Pregenerated sensors for ARL4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047446Ensembl transcript IDs: ENSMUST00000101472.4, ENSMUST00000136441.8, ENSMUST00000144910.2, ENSMUST00000146905.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCAAGGCATCTTCAGGTGCCGGGAGAAAGTGACCTTAAAGACACCTaGATTCCCAGGATCGTGAGTTCCAAGCCAGCCTGGGCTCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: SRHLQVPGESDLKDT*IPRIVSSKPAWAPV Trigger: CACTGGAGCCCAGGCTGGCTTGGAACTCACGATCCTGGGAATGCAGGTGTCTTTAAGGTCACTTTCTCCCGGCACCTGAAGATGCCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR TCA 90 bp | CAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTaGTGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTTTGC | + |
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Preference number: 1 (lower is better) Translates to: QGSQDWNSSRSGSRS*CRGHGGMFLTGLLC Trigger: GCAAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 90 bp | AGACAGATAATTAAGGCTGGGCCGGAAAGTGTGGTAGTGGGTTACTaGGAAGCAGGGGCAGTCAAGAGGAGTACAGGAATTCCTGGGGAG | + |
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Preference number: 1 (lower is better) Translates to: RQIIKAGPESVVVGY*EAGAVKRSTGIPGE Trigger: CTCCCCAGGAATTCCTGTACTCCTCTTGACTGCCCCTGCTTCTCAGTAACCCACTACCACACTTTCCGGCCCAGCCTTAATTATCTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 90 bp | TCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTaGCTCAGGAGTAAAGATGGTGGAAGCCAGGATAGCTGGATCTCG | + |
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Preference number: 1 (lower is better) Translates to: SSQRAPWQSPQVKQN*LRSKDGGSQDSWIS Trigger: CGAGATCCAGCTATCCTGGCTTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
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| 3UTR TCA 90 bp | CAGTCTGACTGTGGGAGTGCTTTAAGAAGAAATAATGTCAAACCCTaGGGAGAAAGAGCAGAACTTCTTGTTCTCGGCCTAATGATCCCC | + |
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Preference number: 1 (lower is better) Translates to: QSDCGSALRRNNVKP*GERAELLVLGLMIP Trigger: GGGGATCATTAGGCCGAGAACAAGAAGTTCTGCTCTTTCTCCTCAGGGTTTGACATTATTTCTTCTTAAAGCACTCCCACAGTCAGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 90 bp | GCAAAAGGAATGGAGGCTAAAGGCAACCAGAACAAGGATGGACTTTaGACCCTAGCAGTCAGACTTCAGAGGCAATACTTGATTGTGATC | + |
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Preference number: 1 (lower is better) Translates to: AKGMEAKGNQNKDGL*TLAVRLQRQYLIVI Trigger: GATCACAATCAAGTATTGCCTCTGAAGTCTGACTGCTAGGGTTCAAAGTCCATCCTTGTTCTGGTTGCCTTTAGCCTCCATTCCTTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR CCA 90 bp | TCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTaGGGAGGACAGGGTTTATTCGGCTTACACTTCCATACTGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: SGFLFLHKHHDQEAS*GGQGLFGLHFHTAV Trigger: AACAGCAGTATGGAAGTGTAAGCCGAATAAACCCTGTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 90 bp | TCCCCTACGGACTCCTGTATTAAATACTTGGTCCCAGCCATTGTTTaGTTTTATCTTGAGGTGGAAAGTTTAGGAGGTGGGACCTTGGTA | + |
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Preference number: 1 (lower is better) Translates to: SPTDSCIKYLVPAIV*FYLEVESLGGGTLV Trigger: TACCAAGGTCCCACCTCCTAAACTTTCCACCTCAAGATAAAATCAAACAATGGCTGGGACCAAGTATTTAATACAGGAGTCCGTAGGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 90 bp | TCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTaGCTCAGGAGTAAAGATGGTGGAAGCCAGGATCTAAGAAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: SSQRAPWQSPQVKQN*LRSKDGGSQDLRRK Trigger: TTTTCTTCTTAGATCCTGGCTTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 90 bp | CTTTGCTACTTCTCCCGTTCATTTTCTAGGCTCCTAATTGCTATCTaGACTACTGTACCATTTCTTCCTACAACCAGAGCTAGGAAGCTC | + |
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Preference number: 1 (lower is better) Translates to: LCYFSRSFSRLLIAI*TTVPFLPTTRARKL Trigger: GAGCTTCCTAGCTCTGGTTGTAGGAAGAAATGGTACAGTAGTGCAGATAGCAATTAGGAGCCTAGAAAATGAACGGGAGAAGTAGCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR CCA 90 bp | ACAGCTCTACTCCTAACACAGGCACATTTGACATGGACGCTCCACTaGGTGCTACGTCATTTTGTAACAAGAATCAAAGTTCCAAAAATT | + |
