Pregenerated sensors for ARL5A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036093Ensembl transcript IDs: ENSMUST00000036541.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATCCTGCTCTCCTGATAGACGCAGCAGCTCTGAAGATGCAAAGGTaGAGAGCAGTCAAGTCACTGGTGGGTGGGAAGACAGAATTAGAG | + |
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Preference number: 1 (lower is better) Translates to: DPALLIDAAALKMQR*RAVKSLVGGKTELE Trigger: CTCTAATTCTGTCTTCCCACCCACCAGTGACTTGACTGCTCTGCACCTTTGCATCTTCAGAGCTGCTGCGTCTATCAGGAGAGCAGGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 90 bp | AGTTCTCTTGGAGCAGGTGGGAAAGCATTAATGCTGAAGGAACACTaGGAGCCTTACAGCACAGATCTCATACACAAAGCCTCACACAGT | + |
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Preference number: 1 (lower is better) Translates to: SSLGAGGKALMLKEH*EPYSTDLIHKASHS Trigger: ACTGTGTGAGGCTTTGTGTATGAGATCTGTGCTGTAAGGCTCCCAGTGTTCCTTCAGCATTAATGCTTTCCCACCTGCTCCAAGAGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 90 bp | CACTCTTTCCCTTACTCCACTATCATGGTCTTAAAGAGTCACACCTaGTGTGAGGAATGTGGCACAGACTTTGTCAGAAGCAATCTGAAA | + |
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Preference number: 1 (lower is better) Translates to: HSFPYSTIMVLKSHT*CEECGTDFVRSNLK Trigger: TTTCAGATTGCTTCTGACAAAGTCTGTGCCACATTCCTCACAGCAGGTGTGACTCTTTAAGACCATGATAGTGGAGTAAGGGAAAGAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 90 bp | TTTCCCTTACTCCACTATCATGGTCTTAAAGAGTCACACCTGCTGTaGGGAATGTGGCACAGACTTTGTCAGAAGCAATCTGAAACTATG | + |
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Preference number: 1 (lower is better) Translates to: FPLLHYHGLKESHLL*GMWHRLCQKQSETM Trigger: CATAGTTTCAGATTGCTTCTGACAAAGTCTGTGCCACATTCCTCACAGCAGGTGTGACTCTTTAAGACCATGATAGTGGAGTAAGGGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 90 bp | AGGCACTTTTTAAGTACACACTATGAGAAATGTCTACCAAGGGTATaGACAATGAGCAGGCAACACCACAGAGACTCATTCATCCGTCTT | + |
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Preference number: 1 (lower is better) Translates to: RHFLSTHYEKCLPRV*TMSRQHHRDSFIRL Trigger: AAGACGGATGAATGAGTCTCTGTGGTGTTGCCTGCTCATTGTGCATACCCTTGGTAGACATTTCTCATAGTGTGTACTTAAAAAGTGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 90 bp | GAAATCAACACAAATCAATGTCAGGCACTTTTTAAGTACACACTATaGGAAATGTCTACCAAGGGTATGCACAATGAGCAGGCAACACCA | + |
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Preference number: 1 (lower is better) Translates to: EINTNQCQALFKYTL*EMSTKGMHNEQATP Trigger: TGGTGTTGCCTGCTCATTGTGCATACCCTTGGTAGACATTTCTCATAGTGTGTACTTAAAAAGTGCCTGACATTGATTTGTGTTGATTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 90 bp | TTCCTATTACATCTGATTCTACAGAAACACATGATGGTTGATTGCTaGCTTTTTCTTCCTTCCTTTCCTCTGTGGCAATCTTTCGTTATG | + |
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Preference number: 1 (lower is better) Translates to: FLLHLILQKHMMVDC*LFLPSFPLWQSFVM Trigger: CATAACGAAAGATTGCCACAGAGGAAAGGAAGGAAGAAAAAGCCAGCAATCAACCATCATGTGTTTCTGTAGAATCAGATGTAATAGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | GACTACCTACGAGGCACTTCCTCAGGCCAGGGAGCAAGCTCTTCTTCCTTCTGGAAGTATGAGAGCATATaGACAGGCCGCAGCACTGGT | + |
