Pregenerated sensors for ARL14EP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027122Ensembl transcript IDs: ENSMUST00000028536.13, ENSMUST00000093883.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACACATGCATGTTGCCCAGCGTGAAAAGGCTGTGGTGCGAAGCCTaGAGAGGTCCAGGGCCAGCCTGGGCTACAGTGCAAGGCCCTGCA | + |
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Preference number: 1 (lower is better) Translates to: NTCMLPSVKRLWCEA*RGPGPAWATVQGPA Trigger: TGCAGGGCCTTGCACTGTAGCCCAGGCTGGCCCTGGACCTCTGCAGGCTTCGCACCACAGCCTTTTCACGCTGGGCAACATGCATGTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 90 bp | AGGCTCCGGGAGCCTGCCGAAGGCTTTAGTAAGAAGTGCTGGGGCTaGTTCCATTCTGACTTCTCAGCGGCCTTCATCAGTACCCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: RLREPAEGFSKKCWG*FHSDFSAAFISTQK Trigger: CTTCTGGGTACTGATGAAGGCCGCTGAGAAGTCAGAATGGAAGCAGCCCCAGCACTTCTTACTAAAGCCTTCGGCAGGCTCCCGGAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR CCA 90 bp | GCTTCCAAGCACTCTAAGCTGCTAAGACTCGGAACAGCAGCAGCTTaGAGGCTCCGGGAGCCTGCCGAAGGCTTTAGTAAGAAGTGCTGG | + |
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Preference number: 1 (lower is better) Translates to: ASKHSKLLRLGTAAA*RLREPAEGFSKKCW Trigger: CCAGCACTTCTTACTAAAGCCTTCGGCAGGCTCCCGGAGCCTCCAAGCTGCTGCTGTTCCGAGTCTTAGCAGCTTAGAGTGCTTGGAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR TCA 90 bp | AACTTTAAATTTAGCAGCCTGGTAACACATGCATGTTGCCCAGCGTaGAAAGGCTGTGGTGCGAAGCCTGCAGAGGTCCAGGGCCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: NFKFSSLVTHACCPA*KGCGAKPAEVQGQP Trigger: AGGCTGGCCCTGGACCTCTGCAGGCTTCGCACCACAGCCTTTTCACGCTGGGCAACATGCATGTGTTACCAGGCTGCTAAATTTAAAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR CCA 90 bp | CTAGGACCGTCTTCTTGCTCATCCCAGCTGCTTCCCTCAGCAATGTaGGTTAAGTTTCCATCATCAGGTTCCTCTGATGCATCTGTCTCC | + |
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Preference number: 1 (lower is better) Translates to: LGPSSCSSQLLPSAM*VKFPSSGSSDASVS Trigger: GGAGACAGATGCATCAGAGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATGAGCAAGAAGACGGTCCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR TCA 90 bp | AACACTCCCATGACCAGCGGCGATGTCTACAATTCCATTCAGGACTaGTCCAAACTTCACTTCCAGAAATATCACTGTTCAATTCTTTTC | + |
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Preference number: 1 (lower is better) Translates to: NTPMTSGDVYNSIQD*SKLHFQKYHCSILF Trigger: GAAAAGAATTGAACAGTGATATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCGCTGGTCATGGGAGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR GCA 90 bp | GAAGTCTATCTATCACATCTATCCAGTTTTAACAGTCAGAAATACTaGTGTGAAGGTTTGAATAAGGGTCCCATAGGCTCATCATACACT | + |
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Preference number: 1 (lower is better) Translates to: EVYLSHLSSFNSQKY*CEGLNKGPIGSSYT Trigger: AGTGTATGATGAGCCTATGGGACCCTTATTCAAACCTTCACAGCAGTATTTCTGACTGTTAAAACTGGATAGATGTGATAGATAGACTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR TCA 90 bp | CATTGCCTTGGTTATGGTATCTCTTCACAGCAATGGAACAGTGACTaGGACAAATATGCAGCCATTTATGAACTATACACTCATGTTTTA | + |
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Preference number: 1 (lower is better) Translates to: HCLGYGISSQQWNSD*DKYAAIYELYTHVL Trigger: TAAAACATGAGTGTATAGTTCATAAATGGCTGCATATTTGTCTCAGTCACTGTTCCATTGCTGTGAAGAGATACCATAACCAAGGCAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR-3UTR GCA 90 bp | CCAGCCTGGGCTACAGTGCAAGGCCCTGCAGCAAGGAAACAGAATGATAGAAAAACTGACACATCTTTCTaGAGGCCACCGTTCTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: PAWATVQGPAARKQNDRKTDTSF*RPPFSP Trigger: TGGGGAGAACGGTGGCCTGCAGAAAGATGTGTCAGT...TTTTCTATCATTCTGTTTCCTTGCTGCAGGGCCTTGCACTGTAGCCCAGGCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR-3UTR TCA 90 bp | CCAGCCTGGGCTACAGTGCAAGGCCCTGCAGCAAGGAAACAGAATGATAGAAAACAATGGAACAGTGACTaGGACAAATATGCAGCCATT | + |
