Pregenerated sensors for ARL10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025870Ensembl transcript IDs: ENSMUST00000026988.11, ENSMUST00000142246.2, ENSMUST00000156024.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAACAACAGAGCTTATCATGGGGTGTGGCGGGACGAAAGCGGGGTaGTGGCTGTCAGGTGTTCACACTGTGCCTGAACATTGTGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: ETTELIMGCGGTKAG*WLSGVHTVPEHCAP Trigger: GGGAGCACAATGTTCAGGCACAGTGTGAACACCTGACAGCCATCACCCCGCTTTCGTCCCGCCACACCCCATGATAAGCTCTGTTGTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR TCA 90 bp | TGTGGTGGTACACACCTACAATCCCAGAACTTAGGGACAGAATTATaGGTTCCAGCCAGCCTGGGTTGCATAAAGTATTCAAGACAGATG | + |
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Preference number: 1 (lower is better) Translates to: CGGTHLQSQNLGTEL*VPASLGCIKYSRQM Trigger: CATCTGTCTTGAATACTTTATGCAACCCAGGCTGGCTGGAACTCATAATTCTGTCCCTAAGTTCTGGGATTGTAGGTGTGTACCACCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR-3UTR TCA 90 bp | TCATGGGGTGTGGCGGGACGAAAGCGGGGTGATGGCTGTCAGGTGTTCACACTGTCTATTATGTCACCCTaGGCTGTGGTGGCCCCACCA | + |
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Preference number: 2 (lower is better) Translates to: SWGVAGRKRGDGCQVFTLSIMSP*AVVAPP Trigger: TGGTGGGGCCACCACAGCTCAGGGTGACATAATAGA...CAGTGTGAACACCTGACAGCCATCACCCCGCTTTCGTCCCGCCACACCCCATGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR-3UTR GCA 90 bp | TGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGGAAGAGAGGAAGCGTTaGTATGATGCTCCTGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: WSYTMASSLPQPHVYLTGEERKR*YDAPAQ Trigger: TTGGGCAGGAGCATCATAGCAACGCTTCCTCTCTTC...CCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR CAA 90 bp | GCCTCAGCCCCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTaGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTC | + |
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Preference number: 2 (lower is better) Translates to: ASAPRLPHREDFCTD*ALLLRKRGSVAMML Trigger: GAGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGGGGCTGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR-3UTR CCA 90 bp | CCTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTTAAGAAGGCAGAAATGTaGTATTCAAGGCTGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PPCLSPTSTSPGRLLHGFKKAEM*YSRLGS Trigger: GCTGCCCAGCCTTGAATACCACATTTCTGCCTTCTT...AAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR-3UTR CCA 90 bp | CTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTTGTGGTATTCAAGGCTaGGCAGCAGGCAGGTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: LHGFGLALEEERKRCYDACGIQG*AAGRWV Trigger: GACCCACCTGCCTGCTGCCCAGCCTTGAATACCACA...AGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR-3UTR TCA 90 bp | CCATTACTTAATGTACCCCACTTCTCAGCTCAGTGCAGGCATCCCAGCACCACCTTAGGGACAGAATTATaGGTTCCAGCCAGCCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: PLLNVPHFSAQCRHPSTTLGTEL*VPASLG Trigger: ACCCAGGCTGGCTGGAACTCATAATTCTGTCCCTAA...GGTGGTGCTGGGATGCCTGCACTGAGCTGAGAAGTGGGGTACATTAAGTAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR-3UTR GCA 90 bp | CCATTACTTAATGTACCCCACTTCTCAGCTCAGTGCAGGCATCCCAGCACCACCCAGTATTGTATACCTTaGATAAGGCCAATAATGTCA | + |
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Preference number: 2 (lower is better) Translates to: PLLNVPHFSAQCRHPSTTQYCIP*IRPIMS Trigger: TGACATTATTGGCCTTATGCAAGGTATACAATACTG...GGTGGTGCTGGGATGCCTGCACTGAGCTGAGAAGTGGGGTACATTAAGTAATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR CCA 72 bp | CAGGAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATaGCGTCCTCCCTGCCTCAGCCCCACGTCTACCTCA | + |
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Preference number: 3 (lower is better) Translates to: QEGKARQAGATL*RPPCLSPTSTS Trigger: TGAGGTAGACGTGGGGCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR-3UTR CAA 90 bp | AGGCAAGCTGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCCCCACGTCTACCGATTTGGCCTTGCTCTaGAGGAAGAGAGGAAGCGTT | + |