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Preference number: 2 (lower is better) Translates to: DYLRGTSSGQGASSSSFWKYESI*TGRSTG Trigger: ACCAGTGCTGCGGCCTGTTCATATGCTCTCATACTT...CCAGAAGGAAGAAGAGCTTGCTCCCTGGCCTGAGGAAGTGCCTCGTAGGTAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCTGATAGACGCAGCAGCTCTGAAGATGCAAAGGTGCAGAGCAGTCAAGTCAGTACTCGCCAAGCTCTaGCATGTCCTGAGAGGATTC | + |
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Preference number: 2 (lower is better) Translates to: LLIDAAALKMQRCRAVKSVLAKL*HVLRGF Trigger: GAATCCTCTCAGGACATGGCAGAGCTTGGCGAGTAC...TGACTTGACTGCTCTGCACCTTTGCATCTTCAGAGCTGCTGCGTCTATCAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CCA 90 bp | TTGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACTTCCATGACTACCTACGAGAGCTCTTCTTCCTTCTaGCTCGGGCAGGCCATGCTT | + |
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Preference number: 2 (lower is better) Translates to: LPVFKLLHLPVTSMTTYESSSSF*LGQAML Trigger: AAGCATGGCCTGCCCGAGCCAGAAGGAAGAAGAGCT...CTCGTAGGTAGTCATGGAAGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR GCA 90 bp | TCCATGACTACCTACGAGGCACTTCCTCAGGCCAGGGAGCAAGCTCTTCTTCCTCACTGCCTAACCCACTaGCTTCTCTGTATTCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SMTTYEALPQAREQALLPHCLTH*LLCILC Trigger: ACAAAGAATACAGAGAAGGCAGTGGGTTAGGCAGTG...AGGAAGAAGAGCTTGCTCCCTGGCCTGAGGAAGTGCCTCGTAGGTAGTCATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 90 bp | AAGCACCCAAGGCAGCGAGGGCTGGCTCAACTCTGGAAGCTGCTCTaGAACAAGAAATTCCATTGTGTTTGGAGAACAGAAGCGCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: KHPRQRGLAQLWKLL*NKKFHCVWRTEALK Trigger: TTTGAGCGCTTCTGTTCTCCAAACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGCTGCCTTGGGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CCA 90 bp | TTAGGTTTACCACCTGCATTAAAGATGCCAGCCAGCGGTGCTAAAGCACTTTCTAGGGAACATTCAACTTaGGGCAGGGTGGGAGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: LGLPPALKMPASGAKALSREHST*GRVGES Trigger: TGACTCTCCCACCCTGCCCCAAGTTGAATGTTCCCT...AGAAAGTGCTTTAGCACCGCTGGCTGGCATCTTTAATGCAGGTGGTAAACCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR GCA 90 bp | GCGAGGGCTGGCTCAACTCTGGAAGCTGCTCTTGAACAAGAAATTCCATTGTGTGACGCTCTACCCACTTaGGTTATATATTTCCACCTG | + |
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Preference number: 2 (lower is better) Translates to: ARAGSTLEAALEQEIPLCDALPT*VIYFHL Trigger: CAGGTGGAAATATATAACGCAAGTGGGTAGAGCGTC...ACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTACTTTTTAAGCATCCAGAGCGCTACATCTCACTCTTTCCCTTACTCCACATGCTGAAGGAACACTaGGAGCCTTACAGCACAGAT | + |
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Preference number: 2 (lower is better) Translates to: HLLFKHPERYISLFPLLHMLKEH*EPYSTD Trigger: ATCTGTGCTGTAAGGCTCCCAGTGTTCCTTCAGCAT...GTGGAGTAAGGGAAAGAGTGAGATGTAGCGCTCTGGATGCTTAAAAAGTAAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 90 bp | AATACTATACACTCAGACAAAGGAAAGGAACACCTTAGAGACCTCTaGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACTTCCATGACT | + |