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Preference number: 2 (lower is better) Translates to: PAWATVQGPAARKQNDRKQWNSD*DKYAAI Trigger: AATGGCTGCATATTTGTCTCAGTCACTGTTCCATTG...TTTTCTATCATTCTGTTTCCTTGCTGCAGGGCCTTGCACTGTAGCCCAGGCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR CAA 90 bp | TTTCTATCCCACATGCCCCAGCGTCTCCAACTTTCCATCACTCTCTaGAGGGACATTTTTAGAAGTCTATCTATCACATCTATCCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: FLSHMPQRLQLSITL*RDIFRSLSITSIQF Trigger: AAACTGGATAGATGTGATAGATAGACTTCTAAAAATGTCCCTCAAGAGAGTGATGGAAAGTTGGAGACGCTGGGGCATGTGGGATAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | ATGTTGCCCAGCGTGAAAAGGCTGTGGTGCGAAGCCTaGAGAGGTCCAGGGCCAGCCTGGGCTACAGTGCAA | + |
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Preference number: 3 (lower is better) Translates to: MLPSVKRLWCEA*RGPGPAWATVQ Trigger: TTGCACTGTAGCCCAGGCTGGCCCTGGACCTCTGCAGGCTTCGCACCACAGCCTTTTCACGCTGGGCAACAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | AAGCCTGCAGAGGTCCAGGGCCAGCCTGGGCTACAGTaGAAGGCCCTGCAGCAAGGAAACAGAATGATAGAA | + |
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Preference number: 3 (lower is better) Translates to: KPAEVQGQPGLQ*KALQQGNRMIE Trigger: TTCTATCATTCTGTTTCCTTGCTGCAGGGCCTTGCACTGTAGCCCAGGCTGGCCCTGGACCTCTGCAGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR CCA 72 bp | CACTCTAAGCTGCTAAGACTCGGAACAGCAGCAGCTTaGAGGCTCCGGGAGCCTGCCGAAGGCTTTAGTAAG | + |
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Preference number: 3 (lower is better) Translates to: HSKLLRLGTAAA*RLREPAEGFSK Trigger: CTTACTAAAGCCTTCGGCAGGCTCCCGGAGCCTCCAAGCTGCTGCTGTTCCGAGTCTTAGCAGCTTAGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR TCA 72 bp | TTTAGCAGCCTGGTAACACATGCATGTTGCCCAGCGTaGAAAGGCTGTGGTGCGAAGCCTGCAGAGGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: FSSLVTHACCPA*KGCGAKPAEVQ Trigger: CTGGACCTCTGCAGGCTTCGCACCACAGCCTTTTCACGCTGGGCAACATGCATGTGTTACCAGGCTGCTAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | GAGCCTGCCGAAGGCTTTAGTAAGAAGTGCTGGGGCTaGTTCCATTCTGACTTCTCAGCGGCCTTCATCAGT | + |
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Preference number: 3 (lower is better) Translates to: EPAEGFSKKCWG*FHSDFSAAFIS Trigger: ACTGATGAAGGCCGCTGAGAAGTCAGAATGGAAGCAGCCCCAGCACTTCTTACTAAAGCCTTCGGCAGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | TGTTGCATGGAGATCAATTTTCTGTGTCACAGGCCCTaGTTCCAGCTAAGGGCCGGGTCTATTTGCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: CCMEINFLCHRP*FQLRAGSICTA Trigger: TGCTGTGCAAATAGACCCGGCCCTTAGCTGGAAGCAGGGCCTGTGACACAGAAAATTGATCTCCATGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR CCA 72 bp | TCTTCTTGCTCATCCCAGCTGCTTCCCTCAGCAATGTaGGTTAAGTTTCCATCATCAGGTTCCTCTGATGCA | + |
