Pregenerated sensors for ARL4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034936Ensembl transcript IDs: ENSMUST00000039388.3
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCTGCGGCGCACAGGGCCACCTATGCTCCTTCAGTCCTTTGCGGTaGACAGATCCAGCACCCAGGCTGGCTGAGAGGTCACGGGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: PCGAQGHLCSFSPLR*TDPAPRLAERSRAL Trigger: CAGGGCCCGTGACCTCTCAGCCAGCCTGGGTGCTGGATCTGTCCACCGCAAAGGACTGAAGGAGCATAGGTGGCCCTGTGCGCCGCAGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR TCA 90 bp | TTCTTGGCATTTTCACAGACACAGAACAGCTGTGAGAAGAGCAGCTaGGGAGACCCCTCTCCTCGACTGTGGAGATGTTCTCAATTCACC | + |
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Preference number: 1 (lower is better) Translates to: FLAFSQTQNSCEKSS*GDPSPRLWRCSQFT Trigger: GGTGAATTGAGAACATCTCCACAGTCGAGGAGAGGGGTCTCCTCAGCTGCTCTTCTCACAGCTGTTCTGTGTCTGTGAAAATGCCAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR-3UTR CCA 90 bp | GGGAAGGACAGGAGAGCCAGGGCCGAGGTAGGAGGTAGAGTTAGCATTTACATCTTCAGTCCTTTGCGGTaGACAGATCCAGCACCCAGG | + |
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Preference number: 2 (lower is better) Translates to: GKDRRARAEVGGRVSIYIFSPLR*TDPAPR Trigger: CCTGGGTGCTGGATCTGTCCACCGCAAAGGACTGAA...GATGTAAATGCTAACTCTACCTCCTACCTCGGCCCTGGCTCTCCTGTCCTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR-3UTR GCA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACAATCTTTCTCCGGTCTTaGAGCCCCTCCCTACCCTCT | + |
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Preference number: 2 (lower is better) Translates to: WRCSQFTPKCTLWITFYTIFLRS*SPSLPS Trigger: AGAGGGTAGGGAGGGGCTGCAAGACCGGAGAAAGAT...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR-3UTR TCA 90 bp | GAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACACCTCAGGTGAAGGGCAATaGAGACACTTCATCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: EMFSIHPQMHSLDNLLHTSGEGQ*RHFIFP Trigger: AGGGAAGATGAAGTGTCTTCATTGCCCTTCACCTGA...GGTGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR GCA 72 bp | GCGGCGCACAGGGCCACCTATGCTCCTTCAGTCCTTTaGGGTGGACAGATCCAGCACCCAGGCTGGCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: AAHRATYAPSVL*GGQIQHPGWLR Trigger: TCTCAGCCAGCCTGGGTGCTGGATCTGTCCACCGCAAAGGACTGAAGGAGCATAGGTGGCCCTGTGCGCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR GCA 72 bp | ATCCAGCACCCAGGCTGGCTGAGAGGTCACGGGCCCTaGCTGACTATAATGTGTACTGACCCCCTAGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: IQHPGWLRGHGP*LTIMCTDPLAG Trigger: ACCTGCTAGGGGGTCAGTACACATTATAGTCAGGCAGGGCCCGTGACCTCTCAGCCAGCCTGGGTGCTGGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR TCA 72 bp | TCTCCGGTCTTGCAGCCCCTCCCTACCCTCTTCAGGTaGAGGGCAATGAAGACACTTCATCTTCCCTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: SPVLQPLPTLFR*RAMKTLHLPSP Trigger: GGGGGAGGGAAGATGAAGTGTCTTCATTGCCCTTCACCTGAAGAGGGTAGGGAGGGGCTGCAAGACCGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR-3UTR CAA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACACATCTTTCTCCGGTCTaGCAGCCCCTCCCTACCCTC | + |
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Preference number: 3 (lower is better) Translates to: WRCSQFTPKCTLWITFYTHLSPV*QPLPTL Trigger: GAGGGTAGGGAGGGGCTGCAAGACCGGAGAAAGATG...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR-3UTR CAA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACATGCTCCTTCAGTCCTTaGCGGTGGACAGATCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: WRCSQFTPKCTLWITFYTCSFSP*RWTDPA Trigger: TGCTGGATCTGTCCACCGCAAAGGACTGAAGGAGCA...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR CCA 72 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTaGATAACCTTCTACACACCCTCCCCCTGCAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: WRCSQFTPKCTL*ITFYTPSPCKD Trigger: ATCTTTGCAGGGGGAGGGTGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| 3UTR CAA 72 bp | TGCGGCGCACAGGGCCACCTATGCTCCTTCAGTCCTTaGCGGTGGACAGATCCAGCACCCAGGCTGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: CGAQGHLCSFSP*RWTDPAPRLAE Trigger: CTCAGCCAGCCTGGGTGCTGGATCTGTCCACCGCAAAGGACTGAAGGAGCATAGGTGGCCCTGTGCGCCGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR GCA 90 bp | GGGAAGGACAGGAGAGCCAGGGCCGAGGTAGGAGGTAGAGTTAGCATTTACATCGGTGAGCGTGGCAGCTaGCAGCTCTCGGACCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GKDRRARAEVGGRVSIYIGERGS*QLSDRQ Trigger: CTGGCGGTCCGAGAGCTGGCAGCTGCCACGCTCACC...GATGTAAATGCTAACTCTACCTCCTACCTCGGCCCTGGCTCTCCTGTCCTTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GGGAAGGACAGGAGAGCCAGGGCCGAGGTAGGAGGTAGAGTTAGCATTTACATCCTGCAGCCCTGCACATaGGTGAGCGTGGCAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GKDRRARAEVGGRVSIYILQPCT*VSVAAA Trigger: GGCAGCTGCCACGCTCACCCATGTGCAGGGCTGCAG...GATGTAAATGCTAACTCTACCTCCTACCTCGGCCCTGGCTCTCCTGTCCTTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR GCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTAGCCCCCGGTTGGTCCTaGTTGTTGGCCAGCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLAPGWS*LLASTS Trigger: GCTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGC...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR GCA 90 bp | GCCAGGGCCGAGGTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCACAGCACTGCAGCCCTaGACATGGGTGAGCGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: ARAEVGGRVSIYIFLRSCTALQP*TWVSVA Trigger: TGCCACGCTCACCCATGTGCAGGGCTGCAGTGCTGT...GCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTACCTCGGCCCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTACTCAGTGCCCCCGGTTaGTCCTGCTTGTTGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLLSAPG*SCLLAS Trigger: GCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAG...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR GCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTATGCAGGGCCTGGAAGTaGGGCAGAAAGGACGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLCRAWK*GRKDEA Trigger: AGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCA...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR GCA 90 bp | GAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACACCTGTTCCAGGCCTGGCTaGAGGCCCAGCCCGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: EMFSIHPQMHSLDNLLHTCSRPG*RPSPST Trigger: TGTGGACGGGCTGGGCCTGCAGCCAGGCCTGGAACA...GGTGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTAGTAGGAGCGCCACAGTaGCCGAAGCTTCTCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLVGAPQ*PKLLLT Trigger: GGTCAGGAGAAGCTTCGGCCACTGTGGCGCTCCTAC...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR TCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTACGGAATCCAACCCAATaGCGACGACATGCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLRNPTQ*RRHAGP Trigger: AGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCG...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACACCAGCACTGGCACCCCCTaGTTGTCGGAAGCCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: EMFSIHPQMHSLDNLLHTSTGTP*LSEALL Trigger: CAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCT...GGTGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | TGCACTCTCTGGATAACCTTCTACACACCCTCCCCCTGCAAAGATAAAAATATAGGCCAGCACCAGCACTaGCACCCCCTGGTTGTCGGA | + |
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Preference number: 4 (lower is better) Translates to: CTLWITFYTPSPCKDKNIGQHQH*HPLVVG Trigger: TCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCC...TATATTTTTATCTTTGCAGGGGGAGGGTGTGTAGAAGGTTATCCAGAGAGTGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR TCA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACAGGCCGAAGCTTCTCCTaGCCCCCAACATCCCACACT | + |
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Preference number: 4 (lower is better) Translates to: WRCSQFTPKCTLWITFYTGRSFS*PPTSHT Trigger: AGTGTGGGATGTTGGGGGTCAGGAGAAGCTTCGGCC...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACACCGTTGGTCCTGCTTGTTaGCCAGCACCAGCACTGGCA | + |
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Preference number: 4 (lower is better) Translates to: EMFSIHPQMHSLDNLLHTVGPAC*PAPALA Trigger: TGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAAC...GGTGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACAACGACATGCAGGGCCTaGAAGTGCGGCAGAAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: WRCSQFTPKCTLWITFYTTTCRA*KCGRKD Trigger: GTCCTTTCTGCCGCACTTCCAGGCCCTGCATGTCGT...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTAGGTGTAACTCCATTCTaGCTTCCTCTAACCTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLGVTPF*LPLTSQ Trigger: CTGAGAGGTTAGAGGAAGCCAGAATGGAGTTACACC...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CCA 90 bp | TGGAGATGTTCTCAATTCACCCCCAAATGCACTCTCTGGATAACCTTCTACACATTGGTGGGGACGCTCTaGACAAACTCCTTGAACTTG | + |