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Preference number: 2 (lower is better) Translates to: NTIHSDKGKEHLRDL*PVFKLLHLPVTSMT Trigger: AGTCATGGAAGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAAGAGGTCTCTAAGGTGTTCCTTTCCTTTGTCTGAGTGTATAGTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | TCAAAACAGGACACTTCTATCTATCCACATGTACAGAGGTATAAATCTTTGTTCCAGGCTTGGAAGGAATaGGAGCGCAAACGGGTGGTG | + |
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Preference number: 2 (lower is better) Translates to: SKQDTSIYPHVQRYKSLFQAWKE*ERKRVV Trigger: CACCACCCGTTTGCGCTCTCATTCCTTCCAAGCCTG...GAACAAAGATTTATACCTCTGTACATGTGGATAGATAGAAGTGTCCTGTTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACTTCCATGACTACCTACTTTCAGTTTCCTCAATaGTTGTATGTGGACTTCTAT | + |
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Preference number: 2 (lower is better) Translates to: LLPVFKLLHLPVTSMTTYFQFPQ*LYVDFY Trigger: ATAGAAGTCCACATACAAGCATTGAGGAAACTGAAA...GTAGGTAGTCATGGAAGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR GCA 90 bp | TCAAAACAGGACACTTCTATCTATCCACATGTACAGAGGTATAAATCTTTGTTCGGACTGGCTGAGTTCTaGCCTCTGACACGTAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SKQDTSIYPHVQRYKSLFGLAEF*PLTRKL Trigger: CAGCTTACGTGTCAGAGGGCAGAACTCAGCCAGTCC...GAACAAAGATTTATACCTCTGTACATGTGGATAGATAGAAGTGTCCTGTTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | CACTTACTTTTTAAGCATCCAGAGCGCTACATCTCACTCTTTCCCTTACTCCACGACTATCCTAAATCTTaGCAGTTTGGGTTAACCTTC | + |
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Preference number: 2 (lower is better) Translates to: HLLFKHPERYISLFPLLHDYPKS*QFGLTF Trigger: GAAGGTTAACCCAAACTGTCAAGATTTAGGATAGTC...GTGGAGTAAGGGAAAGAGTGAGATGTAGCGCTCTGGATGCTTAAAAAGTAAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGCCTGTAAGAGTGGAACAAAACCATCTCTCTTCTAGGCATCTTAATACTAGCGCAAACGGGTGGTaGCATTTCATCTTTGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: KVPVRVEQNHLSSRHLNTSANGW*HFIFVF Trigger: GAAAACAAAGATGAAATGTCACCACCCGTTTGCGCT...AGTATTAAGATGCCTAGAAGAGAGATGGTTTTGTTCCACTCTTACAGGCACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGCCTGTAAGAGTGGAACAAAACCATCTCTCTTCTAGGCATCTTAATACTCAGGGCACAAAAGGTTaGTATAGTCCACCAGGAATA | + |
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Preference number: 2 (lower is better) Translates to: KVPVRVEQNHLSSRHLNTQGTKG*YSPPGI Trigger: TATTCCTGGTGGACTATATCAACCTTTTGTGCCCTG...AGTATTAAGATGCCTAGAAGAGAGATGGTTTTGTTCCACTCTTACAGGCACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTACTTTTTAAGCATCCAGAGCGCTACATCTCACTCTTTCCCTTACTCCACCTCAATGCTTGTATGTaGACTTCTATTTCTTACCAA | + |
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Preference number: 2 (lower is better) Translates to: HLLFKHPERYISLFPLLHLNACM*TSISYQ Trigger: TTGGTAAGAAATAGAAGTCCACATACAAGCATTGAG...GTGGAGTAAGGGAAAGAGTGAGATGTAGCGCTCTGGATGCTTAAAAAGTAAGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGCCTGTAAGAGTGGAACAAAACCATCTCTCTTCTAGGCATCTTAATACTTTCCACCTGAATTACTaGGCAACAAAAACAGGTATA | + |
