Pregenerated sensors for ARL14EPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073568Ensembl transcript IDs: ENSMUST00000097580.2, ENSMUST00000234910.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGGTCTATACAATaGTTGTCTGGTCTACAGCCATCTGTTGCACCAACACGTATCCAA | + |
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Preference number: 1 (lower is better) Translates to: AACGHQLRKLRGSIQ*LSGLQPSVAPTRIQ Trigger: TTGGATACGTGTTGGTGCAACAGATGGCTGTAGACCAGACAATCATTGTATAGACCCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 90 bp | ACGCAAGCTCTGAAGAACCCAACATCGCAGGCCTCTGCAGGCACCTaGACTGATGTACGTAAGTTCACAAAAGATATACACACACACACA | + |
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Preference number: 1 (lower is better) Translates to: TQALKNPTSQASAGT*TDVRKFTKDIHTHT Trigger: TGTGTGTGTGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCGATGTTGGGTTCTTCAGAGCTTGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CCA 90 bp | TGGTCACCAGCTGAGGAAGCTGAGAGGGTCTATACAATGATTGTCTaGTCTACAGCCATCTGTTGCACCAACACGTATCCAAGAGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: WSPAEEAERVYTMIV*STAICCTNTYPRER Trigger: TCTTTCTCTTGGATACGTGTTGGTGCAACAGATGGCTGTAGACCAGACAATCATTGTATAGACCCTCTCAGCTTCCTCAGCTGGTGACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 90 bp | TCCAGATACCTGCTACCATATGTTAGAACACAGCCAGCCACGTCATaGTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATA | + |
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Preference number: 1 (lower is better) Translates to: SRYLLPYVRTQPATS*FLSAAHPYIQLVNI Trigger: TATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAGGTATCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 90 bp | TTTAAATACTTCCTTGCATTACATATCTACTGTAACTTAAAGAAGTaGTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCATCT | + |
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Preference number: 1 (lower is better) Translates to: FKYFLALHIYCNLKK*FSYMAPRPVTSISS Trigger: AGATGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTTACAGTAGATATGTAATGCAAGGAAGTATTTAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCAAGCTCTGAAGAACCCAACATCGCAGGCCTCTGCAGGCACCTGCACTGATGCTAATGAGGAAGCCTaGGTGTCCACTCTTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: TQALKNPTSQASAGTCTDANEEA*VSTLAA Trigger: GGCTGCAAGAGTGGACACTCAGGCTTCCTCATTAGC...ATCAGTGCAGGTGCCTGCAGAGGCCTGCGATGTTGGGTTCTTCAGAGCTTGCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CAA 90 bp | CGACCAGACACCCTGAGAAGGGAGAGGTGTAGCTTCAAGGCAGAGTaGAGAGTGCTGCTAATGAGGAAGCCTGAGTGTCCACTCTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: RPDTLRRERCSFKAE*RVLLMRKPECPLLQ Trigger: CTGCAAGAGTGGACACTCAGGCTTCCTCATTAGCAGCACTCTCAACTCTGCCTTGAAGCTACACCTCTCCCTTCTCAGGGTGTCTGGTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACTGAGTGTCCACTCTTaGAGCCTGTGGTCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: RPLQAPALMYVSSQKIYTLSVHS*SLWSPA Trigger: AGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAG...TGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR TCA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAAGCTAATGAGGAAGCCTaGGTGTCCACTCTTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQANEEA*VSTLAA Trigger: GGCTGCAAGAGTGGACACTCAGGCTTCCTCATTAGC...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR GCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCACTGAGTGTCCACTCTTaGAGCCTGTGGTCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: NLKKCFSYMAPRPVTSISLSVHS*SLWSPA Trigger: AGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAG...