Pregenerated sensors for ARL5C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038352Ensembl transcript IDs: ENSMUST00000042971.16, ENSMUST00000107563.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCGGTTGGTGGTGGAGGGGCTTAGAACCCTGCAGTGTAAGGGACTaGGACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: SGWWWRGLEPCSVRD*DSLECSVLSFINSL Trigger: CAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR GCA 90 bp | AATTGCCTCTCAGCGGAAGTGACCTCCATTCAGTCATGTCCCAGGTaGCAGAAGGCTCAGAGAATATGTCAGGTGACTAACAGGCTAACG | + |
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Preference number: 1 (lower is better) Translates to: NCLSAEVTSIQSCPR*QKAQRICQVTNRLT Trigger: CGTTAGCCTGTTAGTCACCTGACATATTCTCTGAGCCTTCTGGCACCTGGGACATGACTGAATGGAGGTCACTTCCGCTGAGAGGCAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR GCA 90 bp | ACAAAAGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACGTGAT | + |
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Preference number: 1 (lower is better) Translates to: TKEGWRDGSVVKSTD*SSRGPEFNSQQPRD Trigger: ATCACGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCTTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR TCA 90 bp | TGTAGTAATCTTTTTGTCCATAGCCACCCTCTTTCCACCAACAAATaGCTGGTGTTTCTCACTGGTGCTAGTCATTTGGTTTCTGGTTGG | + |
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Preference number: 1 (lower is better) Translates to: CSNLFVHSHPLSTNK*LVFLTGASHLVSGW Trigger: CCAACCAGAAACCAAATGACTAGCACCAGTGAGAAACACCAGTCATTTGTTGGTGGAAAGAGGGTGGCTATGGACAAAAAGATTACTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR TCA 90 bp | GAAAGCGAGCGGTTGGTGGTGGAGGGGCTTAGAACCCTGCAGTGTAAGGGACTGTCTTCACACCAGCAGTaGTGGAGTGGGTGGACAGCT | + |
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Preference number: 2 (lower is better) Translates to: ESERLVVEGLRTLQCKGLSSHQQ*WSGWTA Trigger: AGCTGTCCACCCACTCCATCACTGCTGGTGTGAAGA...CAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | CACCTAAGAGGGAACAGTGAGCAGGAAAGCGAGCGGTTGGTGGTGGAGGGGCTTATGTCAAAGATCTCTTaGTTGCCGAGAAGACAGAAC | + |
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Preference number: 2 (lower is better) Translates to: HLRGNSEQESERLVVEGLMSKIS*LPRRQN Trigger: GTTCTGTCTTCTCGGCAAGCAAGAGATCTTTGACAT...AAGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CCA 90 bp | AGATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAAAGCGAGCGGTTGGTaGTGGAGGGGCTTAGAACCC | + |
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Preference number: 2 (lower is better) Translates to: RSLTFQRSGIHTRGMLREKASGW*WRGLEP Trigger: GGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTT...CTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CAA 90 bp | ATGGAGTGGGTGGACAGCTTCATCTGTAGTCCTGTCTGCACCAACTaGAAGTCTTTGATCCAGCTCTCAGTGACAGCTGAGAGGACTGTA | + |
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Preference number: 2 (lower is better) Translates to: MEWVDSFICSPVCTN*KSLIQLSVTAERTV Trigger: TACAGTCCTCTCAGCTGTCACTGAGAGCTGGATCAAAGACTTCAAGTTGGTGCAGACAGGACTACAGATGAAGCTGTCCACCCACTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | AGATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAGGGGCTTAGAACCCTaGAGTGTAAGGGACTGCGAC | + |
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Preference number: 2 (lower is better) Translates to: RSLTFQRSGIHTRGMLRERGLEP*SVRDCD Trigger: GTCGCAGTCCCTTACACTGCAGGGTTCTAAGCCCCT...CTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR TCA 90 bp | ACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTCCCACCCCCACTTTCCACCAACAAATaGCTGGTGTTTCTCACTGGT | + |