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Preference number: 1 (lower is better) Translates to: TALLLTQAHLTWTLH*VLRHFVTRIKVPKI Trigger: AATTTTTGGAACTTTGATTCTTGTTACAAAATGACGTAGCACCCAGTGGAGCGTCCATGTCAAATGTGCCTGTGTTAGGAGTAGAGCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR TCA 90 bp | TCTGTAGCTGTATCCATTGGAACTGGGCTCCACAACTCTGCACTTTaGTTGGTTGTGGTTTTCTATAAAATAGTCTGCATTTGTTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: SVAVSIGTGLHNSAL*LVVVFYKIVCICCR Trigger: TCTGCAACAAATGCAGACTATTTTATAGAAAACCACAACCAATCAAAGTGCAGAGTTGTGGAGCCCAGTTCCAATGGATACAGCTACAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 90 bp | AGAAGGAAGATACAACCTAGAAAATATTTAGCAGTGGGTACTGCTTaGGGGGCAGGACAATACACAATGTCTAAAGGCACAGATTTCAAA | + |
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Preference number: 1 (lower is better) Translates to: RRKIQPRKYLAVGTA*GAGQYTMSKGTDFK Trigger: TTTGAAATCTGTGCCTTTAGACATTGTGTATTGTCCTGCCCCTCAAGCAGTACCCACTGCTAAATATTTTCTAGGTTGTATCTTCCTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 90 bp | TCAAAAATCAAACCGAGTCCTGTTAGCAAAGTGCACTTCCTTTGGTaGTTTCAGTACAAACAGCTGTTGGCTTCAAACATAGGAAACATG | + |
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Preference number: 1 (lower is better) Translates to: SKIKPSPVSKVHFLW*FQYKQLLASNIGNM Trigger: CATGTTTCCTATGTTTGAAGCCAACAGCTGTTTGTACTGAAATCACCAAAGGAAGTGCACTTTGCTAACAGGACTCGGTTTGATTTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR TCA 90 bp | CAGCTGTTGGCTTCAAACATAGGAAACATGCTGATTTGCTGTATGTaGTTTCTGGAAATAAGTCTTCCTGGAGAGAAAAATGAAAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: QLLASNIGNMLICCM*FLEISLPGEKNESS Trigger: AGAGCTTTCATTTTTCTCTCCAGGAAGACTTATTTCCAGAAATCACATACAGCAAATCAGCATGTTTCCTATGTTTGAAGCCAACAGCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR GCA 90 bp | CATTGTACCCATAATCCCAACTCGTACCAAAACATTCTAATTATGTaGCCTTTACTCTCATTCTTAAGCTATCATCCAGTTACCTACAGA | + |
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Preference number: 1 (lower is better) Translates to: HCTHNPNSYQNILIM*PLLSFLSYHPVTYR Trigger: TCTGTAGGTAACTGGATGATAGCTTAAGAATGAGAGTAAAGGGCACATAATTAGAATGTTTTGGTACGAGTTGGGATTATGGGTACAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR GCA 90 bp | TCATTGTTGCTGCTGCTGTTGTTGTTGTTGATGTTGTTGAGATCATaGATAGGCAATCATATTGATGAGATTTTTATGAGTACAGCTTCT | + |
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Preference number: 1 (lower is better) Translates to: SLLLLLLLLLMLLRS*IGNHIDEIFMSTAS Trigger: AGAAGCTGTACTCATAAAAATCTCATCAATATGATTGCCTATGCATGATCTCAACAACATCAACAACAACAACAGCAGCAGCAACAATGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR TCA 90 bp | CATGGAGGGATGTTCCTTACTGGCTTGCTTTGCCTGCTCTCTTATAGAACCCAAGTCAGTGCAGGTCTGTaGCCCCATGGTCTCCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: HGGMFLTGLLCLLSYRTQVSAGL*PHGLPE Trigger: TTCAGGGAGACCATGGGGTCACAGACCTGCACTGAC...TTGGGTTCTATAAGAGAGCAGGCAAAGCAAGCCAGTAAGGAACATCCCTCCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCCCGACATGTGCAGTCTaGCTGTGGGAGTGCTTTAAG | + |
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Preference number: 2 (lower is better) Translates to: LPYCCSSPRKSGLELKQVPTCAV*LWECFK Trigger: CTTAAAGCACTCCCACAGTCAGACTGCACATGTCGG...GACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR CCA 90 bp | GTCACTGGGCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAAGGAAGCCAGGATAGCTaGATCTCGTGGAGGCATCTC | + |
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Preference number: 2 (lower is better) Translates to: VTGLKSKSTMAKSTGETKGSQDS*ISWRHL Trigger: GAGATGCCTCCACGAGATCCAGCTATCCTGGCTTCC...TTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCCCAGTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTGCCTCATACACCCACAGAGATaGGGAGAAACCCAGATACGC | + |
