RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGEF7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031511

Ensembl transcript IDs: ENSMUST00000074856.13, ENSMUST00000098938.9, ENSMUST00000110904.2, ENSMUST00000110909.9, ENSMUST00000210012.2, ENSMUST00000210104.2, ENSMUST00000211409.2, ENSMUST00000239427.2

Found 545 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGCACGGACGGCAACCTCGGCGGTGGCAAGGACACTGGCGAACATaGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAG +
Preference number: 1 (lower is better)
Translates to: GHGRQPRRWQGHWRT*SLLPVDGGAAQQPQ
Trigger: CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTGTCCTTGCCACCGCCGAGGTTGCCGTCCGTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp AGAGCACAAACGGCCTCTAAGTGCCCACGCAGAAACCTCCACAGGTaGGTGGGTGGGCGGGGGCTGGGTCACGTCCTAGGGAAAGAGGCT +
Preference number: 1 (lower is better)
Translates to: RAQTASKCPRRNLHR*VGGRGLGHVLGKEA
Trigger: AGCCTCTTTCCCTAGGACGTGACCCAGCCCCCGCCCACCCACCCACCTGTGGAGGTTTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp TGCGGTCTCCTGTCGTGTCCCAGGAAAGTGGGGGTTGGCATGAAGTaGACAGGGCGCATGGGCAGCAGCTGGAGGAGAACAGTGGAGTTT +
Preference number: 1 (lower is better)
Translates to: CGLLSCPRKVGVGMK*TGRMGSSWRRTVEF
Trigger: AAACTCCACTGTTCTCCTCCAGCTGCTGCCCATGCGCCCTGTGCACTTCATGCCAACCCCCACTTTCCTGGGACACGACAGGAGACCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp CAGCTACTGGGGACAGACAGACAGACTCAGTGTGAGCAGCTGTGCTaGCCTGCAGCTCCAGGTCAACCCCCTTCATGCACAGCGTGTGTG +
Preference number: 1 (lower is better)
Translates to: QLLGTDRQTQCEQLC*PAAPGQPPSCTACV
Trigger: CACACACGCTGTGCATGAAGGGGGTTGACCTGGAGCTGCAGGGCAGCACAGCTGCTCACACTGAGTCTGTCTGTCTGTCCCCAGTAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp GCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTaGATCCTCAGAGAGACAAGGCGGCGTGCTGACAGCCTAACCACC +
Preference number: 1 (lower is better)
Translates to: ALGCRFSLPGEPGRH*ILRETRRRADSLTT
Trigger: GGTGGTTAGGCTGTCAGCACGCCGCCTTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp AATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCATGGAGCCTaGGCTACACACGAGTCAGACAGCTGCCACGGCATCTCTTCACCT +
Preference number: 1 (lower is better)
Translates to: NSLCPSACSRWHHGA*ATHESDSCHGISSP
Trigger: AGGTGAAGAGATGCCGTGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp TGCTCATGGCTCTCACAGCATCCTGTGGCTGTGGGACAGCCAGGCTaGAGGCAAGCCAAGCACAGTCACACACCAATGGTACCTCCCACT +
Preference number: 1 (lower is better)
Translates to: CSWLSQHPVAVGQPG*RQAKHSHTPMVPPT
Trigger: AGTGGGAGGTACCATTGGTGTGTGACTGTGCTTGGCTTGCCTGCAGCCTGGCTGTCCCACAGCCACAGGATGCTGTGAGAGCCATGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp ACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCATaGAGCCTGCGCTACACACGAGTCAGACAGCTGCCACGGCATCTC +
Preference number: 1 (lower is better)
Translates to: THKFTVPECLFPMAP*SLRYTRVRQLPRHL
Trigger: GAGATGCCGTGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp GATTCCCCCGCATCCCTTACAGAACACAGAGGACTTAGGAGTTGGTaGGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGAC +
Preference number: 1 (lower is better)
Translates to: DSPASLTEHRGLRSW*EAPCAVGIKAPRAD
Trigger: GTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTCCTCTGTGTTCTGTAAGGGATGCGGGGGAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp GAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATaGCACCATGGAGCCTGCGCTACACACGAGTCAGACAGCTGCCAC +
Preference number: 1 (lower is better)
Translates to: EQRHTNSLCPSACSR*HHGACATHESDSCH
Trigger: GTGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp AGCAATGGGTGGACACAGATTCCAGACTCTGCTCTCAACACCCAGTaGCACCAGCCCTGGTGTGCATCAGCCCGGTGTTCTGCACTGTCA +
Preference number: 1 (lower is better)
Translates to: SNGWTQIPDSALNTQ*HQPWCASARCSALS
Trigger: TGACAGTGCAGAACACCGGGCTGATGCACACCAGGGCTGGTGCCACTGGGTGTTGAGAGCAGAGTCTGGAATCTGTGTCCACCCATTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp GAGTACAGGGCTTCGGGAAATAACTTCACTGCCACAAGGTGCTCATaGCTCTCACAGCATCCTGTGGCTGTGGGACAGCCAGGCTGCAGG +
Preference number: 1 (lower is better)
Translates to: EYRASGNNFTATRCS*LSQHPVAVGQPGCR
Trigger: CCTGCAGCCTGGCTGTCCCACAGCCACAGGATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCTGTACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 90 bp GGTGGGAGGCTCTGGTGGATCCTGACAGACACAACCCATAGACACTaGAACCAGCTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCT +
Preference number: 1 (lower is better)
Translates to: GGRLWWILTDTTHRH*NQLECGRRREHKRP
Trigger: AGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAGCTGGTTGCAGTGTCTATGGGTTGTGTCTGTCAGGATCCACCAGAGCCTCCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp GGCGCATGGGCAGCAGCTGGAGGAGAACAGTGGAGTTTCGGACGCTaGTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTA +
Preference number: 1 (lower is better)
Translates to: GAWAAAGGEQWSFGR*YTAAWFRTESASHL
Trigger: TAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGCAGCGTCCGAAACTCCACTGTTCTCCTCCAGCTGCTGCCCATGCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp TGTGCTGAGTACAGGGCTTCGGGAAATAACTTCACTGCCACAAGGTaGTCATGGCTCTCACAGCATCCTGTGGCTGTGGGACAGCCAGGC +
Preference number: 1 (lower is better)
Translates to: CAEYRASGNNFTATR*SWLSQHPVAVGQPG
Trigger: GCCTGGCTGTCCCACAGCCACAGGATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCTGTACTCAGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp ATTGCTTTATTCTCGCTCAGAGGGTTAGGAGGGCTTTCAGTGGCCTaGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGCTCCTGGAT +
Preference number: 1 (lower is better)
Translates to: IALFSLRGLGGLSVA*TTLTAARGRAELLD
Trigger: ATCCAGGAGCTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCCTAACCCTCTGAGCGAGAATAAAGCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp ACCTCACAGCCGTGCCACACACAGGAAAAGGCACAGAGCAATGGGTaGACACAGATTCCAGACTCTGCTCTCAACACCCAGTGGCACCAG +
Preference number: 1 (lower is better)
Translates to: TSQPCHTQEKAQSNG*TQIPDSALNTQWHQ
Trigger: CTGGTGCCACTGGGTGTTGAGAGCAGAGTCTGGAATCTGTGTCCACCCATTGCTCTGTGCCTTTTCCTGTGTGTGGCACGGCTGTGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp GCCGGTTTTAAAAAGAACTGCTCTTGGGTGCAGATTCTCGCTCCCTaGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAGGCGGCG +
Preference number: 1 (lower is better)
Translates to: AGFKKNCSWVQILAP*RAWKTLDPQRDKAA
Trigger: CGCCGCCTTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp CATGAATACTCATGGAACACTCCAAGCGAATCATTAAGGCAGGTCTaGAAGGAATTGTCCTGGGGCACGGACGGCAACCTCGGCGGTGGC +
Preference number: 1 (lower is better)
Translates to: HEYSWNTPSESLRQV*KELSWGTDGNLGGG
Trigger: GCCACCGCCGAGGTTGCCGTCCGTGCCCCAGGACAATTCCTTTCAGACCTGCCTTAATGATTCGCTTGGAGTGTTCCATGAGTATTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp CAAGGACTAGGGGTCAGAGGTCATGGCCACCAGAGCTCCATGCCCTaGAGGATGGAAAGAACATTATTCCCTATGGACACTGTGGCACCG +
Preference number: 1 (lower is better)
Translates to: QGLGVRGHGHQSSMP*RMERTLFPMDTVAP
Trigger: CGGTGCCACAGTGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCCTAGTCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 90 bp TGGGTGTGTACACCAGGGCCGGTTTTAAAAAGAACTGCTCTTGGGTaGAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTC +
Preference number: 1 (lower is better)
Translates to: WVCTPGPVLKRTALG*RFSLPGEPGRHWIL
Trigger: GAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGCCCTGGTGTACACACCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp GCCTCAACAGAAATTGTCACCCAAATGGCTCTTGACTGGGACAAATaGGCAAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCAC +
Preference number: 1 (lower is better)
Translates to: ASTEIVTQMALDWDK*ARANCQNQLSSADH
Trigger: GTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTTGCTCATTTGTCCCAGTCAAGAGCCATTTGGGTGACAATTTCTGTTGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTaGCTGTTCCCGATGGCACCATGGAGCCTGCGCTACACACGAGTC +
Preference number: 1 (lower is better)
Translates to: ILQLRTETHKFTVPE*LFPMAPWSLRYTRV
Trigger: GACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 90 bp GAGAGAGAAGTGGGTGTGTACACCAGGGCCGGTTTTAAAAAGAACTaGTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACA +
Preference number: 1 (lower is better)
Translates to: EREVGVYTRAGFKKN*SWVQILAPWRAWKT
Trigger: TGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGCCCTGGTGTACACACCCACTTCTCTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp GAAGTGGGTGTGTACACCAGGGCCGGTTTTAAAAAGAACTGCTCTTaGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGAT +
Preference number: 1 (lower is better)
Translates to: EVGVYTRAGFKKNCS*VQILAPWRAWKTLD
Trigger: ATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGCCCTGGTGTACACACCCACTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp GCTGGAGGAGAACAGTGGAGTTTCGGACGCTGCTACACCGCAGCATaGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGG +
Preference number: 1 (lower is better)
Translates to: AGGEQWSFGRCYTAA*FRTESASHLHDRKW
Trigger: CCATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGCAGCGTCCGAAACTCCACTGTTCTCCTCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp TTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATaGAGAAGTGGCAGATATGTGCACACTCAGCCCAGACCTCAGTGT +
Preference number: 1 (lower is better)
Translates to: FNSSPEAKGLWSVTA*RSGRYVHTQPRPQC
Trigger: ACACTGAGGTCTGGGCTGAGTGTGCACATATCTGCCACTTCTCCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp TCACATGTAGCTACTTCAGCAACAGCCTCATTGCTGCTGCTCGCCTaGTGGAGACCACCTTCCTTAGTCCTAAATGTCACTGTGCTGGAA +
Preference number: 1 (lower is better)
Translates to: SHVATSATASLLLLA*WRPPSLVLNVTVLE
Trigger: TTCCAGCACAGTGACATTTAGGACTAAGGAAGGTGGTCTCCATCAGGCGAGCAGCAGCAATGAGGCTGTTGCTGAAGTAGCTACATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp AAAAATAAGGAGTTTAATAATTGCAAGGGTGTAGCACACACACACTaGGCAGTCGACCCCGGTGCGGTCTCCTGTCGTGTCCCAGGAAAG +
Preference number: 1 (lower is better)
Translates to: KNKEFNNCKGVAHTH*AVDPGAVSCRVPGK
Trigger: CTTTCCTGGGACACGACAGGAGACCGCACCGGGGTCGACTGCTCAGTGTGTGTGTGCTACACCCTTGCAATTATTAAACTCCTTATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp TTCCACAGTGTGGGCCTCAACAGAAATTGTCACCCAAATGGCTCTTaGCTGGGACAAATGAGCAAGGGCAAACTGTCAGAACCAGCTCAG +
Preference number: 1 (lower is better)
Translates to: FHSVGLNRNCHPNGS*LGQMSKGKLSEPAQ