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Preference number: 2 (lower is better) Translates to: TVWNVLSSHSSTLCLPPPLSTNK*LVFLTG Trigger: ACCAGTGAGAAACACCAGTCATTTGTTGGTGGAAAG...TGGGGGTGGGAGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | AGGGACTGCGACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTTTGACCGGGTCCTATTaGCTCCTTTATCGGAATCTC | + |
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Preference number: 2 (lower is better) Translates to: RDCDSLECSVLSFINSLPLTGSY*LLYRNL Trigger: GAGATTCCGATAAAGGAGGCAATAGGACCCGGTCAA...AGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CCA 90 bp | TTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAAGGAGCTGGTGCTAGTCATTTaGTTTCTGGTTGGCCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: LTFQRSGIHTRGMLREKELVLVI*FLVGLG Trigger: CCCGAGGCCAACCAGAAACCAAATGACTAGCACCAG...CTCCTTCTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CCA 90 bp | ACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTCCCACCCCCACCACCAACAAATGACTaGTGTTTCTCACTGGTGCTA | + |
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Preference number: 2 (lower is better) Translates to: TVWNVLSSHSSTLCLPPPPPTND*CFSLVL Trigger: TAGCACCAGTGAGAAACACCAGTCATTTGTTGGTGG...TGGGGGTGGGAGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | GGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCAGCCTTTATTATAATTaGCTCTCAGCGGAAGTGACC | + |
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Preference number: 2 (lower is better) Translates to: GSVVKSTDCSSRGPEFNSSLYYN*LSAEVT Trigger: GGTCACTTCCGCTGAGAGGCAATTATAATAAAGGCT...GGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR-3UTR CCA 90 bp | TTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAAGGAGGGGACTGCGACAGTCTaGAATGTTCTGTCCTCTCAT | + |
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Preference number: 2 (lower is better) Translates to: LTFQRSGIHTRGMLREKEGTATV*NVLSSH Trigger: ATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCC...CTCCTTCTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | ATTGTTCTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTCAGTCATGTCCCAGGTaGCAGAAGGCTCAGAGAATA | + |
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Preference number: 2 (lower is better) Translates to: IVLFRHTRRGHQIPLQMVQSCPR*QKAQRI Trigger: TATTCTCTGAGCCTTCTGGCACCTGGGACATGACTG...AACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAACAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR CAA 90 bp | TTGATCCAGCTCTCAGTGACAGCTGAGAGGACTGTAGTAATCTTTTaGTCCATAGCCACCCTCTTTCCACCAACAAATGACTGGTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LIQLSVTAERTVVIF*SIATLFPPTNDWCF Trigger: GAAACACCAGTCATTTGTTGGTGGAAAGAGGGTGGCTATGGACAAAAAGATTACTACAGTCCTCTCAGCTGTCACTGAGAGCTGGATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR GCA 90 bp | CTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAAGGAATCTGTAGTCCTGTCTaGACCAACTTGAAGTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: LDISEEWDSYQRDAKREGICSPV*TNLKSL Trigger: CAAAGACTTCAAGTTGGTGCAGACAGGACTACAGAT...TCCTTCTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR TCA 90 bp | ATATTAATACACCATTGTTCTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATCTATAATGGGTTGTaGTGCCCTCTTCTGGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: ILIHHCSLQTHQKRASDPIYNGL*CPLLVC Trigger: ACACACCAGAAGAGGGCATCACAACCCATTATAGAT...GGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAACAATGGTGTATTAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR-3UTR CAA 90 bp | CACCTAAGAGGGAACAGTGAGCAGGAAAGCGAGCGGTTGGTGGTGGAGGGGCTTACTGGTGCTAGTCATTaGGTTTCTGGTTGGCCTCGG | + |
