Pregenerated sensors for ARID3C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066224Ensembl transcript IDs: ENSMUST00000084698.12, ENSMUST00000150809.3, ENSMUST00000171251.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCGACTGGATCCCAGAGTaGGCGTCACATCCTGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: STILFSRCNPRDIFTFKSDWIPE*ASHPER Trigger: TCTTTCAGGATGTGACGCCCACTCTGGGATCCAGTC...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| 3UTR-3UTR CCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCCCTTTGGTGTGGAGGTaGCATGCTGACATCAACCAG | + |
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Preference number: 2 (lower is better) Translates to: STILFSRCNPRDIFTFKSPLVWR*HADINQ Trigger: CTGGTTGATGTCAGCATGCCACCTCCACACCAAAGG...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| 3UTR-3UTR TCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCCCTTCACCTGCTTCCTaGAAAGGAGCAGAATTGACT | + |
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Preference number: 2 (lower is better) Translates to: STILFSRCNPRDIFTFKSPSPAS*KGAELT Trigger: AGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGG...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| 3UTR TCA 72 bp | CGTAATATAAATCCCTTTGGTGTGGAGGTGGCATGCTaGCATCAACCAGGACTGGATCCCAGAGTGGGCGTC | + |
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Preference number: 3 (lower is better) Translates to: RNINPFGVEVAC*HQPGLDPRVGV Trigger: GACGCCCACTCTGGGATCCAGTCCTGGTTGATGTCAGCATGCCACCTCCACACCAAAGGGATTTATATTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAATTGACTCAAAGTCGGGGGAAAGCTCTTaGGTAGATGCTGCTGAAATT | + |
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Preference number: 3 (lower is better) Translates to: IQIQSFTCFLKRSRIDSKSGESS*VDAAEI Trigger: AATTTCAGCAGCATCTACCAAAGAGCTTTCCCCCGA...CTTTGAGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | GACTGGATCCCAGAGTGGGCGTCACATCCTGAAAGAATCAAGGTAGGAGGGTGCTTCCAGGAGACTGGCTaGAAGGTGAGTTGGGACATC | + |
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Preference number: 4 (lower is better) Translates to: DWIPEWASHPERIKVGGCFQETG*KVSWDI Trigger: GATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAA...GCACCCTCCTACCTTGATTCTTTCAGGATGTGACGCCCACTCTGGGATCCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | GACTGGATCCCAGAGTGGGCGTCACATCCTGAAAGAATCAAGGTAGGAGGGTGCGTCCACTCATGTGGTTaGATTCCAGGAGACTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: DWIPEWASHPERIKVGGCVHSCG*IPGDWL Trigger: CAGCCAGTCTCCTGGAATCCAACCACATGAGTGGAC...GCACCCTCCTACCTTGATTCTTTCAGGATGTGACGCCCACTCTGGGATCCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR TCA 90 bp | ATGCTGCTGAAATTAGCTAGGGAGACAGTGTCTGCCTTTTACGGTGAGGTAGATCACTGCCTGCCAGATTaGGGGGCCCATCCAACCGCT | + |
|
Preference number: 4 (lower is better) Translates to: MLLKLARETVSAFYGEVDHCLPD*GAHPTA Trigger: AGCGGTTGGATGGGCCCCTCAATCTGGCAGGCAGTG...ATCTACCTCACCGTAAAAGGCAGACACTGTCTCCCTAGCTAATTTCAGCAGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | AGCAGAATTGACTCAAAGAGGTGGGGTACCAAAGGTGACACTGACATAGGGGTTGGGACATCGGGCTCCTaGATGGCTCTGCTCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SRIDSKRWGTKGDTDIGVGTSGS*MALLSC Trigger: ACAGCTGAGCAGAGCCATCCAGGAGCCCGATGTCCC...AACCCCTATGTCAGTGTCACCTTTGGTACCCCACCTCTTTGAGTCAATTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR TCA 90 bp | AGCAGAATTGACTCAAAGAGGTGGGGTACCAAAGGTGACACTGACATAGGGGTTGCACCTGTTTGGCCATaGTGGGTACCCGGTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: SRIDSKRWGTKGDTDIGVAPVWP*WVPGSL Trigger: CAGTGAACCGGGTACCCATCATGGCCAAACAGGTGC...AACCCCTATGTCAGTGTCACCTTTGGTACCCCACCTCTTTGAGTCAATTCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | GGGAAGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAGCCAGCCGTGCTGCCTaGTGCCTCTGCAGGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GKYNFIFQMQPKGHLHIQASRAA*CLCRAS Trigger: GGAGGCCCTGCAGAGGCAGCAGGCAGCACGGCTGGC...TTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | ATGCTGCTGAAATTAGCTAGGGAGACAGTGTCTGCCTTTTACGGTGAGGTAGATCCCTGGGGAACTGAGTaGCCGTGTCTCGCACTCGTA | + |