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Preference number: 3 (lower is better) Translates to: SSCSSQLLPSAM*VKFPSSGSSDA Trigger: TGCATCAGAGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATGAGCAAGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR-3UTR CAA 90 bp | TGCTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCTCTGATGCATTCCTCGTTTTCGTCTTaGTTGGTCAATATTTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: CFPQQCGLSFHHQVPLMHSSFSS*LVNIWV Trigger: CACCCAAATATTGACCAACAAAGACGAAAACGAGGA...ATGCATCAGAGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR-3UTR CAA 90 bp | TTAAGTTTCCATCATCAGGTTCCTCTGATGCATCTGTCTCCAGAACAGCAATGGTCCTCGTTTTCGTCTTaGTTGGTCAATATTTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: LSFHHQVPLMHLSPEQQWSSFSS*LVNIWV Trigger: CACCCAAATATTGACCAACAAAGACGAAAACGAGGA...CCATTGCTGTTCTGGAGACAGATGCATCAGAGGAACCTGATGATGGAAACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR TCA 72 bp | GTCTCCGAATACATACAAAGAACACACAGCAACTGTTaGGACTCTTCCCCTTGGAAAACGTTATTCTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: VSEYIQRTHSNC*DSSPWKTLFSL Trigger: TAAAGAGAATAACGTTTTCCAAGGGGAAGAGTCTCAACAGTTGCTGTGTGTTCTTTGTATGTATTCGGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | TGTAAGCAAGCCCTCAATGCTTCTTTTTATAAGCATTaGCTTGGTTATGGTATCTCTTCACAGCAATGGAAC | + |
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Preference number: 3 (lower is better) Translates to: CKQALNASFYKH*LGYGISSQQWN Trigger: GTTCCATTGCTGTGAAGAGATACCATAACCAAGGCAATGCTTATAAAAAGAAGCATTGAGGGCTTGCTTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| 3UTR GCA 72 bp | CTATCACATCTATCCAGTTTTAACAGTCAGAAATACTaGTGTGAAGGTTTGAATAAGGGTCCCATAGGCTCA | + |
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Preference number: 3 (lower is better) Translates to: LSHLSSFNSQKY*CEGLNKGPIGS Trigger: TGAGCCTATGGGACCCTTATTCAAACCTTCACAGCAGTATTTCTGACTGTTAAAACTGGATAGATGTGATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| CDS-3UTR GCA 90 bp | CCAGCCTGGGCTACAGTGCAAGGCCCTGCAGCAAGGAAACAGAATGATAGAAAACCTTCAATCTCTATCTaGTCATACAGCCACTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: PAWATVQGPAARKQNDRKPSISI*SYSHFR Trigger: CCGAAAGTGGCTGTATGAGCAGATAGAGATTGAAGG...TTTTCTATCATTCTGTTTCCTTGCTGCAGGGCCTTGCACTGTAGCCCAGGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| CDS-3UTR CCA 90 bp | CCAGCGGCGATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGATGTGTGGTACGAAGCTaGACTCCAACTGAACACGGA | + |
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Preference number: 4 (lower is better) Translates to: PAAMSTIPFRTDPNFTSRCVVRS*TPTEHG Trigger: TCCGTGTTCAGTTGGAGTCCAGCTTCGTACCACACA...TCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR TCA 90 bp | TTAAGTTTCCATCATCAGGTTCCTCTGATGCATCTGTCTCCAGAACAGCAATGGCGCTTGTGGCTTTGGTaGGCTTTCTTTTCTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LSFHHQVPLMHLSPEQQWRLWLW*AFFSPS Trigger: AGAGGGAGAAAAGAAAGCTCACCAAAGCCACAAGCG...CCATTGCTGTTCTGGAGACAGATGCATCAGAGGAACCTGATGATGGAAACTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR GCA 90 bp | ATAACTTTGTCTAGGACCGTCTTCTTGCTCATCCCAGCTGCTTCCCTCAGCAATCCTTCAATCTCTATCTaGTCATACAGCCACTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: ITLSRTVFLLIPAASLSNPSISI*SYSHFR Trigger: CCGAAAGTGGCTGTATGAGCAGATAGAGATTGAAGG...ATTGCTGAGGGAAGCAGCTGGGATGAGCAAGAAGACGGTCCTAGACAAAGTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CCA 90 bp | CATCCCAGCTGCTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCTCGTGCAGGTTCTTTTTaGCTAGCTTCTTGTGTATGT | + |
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Preference number: 4 (lower is better) Translates to: HPSCFPQQCGLSFHHQVPRAGSF*LASCVC Trigger: ACATACACAAGAAGCTAGCCAAAAAGAACCTGCACG...AGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CCA 90 bp | CCAGCGGCGATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGACGTGCAGGTTCTTTTTaGCTAGCTTCTTGTGTATGT | + |