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Preference number: 3 (lower is better) Translates to: RQAGATLWRPPCLSPTSTDLALL*RKRGSV Trigger: AACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATC...GGTAGACGTGGGGCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR TCA 72 bp | GAGCTTATCATGGGGTGTGGCGGGACGAAAGCGGGGTaGTGGCTGTCAGGTGTTCACACTGTGCCTGAACAT | + |
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Preference number: 3 (lower is better) Translates to: ELIMGCGGTKAG*WLSGVHTVPEH Trigger: ATGTTCAGGCACAGTGTGAACACCTGACAGCCATCACCCCGCTTTCGTCCCGCCACACCCCATGATAAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR CCA 72 bp | AGGCTAGCAACAACAATGCGGAAGAAGGCAGAAATGTaGTATTCAAGGCTGGGCAGCAGGCAGGTGGGTCCA | + |
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Preference number: 3 (lower is better) Translates to: RLATTMRKKAEM*YSRLGSRQVGP Trigger: TGGACCCACCTGCCTGCTGCCCAGCCTTGAATACCACATTTCTGCCTTCTTCCGCATTGTTGTTGCTAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR TCA 72 bp | AGCGGGGTGATGGCTGTCAGGTGTTCACACTGTGCCTaGACATTGTGCTCCCATTACTTAATGTACCCCACT | + |
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Preference number: 3 (lower is better) Translates to: SGVMAVRCSHCA*TLCSHYLMYPT Trigger: AGTGGGGTACATTAAGTAATGGGAGCACAATGTTCAGGCACAGTGTGAACACCTGACAGCCATCACCCCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR GCA 72 bp | CGAAAGCGGGGTGATGGCTGTCAGGTGTTCACACTGTaGCTGAACATTGTGCTCCCATTACTTAATGTACCC | + |
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Preference number: 3 (lower is better) Translates to: RKRGDGCQVFTL*LNIVLPLLNVP Trigger: GGGTACATTAAGTAATGGGAGCACAATGTTCAGGCACAGTGTGAACACCTGACAGCCATCACCCCGCTTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR-3UTR CAA 90 bp | CATTACTTAATGTACCCCACTTCTCAGCTCAGTGCAGGCATCCCAGCACCACCATCCAGCCAGCCTGGGTaGCATAAAGTATTCAAGACA | + |
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Preference number: 3 (lower is better) Translates to: HYLMYPTSQLSAGIPAPPSSQPG*HKVFKT Trigger: TGTCTTGAATACTTTATGCAACCCAGGCTGGCTGGA...TGGTGGTGCTGGGATGCCTGCACTGAGCTGAGAAGTGGGGTACATTAAGTAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR-3UTR CAA 90 bp | CATTACTTAATGTACCCCACTTCTCAGCTCAGTGCAGGCATCCCAGCACCACCAAAAGCGGAAACAGTATaGTATACCTTGCATAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: HYLMYPTSQLSAGIPAPPKAETV*YTLHKA Trigger: GGCCTTATGCAAGGTATACAATACTGTTTCCGCTTT...TGGTGGTGCTGGGATGCCTGCACTGAGCTGAGAAGTGGGGTACATTAAGTAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| 3UTR TCA 72 bp | ACACACCTACAATCCCAGAACTTAGGGACAGAATTATaGGTTCCAGCCAGCCTGGGTTGCATAAAGTATTCA | + |
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Preference number: 3 (lower is better) Translates to: THLQSQNLGTEL*VPASLGCIKYS Trigger: TGAATACTTTATGCAACCCAGGCTGGCTGGAACTCATAATTCTGTCCCTAAGTTCTGGGATTGTAGGTGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| CDS-3UTR GCA 90 bp | CCTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTTAGAGCCCAGCACGGCTaGGGCGCCACCCAGAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: PPCLSPTSTSPGRLLHGFRAQHG*GATQSQ Trigger: CTGGCTCTGGGTGGCGCCGCAGCCGTGCTGGGCTCT...AAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR TCA 90 bp | AGGAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCCTGCCTCATCCCACTCGTCCCACTaGGGGAGGCGGGCAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RKARQGKLELHYGVLPASSHSSH*GRRAVS Trigger: GGACACTGCCCGCCTCCCTCAGTGGGACGAGTGGGA...TGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTTGAGTTTCTGCAGCTCCTaGCGAGCCCAGGGCAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LPASAPRLPHREDFCTDLSFCSS*RAQGSL Trigger: AAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACT...CAAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCCCCAAAGCCAGATCCTaGAGGGGCAATGCTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EGKARQAGATLWRPPCLSPKARS*RGNAGC Trigger: GCAGCCAGCATTGCCCCTGCAGGATCTGGCTTTGGG...GCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCAGGAGGCCCAGCTCCTaGTGCAGCTCCACCATATTC | + |