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Preference number: 4 (lower is better) Translates to: MLLKLARETVSAFYGEVDPWGTE*PCLALV Trigger: TACGAGTGCGAGACACGGGCACTCAGTTCCCCAGGG...ATCTACCTCACCGTAAAAGGCAGACACTGTCTCCCTAGCTAATTTCAGCAGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | GGGACATCTTCACATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAGCCTGAAGCTCCCCTaGGGAACTGAGTGCCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: GTSSHSNPILHLLPEKEQSLKLP*GTECPC Trigger: ACACGGGCACTCAGTTCCCCAGGGGAGCTTCAGGCT...CTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAATGTGAAGATGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | GGGACATCTTCACATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGCCACCAGGCCTCCCTTaGCTGTCACCAAGCGAAACA | + |
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Preference number: 4 (lower is better) Translates to: GTSSHSNPILHLLPEKEQPPGLP*LSPSET Trigger: TGTTTCGCTTGGTGACAGCCAAGGGAGGCCTGGTGG...CTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAATGTGAAGATGTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | ATGCTGCTGAAATTAGCTAGGGAGACAGTGTCTGCCTTTTACGGTGAGGTAGATCGCCAGACGAGGGGGTaGGATTCCACTCTCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: MLLKLARETVSAFYGEVDRQTRG*DSTLLF Trigger: AAAGAGGAGAGTGGAATCCCACCCCCTCGTCTGGCG...ATCTACCTCACCGTAAAAGGCAGACACTGTCTCCCTAGCTAATTTCAGCAGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCTTGGGCCAGCCGTGCTaGCTGCTGCCTCTGCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: STILFSRCNPRDIFTFKSLGQPC*LLPLQG Trigger: GCCCTGCAGAGGCAGCAGGCAGCACGGCTGGCCCAA...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | ATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAATTGACTCAAAGCCCTTAGGGGAGCCTTaGCACGGGGCAGGAAACTGG | + |
|
Preference number: 4 (lower is better) Translates to: IQIQSFTCFLKRSRIDSKPLGEP*HGAGNW Trigger: CCAGTTTCCTGCCCCGTGGCAAGGCTCCCCTAAGGG...CTTTGAGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | AGCAGAATTGACTCAAAGAGGTGGGGTACCAAAGGTGACACTGACATAGGGGTTGAAGCTGGCACAGGTTaGCGTCGAGCAAAGAGGATA | + |
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Preference number: 4 (lower is better) Translates to: SRIDSKRWGTKGDTDIGVEAGTG*RRAKRI Trigger: TATCCTCTTTGCTCGACGCCAACCTGTGCCAGCTTC...AACCCCTATGTCAGTGTCACCTTTGGTACCCCACCTCTTTGAGTCAATTCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | TACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCAACCCTTGGGCCAGCCGTaGTGCCTGCTGCCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YNFIFQMQPKGHLHIQIQPLGQP*CLLPLQ Trigger: CTGCAGAGGCAGCAGGCAGCACGGCTGGCCCAAGGG...TTGGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | ATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAATTGACTCAAAGGCTGATGCCACTGCCTaGCAGATTGAGGGGCCCATC | + |
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Preference number: 4 (lower is better) Translates to: IQIQSFTCFLKRSRIDSKADATA*QIEGPI Trigger: GATGGGCCCCTCAATCTGGCAGGCAGTGGCATCAGC...CTTTGAGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | ATGCTGCTGAAATTAGCTAGGGAGACAGTGTCTGCCTTTTACGGTGAGGTAGATGTAGAGGTGGAGGATTaGTTGGACCCAAGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: MLLKLARETVSAFYGEVDVEVED*LDPRKL Trigger: CAGCTTCCTTGGGTCCAACCAATCCTCCACCTCTAC...ATCTACCTCACCGTAAAAGGCAGACACTGTCTCCCTAGCTAATTTCAGCAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR TCA 90 bp | GGGAAGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAAGACTGGCTGGAAGGTaGGTTGGGACATCGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GKYNFIFQMQPKGHLHIQRLAGR*VGTSGS Trigger: GGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCT...TTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACTTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR TCA 90 bp | TACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCAAGCTCCCCTGGGGAACTaGGTGCCCGTGTCTCGCACT | + |