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Preference number: 2 (lower is better) Translates to: GSSQRAPWQSPQVKQNCLIHPQR*GETQIR Trigger: GCGTATCTGGGTTTCTCCCCATCTCTGTGGGTGTAT...GAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCTTACAATAATGTCAAACCCTaGGGAGAAAGAGCAGAACTT | + |
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Preference number: 2 (lower is better) Translates to: KQVRKQELMQRPWRDVPYNNVKP*GERAEL Trigger: AAGTTCTGCTCTTTCTCCTCAGGGTTTGACATTATT...GTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTCATTGTCACTGGGCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGTTCATAAAGCCAGGATaGTGGCACACATCTGTATTC | + |
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Preference number: 2 (lower is better) Translates to: TSLSLGSSQRAPWQSPQVFIKPG*WHTSVF Trigger: GAATACAGATGTGTGCCACCATCCTGGCTTTATGAA...CACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCCCAGTGACAATGAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTCAGGTGCCTGTTAGGGAAACTCAGAAGACAGATAATTAAGGCTGGGCCGATGTGGCTTCCTTTGTaGCAAGAAACACTTAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: KVRCLLGKLRRQIIKAGPMWLPL*QETLSR Trigger: CCTGCTAAGTGTTTCTTGTCACAAAGGAAGCCACAT...CGGCCCAGCCTTAATTATCTGTCTTCTGAGTTTCCCTAACAGGCACCTGACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR GCA 90 bp | AACCTCATTGTCACTGGGCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTAATAACCAGTTGGTGTaGTCTTCCCCTCATTCACTT | + |
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Preference number: 2 (lower is better) Translates to: NLIVTGLKSKSTMAKSTGNNQLV*SSPHSL Trigger: AAGTGAATGAGGGGAAGAGCACACCAACTGGTTATT...ACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCCCAGTGACAATGAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
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| 3UTR CAA 90 bp | ACAGCTTCTGACATTACTAGGAGAGACAATCTCCCAGCAAACTTCTaGATCCTCTCCCTGGCTCTTACCATCTATCTTACCCTCTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: TASDITRRDNLPANF*ILSLALTIYLTLFY Trigger: GTAGAAGAGGGTAAGATAGATGGTAAGAGCCAGGGAGAGGATCAAGAAGTTTGCTGGGAGATTGTCTCTCCTAGTAATGTCAGAAGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCATAATCCCAACTCGTACCAAAACATTCTAATTATGTGCCCTTTACTCTCAATCCCTGGCTGTCCTTaGACTCAGAGATCTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: THNPNSYQNILIMCPLLSIPGCP*TQRSAS Trigger: GGAGGCAGATCTCTGAGTTCAAGGACAGCCAGGGAT...TGAGAGTAAAGGGCACATAATTAGAATGTTTTGGTACGAGTTGGGATTATGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR CAA 90 bp | ATAACCAGTTGGTGTGCTCTTCCCCTCATTCACTTTATGATGTCATaGTTGCTGCTGCTTCTTATGTTGAGCCAGAGAAAGTACTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: ITSWCALPLIHFMMS*LLLLLMLSQRKYCG Trigger: TCCACAGTACTTTCTCTGGCTCAACATAAGAAGCAGCAGCAACAATGACATCATAAAGTGAATGAGGGGAAGAGCACACCAACTGGTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCTTCACATACAGGAGGCCCAGAGTTTGATCCCTGACACTTTAAAAAGACAAGAAACTAGCCTTCTGTaGAAACCTCACCAGAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: LLHIQEAQSLIPDTLKRQETSLL*KPHQRK Trigger: TTTTCTCTGGTGAGGTTTCCACAGAAGGCTAGTTTC...TTGTCTTTTTAAAGTGTCAGGGATCAAACTCTGGGCCTCCTGTATGTGAAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR-3UTR TCA 90 bp | CAAACAGCTGTTGGCTTCAAACATAGGAAACATGCTGATTTGCTGTATGTGATTTGCATGTGTACACACTaGTCTCCCTTAACATTTCCA | + |
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Preference number: 2 (lower is better) Translates to: QTAVGFKHRKHADLLYVICMCTH*SPLTFP Trigger: TGGAAATGTTAAGGGAGATCAGTGTGTACACATGCA...AATCACATACAGCAAATCAGCATGTTTCCTATGTTTGAAGCCAACAGCTGTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCATAATCCCAACTCGTACCAAAACATTCTAATTATGTGCCCTTTACTCTCAGCTCAGAGCACATACTaGAAGGTACCTTACATTTTC | + |
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Preference number: 2 (lower is better) Translates to: THNPNSYQNILIMCPLLSAQSTY*KVPYIF Trigger: GAAAATGTAAGGTACCTTTCAGTATGTGCTCTGAGC...TGAGAGTAAAGGGCACATAATTAGAATGTTTTGGTACGAGTTGGGATTATGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR-3UTR GCA 90 bp | CAAACAGCTGTTGGCTTCAAACATAGGAAACATGCTGATTTGCTGTATGTGATTCTATACACCAAAACATaGTTGTCAGGAAAACTAACC | + |