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Preference number: 3 (lower is better) Translates to: HLRGNSEQESERLVVEGLTGASH*VSGWPR Trigger: CCGAGGCCAACCAGAAACCAAATGACTAGCACCAGT...AAGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR TCA 72 bp | TGTCAAAGATCTCTTGCTTGCCGAGAAGACAGAACGTaGGGACTGGGAGACCTGGTGCCCCCAACACTCCGC | + |
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Preference number: 3 (lower is better) Translates to: CQRSLACREDRT*GLGDLVPPTLR Trigger: GCGGAGTGTTGGGGGCACCAGGTCTCCCAGTCCTCACGTTCTGTCTTCTCGGCAAGCAAGAGATCTTTGACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR TCA 72 bp | ACTGTGGTCCTGAAGTTAGCACCTAAGAGGGAACAGTaGGCAGGAAAGCGAGCGGTTGGTGGTGGAGGGGCT | + |
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Preference number: 3 (lower is better) Translates to: TVVLKLAPKREQ*AGKRAVGGGGA Trigger: AGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTGCTAACTTCAGGACCACAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CAA 90 bp | GAAAGCGAGCGGTTGGTGGTGGAGGGGCTTAGAACCCTGCAGTGTAAGGGACTGCCTGTCTGCACCAACTaGAAGTCTTTGATCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: ESERLVVEGLRTLQCKGLPVCTN*KSLIQL Trigger: GAGCTGGATCAAAGACTTCAAGTTGGTGCAGACAGG...CAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR GCA 72 bp | AAAGCGAGCGGTTGGTGGTGGAGGGGCTTAGAACCCTaGAGTGTAAGGGACTGCGACAGTCTGGAATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: KASGWWWRGLEP*SVRDCDSLECS Trigger: AGAACATTCCAGACTGTCGCAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR GCA 72 bp | TGGTGGAGGGGCTTAGAACCCTGCAGTGTAAGGGACTaGGACAGTCTGGAATGTTCTGTCCTCTCATTCATC | + |
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Preference number: 3 (lower is better) Translates to: WWRGLEPCSVRD*DSLECSVLSFI Trigger: GATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CAA 90 bp | TGCCCCCAACACTCCGCAGTAAGTTCCCTAGTGTCTCTCTTCACACCAGCAGTGACCAACTTGAAGTCTTaGATCCAGCTCTCAGTGACA | + |
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Preference number: 3 (lower is better) Translates to: CPQHSAVSSLVSLFTPAVTNLKS*IQLSVT Trigger: TGTCACTGAGAGCTGGATCAAAGACTTCAAGTTGGT...CACTGCTGGTGTGAAGAGAGACACTAGGGAACTTACTGCGGAGTGTTGGGGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR GCA 72 bp | TCAGCGGAAGTGACCTCCATTCAGTCATGTCCCAGGTaGCAGAAGGCTCAGAGAATATGTCAGGTGACTAAC | + |
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Preference number: 3 (lower is better) Translates to: SAEVTSIQSCPR*QKAQRICQVTN Trigger: GTTAGTCACCTGACATATTCTCTGAGCCTTCTGGCACCTGGGACATGACTGAATGGAGGTCACTTCCGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| 3UTR GCA 72 bp | ATGGAGTGGGTGGACAGCTTCATCTGTAGTCCTGTCTaGACCAACTTGAAGTCTTTGATCCAGCTCTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: MEWVDSFICSPV*TNLKSLIQLSV Trigger: CACTGAGAGCTGGATCAAAGACTTCAAGTTGGTGCAGACAGGACTACAGATGAAGCTGTCCACCCACTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR-3UTR CAA 90 bp | CCCCCAACACTCCGCAGTAAGTTCCCTAGTGTCTCTCTTCACACCAGCAGTGATACTGTAGTAATCTTTTaGTCCATAGCCACCCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: PPTLRSKFPSVSLHTSSDTVVIF*SIATLF