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Preference number: 4 (lower is better) Translates to: YNFIFQMQPKGHLHIQIQAPLGN*VPVSRT Trigger: AGTGCGAGACACGGGCACTCAGTTCCCCAGGGGAGC...TTGGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCGCCTGTTGCTGTCTATaGCAGCCTGAAGCTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: STILFSRCNPRDIFTFKSACCCL*QPEAPL Trigger: CAGGGGAGCTTCAGGCTGCCATAGACAGCAACAGGC...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR TCA 90 bp | ATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAATTGACTCAAAGGTTCATACAGCTGCTTaGACTGTTCCTCGTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: IQIQSFTCFLKRSRIDSKVHTAA*TVPRRS Trigger: GGACCTACGAGGAACAGTTCAAGCAGCTGTATGAAC...CTTTGAGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCAGGTGGAGGATTGGTTaGACCCAAGGAAGCTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: STILFSRCNPRDIFTFKSRWRIG*TQGSWH Trigger: GTGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCT...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAGTAGGTCCACTCATGTaGTTGGATTCCAGGAGACTG | + |
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Preference number: 4 (lower is better) Translates to: GKYNFIFQMQPKGHLHIQVGPLM*LDSRRL Trigger: CAGTCTCCTGGAATCCAACCACATGAGTGGACCTAC...TTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR GCA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCGGCGTACCCCTCTTCTaGATGAAGCTAAATAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: STILFSRCNPRDIFTFKSGVPLF*MKLNRS Trigger: TGACCTATTTAGCTTCATGCAGAAGAGGGGTACGCC...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS TCA 90 bp | TCGAGGCGGGGCCAGGAGCGCCCCGAGGTGTGGGCCCTGCTAAGTTaGAGAGCGGGACCGCGGTGTAAGCCTGGCGGCGGCCCTCACGCC | + |
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Preference number: 5 (lower is better) Translates to: SRRGQERPEVWALLS*RAGPRCKPGGGPHA Trigger: GGCGTGAGGGCCGCCGCCAGGCTTACACCGCGGTCCCGCTCTTCAACTTAGCAGGGCCCACACCTCGGGGCGCTCCTGGCCCCGCCTCGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CCA 90 bp | GGTAGAGGTGGAGGATTGGTTGGACCCAAGGAAGCTGGCACAGGTTaGCGTCGAGCAAAGAGGATACCCCTTAGGGGAGCCTTGCCACGG | + |
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Preference number: 5 (lower is better) Translates to: GRGGGLVGPKEAGTG*RRAKRIPLRGALPR Trigger: CCGTGGCAAGGCTCCCCTAAGGGGTATCCTCTTTGCTCGACGCCAACCTGTGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150809.3 |
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| CDS-3UTR CAA 90 bp | GACTGGATCCCAGAGTGGGCGTCACATCCTGAAAGAATCAAGGTAGGAGGGTGCCCACTGCCTGCCAGATaGAGGGGCCCATCCAACCGC | + |
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Preference number: 5 (lower is better) Translates to: DWIPEWASHPERIKVGGCPLPAR*RGPSNR Trigger: GCGGTTGGATGGGCCCCTCAATCTGGCAGGCAGTGG...GCACCCTCCTACCTTGATTCTTTCAGGATGTGACGCCCACTCTGGGATCCAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS GCA 90 bp | GACTGGCTGGAAGGTGAGTTGGGACATCGGGCTCCTGGATGGCTCTaGTCAGCTGTCTCCTCTTCTGCTAAGGGTGTCTCTCCCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: DWLEGELGHRAPGWL*SAVSSSAKGVSPSS Trigger: TGAGGAGGGAGAGACACCCTTAGCAGAAGAGGAGACAGCTGAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | AGCAGAATTGACTCAAAGAGGTGGGGTACCAAAGGTGACACTGACATAGGGGTTCAAGGGCCCCACCCCTaGGGCCAGCCGTGCTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SRIDSKRWGTKGDTDIGVQGPHP*GQPCCL Trigger: CAGGCAGCACGGCTGGCCCAAGGGGTGGGGCCCTTG...AACCCCTATGTCAGTGTCACCTTTGGTACCCCACCTCTTTGAGTCAATTCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS TCA 90 bp | GTAGGTCCACTCATGTGGTTGGATTCCAGGAGACTGGCTGGAAGGTaGGTTGGGACATCGGGCTCCTGGATGGCTCTGCTCAGCTGTCTC | + |