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Preference number: 2 (lower is better) Translates to: QTAVGFKHRKHADLLYVILYTKT*LSGKLT Trigger: GGTTAGTTTTCCTGACAAGCATGTTTTGGTGTATAG...AATCACATACAGCAAATCAGCATGTTTCCTATGTTTGAAGCCAACAGCTGTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR-3UTR CCA 90 bp | AATACAGTCTCCTCAGACTGTTTAATATTACTCCTATGTGTGTTTTCAGGAATGTTCATAAAGCCAGGATaGTGGCACACATCTGTATTC | + |
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Preference number: 2 (lower is better) Translates to: NTVSSDCLILLLCVFSGMFIKPG*WHTSVF Trigger: GAATACAGATGTGTGCCACCATCCTGGCTTTATGAA...CATTCCTGAAAACACACATAGGAGTAATATTAAACAGTCTGAGGAGACTGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCACCAGTTAATTGTCTTAAAATGGCTTTGCTACTTCTCCCGTTCATTTCTCCTAATTGCTATCTaGACTACTGTACCATTTCTT | + |
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Preference number: 2 (lower is better) Translates to: KQHQLIVLKWLCYFSRSFLLIAI*TTVPFL Trigger: AAGAAATGGTACAGTAGTGCAGATAGCAATTAGGAG...AAATGAACGGGAGAAGTAGCAAAGCCATTTTAAGACAATTAACTGGTGCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
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| 3UTR CAA 90 bp | TCCAAGAGAGAAGAAATACACAAAAGCGAGATGAAGAGTGATCTTTaGATCACCATATTTATAGCTTCAATAACTTCAAGGCATCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: SKREEIHKSEMKSDL*ITIFIASITSRHLQ Trigger: CTGAAGATGCCTTGAAGTTATTGAAGCTATAAATATGGTGATCAAAAGATCACTCTTCATCTCGCTTTTGTGTATTTCTTCTCTCTTGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR TCA 72 bp | CAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTaGTGCAGAGGCCATGGAGGGATGTTCCTTACTGGC | + |
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Preference number: 3 (lower is better) Translates to: QDWNSSRSGSRS*CRGHGGMFLTG Trigger: GCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 72 bp | CTTCAGGTGCCGGGAGAAAGTGACCTTAAAGACACCTaGATTCCCAGGATCGTGAGTTCCAAGCCAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: LQVPGESDLKDT*IPRIVSSKPAW Trigger: CCAGGCTGGCTTGGAACTCACGATCCTGGGAATGCAGGTGTCTTTAAGGTCACTTTCTCCCGGCACCTGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR CCA 72 bp | ATGATCCCCAAGGAGCACATGATACACCCACAGAGATaGGGAGAAACCCAGATACGCCCGTCACAGCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: MIPKEHMIHPQR*GETQIRPSQQA Trigger: TGCCTGCTGTGACGGGCGTATCTGGGTTTCTCCCCATCTCTGTGGGTGTATCATGTGCTCCTTGGGGATCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR CCA 72 bp | AAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATaGAGGGATGTTCCTTACTGGCTTGCTTTGCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: KQVRKQELMQRP*RDVPYWLALPA Trigger: AGCAGGCAAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR CCA 72 bp | GCTTCTGAGGTGGATGCCTTCATAAAGCCAGGATGGTaGCACACATCTGTATTCCCAACACCCCCTAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: ASEVDAFIKPGW*HTSVFPTPPRG Trigger: TCCCCTAGGGGGTGTTGGGAATACAGATGTGTGCCACCATCCTGGCTTTATGAAGGCATCCACCTCAGAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR GCA 72 bp | AGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCTTTaGCTGCTCTCTTATAGAACCCAAGACTACCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: RGHGGMFLTGLL*LLSYRTQDYQP Trigger: GGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCAAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR TCA 72 bp | ATTAAGGCTGGGCCGGAAAGTGTGGTAGTGGGTTACTaGGAAGCAGGGGCAGTCAAGAGGAGTACAGGAATT | + |
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Preference number: 3 (lower is better) Translates to: IKAGPESVVVGY*EAGAVKRSTGI Trigger: AATTCCTGTACTCCTCTTGACTGCCCCTGCTTCTCAGTAACCCACTACCACACTTTCCGGCCCAGCCTTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 72 bp | GATGCAGAGGCCATGGAGGGATGTTCCTTACTGGCTTaGTTTGCCTGCTCTCTTATAGAACCCAAGACTACC | + |