Trigger: AAAGAGGGTGGCTATGGACAAAAAGATTACTACAGT...ATCACTGCTGGTGTGAAGAGAGACACTAGGGAACTTACTGCGGAGTGTTGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CCA 72 bp | TTGTCCATAGCCACCCTCTTTCCACCAACAAATGACTaGTGTTTCTCACTGGTGCTAGTCATTTGGTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: LSIATLFPPTND*CFSLVLVIWFL Trigger: CAGAAACCAAATGACTAGCACCAGTGAGAAACACCAGTCATTTGTTGGTGGAAAGAGGGTGGCTATGGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR TCA 72 bp | CTTTTTGTCCATAGCCACCCTCTTTCCACCAACAAATaGCTGGTGTTTCTCACTGGTGCTAGTCATTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LFVHSHPLSTNK*LVFLTGASHLV Trigger: AACCAAATGACTAGCACCAGTGAGAAACACCAGTCATTTGTTGGTGGAAAGAGGGTGGCTATGGACAAAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR TCA 72 bp | CCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTaGGCCAACCCAAGACTTTTAAATCCTAAAAACAAA | + |
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Preference number: 3 (lower is better) Translates to: PEEGIRSHYRWL*ANPRLLNPKNK Trigger: TTTGTTTTTAGGATTTAAAAGTCTTGGGTTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| CDS-3UTR CCA 90 bp | GAAAGCGAGCGGTTGGTGGTGGAGGGGCTTAGAACCCTGCAGTGTAAGGGACTGCCACTGGAGCCCAGCTaGCAGCCCTTCTCCTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: ESERLVVEGLRTLQCKGLPLEPS*QPFSCE Trigger: CTCACAGGAGAAGGGCTGCCAGCTGGGCTCCAGTGG...CAGTCCCTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR GCA 90 bp | CACCTAAGAGGGAACAGTGAGCAGGAAAGCGAGCGGTTGGTGGTGGAGGGGCTTCAGCAGCCCTGGATATaGCACGGGTGGTCTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: HLRGNSEQESERLVVEGLQQPWI*HGWSLM Trigger: CATCAAAGACCACCCGTGGCATATCCAGGGCTGCTG...AAGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR TCA 90 bp | ACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTCCCACCCCCAGCAGCCCTTCTCCTGTaGGAGCACAGCAGCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: TVWNVLSSHSSTLCLPPPAALLL*EHSSPG Trigger: TCCAGGGCTGCTGTGCTCTCACAGGAGAAGGGCTGC...TGGGGGTGGGAGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CAA 72 bp | CACCTAAGAGGGAACAGTGAGCAGGAAAGCGAGCGGTaGGTGGTGGAGGGGCTTAGAACCCTGCAGTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: HLRGNSEQESER*VVEGLRTLQCK Trigger: CTTACACTGCAGGGTTCTAAGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR TCA 90 bp | TGCCCCCAACACTCCGCAGTAAGTTCCCTAGTGTCTCTCTTCACACCAGCAGTGATGACTTTGTGCTCCTaGCTCCCAAAGATTCGCATC | + |
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Preference number: 4 (lower is better) Translates to: CPQHSAVSSLVSLFTPAVMTLCS*LPKIRI Trigger: GATGCGAATCTTTGGGAGTCAGGAGCACAAAGTCAT...CACTGCTGGTGTGAAGAGAGACACTAGGGAACTTACTGCGGAGTGTTGGGGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR TCA 90 bp | ATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAACAGTTGGCGGTGGCCTaGGCTTGCATCCACTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ILDISEEWDSYQRDAKREQLAVA*ACIHWS Trigger: GCTCCAGTGGATGCAAGCTCAGGCCACCGCCAACTG...TTCTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | CACCTAAGAGGGAACAGTGAGCAGGAAAGCGAGCGGTTGGTGGTGGAGGGGCTTTCACATCCTGCTTGTTaGCAAAGATCAGTACTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HLRGNSEQESERLVVEGLSHPAC*QRSVLK Trigger: CTTCAGTACTGATCTTTGCCAACAAGCAGGATGTGA...AAGCCCCTCCACCACCAACCGCTCGCTTTCCTGCTCACTGTTCCCTCTTAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTCCCACCCCCATGGATATGCCACGGGTaGTCTTTGATGGCACTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TVWNVLSSHSSTLCLPPPWICHG*SLMALS