Pregenerated sensors for ARL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025035Ensembl transcript IDs: ENSMUST00000026009.10, ENSMUST00000236255.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTGTaGCTGTGCACAGACAGAAAAGCATTTGGTCAGAAAGCAGCAACC | + |
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Preference number: 1 (lower is better) Translates to: GSFSGCCPSPPATQL*LCTDRKAFGQKAAT Trigger: GGTTGCTGCTTTCTGACCAAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| 3UTR GCA 90 bp | CGGCTCCAGCGCCACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTaGGTTGACATTCTTGCAGACCCAGTTCATGCCATCCACACGGCA | + |
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Preference number: 1 (lower is better) Translates to: RLQRHHPPASVLFLL*VDILADPVHAIHTA Trigger: TGCCGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGGTGGCGCTGGAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR CCA 90 bp | CCCGCCCGCCACACAGCTGTGGCTGTGCACAGACAGAAAAGCATTTaGTCAGAAAGCAGCAACCCAGTGTTTCTAGGGCTGACTCTAGCT | + |
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Preference number: 1 (lower is better) Translates to: PARHTAVAVHRQKSI*SESSNPVFLGLTLA Trigger: AGCTAGAGTCAGCCCTAGAAACACTGGGTTGCTGCTTTCTGACCAAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGTGGCGGGCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| 3UTR TCA 90 bp | CCAGCGCCACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTGCGTTaGCATTCTTGCAGACCCAGTTCATGCCATCCACACGGCAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: PAPPSACLRFISSLR*HSCRPSSCHPHGRE Trigger: CTCTCTGCCGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGGTGGCGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR CAA 90 bp | TCCAGCGCCACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTGCGTaGACATTCTTGCAGACCCAGTTCATGCCATCCACACGGCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: SSATIRLPPFYFFFA*TFLQTQFMPSTRQR Trigger: TCTCTGCCGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGGTGGCGCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR CAA 90 bp | ACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTGCGTTGACATTCTaGCAGACCCAGTTCATGCCATCCACACGGCAGAGAGGGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: TIRLPPFYFFFALTF*QTQFMPSTRQRGKK Trigger: TTTCTTCCCTCTCTGCCGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTTGAAAAACGATACCGAGCCTCTGAGATCAGTTAAAATCTACTGCTGGACACAGCTGTGGCTGTaGACAGACAGAAAAGCATTT | + |
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Preference number: 2 (lower is better) Translates to: LYLKNDTEPLRSVKIYCWTQLWL*TDRKAF Trigger: AAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGT...CCAGCAGTAGATTTTAACTGATCTCAGAGGCTCGGTATCGTTTTTCAAATAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTTTTGCGTTGACATTCTaGCAGACCCAGTTCATGCCA | + |
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Preference number: 3 (lower is better) Translates to: AGMGIFLRLLSLPARHTAFALTF*QTQFMP Trigger: TGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAA...AGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR CCA 72 bp | GATACCGAGCCTCTGAGATCAGTTAAAATCTACTGCTaGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: DTEPLRSVKIYC*DGDLSQAAVPP Trigger: GGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGCAGTAGATTTTAACTGATCTCAGAGGCTCGGTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| 3UTR TCA 72 bp | CCATCCGCCTGCCTCCGTTTTATTTCTTCTTTGCGTTaGCATTCTTGCAGACCCAGTTCATGCCATCCACAC | + |
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Preference number: 3 (lower is better) Translates to: PSACLRFISSLR*HSCRPSSCHPH Trigger: GTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| 3UTR GCA 72 bp | AACGATACCGAGCCTCTGAGATCAGTTAAAATCTACTaGTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: NDTEPLRSVKIY*WDGDLSQAAVP Trigger: AGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGCAGTAGATTTTAACTGATCTCAGAGGCTCGGTATCGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | GCTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTCTCGGAGGCTGGGGCTaGCGTGAGCAGGTCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: AGMGIFLRLLSLPARHTALGGWG*REQVLL Trigger: AAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAG...AGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | AGTGTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCCTCGGAGGCTGGGGCTaGCGTGAGCAGGTCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SVSRADSSSRLQRHHPPALGGWG*REQVLL Trigger: AAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAG...GGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAACACT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR TCA 90 bp | AGTGTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCCTCGCCTGTGAGCGCTaGACAGGACTGGATCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SVSRADSSSRLQRHHPPALACER*TGLDLP Trigger: TGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAG...GGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAACACT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CCA 90 bp | CCAGTGTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCAGTTCATGCCATCCTaGACGCCCTCGCCTGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PVFLGLTLAPGSSATIRLQFMPS*TPSPVS Trigger: GCTCACAGGCGAGGGCGTCCAGGATGGCATGAACTG...CAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAACACTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS-3UTR CCA 90 bp | CTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTGTCGCACCTCCTGGTCTaGTGCACTTTTCAATTTGCG | + |
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Preference number: 4 (lower is better) Translates to: LGWGSFSGCCPSPPATQLSHLLV*CTFQFA Trigger: CGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGA...CAGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CCA 90 bp | GCTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTAGGATTCGCACCTCCTaGTCTGGTGCACTTTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: AGMGIFLRLLSLPARHTARIRTS*SGALFN Trigger: ATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCT...AGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | ACTGCTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTGATGTCTTCAGATaGGAGTTGCTTCAGCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: TAGMGIFLRLLSLPARHTADVFR*ELLQQG Trigger: ACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGC...TGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR TCA 90 bp | CTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTGCAGCTTAAAACCTTGTaGCTGCACGCTTTTGATGTT | + |
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Preference number: 4 (lower is better) Translates to: LGWGSFSGCCPSPPATQLQLKTL*LHAFDV Trigger: AACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTG...CAGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | CCTCCCCGCCCGCCACACAGCTGTGGCTGTGCACAGACAGAAAAGCATTTGGTCGGTCTGATTTTCCTCTaGCCGCCAATGTCCCATACA | + |
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Preference number: 4 (lower is better) Translates to: PPRPPHSCGCAQTEKHLVGLIFL*PPMSHT Trigger: TGTATGGGACATTGGCGGGCAGAGGAAAATCAGACC...GACCAAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGTGGCGGGCGGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR TCA 90 bp | AGTGTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCCAGCTTAAAACCTTGTaGCTGCACGCTTTTGATGTT | + |
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Preference number: 4 (lower is better) Translates to: SVSRADSSSRLQRHHPPAQLKTL*LHAFDV Trigger: AACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTG...GGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAACACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | AGCATTTGGTCAGAAAGCAGCAACCCAGTGTTTCTAGGGCTGACTCTAGCTCCCTGCAGACCCAGTTCATaGCATCCTGGACGCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: SIWSESSNPVFLGLTLAPCRPSS*HPGRPR Trigger: GCGAGGGCGTCCAGGATGGCATGAACTGGGTCTGCA...GGGAGCTAGAGTCAGCCCTAGAAACACTGGGTTGCTGCTTTCTGACCAAATGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS-3UTR CCA 90 bp | CCTCCCCGCCCGCCACACAGCTGTGGCTGTGCACAGACAGAAAAGCATTTGGTCAGGATTCGCACCTCCTaGTCTGGTGCACTTTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: PPRPPHSCGCAQTEKHLVRIRTS*SGALFN Trigger: ATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCT...GACCAAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGTGGCGGGCGGGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | ACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCTCCGTTTTATTTCTTCCACCTCCTGGTCTGGTaGACTTTTCAATTTGCGCAA | + |
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Preference number: 4 (lower is better) Translates to: TLAPGSSATIRLPPFYFFHLLVW*TFQFAQ Trigger: TTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTG...GAAGAAATAAAACGGAGGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS-3UTR CCA 90 bp | TCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTCGCACCTCCTGGTCTaGTGCACTTTTCAATTTGCG | + |