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Preference number: 4 (lower is better) Translates to: PAAMSTIPFRTDPNFTSRRAGSF*LASCVC Trigger: ACATACACAAGAAGCTAGCCAAAAAGAACCTGCACG...TCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCGCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR TCA 90 bp | CTTCTTGCTCATCCCAGCTGCTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATATTCTTTCAATGTCTTaGAACCTGTGTGCCGAGTAT | + |
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Preference number: 4 (lower is better) Translates to: LLAHPSCFPQQCGLSFHHILSMS*NLCAEY Trigger: ATACTCGGCACACAGGTTTCAAGACATTGAAAGAAT...ATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATGAGCAAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR CAA 72 bp | CACATGCCCCAGCGTCTCCAACTTTCCATCACTCTCTaGAGGGACATTTTTAGAAGTCTATCTATCACATCT | + |
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Preference number: 4 (lower is better) Translates to: HMPQRLQLSITL*RDIFRSLSITS Trigger: AGATGTGATAGATAGACTTCTAAAAATGTCCCTCAAGAGAGTGATGGAAAGTTGGAGACGCTGGGGCATGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| CDS-3UTR TCA 90 bp | TGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATATCACTGCGCTTGTGGCTTTGGTaGGCTTTCTTTTCTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: CLQFHSGLIQTSLPEISLRLWLW*AFFSPS Trigger: AGAGGGAGAAAAGAAAGCTCACCAAAGCCACAAGCG...CAGTGATATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR TCA 90 bp | CGGCGATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATACATCATCTAAGTCAATaGCGTGCAGGTTCTTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RRCLQFHSGLIQTSLPEIHHLSQ*RAGSFW Trigger: CCAAAAAGAACCTGCACGTCATTGACTTAGATGATG...TATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CCA 90 bp | ATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATATCACTTGTGTGGTACGAAGCTaGACTCCAACTGAACACGGA | + |
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Preference number: 4 (lower is better) Translates to: MSTIPFRTDPNFTSRNITCVVRS*TPTEHG Trigger: TCCGTGTTCAGTTGGAGTCCAGCTTCGTACCACACA...AGTGATATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| 3UTR CAA 72 bp | AGCAAGCCCTCAATGCTTCTTTTTATAAGCATTGCCTaGGTTATGGTATCTCTTCACAGCAATGGAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: SKPSMLLFISIA*VMVSLHSNGTV Trigger: CACTGTTCCATTGCTGTGAAGAGATACCATAACCAAGGCAATGCTTATAAAAAGAAGCATTGAGGGCTTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| CDS-3UTR CCA 90 bp | AGGTACCTTTCTGACCACTCCAATGTTGTGAAGTTATCTATTTACAATACAGTCCTTCCATTGATGATCTaGGTACATTTGGGGCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: RYLSDHSNVVKLSIYNTVLPLMI*VHLGQS Trigger: GCTTTGCCCCAAATGTACCCAGATCATCAATGGAAG...GACTGTATTGTAAATAGATAACTTCACAACATTGGAGTGGTCAGAAAGGTACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR TCA 90 bp | AGGTACCTTTCTGACCACTCCAATGTTGTGAAGTTATCTATTTACAATACAGTCATTCTTTCAATGTCTTaGAACCTGTGTGCCGAGTAT | + |
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Preference number: 4 (lower is better) Translates to: RYLSDHSNVVKLSIYNTVILSMS*NLCAEY Trigger: ATACTCGGCACACAGGTTTCAAGACATTGAAAGAAT...GACTGTATTGTAAATAGATAACTTCACAACATTGGAGTGGTCAGAAAGGTACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR GCA 90 bp | CATCTATCCAGTTTTAACAGTCAGAAATACTGCTGTGAAGGTTTGAATAAGGGTATACACCTTACTCTTTaGTGGAATAATTTGTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: HLSSFNSQKYCCEGLNKGIHLTL*WNNLSV Trigger: GACAGACAAATTATTCCAGCAAAGAGTAAGGTGTAT...ACCCTTATTCAAACCTTCACAGCAGTATTTCTGACTGTTAAAACTGGATAGATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028536.13 |