Trigger: CTGAGCTGGTTCTGACAGTTTGCCCTTGCTCATTTGTCCCAGTCAAGAGCCATTTGGGTGACAATTTCTGTTGAGGCCCACACTGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 90 bp CTGTTTCCAGGATGTTCTGTAGCACCACGTTGTAATAGCTCTTGTTaGTGGCAGTCGTATCGAACCCTTTGGGAGGGCTCTTCAAGGTCC +
Preference number: 1 (lower is better)
Translates to: LFPGCSVAPRCNSSC*WQSYRTLWEGSSRS
Trigger: GGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAACAAGAGCTATTACAACGTGGTGCTACAGAACATCCTGGAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 90 bp CCAAAGGACTCTGGTCAGTCACTGCATGGAGAAGTGGCAGATATGTaGACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCT +
Preference number: 1 (lower is better)
Translates to: PKDSGQSLHGEVADM*TLSPDLSVYNSHVA
Trigger: AGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCACATATCTGCCACTTCTCCATGCAGTGACTGACCAGAGTCCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp GCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATaGCTTGATTCCCCCGCATCCCTTACAGAACACAGAGGACTTAGG +
Preference number: 1 (lower is better)
Translates to: AWFRTESASHLHDRK*LDSPASLTEHRGLR
Trigger: CCTAAGTCCTCTGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 90 bp ACTGTATCCACTAGCTTGGCAACAAGGACTAGGGGTCAGAGGTCATaGCCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATT +
Preference number: 1 (lower is better)
Translates to: TVSTSLATRTRGQRS*PPELHALKDGKNII
Trigger: AATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCCTAGTCCTTGTTGCCAAGCTAGTGGATACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp GCTGTTGTTCCACAGTGTGGGCCTCAACAGAAATTGTCACCCAAATaGCTCTTGACTGGGACAAATGAGCAAGGGCAAACTGTCAGAACC +
Preference number: 1 (lower is better)
Translates to: AVVPQCGPQQKLSPK*LLTGTNEQGQTVRT
Trigger: GGTTCTGACAGTTTGCCCTTGCTCATTTGTCCCAGTCAAGAGCCATTTGGGTGACAATTTCTGTTGAGGCCCACACTGTGGAACAACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp TGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTaGACTTGCCACCTCCCTCCAACAGGCAGCAGTTTAAATTCAGTC +
Preference number: 1 (lower is better)
Translates to: CKKKLPVGKSPSGTH*TCHLPPTGSSLNSV
Trigger: GACTGAATTTAAACTGCTGCCTGTTGGAGGGAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 90 bp TGGATGACATCACCCTTTGAGAAGGAGAGTTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCTCGTACTACCAGTTGGCTGTTGGTG +
Preference number: 1 (lower is better)
Translates to: WMTSPFEKESSSSLV*WKLNLARTTSWLLV
Trigger: CACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGGTGATGTCATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR CCA 90 bp ACATTCAAAACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTGTaGGCCTCAACAGAAATTGTCACCCAAATGGCTCTTGACTGGGAC +
Preference number: 1 (lower is better)
Translates to: TFKTNAKRLSCCSTV*ASTEIVTQMALDWD
Trigger: GTCCCAGTCAAGAGCCATTTGGGTGACAATTTCTGTTGAGGCCCACACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp ATGACATCACCCTTTGAGAAGGAGAGTTCATCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGTACTACCAGTTGGCTGTTGGTGTTA +
Preference number: 1 (lower is better)
Translates to: MTSPFEKESSSSLVC*KLNLARTTSWLLVL
Trigger: TAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGGTGATGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR TCA 90 bp CTTCAGTGTTTAAAGACAAAACACCTTTCTAAGGGAAAGTATCTCTaGCTTGAAAACAACCTCTTTGGAGGAAAGAAGGGACAGCTAAGC +
Preference number: 1 (lower is better)
Translates to: LQCLKTKHLSKGKYL*LENNLFGGKKGQLS
Trigger: GCTTAGCTGTCCCTTCTTTCCTCCAAAGAGGTTGTTTTCAAGTCAGAGATACTTTCCCTTAGAAAGGTGTTTTGTCTTTAAACACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 90 bp CTATTGGAAATTAATACTGGGTGCAAGTTTGAAAGGCTTGCTCCTTaGCTTTCATATAAAAATACAAACTCTTCAGGGGCAAAGCTGCTG +
Preference number: 1 (lower is better)
Translates to: LLEINTGCKFERLAP*LSYKNTNSSGAKLL
Trigger: CAGCAGCTTTGCCCCTGAAGAGTTTGTATTTTTATATGAAAGTCAAGGAGCAAGCCTTTCAAACTTGCACCCAGTATTAATTTCCAATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 90 bp ATTCCCATTTGCTATTTGGCTGAATCCATACAACCTTATTCCTATTaGAAATTAATACTGGGTGCAAGTTTGAAAGGCTTGCTCCTTGAC +
Preference number: 1 (lower is better)
Translates to: IPICYLAESIQPYSY*KLILGASLKGLLLD
Trigger: GTCAAGGAGCAAGCCTTTCAAACTTGCACCCAGTATTAATTTCCAATAGGAATAAGGTTGTATGGATTCAGCCAAATAGCAAATGGGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCACCTCCACAGGTGGGTaGGTGGGCGGGGGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWITSTGG*VGGGWV
Trigger: GACCCAGCCCCCGCCCACCCACCCACCTGTGGAGGT...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCACTGGACAACGCTGACTaGGGCCAGAGGCAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: LVRGALCCWYQSSPRRHALDNAD*GQRQSR
Trigger: TCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAG...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAGGGCCTGCCTGGGCCTaGCCTGGGGAGGCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGGPAWA*PGEAAE
Trigger: CTCTGCTGCCTCCCCAGGCCAGGCCCAGGCAGGCCC...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAGACTGCAGCTCCTTGGACTCGAACGTAGTTGCTaGGGAACCAGCCGGTCCTGC +
Preference number: 2 (lower is better)
Translates to: TGLQWPQVGGQHRLQLLGLERSC*GTSRSC
Trigger: GCAGGACCGGCTGGTTCCCCAGCAACTACGTTCGAG...TCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR GCA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCACACGAGTCAGACAGCTaGCACGGCATCTCTTCACCT +
Preference number: 2 (lower is better)
Translates to: RAELLDENSLQPNPARPAHESDS*HGISSP
Trigger: AGGTGAAGAGATGCCGTGGCAGCTGTCTGACTCGTG...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAAAGAAGCAGGGCCGCTTaGCCAGGCCACCAGCCTTCC +
Preference number: 2 (lower is better)
Translates to: LECGRRREHKRPLSAHAERSRAA*PGHQPS
Trigger: GGAAGGCTGGTGGCCTGGGCAAGCGGCCCTGCTTCT...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAAGAAGCAGGGCCGCTTaGCCAGGCCACCAGCCTTCC +
Preference number: 2 (lower is better)
Translates to: ADSRSLESLEDTGSSERQRSRAA*PGHQPS
Trigger: GGAAGGCTGGTGGCCTGGGCAAGCGGCCCTGCTTCT...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACTGGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAGACTGCAGCTCCTTGGATCTCTCGAACGTAGTTaGTGGGGAACCAGCCGGTCC +
Preference number: 2 (lower is better)
Translates to: TGLQWPQVGGQHRLQLLGSLERS*WGTSRS
Trigger: GGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGA...TCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR GCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCTGGATGAAAACAGCCTaGAGCCAAACCCTGCCCGGC +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPWMKTA*SQTLPG
Trigger: GCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCA...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGGTGGGACAGCCAGGCTaGAGGCAAGCCAAGCACAGT +
Preference number: 2 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSVGQPG*RQAKHS
Trigger: ACTGTGCTTGGCTTGCCTGCAGCCTGGCTGTCCCAC...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCGGTGGGAGGCTCTGGTaGATCCTGACAGACACAACC +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPGGRLW*ILTDTT
Trigger: GGTTGTGTCTGTCAGGATCCACCAGAGCCTCCCACC...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGGCTCTCAACACCCAGTaGCACCAGCCCTGGTGTGCA +
Preference number: 2 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSALNTQ*HQPWCA
Trigger: TGCACACCAGGGCTGGTGCCACTGGGTGTTGAGAGC...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp GACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACCTCTCACAGCATCCTGTaGCTGTGGGACAGCCAGGCT +
Preference number: 2 (lower is better)
Translates to: DRNTVGPPTEGPRWLGPTSHSIL*LWDSQA
Trigger: AGCCTGGCTGTCCCACAGCCACAGGATGCTGTGAGA...GGTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR TCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTTGCTGCTGCTCGCCTaGTGGAGACCACCTTCCTTA +
Preference number: 2 (lower is better)
Translates to: DLGVGERRPVLLVSKLPALLLLA*WRPPSL
Trigger: TAAGGAAGGTGGTCTCCATCAGGCGAGCAGCAGCAA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCGCAGAGCAGAGCTCCTaGATGAAAACAGCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPAEQSS*MKTACS
Trigger: GCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCTGC...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGCCCCTGTGCCAGCAGTaGAGTTGCAAGGAGTGTTGT +
Preference number: 2 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQPLCQQ*SCKECC
Trigger: ACAACACTCCTTGCAACTCCACTGCTGGCACAGGGG...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCTGTGGCCAGAAAGGCTaGGAAGGAAATCCTAGCAGG +
Preference number: 2 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPCGQKG*EGNPSR
Trigger: CCTGCTAGGATTTCCTTCTCAGCCTTTCTGGCCACA...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCAAAGGAGTGTTGTTCCTaGGTTGAGACCTGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAKECCS*VETCCD
Trigger: GTCACAGCAGGTCTCAACTCAGGAACAACACTCCTT...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCACGAGTCAGACAGCTaGCACGGCATCTCTTCACCT +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIHESDS*HGISSP
Trigger: AGGTGAAGAGATGCCGTGGCAGCTGTCTGACTCGTG...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp TCAGTTAGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGTGTGAGCAGCTGTGCTaGCCTGCAGCTCCAGGTCAA +
Preference number: 2 (lower is better)
Translates to: SVRQEHCWATYRRPEMAWCEQLC*PAAPGQ
Trigger: TTGACCTGGAGCTGCAGGGCAGCACAGCTGCTCACA...CCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCTAACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCATGGTCAGTCACTGCATaGAGAAGTGGCAGATATGTG +
Preference number: 2 (lower is better)
Translates to: RAELLDENSLQPNPARPAWSVTA*RSGRYV
Trigger: CACATATCTGCCACTTCTCCATGCAGTGACTGACCA...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCGCAGAGCAGAGCTCCTaGATGAAAACAGCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIAEQSS*MKTACS
Trigger: GCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCTGC...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACAGAAACCTCCACAGGTaGGTGGGTGGGCGGGGGCTG +
Preference number: 2 (lower is better)
Translates to: NTLPFAAVSSGSAECLENRNLHR*VGGRGL
Trigger: CAGCCCCCGCCCACCCACCCACCTGTGGAGGTTTCT...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CAA 90 bp GGCCCCTGTGCCAGCAGTGGAGTTGCAAGGAGTGTTGTTCCTGAGTaGAGACCTGCTGTGACAGCAAACACACTGCCTTTTGCTGCAGTG +
Preference number: 2 (lower is better)
Translates to: GPCASSGVARSVVPE*RPAVTANTLPFAAV