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Preference number: 4 (lower is better) Translates to: EGKARQAGATLWRPPCLSRRPSS*CSSTIF Trigger: GAATATGGTGGAGCTGCAGCAGGAGCTGGGCCTCCT...GCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR CCA 90 bp | TCACCGGGAAGACTTCTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGGTGGCCTTCCACCGGTaGCTTCCCGGCCAGCATGCG | + |
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Preference number: 4 (lower is better) Translates to: SPGRLLHGFGLALEEERKVAFHR*LPGQHA Trigger: CGCATGCTGGCCGGGAAGCCACCGGTGGAAGGCCAC...CTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAGAAGTCTTCCCGGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTTGAGGGGCAATGCTGGCTaGCAAGAGGAAAACCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: LPASAPRLPHREDFCTDLRGNAG*QEENLP Trigger: AGGGAGGTTTTCCTCTTGGCAGCCAGCATTGCCCCT...CAAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CACACTGCAGGAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCTCCAGATGTGCACAGTaGCGGGTTCCCCAAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: HTAGRQGKASWSYTMASSSRCAQ*RVPQSQ Trigger: CTGGCTTTGGGGAACCCGGCACTGTGCACATCTGGA...GGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTCCTGCAGTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR TCA 90 bp | GCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCCCCACGTCTGCACGTCCACCTCGTTaGCAAACTCCTTCCAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: ARQAGATLWRPPCLSPTSARPPR*QTPSSK Trigger: TTTACTGGAAGGAGTTTGTCAACGAGGTGGACGTGC...AGACGTGGGGCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR TCA 90 bp | GGACGAAAGCGGGGTGATGGCTGTCAGGTGTTCACACTGTGCCTGAACATTGTGCAGTCGAGTCCACCATaGACACCAGCACGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: GRKRGDGCQVFTLCLNIVQSSPP*TPARPP Trigger: AGGTGGACGTGCTGGTGTTCATGGTGGACTCGACTG...CACAATGTTCAGGCACAGTGTGAACACCTGACAGCCATCACCCCGCTTTCGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| CDS-3UTR GCA 90 bp | ACCACCATCCTCTATTATGTCACCCTGAGCTGTGGTGGCCCCACCAATAAAGCGAGTTTCTGCAGCTCCTaGCGAGCCCAGGGCAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: TTILYYVTLSCGGPTNKASFCSS*RAQGSL Trigger: AAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACT...CGCTTTATTGGTGGGGCCACCACAGCTCAGGGTGACATAATAGAGGATGGTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| CDS-3UTR GCA 90 bp | CACACTGCAGGAAGGCAAGGCAAGGCAAGCTGGAGCTACACTATGGCGTCCTCCATCCTGCAGGGGCAATaGTGGCTGCCAAGAGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: HTAGRQGKASWSYTMASSILQGQ*WLPRGK Trigger: TTTTCCTCTTGGCAGCCAGCATTGCCCCTGCAGGAT...GGAGGACGCCATAGTGTAGCTCCAGCTTGCCTTGCCTTGCCTTCCTGCAGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| 3UTR CAA 72 bp | CCACGTCTACCTCACCGGGAAGACTTCTGCACGGATTaGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: PRLPHREDFCTD*ALLLRKRGSVA Trigger: AGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAGAAGTCTTCCCGGTGAGGTAGACGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR TCA 90 bp | CTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTCAGTCGAGTCCACCATaGACACCAGCACGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: LHGFGLALEEERKRCYDAQSSPP*TPARPP Trigger: AGGTGGACGTGCTGGTGTTCATGGTGGACTCGACTG...AGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | TGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTCACCAACACTTCCCGCTaGTCCAGCTCTTCCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: CTDLALLLRKRGSVAMMLTNTSR*SSSSKA Trigger: GGCCTTGGAAGAGCTGGAGCAGCGGGAAGTGTTGGT...GAGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CGGGAAGACTTCTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCCCCGCTCAGGTCCTaGTTGTTGGCCACTATAACA | + |
