTCAGTGTGACTTCCTTTCATTTTGACAACTTCCTTCCTTTAAGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR TCA 90 bp | ACCGCTGCTTACAGTGCTAGGGAGGTGAGAGAACAGATACACACAGGGGCAGGCTTAACAAGGGCAGAGTaGGGGAAGCAACGAGCCACT | + |
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Preference number: 2 (lower is better) Translates to: TAAYSAREVREQIHTGAGLTRAE*GKQRAT Trigger: AGTGGCTCGTTGCTTCCCTCACTCTGCCCTTGTTAA...GCCTGCCCCTGTGTGTATCTGTTCTCTCACCTCCCTAGCACTGTAAGCAGCGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR GCA 90 bp | GAGAGAACAGATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACACTGTAACACTTCAGTaGCCAGGGCCAGGGCACACT | + |
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Preference number: 2 (lower is better) Translates to: ERTDTHRGRLHSISAWIHTVTLQ*PGPGHT Trigger: AGTGTGCCCTGGCCCTGGGCACTGAAGTGTTACAGT...GTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATCTGTTCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR GCA 90 bp | ACCGCTGCTTACAGTGCTAGGGAGGTGAGAGAACAGATACACACAGGGGCAGGCGCTCCCTCAAACTGTTaGATTTCCTATGAGCGAGGA | + |
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Preference number: 2 (lower is better) Translates to: TAAYSAREVREQIHTGAGAPSNC*ISYERG Trigger: TCCTCGCTCATAGGAAATGCAACAGTTTGAGGGAGC...GCCTGCCCCTGTGTGTATCTGTTCTCTCACCTCCCTAGCACTGTAAGCAGCGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR GCA 90 bp | ACCGCTGCTTACAGTGCTAGGGAGGTGAGAGAACAGATACACACAGGGGCAGGCTCTCAGCTGCAGCCCTaGATTTTTCTGAGAAATGTC | + |
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Preference number: 2 (lower is better) Translates to: TAAYSAREVREQIHTGAGSQLQP*IFLRNV Trigger: GACATTTCTCAGAAAAATGCAGGGCTGCAGCTGAGA...GCCTGCCCCTGTGTGTATCTGTTCTCTCACCTCCCTAGCACTGTAAGCAGCGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR GCA 90 bp | GAGAGAACAGATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACCTTCTGAAAGCTTGCTaGTCAAAGGCCATTATGGAC | + |
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Preference number: 2 (lower is better) Translates to: ERTDTHRGRLHSISAWIHLLKAC*SKAIMD Trigger: GTCCATAATGGCCTTTGAGCAGCAAGCTTTCAGAAG...GTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATCTGTTCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR TCA 90 bp | GAGAGAACAGATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACAGGAAGTTGTCAAAATaGAAGGAAGTCACACTGACG | + |
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Preference number: 2 (lower is better) Translates to: ERTDTHRGRLHSISAWIHRKLSK*KEVTLT Trigger: CGTCAGTGTGACTTCCTTTCATTTTGACAACTTCCT...GTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATCTGTTCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCCCCCTACTGAGAGGGCACGTGATCACAGTAAGCTTAAAGAGTTGCAAAGCAGTGCAAAGGGAATaGGAGGTCAGTCAAAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: KSPLLRGHVITVSLKSCKAVQRE*EVSQSL Trigger: CAGGCTTTGACTGACCTCTCATTCCCTTTGCACTGC...TTTGCAACTCTTTAAGCTTACTGTGATCACGTGCCCTCTCAGTAGGGGGCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR GCA 90 bp | GATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACAAACTATGTGGAACAAAGGGGCAATaGTCCCTCAAACTGTTGCAT | + |