Trigger: CACTGCAGCAAAAGGCAGTGTGTTTGCTGTCACAGCAGGTCTCAACTCAGGAACAACACTCCTTGCAACTCCACTGCTGGCACAGGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCAGCAGAGCTCCTGGATaGAAACAGCCTGCAGCCAAA +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWISRAPG*KQPAAK
Trigger: TTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCT...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGAAGGAGTGTTGTTCCTaGGTTGAGACCTGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQKECCS*VETCCD
Trigger: GTCACAGCAGGTCTCAACTCAGGAACAACACTCCTT...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCTCTGGGTCAGCAGAGTaGTTGGAAAACAGGGCTTAC +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPSGSAE*LENRAY
Trigger: GTAAGCCCTGTTTTCCAAGCACTCTGCTGACCCAGA...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTTTCACTGCCACAAGGTaGTCATGGCTCTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLFTATR*SWLSQH
Trigger: ATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAA...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp AGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACCAGACTTCCAGACTGTaGTGTGCTGAGTACAGGGCT +
Preference number: 2 (lower is better)
Translates to: RQEHCWATYRRPEMAWTYQTSRL*CAEYRA
Trigger: AGCCCTGTACTCAGCACAGCACAGTCTGGAAGTCTG...GTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTGGTCAGTCACTGCATaGAGAAGTGGCAGATATGTG +
Preference number: 2 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPWSVTA*RSGRYV
Trigger: CACATATCTGCCACTTCTCCATGCAGTGACTGACCA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAACCAGCTAGAGTGTaGCAGAAGGAGAGAGCACAA +
Preference number: 2 (lower is better)
Translates to: DLGVGERRPVLLVSKLPAQPARV*QKERAQ
Trigger: TTGTGCTCTCTCCTTCTGCCACACTCTAGCTGGTTG...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCAACCAGCTAGAGTGTaGCAGAAGGAGAGAGCACAA +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPQPARV*QKERAQ
Trigger: TTGTGCTCTCTCCTTCTGCCACACTCTAGCTGGTTG...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCAGGTCAGCAGAGTGCTTaGAAAACAGGGCTTACCAAA +
Preference number: 2 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAGQQSA*KTGLTK
Trigger: TTTGGTAAGCCCTGTTTTCCAAGCACTCTGCTGACC...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp GAGGGCTCGTCTCCCAGGTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTAAAGGCACAGAGCAATaGGTGGACACAGATTCCAGA +
Preference number: 2 (lower is better)
Translates to: EGSSPRSPCGNMLRLPDCKGTEQ*VDTDSR
Trigger: TCTGGAATCTGTGTCCACCCATTGCTCTGTGCCTTT...ACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGAGACGAGCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp GACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACCCTGTATCCACTAGCTTaGCAACAAGGACTAGGGGTC +
Preference number: 2 (lower is better)
Translates to: DRNTVGPPTEGPRWLGPTLYPLA*QQGLGV
Trigger: GACCCCTAGTCCTTGTTGCCAAGCTAGTGGATACAG...GGTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGATGGATGAAAACAGCCTaGAGCCAAACCCTGCCCGGC +
Preference number: 2 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGWMKTA*SQTLPG
Trigger: GCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCA...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCTGGACAACGCTGACTaGGGCCAGAGGCAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMLDNAD*GQRQSR
Trigger: TCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGAACCCCAGGCCCCTGTaGCAGCAGTGGAGTTGCAAG +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMNPRPL*QQWSCK
Trigger: CTTGCAACTCCACTGCTGGCACAGGGGCCTGGGGTT...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCAACTTCAGATCCCTGTaGCCAGAAAGGCTGAGAAGG +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWINFRSL*PERLRR
Trigger: CCTTCTCAGCCTTTCTGGCCACAGGGATCTGAAGTT...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAGCTCCCTGGAGAGCCTaGAAGACACTGGATCCTCAG +
Preference number: 2 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGAPWRA*KTLDPQ
Trigger: CTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGC...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCGCAGGAGAGAGAAGTaGGTGTGTACACCAGGGCCG +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMRRREK*VCTPGP
Trigger: CGGCCCTGGTGTACACACCCACTTCTCTCTCCTGCG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAAAGGAGTGTTGTTCCTaGGTTGAGACCTGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: ADSRSLESLEDTGSSERQKECCS*VETCCD
Trigger: GTCACAGCAGGTCTCAACTCAGGAACAACACTCCTT...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCATGTCCAGGAACTGCTaGTCTTCAGCCTATGAGAAT +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPMSRNC*SSAYEN
Trigger: ATTCTCATAGGCTGAAGAGCAGCAGTTCCTGGACAT...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGAGCCATAGCCGAGACTaGAATACTGCAGTTAAGAAC +
Preference number: 2 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQSHSRD*NTAVKN
Trigger: GTTCTTAACTGCAGTATTCCAGTCTCGGCTATGGCT...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGGTGGGAGGCTCTGGTaGATCCTGACAGACACAACC +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMGGRLW*ILTDTT
Trigger: GGTTGTGTCTGTCAGGATCCACCAGAGCCTCCCACC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCGGTCAGCAGAGTGCTTaGAAAACAGGGCTTACCAAA +
Preference number: 2 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIGQQSA*KTGLTK
Trigger: TTTGGTAAGCCCTGTTTTCCAAGCACTCTGCTGACC...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp GGAGGGCTCTTCAAGGTCCCTGATTTGGGTGACACGGGCTTCTCACTTGGCTTGGATGACATCACCCTTTaGGAAGGAGAGTTCATCTTC +
Preference number: 2 (lower is better)
Translates to: GGLFKVPDLGDTGFSLGLDDITL*EGEFIF
Trigger: GAAGATGAACTCTCCTTCTCAAAGGGTGATGTCATC...CAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGACCTTGAAGAGCCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR GCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAACTCTGGTCAGTCACTaGATGGAGAAGTGGCAGATA +
Preference number: 2 (lower is better)
Translates to: ADSRSLESLEDTGSSERQTLVSH*MEKWQI
Trigger: TATCTGCCACTTCTCCATGCAGTGACTGACCAGAGT...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCACGAGTCAGACAGCTaGCACGGCATCTCTTCACCT +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMHESDS*HGISSP
Trigger: AGGTGAAGAGATGCCGTGGCAGCTGTCTGACTCGTG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCCCAGTAGCACACATTaGTCTTCAGTGTTTAAAGAC +
Preference number: 2 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPPSSTH*SSVFKD
Trigger: GTCTTTAAACACTGAAGAGCAATGTGTGCTACTGGG...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
52% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp GGACCAGCTCCCAGGAGAGGGAGCAAAGGGGTCAAAATACTGTATCCACTAGCTACAGATTCCAGACTCTaGTCTCAACACCCAGTGGCA +
Preference number: 2 (lower is better)
Translates to: GPAPRRGSKGVKILYPLATDSRL*SQHPVA
Trigger: TGCCACTGGGTGTTGAGAGCAGAGTCTGGAATCTGT...AGCTAGTGGATACAGTATTTTGACCCCTTTGCTCCCTCTCCTGGGAGCTGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp CCTTGGAATACTCATGCTCTGTTTCCAGGATGTTCTGTAGCACCACGTTGTAATGGAACCAGCCGGTCCTaGCATTGTGTGTGCCCTCCC +
Preference number: 2 (lower is better)
Translates to: PWNTHALFPGCSVAPRCNGTSRS*HCVCPP
Trigger: GGGAGGGCACACACAATGGCAGGACCGGCTGGTTCC...ATTACAACGTGGTGCTACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR CCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCAACTTCAGATCCCTGTaGCCAGAAAGGCTGAGAAGG +
Preference number: 2 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTNFRSL*PERLRR
Trigger: CCTTCTCAGCCTTTCTGGCCACAGGGATCTGAAGTT...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp AGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACTGTTGTTCCACAGTGTaGGCCTCAACAGAAATTGTC +
Preference number: 2 (lower is better)
Translates to: RQEHCWATYRRPEMAWTYCCSTV*ASTEIV
Trigger: GACAATTTCTGTTGAGGCCCACACTGTGGAACAACA...GTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp GCAGTCGTATCGAACCCTTTGGGAGGGCTCTTCAAGGTCCCTGATTTGGGTGACTCCACTCGTGTGACATaGATGACATCACCCTTTGAG +
Preference number: 2 (lower is better)
Translates to: AVVSNPLGGLFKVPDLGDSTRVT*MTSPFE
Trigger: CTCAAAGGGTGATGTCATCCATGTCACACGAGTGGA...GTCACCCAAATCAGGGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR TCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCATTGCTGCTGCTCGCCTaGTGGAGACCACCTTCCTTA +
Preference number: 2 (lower is better)
Translates to: CTLSPDLSVYNSHVATSALLLLA*WRPPSL
Trigger: TAAGGAAGGTGGTCTCCATCAGGCGAGCAGCAGCAA...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAATGTCCAGGAACTGCTaGTCTTCAGCCTATGAGAAT +
Preference number: 2 (lower is better)
Translates to: ADSRSLESLEDTGSSERQMSRNC*SSAYEN
Trigger: ATTCTCATAGGCTGAAGAGCAGCAGTTCCTGGACAT...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGCCATGTCCAGGAACTaGTGCTCTTCAGCCTATGAG +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMAMSRN*CSSAYE
Trigger: CTCATAGGCTGAAGAGCAGCAGTTCCTGGACATGGC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCACTCTGGTCAGTCACTaGATGGAGAAGTGGCAGATA +
Preference number: 2 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTTLVSH*MEKWQI
Trigger: TATCTGCCACTTCTCCATGCAGTGACTGACCAGAGT...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAACAACCCATAGACACTaGAACCAGCTAGAGTGTGGC +
Preference number: 2 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGTTHRH*NQLECG
Trigger: GCCACACTCTAGCTGGTTGCAGTGTCTATGGGTTGT...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp GGACCAGCTCCCAGGAGAGGGAGCAAAGGGGTCAAAATACTGTATCCACTAGCTGAAAAAGCTCCCTGTTaGGAAAAGCCCATCAGGTAC +
Preference number: 2 (lower is better)
Translates to: GPAPRRGSKGVKILYPLAEKAPC*EKPIRY
Trigger: GTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTC...AGCTAGTGGATACAGTATTTTGACCCCTTTGCTCCCTCTCCTGGGAGCTGGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 90 bp AAGGGAAACAGTTGCTACATGGAGCTTGTAAGAAAAAGCTCCCTGTaGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCCCTC +
Preference number: 2 (lower is better)
Translates to: KGNSCYMELVRKSSL*GKAHQVLTGLATSL
Trigger: GAGGGAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCCATGTAGCAACTGTTTCCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAAACACACTGCCTTTTaGTGCAGTGTCTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGKHTAF*CSVFWV