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR TCA 90 bp | CGCAGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACACACTTGCACATaGGCACAAAGAAATGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: RRPLQAPALMYVSSQKIYTHTCT*AQRNEY Trigger: GTACTCATTTCTTTGTGCTCATGTGCAAGTGTGTGT...GTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR TCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCAAGCACATACTGCTCTTaGAAAGTTTGGTGGTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: NLKKCFSYMAPRPVTSISSTYCS*KVWWFP Trigger: TGGGAACCACCAAACTTTTCAAGAGCAGTATGTGCT...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CCA 90 bp | TCGCAGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATAGATCCAGTAAGGAAATaGGTTAGTCACAGACTTTTA | + |
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Preference number: 2 (lower is better) Translates to: SQASAGTCTDVRKFTKDIDPVRK*VSHRLL Trigger: TAAAAGTCTGTGACTAACCCATTTCCTTACTGGATC...TATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CAA 90 bp | GAGAGATGGTTCAGTTATTTAAAGCACATACTGCTCTTGAAAAGTTaGGTGGTTCCCAGCACTGATTTCAAGTGGTTCATAAAAGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: ERWFSYLKHILLLKS*VVPSTDFKWFIKAS Trigger: ACTGGCTTTTATGAACCACTTGAAATCAGTGCTGGGAACCACCAAACTTTTCAAGAGCAGTATGTGCTTTAAATAACTGAACCATCTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CCA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAAGATCCAGTAAGGAAATaGGTTAGTCACAGACTTTTA | + |
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Preference number: 2 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQDPVRK*VSHRLL Trigger: TAAAAGTCTGTGACTAACCCATTTCCTTACTGGATC...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR TCA 72 bp | CAAGGCAGAGTTGAGAGTGCTGCTAATGAGGAAGCCTaGGTGTCCACTCTTGCAGCCTGTGGTCACCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QGRVESAANEEA*VSTLAACGHQL Trigger: CAGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGGCTTCCTCATTAGCAGCACTCTCAACTCTGCCTTG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | ACGCAAGCTCTGAAGAACCCAACATCGCAGGCCTCTGCAGGCACCTGCACTGATGTCTACAGCCATCTGTaGCACCAACACGTATCCAAG | + |
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Preference number: 3 (lower is better) Translates to: TQALKNPTSQASAGTCTDVYSHL*HQHVSK Trigger: CTTGGATACGTGTTGGTGCAACAGATGGCTGTAGAC...ATCAGTGCAGGTGCCTGCAGAGGCCTGCGATGTTGGGTTCTTCAGAGCTTGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGATACCTGCTACCATATGTTAGAACACAGCCAGCCACGTCATGCTTTCTGTCCTGAGTGTCCACTCTaGCAGCCTGTGGTCACCAGC | + |
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Preference number: 3 (lower is better) Translates to: PDTCYHMLEHSQPRHAFCPECPL*QPVVTS Trigger: GCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGG...ACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAGGTATCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCACCTGAGTGTCCACTCTaGCAGCCTGTGGTCACCAGC | + |
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Preference number: 3 (lower is better) Translates to: NLKKCFSYMAPRPVTSISPECPL*QPVVTS Trigger: GCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGG...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR TCA 72 bp | GGTCACCAGCTGAGGAAGCTGAGAGGGTCTATACAATaGTTGTCTGGTCTACAGCCATCTGTTGCACCAACA | + |
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Preference number: 3 (lower is better) Translates to: GHQLRKLRGSIQ*LSGLQPSVAPT Trigger: TGTTGGTGCAACAGATGGCTGTAGACCAGACAATCATTGTATAGACCCTCTCAGCTTCCTCAGCTGGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 72 bp | CTGCTACCATATGTTAGAACACAGCCAGCCACGTCATaGTTTCTGTCAGCTGCCCATCCATACATCCAACTA | + |