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Preference number: 2 (lower is better) Translates to: KVPVRVEQNHLSSRHLNTFHLNY*ATKTGI Trigger: TATACCTGTTTTTGTTGCTCAGTAATTCAGGTGGAA...AGTATTAAGATGCCTAGAAGAGAGATGGTTTTGTTCCACTCTTACAGGCACTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAAACAGGACACTTCTATCTATCCACATGTACAGAGGTATAAATCTTTGTTCTTCTCTTGGAGCAGGTaGGAAAGCATTAATGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: SKQDTSIYPHVQRYKSLFFSWSR*ESINAE Trigger: TTCAGCATTAATGCTTTCCCACCTGCTCCAAGAGAA...GAACAAAGATTTATACCTCTGTACATGTGGATAGATAGAAGTGTCCTGTTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 90 bp | TCAGTTAGATCAGGAGAACAACAAGTTACCATTAACCTGTGTTATTaGCTTTGCTTTAGAGCACAAATCAAAGCCATTAACCTGAACTTG | + |
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Preference number: 2 (lower is better) Translates to: SVRSGEQQVTINLCY*LCFRAQIKAINLNL Trigger: CAAGTTCAGGTTAATGGCTTTGATTTGTGCTCTAAAGCAAAGCAAATAACACAGGTTAATGGTAACTTGTTGTTCTCCTGATCTAACTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR TCA 90 bp | GGAGAACAACAAGTTACCATTAACCTGTGTTATTTGCTTTGCTTTAGAGCACAAGTGCTGATTTGTATTTaGTTCAATGTGAAGGGAACA | + |
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Preference number: 2 (lower is better) Translates to: GEQQVTINLCYLLCFRAQVLICI*FNVKGT Trigger: TGTTCCCTTCACATTGAATCAAATACAAATCAGCAC...TTGTGCTCTAAAGCAAAGCAAATAACACAGGTTAATGGTAACTTGTTGTTCTCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 90 bp | AAACAGGACACTTCTATCTATCCACATGTACAGAGGTATAAATCTTaGTTCTTTTCAAAGCTGAGCACAGTGAAGTTAAATGAGATGCTT | + |
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Preference number: 2 (lower is better) Translates to: KQDTSIYPHVQRYKS*FFSKLSTVKLNEML Trigger: AAGCATCTCATTTAACTTCACTGTGCTCAGCTTTGAAAAGAACAAAGATTTATACCTCTGTACATGTGGATAGATAGAAGTGTCCTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | CACCTGAAACCACAGGACTGGCTGAGTTCTGCCCTCTaGCACGTAAGCTGTCAGCATGATATCAGGGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: HLKPQDWLSSAL*HVSCQHDIRAA Trigger: AGCAGCCCTGATATCATGCTGACAGCTTACGTGTCAGAGGGCAGAACTCAGCCAGTCCTGTGGTTTCAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | CTCCTGATAGACGCAGCAGCTCTGAAGATGCAAAGGTaGAGAGCAGTCAAGTCACTGGTGGGTGGGAAGACA | + |
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Preference number: 3 (lower is better) Translates to: LLIDAAALKMQR*RAVKSLVGGKT Trigger: TGTCTTCCCACCCACCAGTGACTTGACTGCTCTGCACCTTTGCATCTTCAGAGCTGCTGCGTCTATCAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGATAGACGCAGCAGCTCTGAAGATGCAAAGGTGCAGAGCAGTCAAGTCACAGAGCCTGGTGGTCTaGGGGGATAATGGTTATGGG | + |
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Preference number: 3 (lower is better) Translates to: LLIDAAALKMQRCRAVKSQSLVV*GDNGYG Trigger: CCCATAACCATTATCCCCCAAGACCACCAGGCTCTG...TGACTTGACTGCTCTGCACCTTTGCATCTTCAGAGCTGCTGCGTCTATCAGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTTGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACTTCCATGACTACCTACTGTCTTCCTCTCCCTTaGTACTCGCCAAGCTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: LLPVFKLLHLPVTSMTTYCLPLP*YSPSSA Trigger: GGCAGAGCTTGGCGAGTACAAAGGGAGAGGAAGACA...GTAGGTAGTCATGGAAGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | GCGAGGGCTGGCTCAACTCTGGAAGCTGCTCTTGAACAAGAAATTCCATTGTGTAAGGGAACATTCAACTaGGGGCAGGGTGGGAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: ARAGSTLEAALEQEIPLCKGTFN*GQGGRV Trigger: GACTCTCCCACCCTGCCCCAAGTTGAATGTTCCCTT...ACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 72 bp | AGCAAGCACCCAAGGCAGCGAGGGCTGGCTCAACTCTaGAAGCTGCTCTTGAACAAGAAATTCCATTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: SKHPRQRGLAQL*KLLLNKKFHCV Trigger: AACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGCTGCCTTGGGTGCTTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | GGCAGCGAGGGCTGGCTCAACTCTGGAAGCTGCTCTTaGACAAGAAATTCCATTGTGTTTGGAGAACAGAAG | + |
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Preference number: 3 (lower is better) Translates to: GSEGWLNSGSCS*TRNSIVFGEQK Trigger: CTTCTGTTCTCCAAACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 72 bp | GGAGCAGGTGGGAAAGCATTAATGCTGAAGGAACACTaGGAGCCTTACAGCACAGATCTCATACACAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: GAGGKALMLKEH*EPYSTDLIHKA Trigger: GGCTTTGTGTATGAGATCTGTGCTGTAAGGCTCCCAGTGTTCCTTCAGCATTAATGCTTTCCCACCTGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 72 bp | GGTGGGAAGACAGAATTAGAGAGGTCACTCAGAGCCTaGTGGTCTTGGGGGATAATGGTTATGGGAAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: GGKTELERSLRA*WSWGIMVMGKF Trigger: GAACTTTCCCATAACCATTATCCCCCAAGACCACCAGGCTCTGAGTGACCTCTCTAATTCTGTCTTCCCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CCA 72 bp | GGGAAGACAGAATTAGAGAGGTCACTCAGAGCCTGGTaGTCTTGGGGGATAATGGTTATGGGAAAGTTCAGA | + |
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Preference number: 3 (lower is better) Translates to: GKTELERSLRAW*SWGIMVMGKFR Trigger: TCTGAACTTTCCCATAACCATTATCCCCCAAGACCACCAGGCTCTGAGTGACCTCTCTAATTCTGTCTTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | TTAGGTTTACCACCTGCATTAAAGATGCCAGCCAGCGGTGCTAAAGCACTTTCTATACCAGTCACAGGCTaGGAAGGAATGAGAGCGCAA | + |
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Preference number: 3 (lower is better) Translates to: LGLPPALKMPASGAKALSIPVTG*EGMRAQ Trigger: TTGCGCTCTCATTCCTTCCAAGCCTGTGACTGGTAT...AGAAAGTGCTTTAGCACCGCTGGCTGGCATCTTTAATGCAGGTGGTAAACCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | TCCATGACTACCTACGAGGCACTTCCTCAGGCCAGGGAGCAAGCTCTTCTTCCTCAGAGGTATAAATCTTaGTTCTTTTCAAAGCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: SMTTYEALPQAREQALLPQRYKS*FFSKLS Trigger: GCTCAGCTTTGAAAAGAACAAAGATTTATACCTCTG...AGGAAGAAGAGCTTGCTCCCTGGCCTGAGGAAGTGCCTCGTAGGTAGTCATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | CCTTACTCCACTATCATGGTCTTAAAGAGTCACACCTaGTGTGAGGAATGTGGCACAGACTTTGTCAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: PYSTIMVLKSHT*CEECGTDFVRS Trigger: GCTTCTGACAAAGTCTGTGCCACATTCCTCACAGCAGGTGTGACTCTTTAAGACCATGATAGTGGAGTAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGATAGACGCAGCAGCTCTGAAGATGCAAAGGTGCAGAGCAGTCAAGTCATGTGCTGATTTGTATTaGATTCAATGTGAAGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: LLIDAAALKMQRCRAVKSCADLY*IQCEGN Trigger: GTTCCCTTCACATTGAATCAAATACAAATCAGCACA...TGACTTGACTGCTCTGCACCTTTGCATCTTCAGAGCTGCTGCGTCTATCAGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | CTCTGTGGCAATCTTTCGTTATGTAGTCCTGGTGGCTaGTATTATTTAGCTCCGGTTGACTTTGTACTCCCG | + |