Trigger: GACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTT...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTGCAGCTGTGCTGCCCTaGAGCTCCAGGTCAACCCCC +
Preference number: 2 (lower is better)
Translates to: LMSDIQNKRKKVELLFHSAAVLP*SSRSTP
Trigger: GGGGGTTGACCTGGAGCTGCAGGGCAGCACAGCTGC...ACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp GGAGGGCTCTTCAAGGTCCCTGATTTGGGTGACACGGGCTTCTCACTTGGCTTGTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCT +
Preference number: 2 (lower is better)
Translates to: GGLFKVPDLGDTGFSLGLSSSLV*WKLNLA
Trigger: AGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGA...CAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGACCTTGAAGAGCCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR CCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCAACCAGCTAGAGTGTaGCAGAAGGAGAGAGCACAA +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMQPARV*QKERAQ
Trigger: TTGTGCTCTCTCCTTCTGCCACACTCTAGCTGGTTG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAAAAAGAACTGCTCTTaGGTGCAGATTCTCGCTCCC +
Preference number: 2 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGKKNCS*VQILAP
Trigger: GGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTT...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACCAGACTGTGCTGTGCTaGGTACAGGGCTTCGGGAAA +
Preference number: 2 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNQTVLC*VQGFGK
Trigger: TTTCCCGAAGCCCTGTACTCAGCACAGCACAGTCTG...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAATGTCCAGGAACTGCTaGTCTTCAGCCTATGAGAAT +
Preference number: 2 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGMSRNC*SSAYEN
Trigger: ATTCTCATAGGCTGAAGAGCAGCAGTTCCTGGACAT...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCGCCATGTCCAGGAACTaGTGCTCTTCAGCCTATGAG +
Preference number: 2 (lower is better)
Translates to: ILQLRTETHKFTVPECLFAMSRN*CSSAYE
Trigger: CTCATAGGCTGAAGAGCAGCAGTTCCTGGACATGGC...GAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGAAACACACTGCCTTTTaGTGCAGTGTCTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMKHTAF*CSVFWV
Trigger: GACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTT...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACCTCACCTCACAGCCGTaGCACACACAGGAAAAGGCA +
Preference number: 2 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNLTSQP*HTQEKA
Trigger: TGCCTTTTCCTGTGTGTGGCACGGCTGTGAGGTGAG...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACAAAAAAGAACTGCTCTTaGGTGCAGATTCTCGCTCCC +
Preference number: 2 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTKKNCS*VQILAP
Trigger: GGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTT...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp AGGGCTTCGGGAAATAACTTCACTGCCACAAGGTGCTCATGGCTCTCACAGCATTGGTTCAGGGAAGTATaGTGCAGTGGTGAATGTCTA +
Preference number: 2 (lower is better)
Translates to: RASGNNFTATRCSWLSQHWFREV*CSGECL
Trigger: TAGACATTCACCACTGCACCATACTTCCCTGAACCA...ATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp TTCAAGGTCCCTGATTTGGGTGACACGGGCTTCTCACTTGGCTTGATCTCTCGACTACCAGTTGGCTGTTaGTGTTATCAGTCATGTCCT +
Preference number: 2 (lower is better)
Translates to: FKVPDLGDTGFSLGLISRLPVGC*CYQSCP
Trigger: AGGACATGACTGATAACACCAACAGCCAACTGGTAG...TCGAGAGATCAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGACCTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR TCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTTTGCTGCTGCTCGCCTaGTGGAGACCACCTTCCTTA +
Preference number: 2 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTLLLLA*WRPPSL
Trigger: TAAGGAAGGTGGTCTCCATCAGGCGAGCAGCAGCAA...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR TCA 90 bp AGCACAGACTGCAGCTCCTTGGAATACTCATGCTCTGTTTCCAGGATGTTCTGTTTATCAGTCATGTCCTaGGGGCTGGATGTCAAAGCA +
Preference number: 2 (lower is better)
Translates to: STDCSSLEYSCSVSRMFCLSVMS*GLDVKA
Trigger: TGCTTTGACATCCAGCCCTCAGGACATGACTGATAA...ACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR GCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCATCTCTTCACCTTTCTaGTTCCAACACTTCACAAAC +
Preference number: 2 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTISSPF*FQHFTN
Trigger: GTTTGTGAAGTGTTGGAAGCAGAAAGGTGAAGAGAT...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR GCA 90 bp CAGAGCTGCAGAAATGTTAGGTGCTATCAGCATGACTACAGTTCCACAAATGTAACGCTGTGTCCCCTCTaGTACATGAGGACCATCTCC +
Preference number: 2 (lower is better)
Translates to: QSCRNVRCYQHDYSSTNVTLCPL*YMRTIS
Trigger: GGAGATGGTCCTCATGTAGCAGAGGGGACACAGCGT...TACATTTGTGGAACTGTAGTCATGCTGATAGCACCTAACATTTCTGCAGCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 90 bp ATCTTCATTGGTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTaGGCTGTTGGTGTTATCAGTCATGTCCTGAGGGCTGGATGTCAA +
Preference number: 2 (lower is better)
Translates to: IFIGLLEVKLGSYYQ*AVGVISHVLRAGCQ
Trigger: TTGACATCCAGCCCTCAGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR TCA 90 bp CAACAGAGCCGCCTCATCACTAAATACAGACGGTTTGTGTTTGTTTTGTTTTTCGCTGTCTGCTCTAACTaGGGCAGCCTCGCATTCAGT +
Preference number: 2 (lower is better)
Translates to: QQSRLITKYRRFVFVLFFAVCSN*GSLAFS
Trigger: ACTGAATGCGAGGCTGCCTCAGTTAGAGCAGACAGC...GAAAAACAAAACAAACACAAACCGTCTGTATTTAGTGATGAGGCGGCTCTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR TCA 90 bp CAGACTGCAGCTCCTTGGAATACTCATGCTCTGTTTCCAGGATGTTCTGTAGCATGTAATAGCTCTTGTTaGTGGCAGTCGTATCGAACC +
Preference number: 2 (lower is better)
Translates to: QTAAPWNTHALFPGCSVACNSSC*WQSYRT
Trigger: GGTTCGATACGACTGCCATCAACAAGAGCTATTACA...TGCTACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR GCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAATCTCTTCACCTTTCTaGTTCCAACACTTCACAAAC +
Preference number: 2 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGISSPF*FQHFTN
Trigger: GTTTGTGAAGTGTTGGAAGCAGAAAGGTGAAGAGAT...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp TCAGTTAGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGCAACCTTATTCCTATTaGAAATTAATACTGGGTGCA +
Preference number: 2 (lower is better)
Translates to: SVRQEHCWATYRRPEMAWQPYSY*KLILGA
Trigger: TGCACCCAGTATTAATTTCCAATAGGAATAAGGTTG...CCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCTAACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGATCTCTTCACCTTTCTaGTTCCAACACTTCACAAAC +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMISSPF*FQHFTN
Trigger: GTTTGTGAAGTGTTGGAAGCAGAAAGGTGAAGAGAT...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CCA 90 bp AGCACAGACTGCAGCTCCTTGGAATACTCATGCTCTGTTTCCAGGATGTTCTGTTCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGT +
Preference number: 2 (lower is better)
Translates to: STDCSSLEYSCSVSRMFCSSLVC*KLNLAR
Trigger: ACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA...ACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR TCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGAAGGGAAAGTATCTCTaGCTTGAAAACAACCTCTTT +
Preference number: 2 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMKGKYL*LENNLF
Trigger: AAAGAGGTTGTTTTCAAGTCAGAGATACTTTCCCTT...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CAA 90 bp AAACTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTGAGCTGTaGTTCCACAGTGTGGGCCTCAACAGAAATTGTCACCCAAATGGC +
Preference number: 2 (lower is better)
Translates to: KLMSDIQNKRKKVEL*FHSVGLNRNCHPNG
Trigger: GCCATTTGGGTGACAATTTCTGTTGAGGCCCACACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR GCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACCTAAGAAAAGCAGGCTaGAGTACAAGCATTGTTAAG +
Preference number: 2 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNLRKAG*STSIVK
Trigger: CTTAACAATGCTTGTACTGCAGCCTGCTTTTCTTAG...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CCA 90 bp GACACTTCATTGCCATATGCAACCACAGACAATAAGCATACTGTACAATACAATTGGAGCAAACCTATGTaGCTGCATAAAATAGAAAAG +
Preference number: 2 (lower is better)
Translates to: DTSLPYATTDNKHTVQYNWSKPM*LHKIEK
Trigger: CTTTTCTATTTTATGCAGCCACATAGGTTTGCTCCA...ATTGTATTGTACAGTATGCTTATTGTCTGTGGTTGCATATGGCAATGAAGTGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 72 bp TGCCCGAGTGCCTGTTCCCGATGGCACCATGGAGCCTaGGCTACACACGAGTCAGACAGCTGCCACGGCATC +
Preference number: 3 (lower is better)
Translates to: CPSACSRWHHGA*ATHESDSCHGI
Trigger: GATGCCGTGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCGCGCAGGCACAGCACTaGAGGGCTCTCGCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPAQAQH*RALAVL
Trigger: CAGCACAGCGAGAGCCCTCAAGTGCTGTGCCTGCGC...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 72 bp GTCTCCTGTCGTGTCCCAGGAAAGTGGGGGTTGGCATaGAGTGCACAGGGCGCATGGGCAGCAGCTGGAGGA +
Preference number: 3 (lower is better)
Translates to: VSCRVPGKWGLA*SAQGAWAAAGG
Trigger: TCCTCCAGCTGCTGCCCATGCGCCCTGTGCACTTCATGCCAACCCCCACTTTCCTGGGACACGACAGGAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTCGGCGGTGGCAAGGACACTGGCGAACATGGTCTTTaGTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCC +
Preference number: 3 (lower is better)
Translates to: LGGGKDTGEHGL*FLLMEGLPSNP
Trigger: GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTGTCCTTGCCACCGCCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp GGGTGTAGCACACACACACTGAGCAGTCGACCCCGGTaGGGTCTCCTGTCGTGTCCCAGGAAAGTGGGGGTT +
Preference number: 3 (lower is better)
Translates to: GCSTHTLSSRPR*GLLSCPRKVGV
Trigger: AACCCCCACTTTCCTGGGACACGACAGGAGACCGCACCGGGGTCGACTGCTCAGTGTGTGTGTGCTACACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTGTGCTGCCCTGCAGCTCCAGGTCAACCCCCTTCATaGACAGCGTGTGTGCTCCTCTACTCGCAGCAGCAG +
Preference number: 3 (lower is better)
Translates to: LCCPAAPGQPPS*TACVLLYSQQQ
Trigger: CTGCTGCTGCGAGTAGAGGAGCACACACGCTGTGCATGAAGGGGGTTGACCTGGAGCTGCAGGGCAGCACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp CGGCAACCTCGGCGGTGGCAAGGACACTGGCGAACATaGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAG +
Preference number: 3 (lower is better)
Translates to: RQPRRWQGHWRT*SLLPVDGGAAQ
Trigger: CTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTGTCCTTGCCACCGCCGAGGTTGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAACAGAAGCAGGGCCGCTaGCCCAGGCCACCAGCCTTC +
Preference number: 3 (lower is better)
Translates to: ADSRSLESLEDTGSSERQQKQGR*PRPPAF