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Preference number: 3 (lower is better) Translates to: LLPYVRTQPATS*FLSAAHPYIQL Trigger: TAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 72 bp | CTGAAGAACCCAACATCGCAGGCCTCTGCAGGCACCTaGACTGATGTACGTAAGTTCACAAAAGATATACAC | + |
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Preference number: 3 (lower is better) Translates to: LKNPTSQASAGT*TDVRKFTKDIH Trigger: GTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCGATGTTGGGTTCTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CCA 72 bp | GCTGAGGAAGCTGAGAGGGTCTATACAATGATTGTCTaGTCTACAGCCATCTGTTGCACCAACACGTATCCA | + |
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Preference number: 3 (lower is better) Translates to: AEEAERVYTMIV*STAICCTNTYP Trigger: TGGATACGTGTTGGTGCAACAGATGGCTGTAGACCAGACAATCATTGTATAGACCCTCTCAGCTTCCTCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACAGTCTACAGCCATCTGTaGCACCAACACGTATCCAAG | + |
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Preference number: 3 (lower is better) Translates to: RPLQAPALMYVSSQKIYTVYSHL*HQHVSK Trigger: CTTGGATACGTGTTGGTGCAACAGATGGCTGTAGAC...TGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCAAGCTTCAAGGCAGAGTaGAGAGTGCTGCTAATGAGG | + |
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Preference number: 3 (lower is better) Translates to: NLKKCFSYMAPRPVTSISSFKAE*RVLLMR Trigger: CCTCATTAGCAGCACTCTCAACTCTGCCTTGAAGCT...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 72 bp | TTCCTTGCATTACATATCTACTGTAACTTAAAGAAGTaGTTTTCATACATGGCCCCCAGGCCTGTGACATCA | + |
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Preference number: 3 (lower is better) Translates to: FLALHIYCNLKK*FSYMAPRPVTS Trigger: TGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTTACAGTAGATATGTAATGCAAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCCCCAGGCCTGTGACATCAATATCATCTGGGAAATCGTTTCAAATGTAAATTTAGTACATTTGGTGTaGGAGAGATGGTTCAGTTAT | + |
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Preference number: 3 (lower is better) Translates to: GPQACDINIIWEIVSNVNLVHLV*ERWFSY Trigger: ATAACTGAACCATCTCTCCAACACCAAATGTACTAA...ATTTACATTTGAAACGATTTCCCAGATGATATTGATGTCACAGGCCTGGGGGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR GCA 72 bp | AAATTAATACAACTTGGGAAGCTAAGGCAAGAGAATTaGCATAAGTTCAAGGCCAGCCTGAGCTACAGAATA | + |
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Preference number: 3 (lower is better) Translates to: KLIQLGKLRQEN*HKFKASLSYRI Trigger: TATTCTGTAGCTCAGGCTGGCCTTGAACTTATGGCAATTCTCTTGCCTTAGCTTCCCAAGTTGTATTAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CCA 72 bp | AAATGGGGAAAATTAGTACATTTGGTGTTGGAGAGATaGTTCAGTTATTTAAAGCACATACTGCTCTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: KWGKLVHLVLER*FSYLKHILLLK Trigger: TTTCAAGAGCAGTATGTGCTTTAAATAACTGAACCATCTCTCCAACACCAAATGTACTAATTTTCCCCATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | GTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGGTCTATACACACTTGTTGGAGTTaGACTTGGGGCACGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: VSTLAACGHQLRKLRGSIHTCWS*TWGTGR Trigger: TCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTG...TATAGACCCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR TCA 90 bp | GTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGGTCTATATGCTTCTGTCCAATCTaGCTGCTTTTCTCTGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: VSTLAACGHQLRKLRGSICFCPI*LLFSGN Trigger: GTTTCCAGAGAAAAGCAGTCAGATTGGACAGAAGCA...TATAGACCCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR TCA 90 bp | AGCCTGAGTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGGTACTCATTCATCTTTaGCATCCGCGCTTTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLSVHSCSLWSPAEEAERVLIHL*HPRFLF Trigger: AAAAAGAAAGCGCGGATGTCAAAGATGAATGAGTAC...CCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | AGCCTGAGTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGTCTGTCCAATCTGACTaGTTTTCTCTGGAAACAAGT | + |