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Preference number: 3 (lower is better) Translates to: DAEAMEGCSLLA*FACSLIEPKTT Trigger: GGTAGTCTTGGGTTCTATAAGAGAGCAGGCAAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR GCA 72 bp | AGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTaGCTCAGGAGTAAAGATGGTGGAAGCCAGGATAGC | + |
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Preference number: 3 (lower is better) Translates to: RAPWQSPQVKQN*LRSKDGGSQDS Trigger: GCTATCCTGGCTTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
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| 3UTR CCA 72 bp | ACCTCATTGTCACTGGGCTCAAGTCAAAGAGCACCATaGCAAAGTCCACAGGTGAAACAAAACTGCCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: TSLSLGSSQRAP*QSPQVKQNCLR Trigger: CCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCCCAGTGACAATGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR-3UTR CAA 90 bp | GTCACTGGGCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAAATGAGGAGCAGAAACTaGAGGATCCTGCAGCTCACT | + |
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Preference number: 3 (lower is better) Translates to: VTGLKSKSTMAKSTGETKMRSRN*RILQLT Trigger: AGTGAGCTGCAGGATCCTCAAGTTTCTGCTCCTCAT...TTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGCCCAGTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
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| 3UTR-3UTR CAA 90 bp | AGTCAAAGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTGCCTCAGGAGTATGAGGAGCAGAAACTaGAGGATCCTGCAGCTCACT | + |
|
Preference number: 3 (lower is better) Translates to: SQRAPWQSPQVKQNCLRSMRSRN*RILQLT Trigger: AGTGAGCTGCAGGATCCTCAAGTTTCTGCTCCTCAT...ACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
||
| 3UTR TCA 72 bp | CCTTACAGCTGGATCTCGTGGAGGCATCTCCCCAAATaGAGCTTCTTTCTCTGTGATAATTCCAGCCTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: PYSWISWRHLPK*SFFLCDNSSLC Trigger: ACACAGGCTGGAATTATCACAGAGAAAGAAGCTTCATTTGGGGAGATGCCTCCACGAGATCCAGCTGTAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | TCTAAGAAGAAAACATCCCATCAGAGTCACAAGCCTTaGGATCCACCTCCTCCTGCTAGTCATCACCTCGTG | + |
|
Preference number: 3 (lower is better) Translates to: SKKKTSHQSHKP*DPPPPASHHLV Trigger: CACGAGGTGATGACTAGCAGGAGGAGGTGGATCTCAAGGCTTGTGACTCTGATGGGATGTTTTCTTCTTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR GCA 72 bp | AGAGCACCATGGCAAAGTCCACAGGTGAAACAAAACTaGCTCAGGAGTAAAGATGGTGGAAGCCAGGATCTA | + |
|
Preference number: 3 (lower is better) Translates to: RAPWQSPQVKQN*LRSKDGGSQDL Trigger: TAGATCCTGGCTTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | ATGGAGGCTAAAGGCAACCAGAACAAGGATGGACTTTaGACCCTAGCAGTCAGACTTCAGAGGCAATACTTG | + |
|
Preference number: 3 (lower is better) Translates to: MEAKGNQNKDGL*TLAVRLQRQYL Trigger: CAAGTATTGCCTCTGAAGTCTGACTGCTAGGGTTCAAAGTCCATCCTTGTTCTGGTTGCCTTTAGCCTCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | GCTCAAGTCAAAGAGCACCATGGCAAAGTCCACAGGTaGAACAAAACTGCCTCAGGAGTAAAGATGGTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: AQVKEHHGKVHR*NKTASGVKMVE Trigger: TTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTGCCATGGTGCTCTTTGACTTGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
||
| 3UTR-3UTR CAA 90 bp | AAAGTCAGGTGCCTGTTAGGGAAACTCAGAAGACAGATAATTAAGGCTGGGCCGGGACGTATAAAGGTTTaGGACATGTTGCCTGAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: KVRCLLGKLRRQIIKAGPGRIKV*DMLPEK Trigger: TTTCTCAGGCAACATGTCCAAAACCTTTATACGTCC...CGGCCCAGCCTTAATTATCTGTCTTCTGAGTTTCCCTAACAGGCACCTGACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTGTGGTAGTGGGTTACTGAGAAGCAGGGGCAGTCAAGAGGAGTACAGGAATTCTGCATTTCAGCATTaGATTAAGATGTGGCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: KCGSGLLRSRGSQEEYRNSAFQH*IKMWLP Trigger: AGGAAGCCACATCTTAATCAAATGCTGAAATGCAGA...ATTCCTGTACTCCTCTTGACTGCCCCTGCTTCTCAGTAACCCACTACCACACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR-3UTR CAA 90 bp | CTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCTTTATGATGTCATTGTaGCTGCTGCTGTTGTTGTTG | + |
|