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Preference number: 4 (lower is better) Translates to: SSSRLQRHHPPASVLFLLSHLLV*CTFQFA Trigger: CGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGA...AAGAAGAAATAAAACGGAGGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS-3UTR CCA 90 bp | CTCCCCGCCCGCCACACAGCTGTGGCTGTGCACAGACAGAAAAGCATTTGGTCATGTGTAGGTGTGATGTaGCTGATGTCTTCAGATGCG | + |
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Preference number: 4 (lower is better) Translates to: LPARHTAVAVHRQKSIWSCVGVM*LMSSDA Trigger: CGCATCTGAAGACATCAGCCACATCACACCTACACA...TGACCAAATGCTTTTCTGTCTGTGCACAGCCACAGCTGTGTGGCGGGCGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | AGCATTTGGTCAGAAAGCAGCAACCCAGTGTTTCTAGGGCTGACTCTAGCTCCCCACCTCCTGGTCTGGTaGACTTTTCAATTTGCGCAA | + |
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Preference number: 4 (lower is better) Translates to: SIWSESSNPVFLGLTLAPHLLVW*TFQFAQ Trigger: TTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTG...GGGAGCTAGAGTCAGCCCTAGAAACACTGGGTTGCTGCTTTCTGACCAAATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR GCA 90 bp | AGCATTTGGTCAGAAAGCAGCAACCCAGTGTTTCTAGGGCTGACTCTAGCTCCCGCTGATGTCTTCAGATaGGAGTTGCTTCAGCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SIWSESSNPVFLGLTLAPADVFR*ELLQQG Trigger: ACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGC...GGGAGCTAGAGTCAGCCCTAGAAACACTGGGTTGCTGCTTTCTGACCAAATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| 3UTR CAA 72 bp | ACCATCCGCCTGCCTCCGTTTTATTTCTTCTTTGCGTaGACATTCTTGCAGACCCAGTTCATGCCATCCACA | + |
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Preference number: 4 (lower is better) Translates to: TIRLPPFYFFFA*TFLQTQFMPST Trigger: TGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAAAACGGAGGCAGGCGGATGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS-3UTR TCA 90 bp | TTATTTCTTCTTTGCGTTGACATTCTTGCAGACCCAGTTCATGCCATCCACACGTTCTCCAGTATGGTCTaGTTTTCCTCTGCCCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LFLLCVDILADPVHAIHTFSSMV*FSSARQ Trigger: TTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAA...CGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS-3UTR TCA 90 bp | CTTTATTTGAAAAACGATACCGAGCCTCTGAGATCAGTTAAAATCTACTGCTGGTTCTCCAGTATGGTCTaGTTTTCCTCTGCCCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LYLKNDTEPLRSVKIYCWFSSMV*FSSARQ Trigger: TTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAA...CCAGCAGTAGATTTTAACTGATCTCAGAGGCTCGGTATCGTTTTTCAAATAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS TCA 90 bp | CACACAGCGCTGCGACACGTCCTGGACGCCCTCGCCTGTGAGCGCTaGACAGGACTGGATCTGCCAGACGCGGTCCCGGATGGTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: HTALRHVLDALACER*TGLDLPDAVPDGVE Trigger: CTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGACGTGTCGCAGCGCTGTGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS TCA 90 bp | ACTGGTCCACACAGCGCTGCGACACGTCCTGGACGCCCTCGCCTGTaGGCGCTGAACAGGACTGGATCTGCCAGACGCGGTCCCGGATGG | + |
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Preference number: 5 (lower is better) Translates to: TGPHSAATRPGRPRL*ALNRTGSARRGPGW Trigger: CCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGACGTGTCGCAGCGCTGTGTGGACCAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS TCA 90 bp | GCAGACCCAGTTCATGCCATCCTGGACGCCCTCGCCTGTGAGCGCTaGACAGGACTGGATCTGCCAGACGCGGTCCCGGATGGTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: ADPVHAILDALACER*TGLDLPDAVPDGVE Trigger: CTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGATGGCATGAACTGGGTCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS CCA 90 bp | AGCGCTGAACAGGACTGGATCTGCCAGACGCGGTCCCGGATGGTGTaGAGGTTTAGCCCTTCTGCGATCTCGGAGGCTGGGGCTGCCGTG | + |
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Preference number: 5 (lower is better) Translates to: SAEQDWICQTRSRMV*RFSPSAISEAGAAV Trigger: CACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 90 bp | TGCGACACGTCCTGGACGCCCTCGCCTGTGAGCGCTGAACAGGACTaGATCTGCCAGACGCGGTCCCGGATGGTGTGGAGGTTTAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: CDTSWTPSPVSAEQD*ICQTRSRMVWRFSP Trigger: AGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGACGTGTCGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS-3UTR CAA 90 bp | GTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCTCCGTAGTCTTGCCCGCGTaGTCCAAGCCCAGGAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: VSRADSSSRLQRHHPPASVVLPA*SKPRSR Trigger: CCTACTCCTGGGCTTGGACAACGCGGGCAAGACTAC...GGAGGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CAA 90 bp | AGTGTTTCTAGGGCTGACTCTAGCTCCCGGCTCCAGCGCCACCATCCGCCTGCCGTAGTCTTGCCCGCGTaGTCCAAGCCCAGGAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: SVSRADSSSRLQRHHPPAVVLPA*SKPRSR Trigger: CCTACTCCTGGGCTTGGACAACGCGGGCAAGACTAC...GGCAGGCGGATGGTGGCGCTGGAGCCGGGAGCTAGAGTCAGCCCTAGAAACACT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 90 bp | TTCATGCCATCCTGGACGCCCTCGCCTGTGAGCGCTGAACAGGACTaGATCTGCCAGACGCGGTCCCGGATGGTGTGGAGGTTTAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: FMPSWTPSPVSAEQD*ICQTRSRMVWRFSP Trigger: AGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGATGGCATGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS GCA 90 bp | AGCCCTTCTGCGATCTCGGAGGCTGGGGCTGCCGTGAGCAGGTCCTaGTTGTTAGCAAAGATGAGCACGGGCACACAACTCAGCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SPSAISEAGAAVSRS*LLAKMSTGTQLSFS Trigger: AGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CAA 90 bp | CTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACAGCTGGGTGCACTTTTCAATTaGCGCAAAATAGAGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: LGWGSFSGCCPSPPATQLGALFN*RKIESK Trigger: CTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACC...CAGCTGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CAA 90 bp | ACTGCTGGGATGGGGATCTTTCTCAGGCTGCTGTCCCTCCCCGCCCGCCACACATATTTCTTCTTTGCGTaGACATTCTTGCAGACCCAG | + |
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Preference number: 5 (lower is better) Translates to: TAGMGIFLRLLSLPARHTYFFFA*TFLQTQ Trigger: CTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATA...TGTGTGGCGGGCGGGGAGGGACAGCAGCCTGAGAAAGATCCCCATCCCAGCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS CCA 90 bp | GTCTTGCCCGCGTTGTCCAAGCCCAGGAGTAGGATTCGCACCTCCTaGTCTGGTGCACTTTTCAATTTGCGCAAAATAGAGAGCAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: VLPALSKPRSRIRTS*SGALFNLRKIESKP Trigger: GGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS GCA 90 bp | AATCCCTGTGTAGGTGTGATGTGGCTGATGTCTTCAGATGCGAGTTaGTTCAGCAAGGTAGTCTTGCCCGCGTTGTCCAAGCCCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: NPCVGVMWLMSSDAS*FSKVVLPALSKPRS Trigger: ACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS GCA 90 bp | GATGTTAAATCCCTGTGTAGGTGTGATGTGGCTGATGTCTTCAGATaGGAGTTGCTTCAGCAAGGTAGTCTTGCCCGCGTTGTCCAAGCC | + |
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Preference number: 5 (lower is better) Translates to: DVKSLCRCDVADVFR*ELLQQGSLARVVQA Trigger: GGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGATTTAACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS GCA 90 bp | CTCTGCCCGCCAATGTCCCATACATTCAGCTTAAAACCTTGTGACTaGACGCTTTTGATGTTAAATCCCTGTGTAGGTGTGATGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LCPPMSHTFSLKPCD*TLLMLNPCVGVMWL Trigger: CAGCCACATCACACCTACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 90 bp | TGTGACTGCACGCTTTTGATGTTAAATCCCTGTGTAGGTGTGATGTaGCTGATGTCTTCAGATGCGAGTTGCTTCAGCAAGGTAGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: CDCTLLMLNPCVGVM*LMSSDASCFSKVVL Trigger: CAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGATTTAACATCAAAAGCGTGCAGTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS-3UTR CAA 90 bp | TTCTTTGCGTTGACATTCTTGCAGACCCAGTTCATGCCATCCACACGGCAGAGAGGTGCACTTTTCAATTaGCGCAAAATAGAGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: FFALTFLQTQFMPSTRQRGALFN*RKIESK Trigger: CTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACC...TCTCTGCCGTGTGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS TCA 90 bp | TTTCCTCTGCCCGCCAATGTCCCATACATTCAGCTTAAAACCTTGTaGCTGCACGCTTTTGATGTTAAATCCCTGTGTAGGTGTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: FPLPANVPYIQLKTL*LHAFDVKSLCRCDV Trigger: CACATCACACCTACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS TCA 72 bp | CTGCGACACGTCCTGGACGCCCTCGCCTGTGAGCGCTaGACAGGACTGGATCTGCCAGACGCGGTCCCGGAT | + |
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Preference number: 6 (lower is better) Translates to: LRHVLDALACER*TGLDLPDAVPD Trigger: ATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGACGTGTCGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS TCA 72 bp | CACAGCGCTGCGACACGTCCTGGACGCCCTCGCCTGTaGGCGCTGAACAGGACTGGATCTGCCAGACGCGGT | + |
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Preference number: 6 (lower is better) Translates to: HSAATRPGRPRL*ALNRTGSARRG Trigger: ACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGACGTGTCGCAGCGCTGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236255.2 |