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Preference number: 4 (lower is better) Translates to: WRCSQFTPKCTLWITFYTLVGTL*TNSLNL Trigger: CAAGTTCAAGGAGTTTGTCCAGAGCGTCCCCACCAA...TGTGTAGAAGGTTATCCAGAGAGTGCATTTGGGGGTGAATTGAGAACATCTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 90 bp | GGCAGCTGCCAGCTCTCGGACCGCCAGCCTCTTCTCCACCTCGGCTaGACTCAGTGCCCCCGGTTGGTCCTGCTTGTTGGCCAGCACCAG | + |
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Preference number: 5 (lower is better) Translates to: GSCQLSDRQPLLHLG*TQCPRLVLLVGQHQ Trigger: CTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCTGGCGGTCCGAGAGCTGGCAGCTGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 90 bp | CAGCTCTCGGACCGCCAGCCTCTTCTCCACCTCGGCTGCACTCAGTaGCCCCGGTTGGTCCTGCTTGTTGGCCAGCACCAGCACTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: QLSDRQPLLHLGCTQ*PRLVLLVGQHQHWH Trigger: GTGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCTGGCGGTCCGAGAGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 90 bp | AGCCTCTTCTCCACCTCGGCTGCACTCAGTGCCCCCGGTTGGTCCTaGTTGTTGGCCAGCACCAGCACTGGCACCCCCTGGTTGTCGGAA | + |
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Preference number: 5 (lower is better) Translates to: SLFSTSAALSAPGWS*LLASTSTGTPWLSE Trigger: TTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 90 bp | AGAAGGGAAGTCTTCCCCGCGGAATCCAACCCAATGACGACGACATaGAGGGCCTGGAAGTGCGGCAGAAAGGACGAGGCTGTAGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: RREVFPAESNPMTTT*RAWKCGRKDEAVGA Trigger: GGCCCCTACAGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCGCGGGGAAGACTTCCCTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CCA 90 bp | GTCTTCCCCGCGGAATCCAACCCAATGACGACGACATGCAGGGCCTaGAAGTGCGGCAGAAAGGACGAGGCTGTAGGGGCCATTTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: VFPAESNPMTTTCRA*KCGRKDEAVGAISV Trigger: GACTGAAATGGCCCCTACAGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCGCGGGGAAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS TCA 90 bp | TGGCCAGCACCAGCACTGGCACCCCCTGGTTGTCGGAAGCCTTGCTaGTCCGGTGTAACTCCATTCTGGCTTCCTCTAACCTCTCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: WPAPALAPPGCRKPC*SGVTPFWLPLTSQS Trigger: AGACTGAGAGGTTAGAGGAAGCCAGAATGGAGTTACACCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CAA 90 bp | GTAGGAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTAACTGGCACCCCCTGGTaGTCGGAAGCCTTGCTGATC | + |
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Preference number: 5 (lower is better) Translates to: VGGRVSIYIFLRSCSPSLTGTPW*SEALLI Trigger: GATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGT...TAGGGAGGGGCTGCAAGACCGGAGAAAGATGTAAATGCTAACTCTACCTCCTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CAA 90 bp | TGCACTCTCTGGATAACCTTCTACACACCCTCCCCCTGCAAAGATAAAAATATAGGTTGGTCCTGCTTGTaGGCCAGCACCAGCACTGGC | + |
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Preference number: 5 (lower is better) Translates to: CTLWITFYTPSPCKDKNIGWSCL*ASTSTG Trigger: GCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACC...TATATTTTTATCTTTGCAGGGGGAGGGTGTGTAGAAGGTTATCCAGAGAGTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CAA 90 bp | TGCACTCTCTGGATAACCTTCTACACACCCTCCCCCTGCAAAGATAAAAATATACCCGGTTGGTCCTGCTaGTTGGCCAGCACCAGCACT | + |