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Preference number: 5 (lower is better) Translates to: VGPLMWLDSRRLAGR*VGTSGSWMALLSCL Trigger: GAGACAGCTGAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACATGAGTGGACCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CCA 90 bp | GTTCCTCGTAGGTCCACTCATGTGGTTGGATTCCAGGAGACTGGCTaGAAGGTGAGTTGGGACATCGGGCTCCTGGATGGCTCTGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: VPRRSTHVVGFQETG*KVSWDIGLLDGSAQ Trigger: CTGAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACATGAGTGGACCTACGAGGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | AGCAGAATTGACTCAAAGAGGTGGGGTACCAAAGGTGACACTGACATAGGGGTTTCCCTTAGGGGAGCCTaGCCACGGGGCAGGAAACTG | + |
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Preference number: 5 (lower is better) Translates to: SRIDSKRWGTKGDTDIGVSLRGA*PRGRKL Trigger: CAGTTTCCTGCCCCGTGGCAAGGCTCCCCTAAGGGA...AACCCCTATGTCAGTGTCACCTTTGGTACCCCACCTCTTTGAGTCAATTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | ATGCTGCTGAAATTAGCTAGGGAGACAGTGTCTGCCTTTTACGGTGAGGTAGATGGAAGCTGGCACAGGTaGGCGTCGAGCAAAGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: MLLKLARETVSAFYGEVDGSWHR*ASSKED Trigger: ATCCTCTTTGCTCGACGCCAACCTGTGCCAGCTTCC...ATCTACCTCACCGTAAAAGGCAGACACTGTCTCCCTAGCTAATTTCAGCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | GGGACATCTTCACATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGCGCCACACTTTTCGGTaGATGACTTCCACCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: GTSSHSNPILHLLPEKEQRHTFR*MTSTRP Trigger: AGGCCTGGTGGAAGTCATCAACCGAAAAGTGTGGCG...CTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAATGTGAAGATGTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | ATTCAAATCCAATCCTTCACCTGCTTCCTGAAAAGGAGCAGAATTGACTCAAAGTCCACCAGGCCTCCCTaGGCTGTCACCAAGCGAAAC | + |
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Preference number: 5 (lower is better) Translates to: IQIQSFTCFLKRSRIDSKSTRPP*AVTKRN Trigger: GTTTCGCTTGGTGACAGCCAAGGGAGGCCTGGTGGA...CTTTGAGTCAATTCTGCTCCTTTTCAGGAAGCAGGTGAAGGATTGGATTTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | AGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCCTGGCTGGAAGGTGAGTaGGGACATCGGGCTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: STILFSRCNPRDIFTFKSWLEGE*GHRAPG Trigger: TCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCA...GGATTTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | GGGAAGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAGAGGTGGAGGATTGGTaGGACCCAAGGAAGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: GKYNFIFQMQPKGHLHIQEVEDW*DPRKLA Trigger: TGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCTC...TTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACTTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS-3UTR CAA 90 bp | GGGAAGTACAATTTTATTTTCCAGATGCAACCCAAGGGACATCTTCACATTCAAATCTCTAGTGCCACGTaGATACTGCTGATGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: GKYNFIFQMQPKGHLHIQISSAT*ILLMPL Trigger: CAGTGGCATCAGCAGTATCAACGTGGCACTAGAGAT...TTGAATGTGAAGATGTCCCTTGGGTTGCATCTGGAAAATAAAATTGTACTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171251.8 |