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| CDS CCA 72 bp | TCCTGGACGCCCTCGCCTGTGAGCGCTGAACAGGACTaGATCTGCCAGACGCGGTCCCGGATGGTGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SWTPSPVSAEQD*ICQTRSRMVWR Trigger: CCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS TCA 72 bp | GTTCATGCCATCCTGGACGCCCTCGCCTGTGAGCGCTaGACAGGACTGGATCTGCCAGACGCGGTCCCGGAT | + |
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Preference number: 6 (lower is better) Translates to: VHAILDALACER*TGLDLPDAVPD Trigger: ATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGATGGCATGAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS CCA 72 bp | CAGGACTGGATCTGCCAGACGCGGTCCCGGATGGTGTaGAGGTTTAGCCCTTCTGCGATCTCGGAGGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: QDWICQTRSRMV*RFSPSAISEAG Trigger: CCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS TCA 72 bp | AGACCCAGTTCATGCCATCCTGGACGCCCTCGCCTGTaGGCGCTGAACAGGACTGGATCTGCCAGACGCGGT | + |
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Preference number: 6 (lower is better) Translates to: RPSSCHPGRPRL*ALNRTGSARRG Trigger: ACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGATGGCATGAACTGGGTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS CCA 72 bp | CTGAACAGGACTGGATCTGCCAGACGCGGTCCCGGATaGTGTGGAGGTTTAGCCCTTCTGCGATCTCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LNRTGSARRGPG*CGGLALLRSRR Trigger: CCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 72 bp | GCGTTGACATTCTTGCAGACCCAGTTCATGCCATCCTaGACGCCCTCGCCTGTGAGCGCTGAACAGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: ALTFLQTQFMPS*TPSPVSAEQDW Trigger: CCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026009.10 |
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| CDS CAA 90 bp | ATGTCTTCAGATGCGAGTTGCTTCAGCAAGGTAGTCTTGCCCGCGTaGTCCAAGCCCAGGAGTAGGATTCGCACCTCCTGGTCTGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: MSSDASCFSKVVLPA*SKPRSRIRTSWSGA Trigger: TGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CAA 90 bp | ATGTGGCTGATGTCTTCAGATGCGAGTTGCTTCAGCAAGGTAGTCTaGCCCGCGTTGTCCAAGCCCAGGAGTAGGATTCGCACCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: MWLMSSDASCFSKVV*PALSKPRSRIRTSW Trigger: CCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CAA 72 bp | ATGTCTTCAGATGCGAGTTGCTTCAGCAAGGTAGTCTaGCCCGCGTTGTCCAAGCCCAGGAGTAGGATTCGC | + |
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Preference number: 6 (lower is better) Translates to: MSSDASCFSKVV*PALSKPRSRIR Trigger: GCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CAA 90 bp | AAATCCCTGTGTAGGTGTGATGTGGCTGATGTCTTCAGATGCGAGTaGCTTCAGCAAGGTAGTCTTGCCCGCGTTGTCCAAGCCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: KSLCRCDVADVFRCE*LQQGSLARVVQAQE Trigger: CTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS GCA 72 bp | TCCCTGTGTAGGTGTGATGTGGCTGATGTCTTCAGATaGGAGTTGCTTCAGCAAGGTAGTCTTGCCCGCGTT | + |
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Preference number: 6 (lower is better) Translates to: SLCRCDVADVFR*ELLQQGSLARV Trigger: AACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 72 bp | GCGTTGTCCAAGCCCAGGAGTAGGATTCGCACCTCCTaGTCTGGTGCACTTTTCAATTTGCGCAAAATAGAG | + |
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Preference number: 6 (lower is better) Translates to: ALSKPRSRIRTS*SGALFNLRKIE Trigger: CTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS TCA 72 bp | CCCGCCAATGTCCCATACATTCAGCTTAAAACCTTGTaGCTGCACGCTTTTGATGTTAAATCCCTGTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: PANVPYIQLKTL*LHAFDVKSLCR Trigger: CCTACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS CCA 72 bp | ACGCTTTTGATGTTAAATCCCTGTGTAGGTGTGATGTaGCTGATGTCTTCAGATGCGAGTTGCTTCAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TLLMLNPCVGVM*LMSSDASCFSK Trigger: CTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGGGATTTAACATCAAAAGCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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| CDS GCA 72 bp | CCAATGTCCCATACATTCAGCTTAAAACCTTGTGACTaGACGCTTTTGATGTTAAATCCCTGTGTAGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PMSHTFSLKPCD*TLLMLNPCVGV Trigger: CACACCTACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026009.10 ENSMUST00000236255.2 |
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