Trigger: ACTCAGTGCCATCAAAGACCACCCGTGGCATATCCA...TGGGGGTGGGAGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | CCCTGCAGTGTAAGGGACTGCGACAGTCTGGAATGTTCTGTCCTCTCATTCATCGGGAGATCTCTGCTGTaGTCATGGAGTCTTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: PCSVRDCDSLECSVLSFIGRSLL*SWSLSH Trigger: ATGTGAAAGACTCCATGACCACAGCAGAGATCTCCC...GATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCCTTACACTGCAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CAA 72 bp | GTGGACAGCTTCATCTGTAGTCCTGTCTGCACCAACTaGAAGTCTTTGATCCAGCTCTCAGTGACAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: VDSFICSPVCTN*KSLIQLSVTAE Trigger: CTCAGCTGTCACTGAGAGCTGGATCAAAGACTTCAAGTTGGTGCAGACAGGACTACAGATGAAGCTGTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR TCA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCAATGACTTTGTGCTCCTaGCTCCCAAAGATTCGCATC | + |
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Preference number: 4 (lower is better) Translates to: VKSTDCSSRGPEFNSQQPMTLCS*LPKIRI Trigger: GATGCGAATCTTTGGGAGTCAGGAGCACAAAGTCAT...TGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| CDS-3UTR TCA 90 bp | ACTGCGACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTCCCATCCCACATGAGGAAGTaGGTCTTCCGAAGAACAATT | + |
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Preference number: 4 (lower is better) Translates to: TATVWNVLSSHSSTLCLPSHMRK*VFRRTI Trigger: AATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGA...TGGGAGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR TCA 90 bp | TCCATTCAGTCATGTCCCAGGTGCCAGAAGGCTCAGAGAATATGTCAGGTGACTTCCCACATGAGGAAGTaGGTCTTCCGAAGAACAATT | + |
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Preference number: 4 (lower is better) Translates to: SIQSCPRCQKAQRICQVTSHMRK*VFRRTI Trigger: AATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGA...AGTCACCTGACATATTCTCTGAGCCTTCTGGCACCTGGGACATGACTGAATGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| CDS-3UTR TCA 90 bp | AGATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAGTACTGAAGCATTTTaGAGTGCCTCATGGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RSLTFQRSGIHTRGMLRESTEAF*SASWAS Trigger: GCTGGCCCATGAGGCACTTCAAAATGCTTCAGTACT...CTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | TGTCCCAGGTGCCAGAAGGCTCAGAGAATATGTCAGGTGACTAACAGGCTAACGTGTGAACAACCTCATTaGTCAGGAACTGGTAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: CPRCQKAQRICQVTNRLTCEQPH*SGTGRE Trigger: TTCTCTACCAGTTCCTGACCAATGAGGTTGTTCACA...CGTTAGCCTGTTAGTCACCTGACATATTCTCTGAGCCTTCTGGCACCTGGGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107563.2 |
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| CDS-3UTR CCA 90 bp | AGGGACTGCGACAGTCTGGAATGTTCTGTCCTCTCATTCATCAACTCTCTGCCTTGTGAACAACCTCATTaGTCAGGAACTGGTAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: RDCDSLECSVLSFINSLPCEQPH*SGTGRE Trigger: TTCTCTACCAGTTCCTGACCAATGAGGTTGTTCACA...AGGCAGAGAGTTGATGAATGAGAGGACAGAACATTCCAGACTGTCGCAGTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | AGATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGTCTCTGCTGTGGTCATaGAGTCTTTCACATCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RSLTFQRSGIHTRGMLRESLLWS*SLSHPA Trigger: AGCAGGATGTGAAAGACTCCATGACCACAGCAGAGA...CTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CCA 90 bp | CCAACAAATGACTGGTGTTTCTCACTGGTGCTAGTCATTTGGTTTCTGGTTGGCCTGAGTGTGAGAAATTaGGAGATCTCTGCTGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: PTNDWCFSLVLVIWFLVGLSVRN*EISAVV Trigger: GACCACAGCAGAGATCTCCCAATTTCTCACACTCAG...GCCAACCAGAAACCAAATGACTAGCACCAGTGAGAAACACCAGTCATTTGTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CAA 72 bp | TTCATCTGTAGTCCTGTCTGCACCAACTTGAAGTCTTaGATCCAGCTCTCAGTGACAGCTGAGAGGACTGTA | + |
