Pregenerated sensors for ARL16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057594

Ensembl transcript IDs: ENSMUST00000076921.7

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CTTGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTaGGTGGCCTGCTCCTATCAAACACCTCAGGCTCTCATGCATTTG	+
Preference number: 1 (lower is better) Translates to: LVYWSQHSPHHLQIH*VACSYQTPQALMHL Trigger: CAAATGCATGAGAGCCTGAGGTGTTTGATAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
3UTR TCA 90 bp	GAAGACACCTGCAGTTTGTTCTGTCTTGGGACCATTGTTCAGAAGTaGGATGACAGTGGTGTTTGTAAGTGTATGCTTGTTTACTGGTCA	+
Preference number: 1 (lower is better) Translates to: EDTCSLFCLGTIVQK*DDSGVCKCMLVYWS Trigger: TGACCAGTAAACAAGCATACACTTACAAACACCACTGTCATCTCACTTCTGAACAATGGTCCCAAGACAGAACAAACTGCAGGTGTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
3UTR-3UTR GCA 90 bp	GTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTCCTATCAAGGCTCTCATGCATTTaGCTCCTAGGCACTGGGTGG	+
Preference number: 2 (lower is better) Translates to: VTAQPPSLADTLGGLLLSRLSCI*LLGTGW Trigger: CCACCCAGTGCCTAGGAGGCAAATGCATGAGAGCCT...TGATAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
3UTR-3UTR CCA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGTTGCCTCCTAGGCACTaGGTGGGGTCAGCCATACTT	+
Preference number: 2 (lower is better) Translates to: CLLVTAQPPSLADTLGGLLPPRH*VGSAIL Trigger: AAGTATGGCTGACCCCACCCAGTGCCTAGGAGGCAA...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
3UTR GCA 72 bp	CCTGCTCCTATCAAACACCTCAGGCTCTCATGCATTTaGCTCCTAGGCACTGGGTGGGGTCAGCCATACTTC	+
Preference number: 3 (lower is better) Translates to: PAPIKHLRLSCI*LLGTGWGQPYF Trigger: GAAGTATGGCTGACCCCACCCAGTGCCTAGGAGGCAAATGCATGAGAGCCTGAGGTGTTTGATAGGAGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR GCA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGACCAGATGGGGCTCATaGATCCCCCGAGCTCTCGGA	+
Preference number: 4 (lower is better) Translates to: CLLVTAQPPSLADTLGGLTRWGS*IPRALG Trigger: TCCGAGAGCTCGGGGGATGCATGAGCCCCATCTGGT...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR TCA 90 bp	GTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTCCTATCACTGCTGTGCCTGTGTTaGTTCTGGAGCCAGAGCAAT	+
Preference number: 4 (lower is better) Translates to: VTAQPPSLADTLGGLLLSLLCLC*FWSQSN Trigger: ATTGCTCTGGCTCCAGAATCAACACAGGCACAGCAG...TGATAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR GCA 90 bp	GTATGCTTGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGCTCCCAGGTCGCCTTTaGCATCTCCGGAGCTCAGCT	+
Preference number: 4 (lower is better) Translates to: VCLFTGHSTAPITCRYTGLPGRL*HLRSSA Trigger: AGCTGAGCTCCGGAGATGGCAAAGGCGACCTGGGAG...CCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACAAGCATAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR GCA 90 bp	GCTTGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCCAGAGCAATACTGTTaGCAAGCCAGTGCCATTCCT	+
Preference number: 4 (lower is better) Translates to: ACLLVTAQPPSLADTLGGPEQYC*QASAIP Trigger: AGGAATGGCACTGGCTTGGCAACAGTATTGCTCTGG...GCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR TCA 90 bp	GTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTCCTATCATGGAAGCCTCATCAATaGCTTCATTTCCTCCATGGT	+
Preference number: 4 (lower is better) Translates to: VTAQPPSLADTLGGLLLSWKPHQ*LHFLHG Trigger: ACCATGGAGGAAATGAAGTCATTGATGAGGCTTCCA...TGATAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR GCA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTGTTGCCAAGCCAGTaGCATTCCTGGCACTTATTT	+
Preference number: 4 (lower is better) Translates to: CLLVTAQPPSLADTLGGLLLPSQ*HSWHLF Trigger: AAATAAGTGCCAGGAATGGCACTGGCTTGGCAACAG...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR GCA 90 bp	GTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTCCTATCATTTTTCAAGTTCTTCTaGAGAAAGGAGACCCAGGAG	+
Preference number: 4 (lower is better) Translates to: VTAQPPSLADTLGGLLLSFFKFF*RKETQE Trigger: CTCCTGGGTCTCCTTTCTGCAGAAGAACTTGAAAAA...TGATAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR TCA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGTTATTTCTACTGCGGTaGTGTTTTGCTTGGCACAAG	+