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Preference number: 3 (lower is better) Translates to: LCGNLSLCSPGG*YYLAPVDFVLP Trigger: CGGGAGTACAAAGTCAACCGGAGCTAAATAATATCAGCCACCAGGACTACATAACGAAAGATTGCCACAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | CACTTACTTTTTAAGCATCCAGAGCGCTACATCTCACTCTTTCCCTTACTCCACAGACGCTCTACCCACTaGCGTTATATATTTCCACCT | + |
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Preference number: 3 (lower is better) Translates to: HLLFKHPERYISLFPLLHRRSTH*RYIFPP Trigger: AGGTGGAAATATATAACGCAAGTGGGTAGAGCGTCT...GTGGAGTAAGGGAAAGAGTGAGATGTAGCGCTCTGGATGCTTAAAAAGTAAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | ATCCAATTCTTCTACTGGTATCTGGATACCATAATCTaGTCCTGCTCTCCTGATAGACGCAGCAGCTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: IQFFYWYLDTII*SCSPDRRSSSE Trigger: TTCAGAGCTGCTGCGTCTATCAGGAGAGCAGGATCAGATTATGGTATCCAGATACCAGTAGAAGAATTGGAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | ATGTTGTCATCTTTCCCCATGTTAACTAGGCTGGACTaGTATTCTCCAAAGCATTGCCACTCTTGGTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: MLSSFPMLTRLD*YSPKHCHSWFC Trigger: ACAGAACCAAGAGTGGCAATGCTTTGGAGAATAGCAGTCCAGCCTAGTTAACATGGGGAAAGATGACAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | ATGTTAACTAGGCTGGACTGCTATTCTCCAAAGCATTaGCACTCTTGGTTCTGTGAGGATAATGTGAATGCA | + |
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Preference number: 3 (lower is better) Translates to: MLTRLDCYSPKH*HSWFCEDNVNA Trigger: TGCATTCACATTATCCTCACAGAACCAAGAGTGGCAATGCTTTGGAGAATAGCAGTCCAGCCTAGTTAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | TTAAGTACACACTATGAGAAATGTCTACCAAGGGTATaGACAATGAGCAGGCAACACCACAGAGACTCATTC | + |
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Preference number: 3 (lower is better) Translates to: LSTHYEKCLPRV*TMSRQHHRDSF Trigger: GAATGAGTCTCTGTGGTGTTGCCTGCTCATTGTGCATACCCTTGGTAGACATTTCTCATAGTGTGTACTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR-3UTR CAA 90 bp | ACTATACACTCAGACAAAGGAAAGGAACACCTTAGAGACCTCTTGCCTGTCTTCCAGTTTCCTCAATGCTaGTATGTGGACTTCTATTTC | + |
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Preference number: 3 (lower is better) Translates to: TIHSDKGKEHLRDLLPVFQFPQC*YVDFYF Trigger: GAAATAGAAGTCCACATACAAGCATTGAGGAAACTG...GAAGACAGGCAAGAGGTCTCTAAGGTGTTCCTTTCCTTTGTCTGAGTGTATAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | AAACTAGTTAAACCTTTTCTTGACTATCCTAAATCTTaGCAGTTTGGGTTAACCTTCAAGTTTTCAGGGCAC | + |
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Preference number: 3 (lower is better) Translates to: KLVKPFLDYPKS*QFGLTFKFSGH Trigger: GTGCCCTGAAAACTTGAAGGTTAACCCAAACTGTCAAGATTTAGGATAGTCAAGAAAAGGTTTAACTAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR TCA 72 bp | GTAAAGTTTCATGCTGTCTTATGCCATGTCAGTAACTaGCTATATGATGCCAACCTTAACAATGGAGTAAAT | + |