Preference number: 3 (lower is better) Translates to: LPYCCSSPRKSGLELKQVFMMSL*LLLLLL Trigger: CAACAACAACAGCAGCAGCAACAATGACATCATAAA...GACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | TGTCAAGTTAACACCCAAAACCAGCCAGTACAGTGTTaGATAACCAGTTGGTGTGCTCTTCCCCTCATTCAC | + |
|
Preference number: 3 (lower is better) Translates to: CQVNTQNQPVQC*ITSWCALPLIH Trigger: GTGAATGAGGGGAAGAGCACACCAACTGGTTATTCAACACTGTACTGGCTGGTTTTGGGTGTTAACTTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| 3UTR GCA 72 bp | CCGTTTGGTGTTTGTCTTAGTCAGGGTTTCTATTCCTaGACAAACATCATGACCAAGAAGCAAGTTGGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: PFGVCLSQGFYS*TNIMTKKQVGE Trigger: CTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAAACACCAAACGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCCTACGGACTCCTGTATTAAATACTTGGTCCCAGCCATTGTTTGATTTTATCTTAGGAGGTGGGACCTaGGTAGAAGAAATAGGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: PLRTPVLNTWSQPLFDFILGGGT*VEEIGH Trigger: GTGACCTATTTCTTCTACCAAGGTCCCACCTCCTAA...GATAAAATCAAACAATGGCTGGGACCAAGTATTTAATACAGGAGTCCGTAGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | TGTCAAGTTAACACCCAAAACCAGCCAGTACAGTGTTaGATAACCAGTTGGTGTGCTCTTCCCTGGAAAAGA | + |
|
Preference number: 3 (lower is better) Translates to: CQVNTQNQPVQC*ITSWCALPWKR Trigger: TCTTTTCCAGGGAAGAGCACACCAACTGGTTATTCAACACTGTACTGGCTGGTTTTGGGTGTTAACTTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR CCA 72 bp | CTCCTAACACAGGCACATTTGACATGGACGCTCCACTaGGTGCTACGTCATTTTGTAACAAGAATCAAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: LLTQAHLTWTLH*VLRHFVTRIKV Trigger: AACTTTGATTCTTGTTACAAAATGACGTAGCACCCAGTGGAGCGTCCATGTCAAATGTGCCTGTGTTAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGCTTCACATACAGGAGGCCCAGAGTTTGATCCCTGACACTTTAAAAAGACAATTTACAAAGCCTCGTTaGCAATTTCTTGGCAAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: LLHIQEAQSLIPDTLKRQFTKPR*QFLGKG Trigger: GCCTTTGCCAAGAAATTGCAAACGAGGCTTTGTAAA...TTGTCTTTTTAAAGTGTCAGGGATCAAACTCTGGGCCTCCTGTATGTGAAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGCTTCACATACAGGAGGCCCAGAGTTTGATCCCTGACACTTTAAAAAGACAACAGTACAAACAGCTGTaGGCTTCAAACATAGGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LLHIQEAQSLIPDTLKRQQYKQL*ASNIGN Trigger: GTTTCCTATGTTTGAAGCCAACAGCTGTTTGTACTG...TTGTCTTTTTAAAGTGTCAGGGATCAAACTCTGGGCCTCCTGTATGTGAAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR GCA 72 bp | AAACCAGCCAGTACAGTGTTGAATAACCAGTTGGTGTaGTCTTCCCTGGAAAAGACTATTTTTCTCACTCTC | + |
|
Preference number: 3 (lower is better) Translates to: KPASTVLNNQLV*SSLEKTIFLTL Trigger: GAGAGTGAGAAAAATAGTCTTTTCCAGGGAAGAGCACACCAACTGGTTATTCAACACTGTACTGGCTGGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGCTTCACATACAGGAGGCCCAGAGTTTGATCCCTGACACTTTAAAAAGACAACAAAGTGCACTTCCTTaGGTGATTTCAGTACAAACA | + |
|
Preference number: 3 (lower is better) Translates to: LLHIQEAQSLIPDTLKRQQSALP*VISVQT Trigger: TGTTTGTACTGAAATCACCAAAGGAAGTGCACTTTG...TTGTCTTTTTAAAGTGTCAGGGATCAAACTCTGGGCCTCCTGTATGTGAAGCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCCATAATCCCAACTCGTACCAAAACATTCTAATTATGTGCCCTTTACTCTCACAGGAGGCCCAGAGTTaGATCCCTGACACTTTAAAA | + |
|
Preference number: 3 (lower is better) Translates to: THNPNSYQNILIMCPLLSQEAQS*IPDTLK Trigger: TTTTAAAGTGTCAGGGATCAAACTCTGGGCCTCCTG...TGAGAGTAAAGGGCACATAATTAGAATGTTTTGGTACGAGTTGGGATTATGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR TCA 72 bp | ATACAACCTAGAAAATATTTAGCAGTGGGTACTGCTTaGGGGGCAGGACAATACACAATGTCTAAAGGCACA | + |
|
Preference number: 3 (lower is better) Translates to: IQPRKYLAVGTA*GAGQYTMSKGT Trigger: TGTGCCTTTAGACATTGTGTATTGTCCTGCCCCTCAAGCAGTACCCACTGCTAAATATTTTCTAGGTTGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | GACTCCTGTATTAAATACTTGGTCCCAGCCATTGTTTaGTTTTATCTTGAGGTGGAAAGTTTAGGAGGTGGG | + |
|
Preference number: 3 (lower is better) Translates to: DSCIKYLVPAIV*FYLEVESLGGG Trigger: CCCACCTCCTAAACTTTCCACCTCAAGATAAAATCAAACAATGGCTGGGACCAAGTATTTAATACAGGAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | AAACCGAGTCCTGTTAGCAAAGTGCACTTCCTTTGGTaGTTTCAGTACAAACAGCTGTTGGCTTCAAACATA | + |