Preference number: 4 (lower is better) Translates to: CLLVTAQPPSLADTLGGLLFLLR*CFAWHK Trigger: CTTGTGCCAAGCAAAACATCACCGCAGTAGAAATAA...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
3UTR CAA 72 bp	AGAAGTGAGATGACAGTGGTGTTTGTAAGTGTATGCTaGTTTACTGGTCACAGCACAGCCCCCATCACTTGC	+
Preference number: 4 (lower is better) Translates to: RSEMTVVFVSVC*FTGHSTAPITC Trigger: GCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACAAGCATACACTTACAAACACCACTGTCATCTCACTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS GCA 90 bp	TGCCCACCGTGGGCCGCGTCGGTGGGGGCTCTCCCAGGTCGCCTTTaGCATCTCCGGAGCTCAGCTTCTGAAGGCGTTTCACCAGCAGGG	+
Preference number: 5 (lower is better) Translates to: CPPWAASVGALPGRL*HLRSSASEGVSPAG Trigger: CCCTGCTGGTGAAACGCCTTCAGAAGCTGAGCTCCGGAGATGGCAAAGGCGACCTGGGAGAGCCCCCACCGACGCGGCCCACGGTGGGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR CAA 90 bp	TGTATGCTTGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGTCTCCCAGGTCGCCTTaGCCATCTCCGGAGCTCAGC	+
Preference number: 5 (lower is better) Translates to: CMLVYWSQHSPHHLQIHWSPRSP*PSPELS Trigger: GCTGAGCTCCGGAGATGGCAAAGGCGACCTGGGAGA...CCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACAAGCATACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR CAA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGGCCAGAGCAATACTGTaGCCAAGCCAGTGCCATTCC	+
Preference number: 5 (lower is better) Translates to: CLLVTAQPPSLADTLGGLARAIL*PSQCHS Trigger: GGAATGGCACTGGCTTGGCAACAGTATTGCTCTGGC...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR CAA 90 bp	TGTTTACTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGACTGCTGTGCCTGTGTaGATTCTGGAGCCAGAGCAA	+
Preference number: 5 (lower is better) Translates to: CLLVTAQPPSLADTLGGLTAVPV*ILEPEQ Trigger: TTGCTCTGGCTCCAGAATCAACACAGGCACAGCAGT...CAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAGTAAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS-3UTR CAA 90 bp	CTGGTCACAGCACAGCCCCCATCACTTGCAGATACACTGGGTGGCCTGCTCCTAGGTAGGTCAATTTTATaGAAGAGTATGAGGACGGAG	+
Preference number: 5 (lower is better) Translates to: LVTAQPPSLADTLGGLLLGRSIL*KSMRTE Trigger: CTCCGTCCTCATACTCTTCAATAAAATTGACCTACC...TAGGAGCAGGCCACCCAGTGTATCTGCAAGTGATGGGGGCTGTGCTGTGACCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS GCA 90 bp	TCAACTGCTGTGCCTGTGTTGATTCTGGAGCCAGAGCAATACTGTTaGCAAGCCAGTGCCATTCCTGGCACTTATTTCTACTGCGGTGAT	+
Preference number: 5 (lower is better) Translates to: STAVPVLILEPEQYC*QASAIPGTYFYCGD Trigger: ATCACCGCAGTAGAAATAAGTGCCAGGAATGGCACTGGCTTGGCAACAGTATTGCTCTGGCTCCAGAATCAACACAGGCACAGCAGTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS CCA 72 bp	GTCTGTAAGGTTGGTGCCCACCGTGGGCCGCGTCGGTaGGGGCTCTCCCAGGTCGCCTTTGCCATCTCCGGA	+
Preference number: 6 (lower is better) Translates to: VCKVGAHRGPRR*GLSQVAFAISG Trigger: TCCGGAGATGGCAAAGGCGACCTGGGAGAGCCCCCACCGACGCGGCCCACGGTGGGCACCAACCTTACAGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS GCA 72 bp	TGGGCCGCGTCGGTGGGGGCTCTCCCAGGTCGCCTTTaGCATCTCCGGAGCTCAGCTTCTGAAGGCGTTTCA	+
Preference number: 6 (lower is better) Translates to: WAASVGALPGRL*HLRSSASEGVS Trigger: TGAAACGCCTTCAGAAGCTGAGCTCCGGAGATGGCAAAGGCGACCTGGGAGAGCCCCCACCGACGCGGCCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS GCA 72 bp	GTGCCTGTGTTGATTCTGGAGCCAGAGCAATACTGTTaGCAAGCCAGTGCCATTCCTGGCACTTATTTCTAC	+
Preference number: 6 (lower is better) Translates to: VPVLILEPEQYC*QASAIPGTYFY Trigger: GTAGAAATAAGTGCCAGGAATGGCACTGGCTTGGCAACAGTATTGCTCTGGCTCCAGAATCAACACAGGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076921.7
CDS CAA 72 bp	TGTGCCTGTGTTGATTCTGGAGCCAGAGCAATACTGTaGCCAAGCCAGTGCCATTCCTGGCACTTATTTCTA	+
Preference number: 6 (lower is better) Translates to: CACVDSGARAIL*PSQCHSWHLFL Trigger: TAGAAATAAGTGCCAGGAATGGCACTGGCTTGGCAACAGTATTGCTCTGGCTCCAGAATCAACACAGGCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076921.7