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Preference number: 4 (lower is better) Translates to: SLSVHSCSLWSPAEEAERSVQSD*FSLETS Trigger: ACTTGTTTCCAGAGAAAAGCAGTCAGATTGGACAGA...CCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | CCAGATACCTGCTACCATATGTTAGAACACAGCCAGCCACGTCATGCTTTCTGTTGTTGGAGTTGCACTTaGGGCACGGGTAGAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: PDTCYHMLEHSQPRHAFCCWSCT*GTGRSI Trigger: GATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACA...ACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAGGTATCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCACCGGCCCACACTTGTTaGAGTTGCACTTGGGGCACG | + |
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Preference number: 4 (lower is better) Translates to: NLKKCFSYMAPRPVTSISPAHTC*SCTWGT Trigger: CGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGG...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | CCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACACCACACTTGTTGGAGTTaGACTTGGGGCACGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: PLQAPALMYVSSQKIYTHHTCWS*TWGTGR Trigger: TCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTG...GTGTGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | AGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACGCGCTTTCTTTTTCTaGTGCCTTGTCTCGGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: RPLQAPALMYVSSQKIYTRAFFF*CLVSGL Trigger: TAACCCCGAGACAAGGCAGCAGAAAAAGAAAGCGCG...TGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | GTTAGAACACAGCCAGCCACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCTGACTGCTTTTCTCTaGAAACAAGTGGTTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: VRTQPATSCFLSAAHPYILTAFL*KQVVSE Trigger: CTCACTAACCACTTGTTTCCAGAGAAAAGCAGTCAG...GATGTATGGATGGGCAGCTGACAGAAAGCATGACGTGGCTGGCTGTGTTCTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | GGCCCCCAGGCCTGTGACATCAATATCATCTGGGAAATCGTTTCAAATGTAAATTGTTGGAGTTGCACTTaGGGCACGGGTAGAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: GPQACDINIIWEIVSNVNCWSCT*GTGRSI Trigger: GATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACA...ATTTACATTTGAAACGATTTCCCAGATGATATTGATGTCACAGGCCTGGGGGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | CCAGATACCTGCTACCATATGTTAGAACACAGCCAGCCACGTCATGCTTTCTGTTGCCGTTCTATCTGTTaGAGTTGCTTCTGTCCAATC | + |
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Preference number: 4 (lower is better) Translates to: PDTCYHMLEHSQPRHAFCCRSIC*SCFCPI Trigger: GATTGGACAGAAGCAACTGCAACAGATAGAACGGCA...ACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAGGTATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | CGCAGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACGCTTTCTTTTTCTGCTaGCTTGTCTCGGGGTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: RRPLQAPALMYVSSQKIYAFFFC*LVSGLK Trigger: TTTTAACCCCGAGACAAGGCAGCAGAAAAAGAAAGC...GTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | CCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACACGTCAGGAACACTAAATaGCAGGGTGTTGATGACCTC | + |