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Preference number: 4 (lower is better) Translates to: REDFCTDLALLLRKRGSVAPLRS*LLATIT Trigger: TGTTATAGTGGCCAACAAGCAGGACCTGAGCGGGGC...AACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAGAAGTCTTCCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | TGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTCAGGCCCAGCTCCTGCTaGAGCTCCACCATATTCATG | + |
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Preference number: 4 (lower is better) Translates to: CTDLALLLRKRGSVAMMLRPSSC*SSTIFM Trigger: CATGAATATGGTGGAGCTGCAGCAGGAGCTGGGCCT...GAGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CGGGAAGACTTCTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTAGCAATTTCCAGATGTaGACAGTGCCGGGTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: REDFCTDLALLLRKRGSVSNFQM*TVPGSP Trigger: TGGGGAACCCGGCACTGTGCACATCTGGAAATTGCT...AACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAGAAGTCTTCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR GCA 90 bp | CTGCACGGATTTGGCCTTGCTCTTGAGGAAGAGAGGAAGCGTTGCTATGATGCTGCATGCGCAAGAACGTaGTTTTCCCTGAGCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: LHGFGLALEEERKRCYDAACART*FSLSHP Trigger: TGGATGGCTCAGGGAAAAGCACGTTCTTGCGCATGC...AGCATCATAGCAACGCTTCCTCTCTTCCTCAAGAGCAAGGCCAAATCCGTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS-3UTR TCA 90 bp | AGCTGTGGTGGCCCCACCAATAAAGCGGAAACAGTATTGTATACCTTGCATAAGGCACGTCCACCTCGTTaGCAAACTCCTTCCAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: SCGGPTNKAETVLYTLHKARPPR*QTPSSK Trigger: TTTACTGGAAGGAGTTTGTCAACGAGGTGGACGTGC...CTTATGCAAGGTATACAATACTGTTTCCGCTTTATTGGTGGGGCCACCACAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142246.2 |
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| CDS GCA 90 bp | GAAGTAAGCTTTCCAGAGGATAAAGAGCACAGAGCCCAGCACGGCTaGGGCGCCACCCAGAGCCAGCACCAAGGGGCCCAGCGGCCGCGG | + |
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Preference number: 5 (lower is better) Translates to: EVSFPEDKEHRAQHG*GATQSQHQGAQRPR Trigger: CCGCGGCCGCTGGGCCCCTTGGTGCTGGCTCTGGGTGGCGCCGCAGCCGTGCTGGGCTCTGTGCTCTTTATCCTCTGGAAAGCTTACTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS-3UTR CAA 90 bp | TGGAGCTACACTATGGCGTCCTCCCTGCCTCAGCCCCACGTCTACCTCACCGGGGGCAGCCGAACAGAGTaGAAGCCCCAGGTAGGGACG | + |
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Preference number: 5 (lower is better) Translates to: WSYTMASSLPQPHVYLTGGSRTE*KPQVGT Trigger: CGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCC...CCCGGTGAGGTAGACGTGGGGCTGAGGCAGGGAGGACGCCATAGTGTAGCTCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS TCA 90 bp | CACCGGTGGCTTCCCGGCCAGCATGCGCAAGAACGTGCTTTTCCCTaGGCCATCCAAGCCCAGCACCAACACTTCCCGCTGCTCCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: HRWLPGQHAQERAFP*AIQAQHQHFPLLQL Trigger: GAGCTGGAGCAGCGGGAAGTGTTGGTGCTGGGCTTGGATGGCTCAGGGAAAAGCACGTTCTTGCGCATGCTGGCCGGGAAGCCACCGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS GCA 90 bp | CGTGGCCTTCCACCGGTGGCTTCCCGGCCAGCATGCGCAAGAACGTaGTTTTCCCTGAGCCATCCAAGCCCAGCACCAACACTTCCCGCT | + |
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Preference number: 5 (lower is better) Translates to: RGLPPVASRPACART*FSLSHPSPAPTLPA Trigger: AGCGGGAAGTGTTGGTGCTGGGCTTGGATGGCTCAGGGAAAAGCACGTTCTTGCGCATGCTGGCCGGGAAGCCACCGGTGGAAGGCCACG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS GCA 90 bp | GTGCTTTTCCCTGAGCCATCCAAGCCCAGCACCAACACTTCCCGCTaGTCCAGCTCTTCCAAGGCCGGCTCATCTTCCTCGTCCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: VLFPEPSKPSTNTSR*SSSSKAGSSSSSSG Trigger: GCCCGAGGACGAGGAAGATGAGCCGGCCTTGGAAGAGCTGGAGCAGCGGGAAGTGTTGGTGCTGGGCTTGGATGGCTCAGGGAAAAGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS CCA 90 bp | TTCTTGGTAGGCAGCCGAACAGAGTTGAAGCCCCAGGTAGGGACGTaGCCTTCCACCGGTGGCTTCCCGGCCAGCATGCGCAAGAACGTG | + |