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Preference number: 2 (lower is better) Translates to: DTHRGRLHSISAWIHKLCGTKGQ*SLKLLH Trigger: ATGCAACAGTTTGAGGGAGCATTGCCCCTTTGTTCC...ACATAGTTTGTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR CCA 90 bp | AACCTGAAGCAGTGCAAAGGGAATGAGAGGTCAGTCAAAGCCTGCCAGTCCTCAGGAATGAATTTTAAGTaGTCTCCTCAGCAGAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: NLKQCKGNERSVKACQSSGMNFK*SPQQKW Trigger: CCACTTCTGCTGAGGAGACCACTTAAAATTCATTCC...TGAGGACTGGCAGGCTTTGACTGACCTCTCATTCCCTTTGCACTGCTTCAGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR TCA 90 bp | GATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACAAACTATGTGTGGAAACTCAGGAATaGATTTTAAGTGGTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: DTHRGRLHSISAWIHKLCVETQE*ILSGLL Trigger: GAGGAGACCACTTAAAATTCATTCCTGAGTTTCCAC...ACATAGTTTGTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR CCA 90 bp | AAGGAAGTTGTCAAAATGAAAGGAAGTCACACTGACGGGGAATGTACCCAGCTAAGCCCGCACAGAGCCTaGCCTGTGAGAATTTCTATT | + |
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Preference number: 2 (lower is better) Translates to: KEVVKMKGSHTDGECTQLSPHRA*PVRISI Trigger: AATAGAAATTCTCACAGGCCAGGCTCTGTGCGGGCT...TAGCTGGGTACATTCCCCGTCAGTGTGACTTCCTTTCATTTTGACAACTTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR CCA 90 bp | AAAAGCCCCCTACTGAGAGGGCACGTGATCACAGTAAGCTTAAAGAGTTGCAAAGGATACTTTTATCCCTaGCTGCCCTTACAGGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: KSPLLRGHVITVSLKSCKGYFYP*LPLQES Trigger: ACTTTCCTGTAAGGGCAGCCAGGGATAAAAGTATCC...TTTGCAACTCTTTAAGCTTACTGTGATCACGTGCCCTCTCAGTAGGGGGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR TCA 90 bp | AAGGAAGTTGTCAAAATGAAAGGAAGTCACACTGACGGGGAATGTACCCAGCTAACAGAGCCTGGCCTGTaGGAATTTCTATTAACAAGG | + |
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Preference number: 2 (lower is better) Translates to: KEVVKMKGSHTDGECTQLTEPGL*EFLLTR Trigger: CCTTGTTAATAGAAATTCTCACAGGCCAGGCTCTGT...TAGCTGGGTACATTCCCCGTCAGTGTGACTTCCTTTCATTTTGACAACTTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR-3UTR CCA 90 bp | TGGACTAGAACTAACCTGAAGCAGTGCAAAGGGAATGAGAGGTCAGTCAAAGCCGGTATTCTCCCACAGTaGAAACTCAGGAATGAATTT | + |
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Preference number: 2 (lower is better) Translates to: WTRTNLKQCKGNERSVKAGILPQ*KLRNEF Trigger: AAATTCATTCCTGAGTTTCCACTGTGGGAGAATACC...GGCTTTGACTGACCTCTCATTCCCTTTGCACTGCTTCAGGTTAGTTCTAGTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR TCA 72 bp | CTACAAGAGGCACCGCTGCTTACAGTGCTAGGGAGGTaGGAGAACAGATACACACAGGGGCAGGCTTCACAG | + |
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Preference number: 3 (lower is better) Translates to: LQEAPLLTVLGR*ENRYTQGQASQ Trigger: CTGTGAAGCCTGCCCCTGTGTGTATCTGTTCTCTCACCTCCCTAGCACTGTAAGCAGCGGTGCCTCTTGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR GCA 72 bp | AAGCAGTGCAAAGGGAATGAGAGGTCAGTCAAAGCCTaGCAGTCCTCACAGGAACAAAGGGGCAATGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: KQCKGNERSVKA*QSSQEQRGNAP Trigger: GGGAGCATTGCCCCTTTGTTCCTGTGAGGACTGGCAGGCTTTGACTGACCTCTCATTCCCTTTGCACTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR GCA 72 bp | CAAAGGCCATTATGGACTAGAACTAACCTGAAGCAGTaGAAAGGGAATGAGAGGTCAGTCAAAGCCTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: QRPLWTRTNLKQ*KGNERSVKACQ Trigger: CTGGCAGGCTTTGACTGACCTCTCATTCCCTTTGCACTGCTTCAGGTTAGTTCTAGTCCATAATGGCCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR TCA 72 bp | AAGGAAGGAAGTTGTCAAAATGAAAGGAAGTCACACTaGCGGGGAATGTACCCAGCTACACCTGGCACTAGA | + |
