Pregenerated sensors for ARL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024944Ensembl transcript IDs: ENSMUST00000025893.7
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGCAGCAGGTCATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTaGTGCTCATCCCTCTGGCTGGTGTCTGATGAGGACAGGGACCTG | + |
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Preference number: 1 (lower is better) Translates to: AAAGHGGVGSVSLAS*CSSLWLVSDEDRDL Trigger: CAGGTCCCTGTCCTCATCAGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATGACCTGCTGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 90 bp | CTTTATTCTCACTGCTGGACCGAGGCGAGGCGACACCTAGGACCCTaGCAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTTCCTTTTGGC | + |
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Preference number: 1 (lower is better) Translates to: LYSHCWTEARRHLGP*QQQVVPPSPAFPFG Trigger: GCCAAAAGGAAAGGCTGGGCTGGGAGGGACTACCTGCTGCTGCCAGGGTCCTAGGTGTCGCCTCGCCTCGGTCCAGCAGTGAGAATAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 90 bp | GGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTGGTGCTCATCCCTCTaGCTGGTGTCTGATGAGGACAGGGACCTGGGGACACTGAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: GGVGSVSLASWCSSL*LVSDEDRDLGTLKK Trigger: CTTCTTCAGTGTCCCCAGGTCCCTGTCCTCATCAGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 90 bp | CACTTTGGGAGACAGGGTGACAGCCCTCACCCGGGGGAGCAGCAATaGGCAGTAATAGCAGCAGCAGGTCATGGTGGGGTTGGGAGTGTT | + |
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Preference number: 1 (lower is better) Translates to: HFGRQGDSPHPGEQQ*AVIAAAGHGGVGSV Trigger: AACACTCCCAACCCCACCATGACCTGCTGCTGCTATTACTGCCCATTGCTGCTCCCCCGGGTGAGGGCTGTCACCCTGTCTCCCAAAGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR-3UTR GCA 90 bp | GCGAGGCGACACCTAGGACCCTGGCAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTTTGGCATGGCAGCTaGAGGCCACTTTGGGAGACA | + |
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Preference number: 2 (lower is better) Translates to: ARRHLGPWQQQVVPPSPAFWHGS*RPLWET Trigger: TGTCTCCCAAAGTGGCCTGCAGCTGCCATGCCAAAA...GGCTGGGCTGGGAGGGACTACCTGCTGCTGCCAGGGTCCTAGGTGTCGCCTCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR-3UTR CCA 90 bp | CAGGTAGTCCCTCCCAGCCCAGCCTTTCCTTTTGGCATGGCAGCTGCAGGCCACGTTAGTCTGGCCAGCTaGTGCTCATCCCTCTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: QVVPPSPAFPFGMAAAGHVSLAS*CSSLWL Trigger: CAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAAC...GTGGCCTGCAGCTGCCATGCCAAAAGGAAAGGCTGGGCTGGGAGGGACTACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 72 bp | CACTGCTGGACCGAGGCGAGGCGACACCTAGGACCCTaGCAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: HCWTEARRHLGP*QQQVVPPSPAF Trigger: AAAGGCTGGGCTGGGAGGGACTACCTGCTGCTGCCAGGGTCCTAGGTGTCGCCTCGCCTCGGTCCAGCAGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR TCA 72 bp | TGGCATGGCAGCTGCAGGCCACTTTGGGAGACAGGGTaGCAGCCCTCACCCGGGGGAGCAGCAATGGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: WHGSCRPLWETG*QPSPGGAAMGS Trigger: ACTGCCCATTGCTGCTCCCCCGGGTGAGGGCTGTCACCCTGTCTCCCAAAGTGGCCTGCAGCTGCCATGCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 72 bp | CAGCAGCAGGTCATGGTGGGGTTGGGAGTGTTAGTCTaGCCAGCTGGTGCTCATCCCTCTGGCTGGTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: QQQVMVGLGVLV*PAGAHPSGWCL Trigger: CAGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATGACCTGCTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 72 bp | AGACAGGGTGACAGCCCTCACCCGGGGGAGCAGCAATaGGCAGTAATAGCAGCAGCAGGTCATGGTGGGGTT | + |