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Preference number: 4 (lower is better) Translates to: PLQAPALMYVSSQKIYTHVRNTK*QGVDDL Trigger: GAGGTCATCAACACCCTGCCATTTAGTGTTCCTGAC...GTGTGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR TCA 90 bp | CCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACACTTAGTGAGCTCCTGTTaGGTGGAGTTGTTCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: PLQAPALMYVSSQKIYTHLVSSC*VELFFC Trigger: ACAGAAGAACAACTCCACTCAACAGGAGCTCACTAA...GTGTGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCACGCGCTTTCTTTTTCTaGTGCCTTGTCTCGGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: NLKKCFSYMAPRPVTSISRAFFF*CLVSGL Trigger: TAACCCCGAGACAAGGCAGCAGAAAAAGAAAGCGCG...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | TCGCAGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACTGACTGCTTTTCTCTaGAAACAAGTGGTTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SQASAGTCTDVRKFTKDILTAFL*KQVVSE Trigger: CTCACTAACCACTTGTTTCCAGAGAAAAGCAGTCAG...TATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCTGCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCAGTCAGGAACACTAAATaGCAGGGTGTTGATGACCTC | + |
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Preference number: 4 (lower is better) Translates to: NLKKCFSYMAPRPVTSISVRNTK*QGVDDL Trigger: GAGGTCATCAACACCCTGCCATTTAGTGTTCCTGAC...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR TCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCATGCTTCTGTCCAATCTaGCTGCTTTTCTCTGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: NLKKCFSYMAPRPVTSISCFCPI*LLFSGN Trigger: GTTTCCAGAGAAAAGCAGTCAGATTGGACAGAAGCA...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | CCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACACACTCTGTCCAATCTGACTaGTTTTCTCTGGAAACAAGT | + |
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Preference number: 4 (lower is better) Translates to: PLQAPALMYVSSQKIYTHSVQSD*FSLETS Trigger: ACTTGTTTCCAGAGAAAAGCAGTCAGATTGGACAGA...GTGTGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR GCA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAATGCCGTTCTATCTGTTaGAGTTGCTTCTGTCCAATC | + |
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Preference number: 4 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQCRSIC*SCFCPI Trigger: GATTGGACAGAAGCAACTGCAACAGATAGAACGGCA...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CAA 72 bp | GGTCTATACAATGATTGTCTGGTCTACAGCCATCTGTaGCACCAACACGTATCCAAGAGAAAGAAGTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GLYNDCLVYSHL*HQHVSKRKKFD Trigger: GTCAAACTTCTTTCTCTTGGATACGTGTTGGTGCAACAGATGGCTGTAGACCAGACAATCATTGTATAGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR TCA 90 bp | AACTTAAAGAAGTGCTTTTCATACATGGCCCCCAGGCCTGTGACATCAATATCAGTACTCATTCATCTTTaGCATCCGCGCTTTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: NLKKCFSYMAPRPVTSISVLIHL*HPRFLF Trigger: AAAAAGAAAGCGCGGATGTCAAAGATGAATGAGTAC...TGATATTGATGTCACAGGCCTGGGGGCCATGTATGAAAAGCACTTCTTTAAGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| 3UTR CAA 72 bp | TTCAGTTATTTAAAGCACATACTGCTCTTGAAAAGTTaGGTGGTTCCCAGCACTGATTTCAAGTGGTTCATA | + |
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Preference number: 4 (lower is better) Translates to: FSYLKHILLLKS*VVPSTDFKWFI Trigger: TATGAACCACTTGAAATCAGTGCTGGGAACCACCAAACTTTTCAAGAGCAGTATGTGCTTTAAATAACTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS GCA 90 bp | CCCAGCGGCGGTTGCAGCGGCACTCCGGCCCACACTTGTTGGAGTTaGACTTGGGGCACGGGTAGAAGCATCCCAGGCAGTTCTTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PSGGCSGTPAHTCWS*TWGTGRSIPGSSSP Trigger: TGGAGAAGAACTGCCTGGGATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGAGTGCCGCTGCAACCGCCGCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CCA 90 bp | CATAGACCCAGCGGCGGTTGCAGCGGCACTCCGGCCCACACTTGTTaGAGTTGCACTTGGGGCACGGGTAGAAGCATCCCAGGCAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: HRPSGGCSGTPAHTC*SCTWGTGRSIPGSS Trigger: AGAACTGCCTGGGATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGAGTGCCGCTGCAACCGCCGCTGGGTCTATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | AGCCTGAGTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGCTAAATGGCAGGGTGTaGATGACCTCGCCAGACTCG | + |