|
Preference number: 3 (lower is better) Translates to: KPSPVSKVHFLW*FQYKQLLASNI Trigger: TATGTTTGAAGCCAACAGCTGTTTGTACTGAAATCACCAAAGGAAGTGCACTTTGCTAACAGGACTCGGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR GCA 72 bp | TTTATGTATCCCTGGCTGTCCTTGAACTCAGAGATCTaGCTCCCAGTTAAAAGCAGAGTGAAAATTTACACT | + |
|
Preference number: 3 (lower is better) Translates to: FMYPWLSLNSEI*LPVKSRVKIYT Trigger: AGTGTAAATTTTCACTCTGCTTTTAACTGGGAGGCAGATCTCTGAGTTCAAGGACAGCCAGGGATACATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR GCA 72 bp | AAACCAGCCAGTACAGTGTTGAATAACCAGTTGGTGTaGTCTTCCCCTCATTCACTTTATGATGTCATTGTT | + |
|
Preference number: 3 (lower is better) Translates to: KPASTVLNNQLV*SSPHSLYDVIV Trigger: AACAATGACATCATAAAGTGAATGAGGGGAAGAGCACACCAACTGGTTATTCAACACTGTACTGGCTGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| 3UTR-3UTR CAA 90 bp | AATACAGTCTCCTCAGACTGTTTAATATTACTCCTATGTGTGTTTTCAGGAATGCCAGCCAGTACAGTGTaGAATAACCAGTTGGTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: NTVSSDCLILLLCVFSGMPASTV*NNQLVC Trigger: GCACACCAACTGGTTATTCAACACTGTACTGGCTGG...CATTCCTGAAAACACACATAGGAGTAATATTAAACAGTCTGAGGAGACTGTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR TCA 72 bp | GTATCCATTGGAACTGGGCTCCACAACTCTGCACTTTaGTTGGTTGTGGTTTTCTATAAAATAGTCTGCATT | + |
|
Preference number: 3 (lower is better) Translates to: VSIGTGLHNSAL*LVVVFYKIVCI Trigger: AATGCAGACTATTTTATAGAAAACCACAACCAATCAAAGTGCAGAGTTGTGGAGCCCAGTTCCAATGGATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR GCA 72 bp | TTTGTTGCAGACCCAAAGCTGCAGTCTAGTCTAAGATaGAATATGAGTAAGCTTCCAAAACACTTTGATGTC | + |
|
Preference number: 3 (lower is better) Translates to: FVADPKLQSSLR*NMSKLPKHFDV Trigger: GACATCAAAGTGTTTTGGAAGCTTACTCATATTGCATCTTAGACTAGACTGCAGCTTTGGGTCTGCAACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCCATAATCCCAACTCGTACCAAAACATTCTAATTATGTGCCCTTTACTCTCATACACCAAAACATGCTaGTCAGGAAAACTAACCCAT | + |
|
Preference number: 3 (lower is better) Translates to: THNPNSYQNILIMCPLLSYTKTC*SGKLTH Trigger: ATGGGTTAGTTTTCCTGACAAGCATGTTTTGGTGTA...TGAGAGTAAAGGGCACATAATTAGAATGTTTTGGTACGAGTTGGGATTATGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR-3UTR CAA 90 bp | AATACAGTCTCCTCAGACTGTTTAATATTACTCCTATGTGTGTTTTCAGGAATGGCATACCTTCTTATGTaGAGCCAGAGAAAGTACTGT | + |
|
Preference number: 3 (lower is better) Translates to: NTVSSDCLILLLCVFSGMAYLLM*SQRKYC Trigger: ACAGTACTTTCTCTGGCTCAACATAAGAAGGTATGC...CATTCCTGAAAACACACATAGGAGTAATATTAAACAGTCTGAGGAGACTGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAACAGCTGTTGGCTTCAAACATAGGAAACATGCTGATTTGCTGTATGTGATTCCATTCATTAGCATTTaGTGTTTACAAAGCCTCGTT | + |
|
Preference number: 3 (lower is better) Translates to: QTAVGFKHRKHADLLYVIPFISI*CLQSLV Trigger: AACGAGGCTTTGTAAACACAAAATGCTAATGAATGG...AATCACATACAGCAAATCAGCATGTTTCCTATGTTTGAAGCCAACAGCTGTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR TCA 72 bp | AAAGCTACAGAAGTGGAAATACATATAAACTCCAAGTaGGATTGTTATCCTAATGCCTCCAGCTGTTTATTG | + |
|
Preference number: 3 (lower is better) Translates to: KATEVEIHINSK*DCYPNASSCLL Trigger: CAATAAACAGCTGGAGGCATTAGGATAACAATCTCACTTGGAGTTTATATGTATTTCCACTTCTGTAGCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR GCA 72 bp | CTGCTGCTGTTGTTGTTGTTGATGTTGTTGAGATCATaGATAGGCAATCATATTGATGAGATTTTTATGAGT | + |
|
Preference number: 3 (lower is better) Translates to: LLLLLLLMLLRS*IGNHIDEIFMS Trigger: ACTCATAAAAATCTCATCAATATGATTGCCTATGCATGATCTCAACAACATCAACAACAACAACAGCAGCAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| CDS-3UTR CCA 90 bp | CAAAGTCCACAGGTGAAACAAAACTGCCTCAGGAGTAAAGATGGTGGAAGCCAGGACAGGATGGAAGTCTaGTCTGACAGTCCATTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: QSPQVKQNCLRSKDGGSQDRMEV*SDSPFP Trigger: GGGGAATGGACTGTCAGACCAGACTTCCATCCTGTC...CTGGCTTCCACCATCTTTACTCCTGAGGCAGTTTTGTTTCACCTGTGGACTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136441.8 ENSMUST00000144910.2 |