Trigger: GAAGGCTGGTGGCCTGGGCAAGCGGCCCTGCTTCTG...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp GTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTaGCCACGCAGAAACCTCCACAGGTGGGTGGGTGGG +
Preference number: 3 (lower is better)
Translates to: VWQKERAQTASK*PRRNLHRWVGG
Trigger: CCCACCCACCCACCTGTGGAGGTTTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTGTCGTGTCCCAGGAAAGTGGGGGTTGGCATGAAGTaGACAGGGCGCATGGGCAGCAGCTGGAGGAGAACA +
Preference number: 3 (lower is better)
Translates to: LSCPRKVGVGMK*TGRMGSSWRRT
Trigger: TGTTCTCCTCCAGCTGCTGCCCATGCGCCCTGTGCACTTCATGCCAACCCCCACTTTCCTGGGACACGACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTCTGCTCTCAACACCCAGTGGCACCAGCCCTGGTGTaGATCAGCCCGGTGTTCTGCACTGTCACCAGAGCA +
Preference number: 3 (lower is better)
Translates to: LCSQHPVAPALV*ISPVFCTVTRA
Trigger: TGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACACCAGGGCTGGTGCCACTGGGTGTTGAGAGCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp TTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCATaGAGCCTGCGCTACACACGAGTCAGACAGCTGCCA +
Preference number: 3 (lower is better)
Translates to: FTVPECLFPMAP*SLRYTRVRQLP
Trigger: TGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp TTCTCGCTCAGAGGGTTAGGAGGGCTTTCAGTGGCCTaGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAG +
Preference number: 3 (lower is better)
Translates to: FSLRGLGGLSVA*TTLTAARGRAE
Trigger: CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCCTAACCCTCTGAGCGAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GCAGTCGTATCGAACCCTTTGGGAGGGCTCTTCAAGGTCCCTGATTTGGGTGACCAGCCGGTCCTGCCATaGTGTGTGCCCTCCCACCAG +
Preference number: 3 (lower is better)
Translates to: AVVSNPLGGLFKVPDLGDQPVLP*CVPSHQ
Trigger: CTGGTGGGAGGGCACACACAATGGCAGGACCGGCTG...GTCACCCAAATCAGGGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 72 bp GGCACAGAGCAATGGGTGGACACAGATTCCAGACTCTaGTCTCAACACCCAGTGGCACCAGCCCTGGTGTGC +
Preference number: 3 (lower is better)
Translates to: GTEQWVDTDSRL*SQHPVAPALVC
Trigger: GCACACCAGGGCTGGTGCCACTGGGTGTTGAGAGCAGAGTCTGGAATCTGTGTCCACCCATTGCTCTGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 72 bp AACAAACGCCAGGAGGGCTCGTCTCCCAGGTCACCCTaGGGGAACATGCTCAGACTTCCAGACTGTGCTGTG +
Preference number: 3 (lower is better)
Translates to: NKRQEGSSPRSP*GNMLRLPDCAV
Trigger: CACAGCACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGAGACGAGCCCTCCTGGCGTTTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 72 bp GGGACAGACAGACAGACTCAGTGTGAGCAGCTGTGCTaGCCTGCAGCTCCAGGTCAACCCCCTTCATGCACA +
Preference number: 3 (lower is better)
Translates to: GTDRQTQCEQLC*PAAPGQPPSCT
Trigger: TGTGCATGAAGGGGGTTGACCTGGAGCTGCAGGGCAGCACAGCTGCTCACACTGAGTCTGTCTGTCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp TGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTaGATCCTCAGAGAGACAAGGCGGCGTGCTGACAGC +
Preference number: 3 (lower is better)
Translates to: CRFSLPGEPGRH*ILRETRRRADS
Trigger: GCTGTCAGCACGCCGCCTTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp TGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTaGAAGACACTGGATCCTCAGAGAGACAAGGCGGCG +
Preference number: 3 (lower is better)
Translates to: CSWVQILAPWRA*KTLDPQRDKAA
Trigger: CGCCGCCTTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp ACCCAGGCCTGTGCTGCCCCTGGAGGAGCTATCGGGTaGCTGTCCGCTCTGATACATTGTAACACCACCGTA +
Preference number: 3 (lower is better)
Translates to: TQACAAPGGAIG*LSALIHCNTTV
Trigger: TACGGTGGTGTTACAATGTATCAGAGCGGACAGCCACCCGATAGCTCCTCCAGGGGCAGCACAGGCCTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp ACTGTAACACCACAACACCCAGGCCTGTGCTGCCCCTaGAGGAGCTATCGGGTGGCTGTCCGCTCTGATACA +
Preference number: 3 (lower is better)
Translates to: TVTPQHPGLCCP*RSYRVAVRSDT
Trigger: TGTATCAGAGCGGACAGCCACCCGATAGCTCCTCCAGGGGCAGCACAGGCCTGGGTGTTGTGGTGTTACAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CAA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGGTGCCAGCAGTGGAGTaGCAAGGAGTGTTGTTCCTG +
Preference number: 3 (lower is better)
Translates to: DLGVGERRPVLLVSKLPAVPAVE*QGVLFL
Trigger: CAGGAACAACACTCCTTGCAACTCCACTGCTGGCAC...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCATGGCGAACATGGTCTTaGCTTCCTGTTGATGGAGGG +
Preference number: 3 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAWRTWS*LPVDGG
Trigger: CCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp GTAGAAACGATGGCCCCTCCAACGCTGTGTCCCCTCTaGTACATGAGGACCATCTCCTGTGCCTGTGGCACT +
Preference number: 3 (lower is better)
Translates to: VETMAPPTLCPL*YMRTISCACGT
Trigger: AGTGCCACAGGCACAGGAGATGGTCCTCATGTAGCAGAGGGGACACAGCGTTGGAGGGGCCATCGTTTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp CACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATaGCACCATGGAGCCTGCGCTACACACGAGTCAGAC +
Preference number: 3 (lower is better)
Translates to: HTNSLCPSACSR*HHGACATHESD
Trigger: GTCTGACTCGTGTGTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp TGGACACAGATTCCAGACTCTGCTCTCAACACCCAGTaGCACCAGCCCTGGTGTGCATCAGCCCGGTGTTCT +
Preference number: 3 (lower is better)
Translates to: WTQIPDSALNTQ*HQPWCASARCS
Trigger: AGAACACCGGGCTGATGCACACCAGGGCTGGTGCCACTGGGTGTTGAGAGCAGAGTCTGGAATCTGTGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp CGATGGCCCCTCCAACGCTGTGTCCCCTCTGCTACATaGGGACCATCTCCTGTGCCTGTGGCACTAACAAAT +
Preference number: 3 (lower is better)
Translates to: RWPLQRCVPSAT*GPSPVPVALTN
Trigger: ATTTGTTAGTGCCACAGGCACAGGAGATGGTCCTCATGTAGCAGAGGGGACACAGCGTTGGAGGGGCCATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp TCCCTGATTTGGGTGACACGGGCTTCTCACTTGGCTTaGTCTCTCGAACGTAGTTGCTGGGGAACCAGCCGG +
Preference number: 3 (lower is better)
Translates to: SLIWVTRASHLA*SLERSCWGTSR
Trigger: CCGGCTGGTTCCCCAGCAACTACGTTCGAGAGATCAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 72 bp CACCATGGAGCCTGCGCTACACACGAGTCAGACAGCTaGCACGGCATCTCTTCACCTTTCTGCTTCCAACAC +
Preference number: 3 (lower is better)
Translates to: HHGACATHESDS*HGISSPFCFQH
Trigger: GTGTTGGAAGCAGAAAGGTGAAGAGATGCCGTGGCAGCTGTCTGACTCGTGTGTAGCGCAGGCTCCATGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp GCAGCAGCTGGAGGAGAACAGTGGAGTTTCGGACGCTaGTACACCGCAGCATGGTTCAGAACGGAAAGTGCT +
Preference number: 3 (lower is better)
Translates to: AAAGGEQWSFGR*YTAAWFRTESA
Trigger: AGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGCAGCGTCCGAAACTCCACTGTTCTCCTCCAGCTGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCAAACACACTGCCTTTaGCTGCAGTGTCTTCTGGGT +
Preference number: 3 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPQTHCL*LQCLLG
Trigger: ACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTG...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp ACTGGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAGACTGCAGCTCCTTGGATGCTGGAAGTTAAACTaGGCTCGTACTACCAGTTGG +
Preference number: 3 (lower is better)
Translates to: TGLQWPQVGGQHRLQLLGCWKLN*ARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCA...TCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 72 bp GTGGGTGTGTACACCAGGGCCGGTTTTAAAAAGAACTaGTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCC +
Preference number: 3 (lower is better)
Translates to: VGVYTRAGFKKN*SWVQILAPWRA
Trigger: GGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGCCCTGGTGTACACACCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp CAGGCTGCAGGCAAGCCAAGCACAGTCACACACCAATaGTACCTCCCACTAGTCATCACTGTGGTTCAGGGA +
Preference number: 3 (lower is better)
Translates to: QAAGKPSTVTHQ*YLPLVITVVQG
Trigger: TCCCTGAACCACAGTGATGACTAGTGGGAGGTACCATTGGTGTGTGACTGTGCTTGGCTTGCCTGCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp GCTTCGGGAAATAACTTCACTGCCACAAGGTGCTCATaGCTCTCACAGCATCCTGTGGCTGTGGGACAGCCA +
Preference number: 3 (lower is better)
Translates to: ASGNNFTATRCS*LSQHPVAVGQP
Trigger: TGGCTGTCCCACAGCCACAGGATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp ACTAGCTTGGCAACAAGGACTAGGGGTCAGAGGTCATaGCCACCAGAGCTCCATGCCCTGAAGGATGGAAAG +
Preference number: 3 (lower is better)
Translates to: TSLATRTRGQRS*PPELHALKDGK
Trigger: CTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCCTAGTCCTTGTTGCCAAGCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp CTGTGCCAGCAGTGGAGTTGCAAGGAGTGTTGTTCCTaGGTTGAGACCTGCTGTGACAGCAAACACACTGCC +
Preference number: 3 (lower is better)
Translates to: LCQQWSCKECCS*VETCCDSKHTA
Trigger: GGCAGTGTGTTTGCTGTCACAGCAGGTCTCAACTCAGGAACAACACTCCTTGCAACTCCACTGCTGGCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 72 bp GCATCCCTTACAGAACACAGAGGACTTAGGAGTTGGTaGGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCC +
Preference number: 3 (lower is better)
Translates to: ASLTEHRGLRSW*EAPCAVGIKAP
Trigger: GGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTCCTCTGTGTTCTGTAAGGGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 72 bp GAGTTTAATAATTGCAAGGGTGTAGCACACACACACTaGGCAGTCGACCCCGGTGCGGTCTCCTGTCGTGTC +
Preference number: 3 (lower is better)
Translates to: EFNNCKGVAHTH*AVDPGAVSCRV
Trigger: GACACGACAGGAGACCGCACCGGGGTCGACTGCTCAGTGTGTGTGTGCTACACCCTTGCAATTATTAAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp TTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTaGCTGTTCCCGATGGCACCATGGAGCCTGCGCTAC +
Preference number: 3 (lower is better)
Translates to: LRTETHKFTVPE*LFPMAPWSLRY
Trigger: GTAGCGCAGGCTCCATGGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTCTGGTGGATCCTGACAGACACAACCCATAGACACTaGAACCAGCTAGAGTGTGGCAGAAGGAGAGAGCAC +
Preference number: 3 (lower is better)
Translates to: LWWILTDTTHRH*NQLECGRRREH
Trigger: GTGCTCTCTCCTTCTGCCACACTCTAGCTGGTTGCAGTGTCTATGGGTTGTGTCTGTCAGGATCCACCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp ACACCAGGGCCGGTTTTAAAAAGAACTGCTCTTGGGTaGAGATTCTCGCTCCCTGGAGAGCCTGGAAGACAC +
Preference number: 3 (lower is better)
Translates to: TPGPVLKRTALG*RFSLPGEPGRH
Trigger: GTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGTTCTTTTTAAAACCGGCCCTGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp TACAGGGCTTCGGGAAATAACTTCACTGCCACAAGGTaGTCATGGCTCTCACAGCATCCTGTGGCTGTGGGA +
Preference number: 3 (lower is better)
Translates to: YRASGNNFTATR*SWLSQHPVAVG
Trigger: TCCCACAGCCACAGGATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 72 bp GTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTaGTGTGCTGAGTACAGGGCTTCGGGAAATAACTTC +
Preference number: 3 (lower is better)
Translates to: VTLREHAQTSRL*CAEYRASGNNF
Trigger: GAAGTTATTTCCCGAAGCCCTGTACTCAGCACAGCACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp AAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTaGACTTGCCACCTCCCTCCAACAGGCAGCAGTTTA +
Preference number: 3 (lower is better)
Translates to: KLPVGKSPSGTH*TCHLPPTGSSL
Trigger: TAAACTGCTGCCTGTTGGAGGGAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp ACAAACTCTTCAGGGGCAAAGCTGCTGCACAGCTACTaGGGACAGACAGACAGACTCAGTGTGAGCAGCTGT +
Preference number: 3 (lower is better)
Translates to: TNSSGAKLLHSY*GQTDRLSVSSC
Trigger: ACAGCTGCTCACACTGAGTCTGTCTGTCTGTCCCCAGTAGCTGTGCAGCAGCTTTGCCCCTGAAGAGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp AGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATaGCTTGGACCTACCTTCTCCATCAGTCTGCATCTT +
Preference number: 3 (lower is better)
Translates to: RNTVGPPTEGPR*LGPTFSISLHL
Trigger: AAGATGCAGACTGATGGAGAAGGTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CAA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCACTTGGGGTTTGTATaGCTTTATTCTCGCTCAGAG +
Preference number: 3 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPHLGFV*LYSRSE
Trigger: CTCTGAGCGAGAATAAAGCAATACAAACCCCAAGTG...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTTGAAAACAACCTCTTaGGAGGAAAGAAGGGACAGC +
Preference number: 3 (lower is better)
Translates to: DLGVGERRPVLLVSKLPALKTTS*EERRDS
Trigger: GCTGTCCCTTCTTTCCTCCAAAGAGGTTGTTTTCAA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GCCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACAAGGTACTCACTGGACTaGCCACCTCCCTCCAACAGG +
Preference number: 3 (lower is better)
Translates to: ATRAPCPEGWKEHYSLWTRYSLD*PPPSNR
Trigger: CCTGTTGGAGGGAGGTGGCAAGTCCAGTGAGTACCT...TGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp GGGGTCAGAGGTCATGGCCACCAGAGCTCCATGCCCTaGAGGATGGAAAGAACATTATTCCCTATGGACACT +
Preference number: 3 (lower is better)
Translates to: GVRGHGHQSSMP*RMERTLFPMDT
Trigger: AGTGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp AGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATaGAGAAGTGGCAGATATGTGCACACTCAGCCCAGA +
Preference number: 3 (lower is better)
Translates to: SPEAKGLWSVTA*RSGRYVHTQPR
Trigger: TCTGGGCTGAGTGTGCACATATCTGCCACTTCTCCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp GAACAGTGGAGTTTCGGACGCTGCTACACCGCAGCATaGTTCAGAACGGAAAGTGCTTCACATCTACACGAC +
Preference number: 3 (lower is better)
Translates to: EQWSFGRCYTAA*FRTESASHLHD
Trigger: GTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGCAGCGTCCGAAACTCCACTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp GAGGTCATGGCCACCAGAGCTCCATGCCCTGAAGGATaGAAAGAACATTATTCCCTATGGACACTGTGGCAC +
Preference number: 3 (lower is better)
Translates to: EVMATRAPCPEG*KEHYSLWTLWH
Trigger: GTGCCACAGTGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGCCATGACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp GCCGCAGGTAGGTGGACAGCACAGACTGCAGCTCCTTaGAATACTCATGCTCTGTTTCCAGGATGTTCTGTA +
Preference number: 3 (lower is better)
Translates to: AAGRWTAQTAAP*NTHALFPGCSV
Trigger: TACAGAACATCCTGGAAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR-3UTR CAA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCACTTGGGGTTTGTATaGCTTTATTCTCGCTCAGAG +
Preference number: 3 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIHLGFV*LYSRSE
Trigger: CTCTGAGCGAGAATAAAGCAATACAAACCCCAAGTG...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCTTGAAAACAACCTCTTaGGAGGAAAGAAGGGACAGC +
Preference number: 3 (lower is better)
Translates to: TALGCRFSLPGEPGRHWILKTTS*EERRDS
Trigger: GCTGTCCCTTCTTTCCTCCAAAGAGGTTGTTTTCAA...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGATGGCGAACATGGTCTTaGCTTCCTGTTGATGGAGGG +
Preference number: 3 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGWRTWS*LPVDGG
Trigger: CCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAATGCTCCACTTGGGGTTaGTATTGCTTTATTCTCGCT +
Preference number: 3 (lower is better)
Translates to: ADSRSLESLEDTGSSERQCSTWG*YCFILA
Trigger: AGCGAGAATAAAGCAATACAAACCCCAAGTGGAGCA...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR TCA 72 bp GCTACTTCAGCAACAGCCTCATTGCTGCTGCTCGCCTaGTGGAGACCACCTTCCTTAGTCCTAAATGTCACT +
Preference number: 3 (lower is better)
Translates to: ATSATASLLLLA*WRPPSLVLNVT
Trigger: AGTGACATTTAGGACTAAGGAAGGTGGTCTCCATCAGGCGAGCAGCAGCAATGAGGCTGTTGCTGAAGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCGAAAGTATCTCTGACTaGAAAACAACCTCTTTGGAG +
Preference number: 3 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIESISD*KTTSLE
Trigger: CTCCAAAGAGGTTGTTTTCAAGTCAGAGATACTTTC...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR-3UTR CAA 90 bp AGGGCTTCGGGAAATAACTTCACTGCCACAAGGTGCTCATGGCTCTCACAGCATAGAAAAAGCTCCCTGTaGGGAAAAGCCCATCAGGTA +
Preference number: 3 (lower is better)
Translates to: RASGNNFTATRCSWLSQHRKSSL*GKAHQV
Trigger: TACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCT...ATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CAA 90 bp TTGATGGCAGTCGTATCGAACCCTTTGGGAGGGCTCTTCAAGGTCCCTGATTTGACTACCAGTTGGCTGTaGGTGTTATCAGTCATGTCC +
Preference number: 3 (lower is better)
Translates to: LMAVVSNPLGGLFKVPDLTTSWL*VLSVMS
Trigger: GGACATGACTGATAACACCAACAGCCAACTGGTAGT...CAAATCAGGGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR TCA 72 bp CCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTaGTTCAGTGCTTCGGTCATAGACAATCCTCTCAAT +
Preference number: 3 (lower is better)
Translates to: PVFCTVTRAAVN*FSASVIDNPLN
Trigger: ATTGAGAGGATTGTCTATGACCGAAGCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp GAAATTGTCACCCAAATGGCTCTTGACTGGGACAAATaGGCAAGGGCAAACTGTCAGAACCAGCTCAGCAGC +
Preference number: 3 (lower is better)
Translates to: EIVTQMALDWDK*ARANCQNQLSS
Trigger: GCTGCTGAGCTGGTTCTGACAGTTTGCCCTTGCTCATTTGTCCCAGTCAAGAGCCATTTGGGTGACAATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp GGATGTTCTGTAGCACCACGTTGTAATAGCTCTTGTTaGTGGCAGTCGTATCGAACCCTTTGGGAGGGCTCT +
Preference number: 3 (lower is better)
Translates to: GCSVAPRCNSSC*WQSYRTLWEGS
Trigger: AGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAACAAGAGCTATTACAACGTGGTGCTACAGAACATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 72 bp TCTGGTCAGTCACTGCATGGAGAAGTGGCAGATATGTaGACACTCAGCCCAGACCTCAGTGTCTATAACTCA +
Preference number: 3 (lower is better)
Translates to: SGQSLHGEVADM*TLSPDLSVYNS
Trigger: TGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCACATATCTGCCACTTCTCCATGCAGTGACTGACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp GAGTCAGACAGCTGCCACGGCATCTCTTCACCTTTCTaGTTCCAACACTTCACAAACACAACTTCAGATCCC +
Preference number: 3 (lower is better)
Translates to: ESDSCHGISSPF*FQHFTNTTSDP
Trigger: GGGATCTGAAGTTGTGTTTGTGAAGTGTTGGAAGCAGAAAGGTGAAGAGATGCCGTGGCAGCTGTCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR GCA 72 bp CTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAGTaGTTCGGTCATAGACAATCCTCTCAATCTCTCCAC +
Preference number: 3 (lower is better)
Translates to: LHCHQSSCQLIQ*FGHRQSSQSLH
Trigger: GTGGAGAGATTGAGAGGATTGTCTATGACCGAAGCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp GTGGGCCTCAACAGAAATTGTCACCCAAATGGCTCTTaGCTGGGACAAATGAGCAAGGGCAAACTGTCAGAA +
Preference number: 3 (lower is better)
Translates to: VGLNRNCHPNGS*LGQMSKGKLSE
Trigger: TTCTGACAGTTTGCCCTTGCTCATTTGTCCCAGTCAAGAGCCATTTGGGTGACAATTTCTGTTGAGGCCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CAA 90 bp TCAGTTAGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGAAATTCAGTCTTAGATaGGCAATTAAGCCTCCACTA +
Preference number: 3 (lower is better)
Translates to: SVRQEHCWATYRRPEMAWKFSLR*AIKPPL
Trigger: TAGTGGAGGCTTAATTGCCAATCTAAGACTGAATTT...CCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCTAACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR-3UTR CAA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAGAAAGTATCTCTGACTaGAAAACAACCTCTTTGGAG +
Preference number: 3 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGESISD*KTTSLE
Trigger: CTCCAAAGAGGTTGTTTTCAAGTCAGAGATACTTTC...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
3UTR CCA 72 bp CCCTTTGAGAAGGAGAGTTCATCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGTACTACCAGTTGGCTG +
Preference number: 3 (lower is better)
Translates to: PFEKESSSSLVC*KLNLARTTSWL
Trigger: CAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR GCA 72 bp GTCCATACGGCTGTATCCAAAAGGAAGGGAAACAGTTaGTACATGGAGCTTGTAAGAAAAAGCTCCCTGTTG +
Preference number: 3 (lower is better)
Translates to: VHTAVSKRKGNS*YMELVRKSSLL
Trigger: CAACAGGGAGCTTTTTCTTACAAGCTCCATGTAGCAACTGTTTCCCTTCCTTTTGGATACAGCCGTATGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR GCA 72 bp TCACCCTTTGAGAAGGAGAGTTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCTCGTACTACCAGTTGG +
Preference number: 3 (lower is better)
Translates to: SPFEKESSSSLV*WKLNLARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
3UTR CCA 72 bp AGTCTTCTCCGTTGTGGCACTTGGAGCAAACCTATGTaGCTGCATAAAATAGAAAAGTGTCCATACGGCTGT +
Preference number: 3 (lower is better)
Translates to: SLLRCGTWSKPM*LHKIEKCPYGC
Trigger: ACAGCCGTATGGACACTTTTCTATTTTATGCAGCCACATAGGTTTGCTCCAAGTGCCACAACGGAGAAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CCA 72 bp ACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTGTaGGCCTCAACAGAAATTGTCACCCAAATGGCTCTT +
Preference number: 3 (lower is better)
Translates to: TNAKRLSCCSTV*ASTEIVTQMAL
Trigger: AAGAGCCATTTGGGTGACAATTTCTGTTGAGGCCCACACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR TCA 72 bp ACTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTaGGCTGTTGTTCCACAGTGTGGGCCTCAACAGAAA +
Preference number: 3 (lower is better)
Translates to: TNVRHSKQTQKG*AVVPQCGPQQK
Trigger: TTTCTGTTGAGGCCCACACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCAGGGCCGGAGGGGAGGTaGAGGCCGCAGGCAACTCAG +
Preference number: 4 (lower is better)
Translates to: RAELLDENSLQPNPARPAGPEGR*RPQATQ