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Preference number: 3 (lower is better) Translates to: KEGSCQNERKSH*RGMYPATPGTR Trigger: TCTAGTGCCAGGTGTAGCTGGGTACATTCCCCGTCAGTGTGACTTCCTTTCATTTTGACAACTTCCTTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR GCA 72 bp | AACAGATACACACAGGGGCAGGCTTCACAGCATCAGTaGATGGATCCACAAACTATGTTACAGCTAGTTCAT | + |
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Preference number: 3 (lower is better) Translates to: NRYTQGQASQHQ*MDPQTMLQLVH Trigger: ATGAACTAGCTGTAACATAGTTTGTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATCTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR GCA 72 bp | GGAAAGTCAAACAGCAGTAAACACTTGTCTCTCAAGTaGAAAGCTGGAGGCACTGAAATACAGCCAATACTA | + |
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Preference number: 3 (lower is better) Translates to: GKSNSSKHLSLK*KAGGTEIQPIL Trigger: TAGTATTGGCTGTATTTCAGTGCCTCCAGCTTTGCACTTGAGAGACAAGTGTTTACTGCTGTTTGACTTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR CCA 72 bp | AAACATAACAAAGCAGGAAACACCAGACAGCACAGATaGATCGAGATAATAGATAATCCATCATCTCGTGTA | + |
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Preference number: 3 (lower is better) Translates to: KHNKAGNTRQHR*IEIIDNPSSRV Trigger: TACACGAGATGATGGATTATCTATTATCTCGATCCATCTGTGCTGTCTGGTGTTTCCTGCTTTGTTATGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204005.3 |
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| 3UTR TCA 72 bp | ACAAAGAAACTGCTACAATCCTCAAATATAATCTTCTaGAAGCTTGCTGCTCAAAGGCCATTATGGACTAGA | + |
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Preference number: 3 (lower is better) Translates to: TKKLLQSSNIIF*KLAAQRPLWTR Trigger: TCTAGTCCATAATGGCCTTTGAGCAGCAAGCTTTCAGAAGATTATATTTGAGGATTGTAGCAGTTTCTTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR GCA 90 bp | ACCGCTGCTTACAGTGCTAGGGAGGTGAGAGAACAGATACACACAGGGGCAGGCACCTCTCCCCAGCCTTaGAGCTGCTCTTCAAGACTT | + |
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Preference number: 4 (lower is better) Translates to: TAAYSAREVREQIHTGAGTSPQP*SCSSRL Trigger: AAGTCTTGAAGAGCAGCTGCAAGGCTGGGGAGAGGT...GCCTGCCCCTGTGTGTATCTGTTCTCTCACCTCCCTAGCACTGTAAGCAGCGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR GCA 90 bp | AAAAGCCCCCTACTGAGAGGGCACGTGATCACAGTAAGCTTAAAGAGTTGCAAACCACGGCCAGCAGGTTaGTGCTGCGGTTATCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: KSPLLRGHVITVSLKSCKPRPAG*CCGYPP Trigger: AGGGGGATAACCGCAGCAGCAACCTGCTGGCCGTGG...TTTGCAACTCTTTAAGCTTACTGTGATCACGTGCCCTCTCAGTAGGGGGCTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR CCA 90 bp | GAATGTACCCAGCTACACCTGGCACTAGAGCCCGCACAGAGCCTGGCCTGTGAGACCAGACAGCACAGATaGATCGAGATAATAGATAAT | + |
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Preference number: 4 (lower is better) Translates to: ECTQLHLALEPAQSLACETRQHR*IEIIDN Trigger: ATTATCTATTATCTCGATCCATCTGTGCTGTCTGGT...CTCACAGGCCAGGCTCTGTGCGGGCTCTAGTGCCAGGTGTAGCTGGGTACATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| 3UTR CAA 72 bp | GAAATGTCAAGGGGAAAGTCAAACAGCAGTAAACACTaGTCTCTCAAGTGCAAAGCTGGAGGCACTGAAATA | + |