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Preference number: 3 (lower is better) Translates to: RQGDSPHPGEQQ*AVIAAAGHGGV Trigger: AACCCCACCATGACCTGCTGCTGCTATTACTGCCCATTGCTGCTCCCCCGGGTGAGGGCTGTCACCCTGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR GCA 72 bp | CATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTGGTaGTCATCCCTCTGGCTGGTGTCTGATGAGGACAGG | + |
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Preference number: 3 (lower is better) Translates to: HGGVGSVSLASW*SSLWLVSDEDR Trigger: CCTGTCCTCATCAGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| 3UTR CCA 72 bp | GGTCATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTaGTGCTCATCCCTCTGGCTGGTGTCTGATGAGGAC | + |
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Preference number: 3 (lower is better) Translates to: GHGGVGSVSLAS*CSSLWLVSDED Trigger: GTCCTCATCAGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR GCA 90 bp | GCGAGGCGACACCTAGGACCCTGGCAGCAGCAGGTAGTCCCTCCCAGCCCAGCCGCTGACAGTCCTGCATaGGCTGGCGGTCGGCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: ARRHLGPWQQQVVPPSPAADSPA*AGGRRC Trigger: ACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGC...GGCTGGGCTGGGAGGGACTACCTGCTGCTGCCAGGGTCCTAGGTGTCGCCTCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CCA 90 bp | CCCGGGGGAGCAGCAATGGGCAGTAATAGCAGCAGCAGGTCATGGTGGGGTTGGCAGTCCTGCATGCGCTaGCGGTCGGCGCTGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: PGGAAMGSNSSSRSWWGWQSCMR*RSALST Trigger: GGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTG...CCAACCCCACCATGACCTGCTGCTGCTATTACTGCCCATTGCTGCTCCCCCGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CCA 90 bp | GAGGCGACACCTAGGACCCTGGCAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTTGGATGCGCCAGTGGTaGCTGCGGATGGAGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: EATPRTLAAAGSPSQPSLWMRQW*LRMESS Trigger: GCTGGACTCCATCCGCAGCCACCACTGGCGCATCCA...AAGGCTGGGCTGGGAGGGACTACCTGCTGCTGCCAGGGTCCTAGGTGTCGCCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CCA 90 bp | CCCGGGGGAGCAGCAATGGGCAGTAATAGCAGCAGCAGGTCATGGTGGGGTTGGCCCTGGATGCGCCAGTaGTGGCTGCGGATGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PGGAAMGSNSSSRSWWGWPWMRQ*WLRMES Trigger: GGACTCCATCCGCAGCCACCACTGGCGCATCCAGGG...CCAACCCCACCATGACCTGCTGCTGCTATTACTGCCCATTGCTGCTCCCCCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR TCA 90 bp | GCAGCAGGTCATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTGGTGCTCATCCCTCTGCAGCTCTCGCTaGCAGTCCTGCATGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: AAGHGGVGSVSLASWCSSLCSSR*QSCMRW Trigger: CCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAG...GGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATGACCTGCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR GCA 90 bp | GCAGGTAGTCCCTCCCAGCCCAGCCTTTCCTTTTGGCATGGCAGCTGCAGGCCACAAGGAGCCAGTCGATaGCAGGCAGCAGGTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: AGSPSQPSLSFWHGSCRPQGASR*QAAGLP Trigger: GGGAAGACCTGCTGCCTGGCATCGACTGGCTCCTTG...TGGCCTGCAGCTGCCATGCCAAAAGGAAAGGCTGGGCTGGGAGGGACTACCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR TCA 90 bp | GCAGTAATAGCAGCAGCAGGTCATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCGCAGGTCTTCCCCTGTaGCAGCACTGCAGCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: AVIAAAGHGGVGSVSLASAGLPL*QHCSPG Trigger: TCCAGGGCTGCAGTGCTGTCACAGGGGAAGACCTGC...GCTGGCCAGACTAACACTCCCAACCCCACCATGACCTGCTGCTGCTATTACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR GCA 90 bp | CAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTTCCTTTTGGCATGGCAGCTGCAAAAGATGAGGAGGGTTaGTCCAGCCAGGCGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QQQVVPPSPAFPFGMAAAKDEEG*SSQALL Trigger: GAGGAGCGCCTGGCTGGAGCAACCCTCCTCATCTTT...TGCAGCTGCCATGCCAAAAGGAAAGGCTGGGCTGGGAGGGACTACCTGCTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR TCA 90 bp | TTTGGGAGACAGGGTGACAGCCCTCACCCGGGGGAGCAGCAATGGGCAGTAATAGCTTGTTGGCAAAGATaGGGAGGGTTGCTCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: FGRQGDSPHPGEQQWAVIACWQR*GGLLQP Trigger: TGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGC...TATTACTGCCCATTGCTGCTCCCCCGGGTGAGGGCTGTCACCCTGTCTCCCAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR GCA 90 bp | CAGCAGCAGGTAGTCCCTCCCAGCCCAGCCTTTCCTTTTGGCATGGCAGCTGCAAGCATTACAGGACAGTaGTCCAGGCAGGTCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: QQQVVPPSPAFPFGMAAASITGQ*SRQVLL Trigger: AAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCT...TGCAGCTGCCATGCCAAAAGGAAAGGCTGGGCTGGGAGGGACTACCTGCTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR GCA 90 bp | TTCCTTTTGGCATGGCAGCTGCAGGCCACTTTGGGAGACAGGGTGACAGCCCTCAGCTTGAATCCGCGGTaGTCCAGGGTCTTGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: FLLAWQLQATLGDRVTALSLNPR*SRVLML Trigger: CAACATCAAGACCCTGGAGCACCGCGGATTCAAGCT...GAGGGCTGTCACCCTGTCTCCCAAAGTGGCCTGCAGCTGCCATGCCAAAAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS TCA 90 bp | GCTCCAGCCAGGCGCTCCTCCACCAGTAGGCTCTGCAGCTCTCGCTaGCAGTCCTGCATGCGCTGGCGGTCGGCGCTGTCCACCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: APARRSSTSRLCSSR*QSCMRWRSALSTTQ Trigger: CTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAGCGCCTGGCTGGAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS TCA 90 bp | GACAGTCCTGCATGCGCTGGCGGTCGGCGCTGTCCACCACCCAGATaGGGCCATCCGTGCTCTCAAAGTAGTTCCTCCAGTAGGAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: DSPACAGGRRCPPPR*GHPCSQSSSSSRSA Trigger: TGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CAA 90 bp | AGCCCTCACCCGGGGGAGCAGCAATGGGCAGTAATAGCAGCAGCAGGTCATGGTCGGTGCTCCAGGGTCTaGATGTTGAAGCCCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SPHPGEQQWAVIAAAGHGRCSRV*MLKPSV Trigger: GACACTGGGCTTCAACATCAAGACCCTGGAGCACCG...ACCATGACCTGCTGCTGCTATTACTGCCCATTGCTGCTCCCCCGGGTGAGGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CAA 90 bp | TTCCTTTTGGCATGGCAGCTGCAGGCCACTTTGGGAGACAGGGTGACAGCCCTCTCCCAGATGTTCAGCTaGAATCCGCGGTGCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: FLLAWQLQATLGDRVTALSQMFS*NPRCSR Trigger: CCTGGAGCACCGCGGATTCAAGCTGAACATCTGGGA...GAGGGCTGTCACCCTGTCTCCCAAAGTGGCCTGCAGCTGCCATGCCAAAAGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CAA 90 bp | GCAGCAGCAGGTCATGGTGGGGTTGGGAGTGTTAGTCTGGCCAGCTGGTGCTCATTGAGGATGGTTGTTTaGCCAGCGTTGTCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: AAAGHGGVGSVSLASWCSLRMVV*PALSKP Trigger: TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAA...TGAGCACCAGCTGGCCAGACTAACACTCCCAACCCCACCATGACCTGCTGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CAA 90 bp | GGGGTTGGGAGTGTTAGTCTGGCCAGCTGGTGCTCATCCCTCTGGCTGGTGTCTTCCACGTCTTCTCCATaGAACTTCTTGAGGATGGTT | + |