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Preference number: 5 (lower is better) Translates to: FLVGSRTELKPQVGT*PSTGGFPASMRKNV Trigger: CACGTTCTTGCGCATGCTGGCCGGGAAGCCACCGGTGGAAGGCCACGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCCTACCAAGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS GCA 90 bp | ACAACAGGCAGATCCGGATCCCTGTCCAACAGTTTCTGCAGCTCCTaGCGAGCCCAGGGCAGCCTTAGCCGGTCAGTCGAGTCCACCATG | + |
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Preference number: 5 (lower is better) Translates to: TTGRSGSLSNSFCSS*RAQGSLSRSVESTM Trigger: CATGGTGGACTCGACTGACCGGCTAAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACTGTTGGACAGGGATCCGGATCTGCCTGTTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026988.11 ENSMUST00000142246.2 ENSMUST00000156024.2 |
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| CDS GCA 90 bp | GCCACTATAACAACAGGCAGATCCGGATCCCTGTCCAACAGTTTCTaGAGCTCCTGCCGAGCCCAGGGCAGCCTTAGCCGGTCAGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: ATITTGRSGSLSNSF*SSCRAQGSLSRSVE Trigger: CTCGACTGACCGGCTAAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACTGTTGGACAGGGATCCGGATCTGCCTGTTGTTATAGTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026988.11 ENSMUST00000142246.2 ENSMUST00000156024.2 |
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| CDS CCA 72 bp | GGCAGCCGAACAGAGTTGAAGCCCCAGGTAGGGACGTaGCCTTCCACCGGTGGCTTCCCGGCCAGCATGCGC | + |
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Preference number: 6 (lower is better) Translates to: GSRTELKPQVGT*PSTGGFPASMR Trigger: GCGCATGCTGGCCGGGAAGCCACCGGTGGAAGGCCACGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS GCA 72 bp | CCACCGGTGGCTTCCCGGCCAGCATGCGCAAGAACGTaGTTTTCCCTGAGCCATCCAAGCCCAGCACCAACA | + |
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Preference number: 6 (lower is better) Translates to: PPVASRPACART*FSLSHPSPAPT Trigger: TGTTGGTGCTGGGCTTGGATGGCTCAGGGAAAAGCACGTTCTTGCGCATGCTGGCCGGGAAGCCACCGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS GCA 72 bp | AGATCCGGATCCCTGTCCAACAGTTTCTGCAGCTCCTaGCGAGCCCAGGGCAGCCTTAGCCGGTCAGTCGAG | + |
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Preference number: 6 (lower is better) Translates to: RSGSLSNSFCSS*RAQGSLSRSVE Trigger: CTCGACTGACCGGCTAAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACTGTTGGACAGGGATCCGGATCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026988.11 ENSMUST00000142246.2 ENSMUST00000156024.2 |
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| CDS GCA 72 bp | ACAACAGGCAGATCCGGATCCCTGTCCAACAGTTTCTaGAGCTCCTGCCGAGCCCAGGGCAGCCTTAGCCGG | + |
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Preference number: 6 (lower is better) Translates to: TTGRSGSLSNSF*SSCRAQGSLSR Trigger: CCGGCTAAGGCTGCCCTGGGCTCGGCAGGAGCTGCAGAAACTGTTGGACAGGGATCCGGATCTGCCTGTTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026988.11 ENSMUST00000142246.2 ENSMUST00000156024.2 |
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| CDS CCA 72 bp | GTTGAAGCCCCAGGTAGGGACGTGGCCTTCCACCGGTaGCTTCCCGGCCAGCATGCGCAAGAACGTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: VEAPGRDVAFHR*LPGQHAQERAF Trigger: AAAAGCACGTTCTTGCGCATGCTGGCCGGGAAGCCACCGGTGGAAGGCCACGTCCCTACCTGGGGCTTCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS CAA 90 bp | TCTAACAGGTCCACCTCGAAATTCTTGGTAGGCAGCCGAACAGAGTaGAAGCCCCAGGTAGGGACGTGGCCTTCCACCGGTGGCTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: SNRSTSKFLVGSRTE*KPQVGTWPSTGGFP Trigger: CGGGAAGCCACCGGTGGAAGGCCACGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCCTACCAAGAATTTCGAGGTGGACCTGTTAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS CAA 72 bp | TCCACCTCGAAATTCTTGGTAGGCAGCCGAACAGAGTaGAAGCCCCAGGTAGGGACGTGGCCTTCCACCGGT | + |