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Preference number: 4 (lower is better) Translates to: EMSRGKSNSSKH*SLKCKAGGTEI Trigger: TATTTCAGTGCCTCCAGCTTTGCACTTGAGAGACAAGTGTTTACTGCTGTTTGACTTTCCCCTTGACATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR CAA 90 bp | TGCCAGTCCTCACAGGAACAAAGGGGCAATGCTCCCTCAAACTGTTGCATTTCCGCTGCTCTTCAAGACTaGCAGTCTCCACGGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CQSSQEQRGNAPSNCCISAALQD*QSPRPA Trigger: TGCTGGCCGTGGAGACTGCAAGTCTTGAAGAGCAGC...GGAAATGCAACAGTTTGAGGGAGCATTGCCCCTTTGTTCCTGTGAGGACTGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR CAA 90 bp | CCTCACAGGAACAAAGGGGCAATGCTCCCTCAAACTGTTGCATTTCCTATGAGCCACCTCTCCCCAGCCTaGCAGCTGCTCTTCAAGACT | + |
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Preference number: 5 (lower is better) Translates to: PHRNKGAMLPQTVAFPMSHLSPA*QLLFKT Trigger: AGTCTTGAAGAGCAGCTGCAAGGCTGGGGAGAGGTG...GCTCATAGGAAATGCAACAGTTTGAGGGAGCATTGCCCCTTTGTTCCTGTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS-3UTR CAA 90 bp | GAGAGAACAGATACACACAGGGGCAGGCTTCACAGCATCAGTGCATGGATCCACTCCCATCGAAGGACTTaGTCAGCCATCAGCATCACC | + |
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Preference number: 5 (lower is better) Translates to: ERTDTHRGRLHSISAWIHSHRRT*SAISIT Trigger: GGTGATGCTGATGGCTGACAAAGTCCTTCGATGGGA...GTGGATCCATGCACTGATGCTGTGAAGCCTGCCCCTGTGTGTATCTGTTCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032888.10 |
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| CDS CCA 90 bp | CAGGCACAAAAACATAACAAAGCAGGAAACACCAGACAGCACAGATaGATCGAGATAATAGATAATCCAGCAGGTTGCTGCTGCGGTTAT | + |
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Preference number: 5 (lower is better) Translates to: QAQKHNKAGNTRQHR*IEIIDNPAGCCCGY Trigger: ATAACCGCAGCAGCAACCTGCTGGATTATCTATTATCTCGATCCATCTGTGCTGTCTGGTGTTTCCTGCTTTGTTATGTTTTTGTGCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203154.3 |
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| CDS TCA 72 bp | GTCCTTTCCGCAGAACCCGTTTTCAGCTTCCTGCGGTaGACTCCAACCAGCCAGCTCCAACAAATTCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: VLSAEPVFSFLR*TPTSQLQQIQQ Trigger: CTGCTGAATTTGTTGGAGCTGGCTGGTTGGAGTTCACCGCAGGAAGCTGAAAACGGGTTCTGCGGAAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204005.3 |
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| CDS GCA 72 bp | CCACTGTCCTTTCCGCAGAACCCGTTTTCAGCTTCCTaGGGTGAACTCCAACCAGCCAGCTCCAACAAATTC | + |
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Preference number: 6 (lower is better) Translates to: PLSFPQNPFSAS*GELQPASSNKF Trigger: GAATTTGTTGGAGCTGGCTGGTTGGAGTTCACCGCAGGAAGCTGAAAACGGGTTCTGCGGAAAGGACAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204005.3 |
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| CDS CCA 72 bp | AAACATAACAAAGCAGGAAACACCAGACAGCACAGATaGATCGAGATAATAGATAATCCAGCAGGTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: KHNKAGNTRQHR*IEIIDNPAGCC Trigger: GCAGCAACCTGCTGGATTATCTATTATCTCGATCCATCTGTGCTGTCTGGTGTTTCCTGCTTTGTTATGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203154.3 |
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