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Preference number: 4 (lower is better) Translates to: FICSPVCTNLKS*IQLSVTAERTV Trigger: TACAGTCCTCTCAGCTGTCACTGAGAGCTGGATCAAAGACTTCAAGTTGGTGCAGACAGGACTACAGATGAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| 3UTR CAA 72 bp | CTCTCAGTGACAGCTGAGAGGACTGTAGTAATCTTTTaGTCCATAGCCACCCTCTTTCCACCAACAAATGAC | + |
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Preference number: 4 (lower is better) Translates to: LSVTAERTVVIF*SIATLFPPTND Trigger: GTCATTTGTTGGTGGAAAGAGGGTGGCTATGGACAAAAAGATTACTACAGTCCTCTCAGCTGTCACTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR GCA 90 bp | ATCCTTGACATTTCAGAGGAGTGGGATTCATACCAGAGGGATGCTAAGAGAGAAGAGTCTTTCACATCCTaGTTGTTGGCAAAGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: ILDISEEWDSYQRDAKREESFTS*LLAKIS Trigger: ACTGATCTTTGCCAACAAGCAGGATGTGAAAGACTC...TTCTCTCTTAGCATCCCTCTGGTATGAATCCCACTCCTCTGAAATGTCAAGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS TCA 90 bp | TGTCCCAGGTGGAGCGCAGCGCCTCCTGGCCCCCTAGGTCCCACATaGGGAAGTGAGTCTTCCGAAGAACAATTTCTTCCACGTTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: CPRWSAAPPGPLGPT*GSESSEEQFLPRCS Trigger: GGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAGGAGGCGCTGCGCTCCACCTGGGACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042971.16 ENSMUST00000107563.2 |
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| CDS-3UTR CAA 90 bp | GTGTCTCTCTTCACACCAGCAGTGATGGAGTGGGTGGACAGCTTCATCTGTAGTGGCGGTGGCCTGAGCTaGCATCCACTGGAGCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: VSLFTPAVMEWVDSFICSGGGLS*HPLEPS Trigger: GCTGGGCTCCAGTGGATGCAAGCTCAGGCCACCGCC...ACTACAGATGAAGCTGTCCACCCACTCCATCACTGCTGGTGTGAAGAGAGACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS TCA 90 bp | GTGGAGCGCAGCGCCTCCTGGCCCCCTAGGTCCCACATGAGGAAGTaGGTCTTCCGAAGAACAATTTCTTCCACGTTGCTCCCAATGGTG | + |
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Preference number: 5 (lower is better) Translates to: VERSASWPPRSHMRK*VFRRTISSTLLPMV Trigger: CACCATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAGGAGGCGCTGCGCTCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042971.16 ENSMUST00000107563.2 |
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| CDS-3UTR CAA 90 bp | ATCCAGCTCTCAGTGACAGCTGAGAGGACTGTAGTAATCTTTTTGTCCATAGCCTGCCACGGGTGGTCTTaGATGGCACTGAGTGTGAGA | + |
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Preference number: 5 (lower is better) Translates to: IQLSVTAERTVVIFLSIACHGWS*MALSVR Trigger: TCTCACACTCAGTGCCATCAAAGACCACCCGTGGCA...GGCTATGGACAAAAAGATTACTACAGTCCTCTCAGCTGTCACTGAGAGCTGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS GCA 90 bp | CGGGTGGTCTTTGATGGCACTGAGTGTGAGAAATTGGGAGATCTCTaGTGTGGTCATGGAGTCTTTCACATCCTGCTTGTTGGCAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: RVVFDGTECEKLGDL*CGHGVFHILLVGKD Trigger: ATCTTTGCCAACAAGCAGGATGTGAAAGACTCCATGACCACAGCAGAGATCTCCCAATTTCTCACACTCAGTGCCATCAAAGACCACCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS CCA 90 bp | AGTGAGTCTTCCGAAGAACAATTTCTTCCACGTTGCTCCCAATGGTaGAGCAGGTGTGAACAACCTCATTGGTCAGGAACTGGTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: SESSEEQFLPRCSQW*SRCEQPHWSGTGRE Trigger: TTCTCTACCAGTTCCTGACCAATGAGGTTGTTCACACCTGCTCCACCATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGAAGACTCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042971.16 ENSMUST00000107563.2 |