Trigger: CTGAGTTGCCTGCGGCCTGCACCTCCCCTCCGGCCC...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR GCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGGGCTCCGTCAGGATCTaGAGCTCCAGCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAEGSVRI*SSSSFL
Trigger: GAGGAAGGAGCTGGAGCTGCAGATCCTGACGGAGCC...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAGTGCGGGCCGGAGGGGAGGTaGAGGCCGCAGGCAACTCAG +
Preference number: 4 (lower is better)
Translates to: HQPGVLHCHQSSCQLIQCGPEGR*RPQATQ
Trigger: CTGAGTTGCCTGCGGCCTGCACCTCCCCTCCGGCCC...GCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp CCTCGGCGGTGGCAAGGACACTGGCGAACATGGTCTTaGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCC +
Preference number: 4 (lower is better)
Translates to: PRRWQGHWRTWS*LPVDGGAAQQP
Trigger: GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTGTCCTTGCCACCGCCGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGG +
Preference number: 4 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPTCPGA*RACSGR
Trigger: CCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGT...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCGGCTCCGTCAGGATCTaGAGCTCCAGCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPGSVRI*SSSSFL
Trigger: GAGGAAGGAGCTGGAGCTGCAGATCCTGACGGAGCC...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGGCTCCTTTAGCAGTGTaGGGTACTTGTCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAEAPLAV*GTCPGA
Trigger: TGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGC...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGG +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWITCPGA*RACSGR
Trigger: CCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGT...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTCTCTCGAACGTAGTTaGTGGGGAACCAGCCGGTCC +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPSLERS*WGTSRS
Trigger: GGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCAAGTCCTGCTGGCTGGTaGAGGACACCAGAATCCGCT +
Preference number: 4 (lower is better)
Translates to: LVRGALCCWYQSSPRRHASPAGW*RTPESA
Trigger: AGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACT...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACC +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAEDVTFV*FCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATC...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAENSTCH*SAVAAG
Trigger: ACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTT...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCAGACGCTCACAGCAGATaGGTGGTTGGCACAGTAAGC +
Preference number: 4 (lower is better)
Translates to: RAELLDENSLQPNPARPADAHSR*VVGTVS
Trigger: GCTTACTGTGCCAACCACCCATCTGCTGTGAGCGTC...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCTCAGGCTCCAAGGCTTaGGGGTCTTCGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPSGSKA*GSSEAP
Trigger: TGGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGA...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
3UTR CAA 72 bp GAGGACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTaGGTATCAAAGCTCCCCGCGCAGACACGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: EDLGVGERRPVL*VSKLPAQTRRR
Trigger: TCTCCTGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCTCACTGTGCTCTGTaGGGACGCTCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPPHCAL*GRSQQM
Trigger: CATCTGCTGTGAGCGTCCTCACAGAGCACAGTGAGG...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCCCTCACTGTGCTCTGTaGGGACGCTCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPPHCAL*GRSQQM
Trigger: CATCTGCTGTGAGCGTCCTCACAGAGCACAGTGAGG...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGTCTTGGGGCTCTTACTaGGATCCTCCTTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAESWGSY*DPPCSR
Trigger: TCTGCTACAAGGAGGATCTCAGTAAGAGCCCCAAGA...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR TCA 90 bp GAGGGCTCGTCTCCCAGGTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTGTCTTCCGAGAGGTCTaGGGGCTCCAAACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: EGSSPRSPCGNMLRLPDCVFREV*GLQTRK
Trigger: CTTTCTCGTTTGGAGCCCTCAGACCTCTCGGAAGAC...ACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGAGACGAGCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCATCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGA +
Preference number: 4 (lower is better)
Translates to: LVRGALCCWYQSSPRRHASCKSC*LVQDTR
Trigger: TCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGA...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCTCAGGCTCCAAGGCTTaGGGGTCTTCGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWISGSKA*GSSEAP
Trigger: TGGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGA...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGTCAGGCTCCAAGGCTTaGGGGTCTTCGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSSGSKA*GSSEAP
Trigger: TGGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGA...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCAGGTTGCTCACAGATGTaGCCTTCGTCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAGCSQM*PSSASA
Trigger: TGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACC...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGGAAGGAAGTGTGTGTaGTGGCACCGAGTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQGRKCV*WHRVGF
Trigger: AAACCCCACTCGGTGCCATCACACACACTTCCTTCC...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR TCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCGTCTTCCGAGAGGTCTaGGGGCTCCAAACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPVFREV*GLQTRK
Trigger: CTTTCTCGTTTGGAGCCCTCAGACCTCTCGGAAGAC...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCTCTCTCGAACGTAGTTaGTGGGGAACCAGCCGGTCC +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWISLERS*WGTSRS
Trigger: GGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGA...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCAGGGCCGGAGGGGAGGTaGAGGCCGCAGGCAACTCAG +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSAGPEGR*RPQATQ
Trigger: CTGAGTTGCCTGCGGCCTGCACCTCCCCTCCGGCCC...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR GCA 90 bp AGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACGGAACTCGCGGATGTTaGTCAGGCACTCGCTCTCGT +
Preference number: 4 (lower is better)
Translates to: RQEHCWATYRRPEMAWTYGTRGC*SGTRSR
Trigger: ACGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCC...GTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAACTCGAACGTAGTTGCTaGGGAACCAGCCGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAELERSC*GTSRSC
Trigger: GCAGGACCGGCTGGTTCCCCAGCAACTACGTTCGAG...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTCGTATCGAACCCTTTaGGAGGGCTCTTCAAGGTCC +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPSYRTL*EGSSRS
Trigger: GGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCTCCTTTAGCAGTGTaGGGTACTTGTCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQAPLAV*GTCPGA
Trigger: TGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGC...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACCGCTCCTTTAGCAGTGTaGGGTACTTGTCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: DRNTVGPPTEGPRWLGPTAPLAV*GTCPGA
Trigger: TGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGC...GGTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGA +
Preference number: 4 (lower is better)
Translates to: DLGVGERRPVLLVSKLPASCKSC*LVQDTR
Trigger: TCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGTGTAATAGCTCTTGTTaGTGGCAGTCGTATCGAACC +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAECNSSC*WQSYRT
Trigger: GGTTCGATACGACTGCCATCAACAAGAGCTATTACA...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAGTGCCCTCACTGTGCTCTGTaGGGACGCTCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: HQPGVLHCHQSSCQLIQCPHCAL*GRSQQM
Trigger: CATCTGCTGTGAGCGTCCTCACAGAGCACAGTGAGG...GCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp AAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGG +
Preference number: 4 (lower is better)
Translates to: KKLPVGKSPSGTHWTCHLTCPGA*RACSGR
Trigger: CCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGT...GAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp ACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCTCGTATCGAACCCTTTaGGAGGGCTCTTCAAGGTCC +
Preference number: 4 (lower is better)
Translates to: TGEHGLCFLLMEGLPSNPSYRTL*EGSSRS
Trigger: GGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGA...GGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGTCGTATCGAACCCTTTaGGAGGGCTCTTCAAGGTCC +
Preference number: 4 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQSYRTL*EGSSRS
Trigger: GGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGA...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACGACGCTCACAGCAGATaGGTGGTTGGCACAGTAAGC +
Preference number: 4 (lower is better)
Translates to: RQEHCWATYRRPEMAWTYDAHSR*VVGTVS
Trigger: GCTTACTGTGCCAACCACCCATCTGCTGTGAGCGTC...GTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp ACTGGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAGACTGCAGCTCCTTGGAAAAGACTTTATCCGATaGGACGAAGGCCGAGCACAC +
Preference number: 4 (lower is better)
Translates to: TGLQWPQVGGQHRLQLLGKDFIR*DEGRAH
Trigger: GTGTGCTCGGCCTTCGTCCCATCGGATAAAGTCTTT...TCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS-3UTR TCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAAGGAAGGAAGTGTGTGTaGTGGCACCGAGTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAEGRKCV*WHRVGF
Trigger: AAACCCCACTCGGTGCCATCACACACACTTCCTTCC...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR GCA 90 bp GGACCAGCTCCCAGGAGAGGGAGCAAAGGGGTCAAAATACTGTATCCACTAGCTTCTCTCGAACGTAGTTaGTGGGGAACCAGCCGGTCC +
Preference number: 4 (lower is better)
Translates to: GPAPRRGSKGVKILYPLASLERS*WGTSRS
Trigger: GGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGA...AGCTAGTGGATACAGTATTTTGACCCCTTTGCTCCCTCTCCTGGGAGCTGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGTCCTTGGAATACTCATaGTCTGTTTCCAGGATGTTC +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAESLEYS*SVSRMF