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Preference number: 3 (lower is better) Translates to: VKFHAVLCHVSN*LYDANLNNGVN Trigger: ATTTACTCCATTGTTAAGGTTGGCATCATATAGTCAGTTACTGACATGGCATAAGACAGCATGAAACTTTAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR GCA 72 bp | GAACAACAAGTTACCATTAACCTGTGTTATTTGCTTTaGTTTAGAGCACAAATCAAAGCCATTAACCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: EQQVTINLCYLL*FRAQIKAINLN Trigger: GTTCAGGTTAATGGCTTTGATTTGTGCTCTAAAGCAAAGCAAATAACACAGGTTAATGGTAACTTGTTGTTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| CDS-3UTR TCA 90 bp | GACTACCTACGAGGCACTTCCTCAGGCCAGGGAGCAAGCTCTTCTTCCTTCTGGTCTGATCTTCAGCCGTaGCATCATCCATTCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: DYLRGTSSGQGASSSSFWSDLQP*HHPFKS Trigger: GGACTTGAATGGATGATGTCACGGCTGAAGATCAGA...CCAGAAGGAAGAAGAGCTTGCTCCCTGGCCTGAGGAAGTGCCTCGTAGGTAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| CDS-3UTR CCA 90 bp | TCCATGACTACCTACGAGGCACTTCCTCAGGCCAGGGAGCAAGCTCTTCTTCCTAAAACTGGTAAAGGATaGTCGTCTTCCCAGCATTGT | + |
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Preference number: 4 (lower is better) Translates to: SMTTYEALPQAREQALLPKTGKG*SSSQHC Trigger: ACAATGCTGGGAAGACGACCATCCTTTACCAGTTTT...AGGAAGAAGAGCTTGCTCCCTGGCCTGAGGAAGTGCCTCGTAGGTAGTCATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 72 bp | CACTCAGACAAAGGAAAGGAACACCTTAGAGACCTCTaGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACT | + |
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Preference number: 4 (lower is better) Translates to: HSDKGKEHLRDL*PVFKLLHLPVT Trigger: AGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAAGAGGTCTCTAAGGTGTTCCTTTCCTTTGTCTGAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 72 bp | AGGCAGCGAGGGCTGGCTCAACTCTGGAAGCTGCTCTaGAACAAGAAATTCCATTGTGTTTGGAGAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: RQRGLAQLWKLL*NKKFHCVWRTE Trigger: TTCTGTTCTCCAAACACAATGGAATTTCTTGTTCAAGAGCAGCTTCCAGAGTTGAGCCAGCCCTCGCTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 72 bp | GACAGAATTAGAGAGGTCACTCAGAGCCTGGTGGTCTaGGGGGATAATGGTTATGGGAAAGTTCAGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: DRIREVTQSLVV*GDNGYGKVQSN Trigger: GTTGCTCTGAACTTTCCCATAACCATTATCCCCCAAGACCACCAGGCTCTGAGTGACCTCTCTAATTCTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| 3UTR CAA 72 bp | TCAGGAGAACAACAAGTTACCATTAACCTGTGTTATTaGCTTTGCTTTAGAGCACAAATCAAAGCCATTAAC | + |
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Preference number: 4 (lower is better) Translates to: SGEQQVTINLCY*LCFRAQIKAIN Trigger: GTTAATGGCTTTGATTTGTGCTCTAAAGCAAAGCAAATAACACAGGTTAATGGTAACTTGTTGTTCTCCTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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| CDS-3UTR CAA 90 bp | CTCTTGCCTGTCTTCAAGCTCCTGCACTTACCTGTGACTTCCATGACTACCTACAAGAGCGCAACATGCTaGAATATGCCACTGGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: LLPVFKLLHLPVTSMTTYKSATC*NMPLVV Trigger: GACCACCAGTGGCATATTCAAGCATGTTGCGCTCTT...GTAGGTAGTCATGGAAGTCACAGGTAAGTGCAGGAGCTTGAAGACAGGCAAGAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036541.8 |
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