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Preference number: 6 (lower is better) Translates to: STSKFLVGSRTE*KPQVGTWPSTG Trigger: ACCGGTGGAAGGCCACGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCCTACCAAGAATTTCGAGGTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS CAA 90 bp | TCCTGCTGCAGCTCCACCATATTCATGGCCCCGCTCAGGTCCTGCTaGTTGGCCACTATAACAACAGGCAGATCCGGATCCCTGTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: SCCSSTIFMAPLRSC*LATITTGRSGSLSN Trigger: GTTGGACAGGGATCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGACCTGAGCGGGGCCATGAATATGGTGGAGCTGCAGCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS CAA 90 bp | AGGTTCTGGCTGCCACCAATCTCTAACAGGTCCACCTCGAAATTCTaGGTAGGCAGCCGAACAGAGTTGAAGCCCCAGGTAGGGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: RFWLPPISNRSTSKF*VGSRTELKPQVGTW Trigger: CCACGTCCCTACCTGGGGCTTCAACTCTGTTCGGCTGCCTACCAAGAATTTCGAGGTGGACCTGTTAGAGATTGGTGGCAGCCAGAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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| CDS CAA 90 bp | TGCTGCAGCTCCACCATATTCATGGCCCCGCTCAGGTCCTGCTTGTaGGCCACTATAACAACAGGCAGATCCGGATCCCTGTCCAACAGT | + |
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Preference number: 6 (lower is better) Translates to: CCSSTIFMAPLRSCL*ATITTGRSGSLSNS Trigger: ACTGTTGGACAGGGATCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGACCTGAGCGGGGCCATGAATATGGTGGAGCTGCAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS GCA 72 bp | TGCAGCTCCACCATATTCATGGCCCCGCTCAGGTCCTaGTTGTTGGCCACTATAACAACAGGCAGATCCGGA | + |
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Preference number: 6 (lower is better) Translates to: CSSTIFMAPLRS*LLATITTGRSG Trigger: TCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGACCTGAGCGGGGCCATGAATATGGTGGAGCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS CAA 72 bp | TCCACCATATTCATGGCCCCGCTCAGGTCCTGCTTGTaGGCCACTATAACAACAGGCAGATCCGGATCCCTG | + |
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Preference number: 6 (lower is better) Translates to: STIFMAPLRSCL*ATITTGRSGSL Trigger: CAGGGATCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGACCTGAGCGGGGCCATGAATATGGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026988.11 |
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| CDS CAA 72 bp | CCAACTGGCTCACCTCCCATAGCACTCACCTGCTTGTaGGCCACTATAACAACAGGCAGATCCGGATCCCTG | + |
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Preference number: 6 (lower is better) Translates to: PTGSPPIALTCL*ATITTGRSGSL Trigger: CAGGGATCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGTGAGTGCTATGGGAGGTGAGCCAGTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156024.2 |
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| CDS CAA 90 bp | GTGAGAAGACCAACTGGCTCACCTCCCATAGCACTCACCTGCTTGTaGGCCACTATAACAACAGGCAGATCCGGATCCCTGTCCAACAGT | + |
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Preference number: 6 (lower is better) Translates to: VRRPTGSPPIALTCL*ATITTGRSGSLSNS Trigger: ACTGTTGGACAGGGATCCGGATCTGCCTGTTGTTATAGTGGCCAACAAGCAGGTGAGTGCTATGGGAGGTGAGCCAGTTGGTCTTCTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156024.2 |
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| CDS CAA 72 bp | CTGCCACCAATCTCTAACAGGTCCACCTCGAAATTCTaGGTAGGCAGCCGAACAGAGTTGAAGCCCCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: LPPISNRSTSKF*VGSRTELKPQV Trigger: TACCTGGGGCTTCAACTCTGTTCGGCTGCCTACCAAGAATTTCGAGGTGGACCTGTTAGAGATTGGTGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026988.11 ENSMUST00000156024.2 |
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