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| CDS TCA 90 bp | GGTCATGGAGTCTTTCACATCCTGCTTGTTGGCAAAGATCAGTACTaGAGCATTTTGAAGTGCCTCATGGGCCAGCATCTTATACAGCTC | + |
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Preference number: 5 (lower is better) Translates to: GHGVFHILLVGKDQY*SILKCLMGQHLIQL Trigger: GAGCTGTATAAGATGCTGGCCCATGAGGCACTTCAAAATGCTTCAGTACTGATCTTTGCCAACAAGCAGGATGTGAAAGACTCCATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS-3UTR CAA 90 bp | ATCCAGCTCTCAGTGACAGCTGAGAGGACTGTAGTAATCTTTTTGTCCATAGCCTCTTTCACATCCTGCTaGTTGGCAAAGATCAGTACT | + |
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Preference number: 5 (lower is better) Translates to: IQLSVTAERTVVIFLSIASFTSC*LAKIST Trigger: AGTACTGATCTTTGCCAACAAGCAGGATGTGAAAGA...GGCTATGGACAAAAAGATTACTACAGTCCTCTCAGCTGTCACTGAGAGCTGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS CCA 72 bp | GGCGGTGGCCTGAGCTTGCATCCACTGGAGCCCAGCTaGCAGCCCTTCTCCTGTGAGAGCACAGCAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: GGGLSLHPLEPS*QPFSCESTAAL Trigger: CAGGGCTGCTGTGCTCTCACAGGAGAAGGGCTGCCAGCTGGGCTCCAGTGGATGCAAGCTCAGGCCACCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS TCA 72 bp | TGGAGCGCAGCGCCTCCTGGCCCCCTAGGTCCCACATaGGGAAGTGAGTCTTCCGAAGAACAATTTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: WSAAPPGPLGPT*GSESSEEQFLP Trigger: TGGAAGAAATTGTTCTTCGGAAGACTCACTTCCTCATGTGGGACCTAGGGGGCCAGGAGGCGCTGCGCTCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042971.16 ENSMUST00000107563.2 |
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| CDS TCA 72 bp | CATGGGCCAGCATCTTATACAGCTCCTCCCGGGTGGTaGGCAGCCGATTCCGGTCTGTGCTATCTATCACAA | + |
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Preference number: 6 (lower is better) Translates to: HGPASYTAPPGW*AADSGLCYLSQ Trigger: TTGTGATAGATAGCACAGACCGGAATCGGCTGCTCACCACCCGGGAGGAGCTGTATAAGATGCTGGCCCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS CCA 72 bp | TCCGAAGAACAATTTCTTCCACGTTGCTCCCAATGGTaGAGCAGGTGTGAACAACCTCATTGGTCAGGAACT | + |
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Preference number: 6 (lower is better) Translates to: SEEQFLPRCSQW*SRCEQPHWSGT Trigger: AGTTCCTGACCAATGAGGTTGTTCACACCTGCTCCACCATTGGGAGCAACGTGGAAGAAATTGTTCTTCGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042971.16 ENSMUST00000107563.2 |
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| CDS GCA 72 bp | TTTGATGGCACTGAGTGTGAGAAATTGGGAGATCTCTaGTGTGGTCATGGAGTCTTTCACATCCTGCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: FDGTECEKLGDL*CGHGVFHILLV Trigger: AACAAGCAGGATGTGAAAGACTCCATGACCACAGCAGAGATCTCCCAATTTCTCACACTCAGTGCCATCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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| CDS CCA 72 bp | CTGCTGTGGTCATGGAGTCTTTCACATCCTGCTTGTTaGCAAAGATCAGTACTGAAGCATTTTGAAGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LLWSWSLSHPAC*QRSVLKHFEVP Trigger: AGGCACTTCAAAATGCTTCAGTACTGATCTTTGCCAACAAGCAGGATGTGAAAGACTCCATGACCACAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042971.16 |
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