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Preference number: 5 (lower is better) Translates to: GVGSVSLASWCSSLWLVSSTSSP*NFLRMV Trigger: AACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGA...AGACACCAGCCAGAGGGATGAGCACCAGCTGGCCAGACTAACACTCCCAACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS-3UTR CAA 90 bp | TTTGGGAGACAGGGTGACAGCCCTCACCCGGGGGAGCAGCAATGGGCAGTAATATCTCCATTGAACTTCTaGAGGATGGTTGTTTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: FGRQGDSPHPGEQQWAVISPLNF*RMVVLP Trigger: TGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGA...TATTACTGCCCATTGCTGCTCCCCCGGGTGAGGGCTGTCACCCTGTCTCCCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 72 bp | CAGATGTTCAGCTTGAATCCGCGGTGCTCCAGGGTCTaGATGTTGAAGCCCAGTGTCGGGGAGATGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: QMFSLNPRCSRV*MLKPSVGEMVS Trigger: GGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGGATTCAAGCTGAACATCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 90 bp | TCCCAGATGTTCAGCTTGAATCCGCGGTGCTCCAGGGTCTTGATGTaGAAGCCCAGTGTCGGGGAGATGGTGTCCACGTCTTCTCCATTG | + |
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Preference number: 6 (lower is better) Translates to: SQMFSLNPRCSRVLM*KPSVGEMVSTSSPL Trigger: CAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGGATTCAAGCTGAACATCTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 72 bp | CCATTGAACTTCTTGAGGATGGTTGTTTTGCCAGCGTaGTCCAAGCCAAGCATGAGCAGCCGCAGCTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: PLNFLRMVVLPA*SKPSMSSRSSR Trigger: GCGAGAGCTGCGGCTGCTCATGCTTGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 90 bp | ATGGTGTCCACGTCTTCTCCATTGAACTTCTTGAGGATGGTTGTTTaGCCAGCGTTGTCCAAGCCAAGCATGAGCAGCCGCAGCTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: MVSTSSPLNFLRMVV*PALSKPSMSSRSSR Trigger: GCGAGAGCTGCGGCTGCTCATGCTTGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 90 bp | CCCAGTGTCGGGGAGATGGTGTCCACGTCTTCTCCATTGAACTTCTaGAGGATGGTTGTTTTGCCAGCGTTGTCCAAGCCAAGCATGAGC | + |
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Preference number: 6 (lower is better) Translates to: PSVGEMVSTSSPLNF*RMVVLPALSKPSMS Trigger: GCTCATGCTTGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 72 bp | CCCAGTGTCGGGGAGATGGTGTCCACGTCTTCTCCATaGAACTTCTTGAGGATGGTTGTTTTGCCAGCGTTG | + |
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Preference number: 6 (lower is better) Translates to: PSVGEMVSTSSP*NFLRMVVLPAL Trigger: CAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 90 bp | ATGTTGAAGCCCAGTGTCGGGGAGATGGTGTCCACGTCTTCTCCATaGAACTTCTTGAGGATGGTTGTTTTGCCAGCGTTGTCCAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: MLKPSVGEMVSTSSP*NFLRMVVLPALSKP Trigger: TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 72 bp | ACGTCTTCTCCATTGAACTTCTTGAGGATGGTTGTTTaGCCAGCGTTGTCCAAGCCAAGCATGAGCAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: TSSPLNFLRMVV*PALSKPSMSSR Trigger: GCGGCTGCTCATGCTTGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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| CDS CAA 72 bp | GGGGAGATGGTGTCCACGTCTTCTCCATTGAACTTCTaGAGGATGGTTGTTTTGCCAGCGTTGTCCAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GEMVSTSSPLNF*RMVVLPALSKP Trigger: TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025893.7 |
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