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| CDS TCA 72 bp | GGCCAGGAGCGCCCCGAGGTGTGGGCCCTGCTAAGTTaGAGAGCGGGACCGCGGTGTAAGCCTGGCGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: GQERPEVWALLS*RAGPRCKPGGG Trigger: GCCGCCGCCAGGCTTACACCGCGGTCCCGCTCTTCAACTTAGCAGGGCCCACACCTCGGGGCGCTCCTGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CAA 72 bp | CTGGAAGGGGGCCCTGTAGAGGGTAGAGGTGGAGGATaGGTTGGACCCAAGGAAGCTGGCACAGGTTGGCGT | + |
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Preference number: 6 (lower is better) Translates to: LEGGPVEGRGGG*VGPKEAGTGWR Trigger: ACGCCAACCTGTGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCTCTACCCTCTACAGGGCCCCCTTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CAA 90 bp | GGCAAGGTACTGGAAGGGGGCCCTGTAGAGGGTAGAGGTGGAGGATaGGTTGGACCCAAGGAAGCTGGCACAGGTTGGCGTCGAGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GKVLEGGPVEGRGGG*VGPKEAGTGWRRAK Trigger: CTTTGCTCGACGCCAACCTGTGCCAGCTTCCTTGGGTCCAACCAATCCTCCACCTCTACCCTCTACAGGGCCCCCTTCCAGTACCTTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CAA 72 bp | GCCACGTTGATACTGCTGATGCCACTGCCTGCCAGATaGAGGGGCCCATCCAACCGCTCTTCCCTTAGGGGA | + |
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Preference number: 6 (lower is better) Translates to: ATLILLMPLPAR*RGPSNRSSLRG Trigger: TCCCCTAAGGGAAGAGCGGTTGGATGGGCCCCTCAATCTGGCAGGCAGTGGCATCAGCAGTATCAACGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000084698.12 ENSMUST00000171251.8 |
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| CDS CAA 90 bp | ATCTCTAGTGCCACGTTGATACTGCTGATGCCACTGCCTGCCAGATaGAGGGGCCCATCCAACCGCTCTTCCCTTAGGGGAGCCTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: ISSATLILLMPLPAR*RGPSNRSSLRGALP Trigger: TGGCAAGGCTCCCCTAAGGGAAGAGCGGTTGGATGGGCCCCTCAATCTGGCAGGCAGTGGCATCAGCAGTATCAACGTGGCACTAGAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000084698.12 ENSMUST00000171251.8 |
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| CDS TCA 72 bp | CTCATGTGGTTGGATTCCAGGAGACTGGCTGGAAGGTaGGTTGGGACATCGGGCTCCTGGATGGCTCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: LMWLDSRRLAGR*VGTSGSWMALL Trigger: GAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACATGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CCA 72 bp | AGGTCCACTCATGTGGTTGGATTCCAGGAGACTGGCTaGAAGGTGAGTTGGGACATCGGGCTCCTGGATGGC | + |
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Preference number: 6 (lower is better) Translates to: RSTHVVGFQETG*KVSWDIGLLDG Trigger: GCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACATGAGTGGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CAA 72 bp | TGTGGTTGGATTCCAGGAGACTGGCTGGAAGGTGAGTaGGGACATCGGGCTCCTGGATGGCTCTGCTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: CGWIPGDWLEGE*GHRAPGWLCSA Trigger: AGCTGAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTCCAGCCAGTCTCCTGGAATCCAACCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS GCA 72 bp | GAAGGTGAGTTGGGACATCGGGCTCCTGGATGGCTCTaGTCAGCTGTCTCCTCTTCTGCTAAGGGTGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: EGELGHRAPGWL*SAVSSSAKGVS Trigger: AGAGACACCCTTAGCAGAAGAGGAGACAGCTGAGCAGAGCCATCCAGGAGCCCGATGTCCCAACTCACCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000084698.12 ENSMUST00000150809.3 ENSMUST00000171251.8 |
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| CDS CAA 72 bp | TGGAGGATTGGTTGGACCCAAGGAAGCTGGCACAGGTaGGCGTCGAGCAAAGAGGATACCAGTGTAGACCAC | + |
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Preference number: 6 (lower is better) Translates to: WRIGWTQGSWHR*ASSKEDTSVDH Trigger: GTGGTCTACACTGGTATCCTCTTTGCTCGACGCCAACCTGTGCCAGCTTCCTTGGGTCCAACCAATCCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000084698.12 ENSMUST00000171251.8 |
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