Pregenerated sensors for ARL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060904Ensembl transcript IDs: ENSMUST00000116234.9
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTTATTACAAATATTGAAGTCAGGCAGGTCTGTCTATaGCAGAATCGCACAGCTCCAGCAGTCACAGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: FITNIEVRQVCL*QNRTAPAVTGS Trigger: GCTTCCTGTGACTGCTGGAGCTGTGCGATTCTGGCATAGACAGACCTGCCTGACTTCAATATTTGTAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR TCA 90 bp | TCTCAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCAGCATTTGCCATTTCTaGGGGTGTCATGGCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SQAAQAGLRFTTKLNSWVSICHF*GCHGLF Trigger: GAACAGGCCATGACACCCTCAGAAATGGCAAATGCT...GACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR GCA 90 bp | CAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCTTCACTCAGACTTGGAAATaGCAATTCGATCTCGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: QAAQAGLRFTTKLNSWVFTQTWK*QFDLGH Trigger: GTGACCGAGATCGAATTGGCATTTCCAAGTCTGAGT...GAAGACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR CCA 90 bp | TCTCAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCCTTCTTCCTCCAACATaGCAACTAACTCAGACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SQAAQAGLRFTTKLNSWVLLPPT*QLTQTW Trigger: CCAAGTCTGAGTTAGTTGCCATGTTGGAGGAAGAAG...GACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR CCA 90 bp | CAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCTTCATAACATCTCCAGTATaGCCTGATACTTGTCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QAAQAGLRFTTKLNSWVFITSPV*PDTCLS Trigger: GGACAGACAAGTATCAGGCCATACTGGAGATGTTAT...GAAGACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR TCA 90 bp | CAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCTTCCCCAAACTTGGAATTTaGGATTTTTGTATGTCACCG | + |
|
Preference number: 4 (lower is better) Translates to: QAAQAGLRFTTKLNSWVFPKLGI*DFCMSP Trigger: CGGTGACATACAAAAATCTCAAATTCCAAGTTTGGG...GAAGACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR GCA 90 bp | ATCGCACAGCTCCAGCAGTCACAGGAAGCACACCTGACTGCTTCCAATGAGTATGAAGTTTTAAAGATCTaGCACTTCCGGTCCTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: IAQLQQSQEAHLTASNEYEVLKI*HFRSFR Trigger: CCTGAAGGACCGGAAGTGGCAGATCTTTAAAACTTC...ATACTCATTGGAAGCAGTCAGGTGTGCTTCCTGTGACTGCTGGAGCTGTGCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR TCA 90 bp | CAGCTCCAGCAGTCACAGGAAGCACACCTGACTGCTTCCAATGAGTATGTGATGAGTGCCTTTGGTTGCTaGAGTTTTAAAGATCTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QLQQSQEAHLTASNEYVMSAFGC*SFKDLP Trigger: TGGCAGATCTTTAAAACTTCAGCAACCAAAGGCACT...CATCACATACTCATTGGAAGCAGTCAGGTGTGCTTCCTGTGACTGCTGGAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR CCA 90 bp | TCTCAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCAAATCCTCATTTCTCTaGTTCCAAAGAGACTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SQAAQAGLRFTTKLNSWVKSSFL*FQRDWK Trigger: TTTCCAGTCTCTTTGGAACCAGAGAAATGAGGATTT...GACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR TCA 90 bp | CAGCTCCAGCAGTCACAGGAAGCACACCTGACTGCTTCCAATGAGTATGTGATGTGTCAACGACATAGATaGCTGCATCTGTGTTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: QLQQSQEAHLTASNEYVMCQRHR*LHLCLN Trigger: ATTCAAACACAGATGCAGTCATCTATGTCGTTGACA...CATCACATACTCATTGGAAGCAGTCAGGTGTGCTTCCTGTGACTGCTGGAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR CAA 90 bp | ATCGCACAGCTCCAGCAGTCACAGGAAGCACACCTGACTGCTTCCAATGAGTATTCAAGGCCAGTGCCTTaGGTTGCTGAAGTTTTAAAG | + |
|
Preference number: 5 (lower is better) Translates to: IAQLQQSQEAHLTASNEYSRPVP*VAEVLK Trigger: CTTTAAAACTTCAGCAACCAAAGGCACTGGCCTTGA...ATACTCATTGGAAGCAGTCAGGTGTGCTTCCTGTGACTGCTGGAGCTGTGCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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| CDS-3UTR CAA 90 bp | TCTCAAGCAGCCCAGGCTGGCCTCAGATTCACCACAAAGCTGAACTCTTGGGTCTCCCAAACTTGGAATTaGAGATTTTTGTATGTCACC | + |
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Preference number: 5 (lower is better) Translates to: SQAAQAGLRFTTKLNSWVSQTWN*RFLYVT Trigger: GGTGACATACAAAAATCTCAAATTCCAAGTTTGGGA...GACCCAAGAGTTCAGCTTTGTGGTGAATCTGAGGCCAGCCTGGGCTGCTTGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116234.9 |
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