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Preference number: 5 (lower is better) Translates to: CTLWITFYTPSPCKDKNIPGWSC*LASTST Trigger: AGTGCTGGTGCTGGCCAACAAGCAGGACCAACCGGG...TATATTTTTATCTTTGCAGGGGGAGGGTGTGTAGAAGGTTATCCAGAGAGTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS-3UTR CAA 90 bp | TGCACTCTCTGGATAACCTTCTACACACCCTCCCCCTGCAAAGATAAAAATATAACTCAGTGCCCCCGGTaGGTCCTGCTTGTTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CTLWITFYTPSPCKDKNITQCPR*VLLVGQ Trigger: CTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGT...TATATTTTTATCTTTGCAGGGGGAGGGTGTGTAGAAGGTTATCCAGAGAGTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 72 bp | GACCGCCAGCCTCTTCTCCACCTCGGCTGCACTCAGTaGCCCCGGTTGGTCCTGCTTGTTGGCCAGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: DRQPLLHLGCTQ*PRLVLLVGQHQ Trigger: CTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCTGGCGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 72 bp | CAGCTCTCGGACCGCCAGCCTCTTCTCCACCTCGGCTaGACTCAGTGCCCCCGGTTGGTCCTGCTTGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: QLSDRQPLLHLG*TQCPRLVLLVG Trigger: GCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAGGCTGGCGGTCCGAGAGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 72 bp | AGCACTGCAGCCCTGCACATGGGTGAGCGTGGCAGCTaGCAGCTCTCGGACCGCCAGCCTCTTCTCCACCTC | + |
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Preference number: 6 (lower is better) Translates to: STAALHMGERGS*QLSDRQPLLHL Trigger: GAGGTGGAGAAGAGGCTGGCGGTCCGAGAGCTGGCAGCTGCCACGCTCACCCATGTGCAGGGCTGCAGTGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CAA 90 bp | CTCTTCTCCACCTCGGCTGCACTCAGTGCCCCCGGTTGGTCCTGCTaGTTGGCCAGCACCAGCACTGGCACCCCCTGGTTGTCGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: LFSTSAALSAPGWSC*LASTSTGTPWLSEA Trigger: GGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CCA 72 bp | CTCTTCTCCACCTCGGCTGCACTCAGTGCCCCCGGTTaGTCCTGCTTGTTGGCCAGCACCAGCACTGGCACC | + |
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Preference number: 6 (lower is better) Translates to: LFSTSAALSAPG*SCLLASTSTGT Trigger: GGTGCCAGTGCTGGTGCTGGCCAACAAGCAGGACCAACCGGGGGCACTGAGTGCAGCCGAGGTGGAGAAGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CCA 72 bp | GCGGAATCCAACCCAATGACGACGACATGCAGGGCCTaGAAGTGCGGCAGAAAGGACGAGGCTGTAGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: AESNPMTTTCRA*KCGRKDEAVGA Trigger: GGCCCCTACAGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS GCA 72 bp | GTCTTCCCCGCGGAATCCAACCCAATGACGACGACATaGAGGGCCTGGAAGTGCGGCAGAAAGGACGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: VFPAESNPMTTT*RAWKCGRKDEA Trigger: AGCCTCGTCCTTTCTGCCGCACTTCCAGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCGCGGGGAAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS TCA 72 bp | CCAGCACTGGCACCCCCTGGTTGTCGGAAGCCTTGCTaGTCCGGTGTAACTCCATTCTGGCTTCCTCTAACC | + |
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Preference number: 6 (lower is better) Translates to: PALAPPGCRKPC*SGVTPFWLPLT Trigger: GGTTAGAGGAAGCCAGAATGGAGTTACACCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CAA 72 bp | AGCACCAGCACTGGCACCCCCTGGTTGTCGGAAGCCTaGCTGATCCGGTGTAACTCCATTCTGGCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: STSTGTPWLSEA*LIRCNSILASS Trigger: AGAGGAAGCCAGAATGGAGTTACACCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CAA 72 bp | TGCTTGTTGGCCAGCACCAGCACTGGCACCCCCTGGTaGTCGGAAGCCTTGCTGATCCGGTGTAACTCCATT | + |
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Preference number: 6 (lower is better) Translates to: CLLASTSTGTPW*SEALLIRCNSI Trigger: AATGGAGTTACACCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCAACAAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CAA 90 bp | TTGTTGGCCAGCACCAGCACTGGCACCCCCTGGTTGTCGGAAGCCTaGCTGATCCGGTGTAACTCCATTCTGGCTTCCTCTAACCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LLASTSTGTPWLSEA*LIRCNSILASSNLS Trigger: TGAGAGGTTAGAGGAAGCCAGAATGGAGTTACACCGGATCAGCAAGGCTTCCGACAACCAGGGGGTGCCAGTGCTGGTGCTGGCCAACAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS TCA 72 bp | AAAGAAGGGAAGTCTTCCCCGCGGAATCCAACCCAATaGCGACGACATGCAGGGCCTGGAAGTGCGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: KEGKSSPRNPTQ*RRHAGPGSAAE Trigger: TTCTGCCGCACTTCCAGGCCCTGCATGTCGTCGTCATTGGGTTGGATTCCGCGGGGAAGACTTCCCTTCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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| CDS CAA 72 bp | CCCAGGGGCACGCGGATCTTCTCAGTATTAAAGCCCTaGGTGGGGACGCTCTGGACAAACTCCTTGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: PRGTRIFSVLKP*VGTLWTNSLNL Trigger: CAAGTTCAAGGAGTTTGTCCAGAGCGTCCCCACCAAGGGCTTTAATACTGAGAAGATCCGCGTGCCCCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039388.3 |
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