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Preference number: 5 (lower is better) Translates to: SLSVHSCSLWSPAEEAERLNGRV*MTSPDS Trigger: CGAGTCTGGCGAGGTCATCAACACCCTGCCATTTAG...CCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | AGCCTGAGTGTCCACTCTTGCAGCCTGTGGTCACCAGCTGAGGAAGCTGAGAGGGTTAGTGAGCTCCTGTaGAGTGGAGTTGTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SLSVHSCSLWSPAEEAERVSELL*SGVVLL Trigger: CAGAAGAACAACTCCACTCAACAGGAGCTCACTAAC...CCTCTCAGCTTCCTCAGCTGGTGACCACAGGCTGCAAGAGTGGACACTCAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | GTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAAGCTCCGGCCCACACTTGTaGGAGTTGCACTTGGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: VMLSVSCPSIHPTSKHTSSGPHL*ELHLGH Trigger: GTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGA...GCTTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAATCCGGCCCACACTTGTaGGAGTTGCACTTGGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQSGPHL*ELHLGH Trigger: GTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGA...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | GTTAGAACACAGCCAGCCACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCTTCTATCTGTTGCAGTaGCTTCTGTCCAATCTGACT | + |
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Preference number: 5 (lower is better) Translates to: VRTQPATSCFLSAAHPYIFYLLQ*LLSNLT Trigger: AGTCAGATTGGACAGAAGCAACTGCAACAGATAGAA...GATGTATGGATGGGCAGCTGACAGAAAGCATGACGTGGCTGGCTGTGTTCTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAACTAAATGGCAGGGTGTaGATGACCTCGCCAGACTCG | + |
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Preference number: 5 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQLNGRV*MTSPDS Trigger: CGAGTCTGGCGAGGTCATCAACACCCTGCCATTTAG...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | GGCCCCCAGGCCTGTGACATCAATATCATCTGGGAAATCGTTTCAAATGTAAATCTGCCGTTCTATCTGTaGCAGTTGCTTCTGTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: GPQACDINIIWEIVSNVNLPFYL*QLLLSN Trigger: ATTGGACAGAAGCAACTGCAACAGATAGAACGGCAG...ATTTACATTTGAAACGATTTCCCAGATGATATTGATGTCACAGGCCTGGGGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAAGTTAGTGAGCTCCTGTaGAGTGGAGTTGTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQVSELL*SGVVLL Trigger: CAGAAGAACAACTCCACTCAACAGGAGCTCACTAAC...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | AGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACATTCTATCTGTTGCAGTaGCTTCTGTCCAATCTGACT | + |
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Preference number: 5 (lower is better) Translates to: RPLQAPALMYVSSQKIYTFYLLQ*LLSNLT Trigger: AGTCAGATTGGACAGAAGCAACTGCAACAGATAGAA...TGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | CCAGATACCTGCTACCATATGTTAGAACACAGCCAGCCACGTCATGCTTTCTGTAGTACTCATTCATCTTaGACATCCGCGCTTTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: PDTCYHMLEHSQPRHAFCSTHSS*TSALSF Trigger: AAAAGAAAGCGCGGATGTCAAAGATGAATGAGTACT...ACAGAAAGCATGACGTGGCTGGCTGTGTTCTAACATATGGTAGCAGGTATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | GGCCCCCAGGCCTGTGACATCAATATCATCTGGGAAATCGTTTCAAATGTAAATAGTACTCATTCATCTTaGACATCCGCGCTTTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: GPQACDINIIWEIVSNVNSTHSS*TSALSF Trigger: AAAAGAAAGCGCGGATGTCAAAGATGAATGAGTACT...ATTTACATTTGAAACGATTTCCCAGATGATATTGATGTCACAGGCCTGGGGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | AGGCCTCTGCAGGCACCTGCACTGATGTACGTAAGTTCACAAAAGATATACACATACTTCTTCATCACCTaGTACTTCACAGAAAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: RPLQAPALMYVSSQKIYTYFFIT*YFTEKY Trigger: GTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTA...TGTGTATATCTTTTGTGAACTTACGTACATCAGTGCAGGTGCCTGCAGAGGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS-3UTR CAA 90 bp | ACGTCATGCTTTCTGTCAGCTGCCCATCCATACATCCAACTAGTAAACATACAATACTTCTTCATCACCTaGTACTTCACAGAAAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: TSCFLSAAHPYIQLVNIQYFFIT*YFTEKY Trigger: GTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTA...TTGTATGTTTACTAGTTGGATGTATGGATGGGCAGCTGACAGAAAGCATGACGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CCA 72 bp | AGCGGCGGTTGCAGCGGCACTCCGGCCCACACTTGTTaGAGTTGCACTTGGGGCACGGGTAGAAGCATCCCA | + |
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Preference number: 6 (lower is better) Translates to: SGGCSGTPAHTC*SCTWGTGRSIP Trigger: TGGGATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGAGTGCCGCTGCAACCGCCGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS GCA 72 bp | GGTTGCAGCGGCACTCCGGCCCACACTTGTTGGAGTTaGACTTGGGGCACGGGTAGAAGCATCCCAGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: GCSGTPAHTCWS*TWGTGRSIPGS Trigger: ACTGCCTGGGATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGAGTGCCGCTGCAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CCA 72 bp | AGCGGCACTCCGGCCCACACTTGTTGGAGTTGCACTTaGGGCACGGGTAGAAGCATCCCAGGCAGTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SGTPAHTCWSCT*GTGRSIPGSSS Trigger: AGAAGAACTGCCTGGGATGCTTCTACCCGTGCCCCAAGTGCAACTCCAACAAGTGTGGGCCGGAGTGCCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS GCA 72 bp | GGCAGTCACACAGGTCCACGTCGTTACAGATCAGCCTaGCGCTTTTGTCGTACTTCTTCATCACCTTGTACT | + |
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Preference number: 6 (lower is better) Translates to: GSHTGPRRYRSA*RFCRTSSSPCT Trigger: AGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGATCTGTAACGACGTGGACCTGTGTGACTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CAA 72 bp | CACAGGTCCACGTCGTTACAGATCAGCCTGCCGCTTTaGTCGTACTTCTTCATCACCTTGTACTTCACAGAA | + |
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Preference number: 6 (lower is better) Translates to: HRSTSLQISLPL*SYFFITLYFTE Trigger: TTCTGTGAAGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGATCTGTAACGACGTGGACCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CAA 90 bp | AGGCAGTCACACAGGTCCACGTCGTTACAGATCAGCCTGCCGCTTTaGTCGTACTTCTTCATCACCTTGTACTTCACAGAAAAGTACTCA | + |
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Preference number: 6 (lower is better) Translates to: RQSHRSTSLQISLPL*SYFFITLYFTEKYS Trigger: TGAGTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGATCTGTAACGACGTGGACCTGTGTGACTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CAA 90 bp | TCGTTACAGATCAGCCTGCCGCTTTTGTCGTACTTCTTCATCACCTaGTACTTCACAGAAAAGTACTCATTCATCTTTGACATCCGCGCT | + |
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Preference number: 6 (lower is better) Translates to: SLQISLPLLSYFFIT*YFTEKYSFIFDIRA Trigger: AGCGCGGATGTCAAAGATGAATGAGTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGATCTGTAACGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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| CDS CAA 72 bp | ATCAGCCTGCCGCTTTTGTCGTACTTCTTCATCACCTaGTACTTCACAGAAAAGTACTCATTCATCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: ISLPLLSYFFIT*YFTEKYSFIFD Trigger: GTCAAAGATGAATGAGTACTTTTCTGTGAAGTACAAGGTGATGAAGAAGTACGACAAAAGCGGCAGGCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097580.2 ENSMUST00000234910.2 |
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