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| CDS-3UTR GCA 90 bp | ATCACTGTTCAATTCTTTTCCTCGTTTTCGTCTTTGTTGGTCAATATTTGGGTGATACACCTTACTCTTTaGTGGAATAATTTGTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: ITVQFFSSFSSLLVNIWVIHLTL*WNNLSV Trigger: GACAGACAAATTATTCCAGCAAAGAGTAAGGTGTAT...CACCCAAATATTGACCAACAAAGACGAAAACGAGGAAAAGAATTGAACAGTGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS TCA 90 bp | ATCCCAAGCAGTCCTCGTCCAGGCAGTCGCAGAGGTCCATGCCACTaGAAATCAGCAGGCCCTGGCTGTCATACACCTTACTCTTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: IPSSPRPGSRRGPCH*KSAGPGCHTPYSLL Trigger: CAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGCATGGACCTCTGCGACTGCCTGGACGAGGACTGCTTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | TCATCCCAGCTGCTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCCACTCAGCCCCACATTaGGTAGAGCCACAAGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: SSQLLPSAMWVKFPSSGSHSAPH*VEPQVG Trigger: CCCCACTTGTGGCTCTACCAAATGTGGGGCTGAGTG...GGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | CCAGCGGCGATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGACACTCAGCCCCACATTaGGTAGAGCCACAAGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: PAAMSTIPFRTDPNFTSRHSAPH*VEPQVG Trigger: CCCCACTTGTGGCTCTACCAAATGTGGGGCTGAGTG...TCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS CCA 90 bp | TCCAGGCAGTCGCAGAGGTCCATGCCACTGAAAATCAGCAGGCCCTaGCTGTCATACACCTTACTCTTTGCTGGAATAATTTGTCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: SRQSQRSMPLKISRP*LSYTLLFAGIICLS Trigger: TGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGCATGGACCTCTGCGACTGCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS GCA 90 bp | GCCACTGAAAATCAGCAGGCCCTGGCTGTCATACACCTTACTCTTTaGTGGAATAATTTGTCTGTCAGAAGCAGCGCTTGTGGCTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: ATENQQALAVIHLTL*WNNLSVRSSACGFG Trigger: ACCAAAGCCACAAGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS CCA 90 bp | ACTGAAAATCAGCAGGCCCTGGCTGTCATACACCTTACTCTTTGCTaGAATAATTTGTCTGTCAGAAGCAGCGCTTGTGGCTTTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: TENQQALAVIHLTLC*NNLSVRSSACGFGE Trigger: CTCACCAAAGCCACAAGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | TCATCCCAGCTGCTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCACGTCCACACTTCCATaGATGATCTGGGTACATTTG | + |
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Preference number: 5 (lower is better) Translates to: SSQLLPSAMWVKFPSSGSTSTLP*MIWVHL Trigger: CAAATGTACCCAGATCATCAATGGAAGTGTGGACGT...GGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAGCAGCTGGGATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | ATAACTTTGTCTAGGACCGTCTTCTTGCTCATCCCAGCTGCTTCCCTCAGCAATCTTTGCTGGAATAATTaGTCTGTCAGAAGCAGCGCT | + |
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Preference number: 5 (lower is better) Translates to: ITLSRTVFLLIPAASLSNLCWNN*SVRSSA Trigger: AGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAG...ATTGCTGAGGGAAGCAGCTGGGATGAGCAAGAAGACGGTCCTAGACAAAGTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | CTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCTCTGATGCATCTCTTTGCTGGAATAATTaGTCTGTCAGAAGCAGCGCT | + |