||
| CDS-3UTR CCA 90 bp | ACCAGTTGGTGTGCTCTTCCCCTCATTCACTTTATGATGTCATTGTTGCTGCTGGACAGGATGGAAGTCTaGTCTGACAGTCCATTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: TSWCALPLIHFMMSLLLLDRMEV*SDSPFP Trigger: GGGGAATGGACTGTCAGACCAGACTTCCATCCTGTC...CAGCAGCAACAATGACATCATAAAGTGAATGAGGGGAAGAGCACACCAACTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| 3UTR CAA 72 bp | CTATTCTCCACAGCTCTACTCCTAACACAGGCACATTaGACATGGACGCTCCACTGGGTGCTACGTCATTTT | + |
|
Preference number: 4 (lower is better) Translates to: LFSTALLLTQAH*TWTLHWVLRHF Trigger: AAAATGACGTAGCACCCAGTGGAGCGTCCATGTCAAATGTGCCTGTGTTAGGAGTAGAGCTGTGGAGAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| CDS-3UTR CCA 90 bp | ACTCTTCAGCTTGTCAGAAATCAGACCCAGGAAAACCTATTCCACACCAATATAGACAGGATGGAAGTCTaGTCTGACAGTCCATTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: TLQLVRNQTQENLFHTNIDRMEV*SDSPFP Trigger: GGGGAATGGACTGTCAGACCAGACTTCCATCCTGTC...TATATTGGTGTGGAATAGGTTTTCCTGGGTCTGATTTCTGACAAGCTGAAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101472.4 ENSMUST00000146905.2 |
||
| 3UTR CAA 72 bp | CACCCAAAACCAGCCAGTACAGTGTTGAATAACCAGTaGGTGTGCTCTTCCCCTCATTCACTTTATGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: HPKPASTVLNNQ*VCSSPHSLYDV Trigger: GACATCATAAAGTGAATGAGGGGAAGAGCACACCAACTGGTTATTCAACACTGTACTGGCTGGTTTTGGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| 3UTR CAA 72 bp | TTTTATCTTGAGGTGGAAAGTTTAGGAGGTGGGACCTaGGTAGAAGAAATAGGTCACTTGGAGGGTAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: FYLEVESLGGGT*VEEIGHLEGRV Trigger: CACTCTACCCTCCAAGTGACCTATTTCTTCTACCAAGGTCCCACCTCCTAAACTTTCCACCTCAAGATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| 3UTR CAA 72 bp | TGGTGTGCTCTTCCCCTCATTCACTTTATGATGTCATaGTTGCTGCTGCTTCTTATGTTGAGCCAGAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: WCALPLIHFMMS*LLLLLMLSQRK Trigger: CTTTCTCTGGCTCAACATAAGAAGCAGCAGCAACAATGACATCATAAAGTGAATGAGGGGAAGAGCACACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| CDS-3UTR TCA 90 bp | CAGCTTGTCAGAAATCAGACCCAGGAAAACCTATTCCACACCAATATAAAAGGTCAACTTCTCAATCTCTaGGAGAGAGAGCGAGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QLVRNQTQENLFHTNIKGQLLNL*ERERVP Trigger: AGGAACTCGCTCTCTCTCTCAGAGATTGAGAAGTTG...ACCTTTTATATTGGTGTGGAATAGGTTTTCCTGGGTCTGATTTCTGACAAGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101472.4 ENSMUST00000146905.2 |
||
| 3UTR CAA 72 bp | TGTGCTCTTCCCCTCATTCACTTTATGATGTCATTGTaGCTGCTGCTTCTTATGTTGAGCCAGAGAAAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: CALPLIHFMMSL*LLLLMLSQRKY Trigger: GTACTTTCTCTGGCTCAACATAAGAAGCAGCAGCAACAATGACATCATAAAGTGAATGAGGGGAAGAGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144910.2 |
||
| CDS-3UTR TCA 90 bp | AAACAGCACCAGTTAATTGTCTTAAAATGGCTTTGCTACTTCTCCCGTTCATTTCAACTTCTCAATCTCTaGGAGAGAGAGCGAGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KQHQLIVLKWLCYFSRSFQLLNL*ERERVP Trigger: AGGAACTCGCTCTCTCTCTCAGAGATTGAGAAGTTG...AAATGAACGGGAGAAGTAGCAAAGCCATTTTAAGACAATTAACTGGTGCTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146905.2 |
||
| 3UTR CAA 72 bp | AATATTACTCCTATGTGTGTTTTCAGGAATGACCGTTaGGTGTTTGTCTTAGTCAGGGTTTCTATTCCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NITPMCVFRNDR*VFVLVRVSIPA Trigger: TGCAGGAATAGAAACCCTGACTAAGACAAACACCAAACGGTCATTCCTGAAAACACACATAGGAGTAATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136441.8 |
||
| CDS-3UTR CAA 90 bp | ACTCTTCAGCTTGTCAGAAATCAGACCCAGGAAAACCTATTCCACACCAATATAAGCTCAGTTCCCCCATaGCTAACAACTTCTCAATCT | + |
|
Preference number: 5 (lower is better) Translates to: TLQLVRNQTQENLFHTNISSVPP*LTTSQS Trigger: AGATTGAGAAGTTGTTAGCAATGGGGGAACTGAGCT...TATATTGGTGTGGAATAGGTTTTCCTGGGTCTGATTTCTGACAAGCTGAAGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000101472.4 ENSMUST00000146905.2 |
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