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Preference number: 5 (lower is better) Translates to: LPSAMWVKFPSSGSSDASLCWNN*SVRSSA Trigger: AGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAG...AGATGCATCAGAGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | CTTCCCTCAGCAATGTGGGTTAAGTTTCCATCATCAGGTTCCTCTGATGCATCTCGTGATGGAGACAAATaGTATTATTCCCAGAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: LPSAMWVKFPSSGSSDASRDGDK*YYSQKV Trigger: CACTTTCTGGGAATAATACAATTTGTCTCCATCACG...AGATGCATCAGAGGAACCTGATGATGGAAACTTAACCCACATTGCTGAGGGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | CGGCGATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATAAATTCTTTCAATGTCTaGAAACCTGTGTGCCGAGTA | + |
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Preference number: 5 (lower is better) Translates to: RRCLQFHSGLIQTSLPEINSFNV*KPVCRV Trigger: TACTCGGCACACAGGTTTCAAGACATTGAAAGAATT...TATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACATCGCCG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | ATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATATCACTACGTCCACACTTCCATaGATGATCTGGGTACATTTG | + |
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Preference number: 5 (lower is better) Translates to: MSTIPFRTDPNFTSRNITTSTLP*MIWVHL Trigger: CAAATGTACCCAGATCATCAATGGAAGTGTGGACGT...AGTGATATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS-3UTR CAA 90 bp | ATGTCTACAATTCCATTCAGGACTGATCCAAACTTCACTTCCAGAAATATCACTCGTGATGGAGACAAATaGTATTATTCCCAGAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: MSTIPFRTDPNFTSRNITRDGDK*YYSQKV Trigger: CACTTTCTGGGAATAATACAATTTGTCTCCATCACG...AGTGATATTTCTGGAAGTGAAGTTTGGATCAGTCCTGAATGGAATTGTAGACAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS TCA 72 bp | AGTCCTCGTCCAGGCAGTCGCAGAGGTCCATGCCACTaGAAATCAGCAGGCCCTGGCTGTCATACACCTTAC | + |
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Preference number: 6 (lower is better) Translates to: SPRPGSRRGPCH*KSAGPGCHTPY Trigger: GTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGCATGGACCTCTGCGACTGCCTGGACGAGGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS CCA 72 bp | TCGCAGAGGTCCATGCCACTGAAAATCAGCAGGCCCTaGCTGTCATACACCTTACTCTTTGCTGGAATAATT | + |
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Preference number: 6 (lower is better) Translates to: SQRSMPLKISRP*LSYTLLFAGII Trigger: AATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATTTTCAGTGGCATGGACCTCTGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS CAA 90 bp | CAGCAGGCCCTGGCTGTCATACACCTTACTCTTTGCTGGAATAATTaGTCTGTCAGAAGCAGCGCTTGTGGCTTTGGTGAGCTTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: QQALAVIHLTLCWNN*SVRSSACGFGELSF Trigger: AAAAGAAAGCTCACCAAAGCCACAAGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS GCA 72 bp | AATCAGCAGGCCCTGGCTGTCATACACCTTACTCTTTaGTGGAATAATTTGTCTGTCAGAAGCAGCGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: NQQALAVIHLTL*WNNLSVRSSAC Trigger: ACAAGCGCTGCTTCTGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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| CDS CAA 72 bp | GGAATAATTTGTCTGTCAGAAGCAGCGCTTGTGGCTTaGGTGAGCTTTCTTTTCTCCCTCTTACCGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GIICLSEAALVA*VSFLFSLLPPS Trigger: AGAAGGCGGTAAGAGGGAGAAAAGAAAGCTCACCAAAGCCACAAGCGCTGCTTCTGACAGACAAATTATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028536.13 ENSMUST00000093883.4 |
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