Trigger: GAACATCCTGGAAACAGAGCATGAGTATTCCAAGGA...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAACCTAGGTCCTCACTGTaGTCTGTGAGGACGCTCACA +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAEPRSSL*SVRTLT
Trigger: TGTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGG...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CTGAGGCAGCCTCGCATTCAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACCCTAGGTCCTCACTGTaGTCTGTGAGGACGCTCACA +
Preference number: 4 (lower is better)
Translates to: LRQPRIQFFSGPVQTPYNPRSSL*SVRTLT
Trigger: TGTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGG...GTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTGAATGCGAGGCTGCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAGGCTCCGTCAGGATCTaGAGCTCCAGCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGGSVRI*SSSSFL
Trigger: GAGGAAGGAGCTGGAGCTGCAGATCCTGACGGAGCC...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GAGCTTGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGAGTACGCAGGCGTCAGTaGCACGGGCTTGCTGTCCGC +
Preference number: 4 (lower is better)
Translates to: ELVRKSSLLGKAHQVLTGVRRRQ*HGLAVR
Trigger: GCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTAC...TCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCAACGAGAAAGGCTACTaGGACGACCCAAGGAGTCTA +
Preference number: 4 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPNEKGY*DDPRSL
Trigger: TAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTT...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GGACCAGCTCCCAGGAGAGGGAGCAAAGGGGTCAAAATACTGTATCCACTAGCTTCCTTGAGCGACGCCTaGAAGAAGACCTCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GPAPRRGSKGVKILYPLASLSDA*KKTSGS
Trigger: GGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGA...AGCTAGTGGATACAGTATTTTGACCCCTTTGCTCCCTCTCCTGGGAGCTGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWINSTCH*SAVAAG
Trigger: ACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTT...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCGAGTCTAGACTTGATTaGTCGTCATCAGCCAAGACG +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPESRLD*SSSAKT
Trigger: CGTCTTGGCTGATGACGACCAATCAAGTCTAGACTC...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCCCTGGTGTGCATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACGAGTCTAGACTTGATTaGTCGTCATCAGCCAAGACG +
Preference number: 4 (lower is better)
Translates to: ALVCISPVFCTVTRAAVNESRLD*SSSAKT
Trigger: CGTCTTGGCTGATGACGACCAATCAAGTCTAGACTC...GTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACACCAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp ACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTaGGACCTACCTTCTCCATCAGTCTGCATCTTCCGT +
Preference number: 4 (lower is better)
Translates to: TLLGHLQKARDG*DLPSPSVCIFR
Trigger: ACGGAAGATGCAGACTGATGGAGAAGGTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCACCTTTTGTTTCCATaGACTCTCCTAGGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: DLGVGERRPVLLVSKLPAHLLFP*TLLGPH
Trigger: GTGAGGACCTAGGAGAGTTCATGGAAACAAAAGGTG...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTTGGGACATGTATGTaGCACTGCCCAGGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWILGTCM*HCPGSL
Trigger: TAAAGACCCTGGGCAGTGTCACATACATGTCCCAAG...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GAGGGCTCGTCTCCCAGGTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTCTCGATCATGCTCCCTaGTATCTCAAATGCATTCCT +
Preference number: 4 (lower is better)
Translates to: EGSSPRSPCGNMLRLPDCLDHAP*YLKCIP
Trigger: AGGAATGCATTTGAGATATCAGGGAGCATGATCGAG...ACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGAGACGAGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp CATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAGTGCGGTTGCTCACAGATGTaGCCTTCGTCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: HQPGVLHCHQSSCQLIQCGCSQM*PSSASA
Trigger: TGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACC...GCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GGAGGGCTTTCAGTGGCCTGGACAACGCTGACTGCGGCCAGAGGCAGAGCAGAGTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCT +
Preference number: 4 (lower is better)
Translates to: GGLSVAWTTLTAARGRAESSSLV*WKLNLA
Trigger: AGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGA...CTCTGCTCTGCCTCTGGCCGCAGTCAGCGTTGTCCAGGCCACTGAAAGCCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACACGGCTCCGTCAGGATCTaGAGCTCCAGCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: PPELHALKDGKNIIPYGHGSVRI*SSSSFL
Trigger: GAGGAAGGAGCTGGAGCTGCAGATCCTGACGGAGCC...GTGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAGTCCTGCTGGCTGGTaGAGGACACCAGAATCCGCT +
Preference number: 4 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGSPAGW*RTPESA
Trigger: AGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACT...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCAGTCCTGCTGGCTGGTaGAGGACACCAGAATCCGCT +
Preference number: 4 (lower is better)
Translates to: KKLPVGKSPSGTHWTCHLSPAGW*RTPESA
Trigger: AGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACT...GAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCGCTTCTCTAAGTCCTTaGGGGCCCTCTGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTASLSP*GPSVPP
Trigger: AGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGC...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCTCGAACGTAGTTGCTaGGGAACCAGCCGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMLERSC*GTSRSC
Trigger: GCAGGACCGGCTGGTTCCCCAGCAACTACGTTCGAG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GGAGCTTGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGCTCGAACGTAGTTGCTaGGGAACCAGCCGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: GACKKKLPVGKSPSGTHWLERSC*GTSRSC
Trigger: GCAGGACCGGCTGGTTCCCCAGCAACTACGTTCGAG...CCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: ADSRSLESLEDTGSSERQNSTCH*SAVAAG
Trigger: ACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTT...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAACCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTG +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAEPPTLC*ASGDFV
Trigger: CACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGG...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TCAGTTAGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGCAGCAGATGGGTGGTTaGCACAGTAAGCGAGGTACA +
Preference number: 4 (lower is better)
Translates to: SVRQEHCWATYRRPEMAWQQMGG*HSKRGT
Trigger: TGTACCTCGCTTACTGTGCCAACCACCCATCTGCTG...CCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCTAACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp TCGAACCCTTTGGGAGGGCTCTTCAAGGTCCCTGATTaGGGTGACACGGGCTTCTCACTTGGCTTGATCTCT +
Preference number: 4 (lower is better)
Translates to: SNPLGGLFKVPD*GDTGFSLGLIS
Trigger: AGAGATCAAGCCAAGTGAGAAGCCCGTGTCACCCAAATCAGGGACCTTGAAGAGCCCTCCCAAAGGGTTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS-3UTR TCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACACCTCACTGTGCTCTGTaGGGACGCTCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTPHCAL*GRSQQM
Trigger: CATCTGCTGTGAGCGTCCTCACAGAGCACAGTGAGG...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCACCTTTTGTTTCCATaGACTCTCCTAGGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIHLLFP*TLLGPH
Trigger: GTGAGGACCTAGGAGAGTTCATGGAAACAAAAGGTG...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTTCTTGACACTGAGCTaGAAGGTTTTTGAAGGCCGT +
Preference number: 4 (lower is better)
Translates to: DLGVGERRPVLLVSKLPAFLTLS*KVFEGR
Trigger: ACGGCCTTCAAAAACCTTTCAGCTCAGTGTCAAGAA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCGGTTGCTCACAGATGTaGCCTTCGTCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTGCSQM*PSSASA
Trigger: TGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACC...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCATCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCT +
Preference number: 4 (lower is better)
Translates to: RAELLDENSLQPNPARPASSSLV*WKLNLA
Trigger: AGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGA...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGTCTCTCGAACGTAGTTaGTGGGGAACCAGCCGGTCC +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMSLERS*WGTSRS
Trigger: GGACCGGCTGGTTCCCCAGCAACTACGTTCGAGAGA...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLLQETS*ILLGTV
Trigger: TACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAG...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GGACCAGCTCCCAGGAGAGGGAGCAAAGGGGTCAAAATACTGTATCCACTAGCTGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACC +
Preference number: 4 (lower is better)
Translates to: GPAPRRGSKGVKILYPLADVTFV*FCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATC...AGCTAGTGGATACAGTATTTTGACCCCTTTGCTCCCTCTCCTGGGAGCTGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAGCTTCTCTAAGTCCTTaGGGGCCCTCTGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGASLSP*GPSVPP
Trigger: AGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGC...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAGTGCAACGAGAAAGGCTACTaGGACGACCCAAGGAGTCTA +
Preference number: 4 (lower is better)
Translates to: HQPGVLHCHQSSCQLIQCNEKGY*DDPRSL
Trigger: TAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTT...GCACTGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGT +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPSSLVC*KLNLAR
Trigger: ACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGACGCGTGTTTGCTGGATaGAGTGAGAGGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGRVFAG*SERMGR
Trigger: CCTTCCCATCCTCTCACTCCATCCAGCAAACACGCG...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CCA 90 bp TTGGCAACAAGGACTAGGGGTCAGAGGTCATGGCCACCAGAGCTCCATGCCCTGCTACCAGTTGGCTGTTaGTGTTATCAGTCATGTCCA +
Preference number: 4 (lower is better)
Translates to: LATRTRGQRSWPPELHALLPVGC*CYQSCP
Trigger: TGGACATGACTGATAACACCAACAGCCAACTGGTAG...CAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCCTAGTCCTTGTTGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp CCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTaGCCACCTCCCTCCAACAGGCAGCAGTTTAAATTC +
Preference number: 4 (lower is better)
Translates to: PCWEKPIRYSLD*PPPSNRQQFKF
Trigger: GAATTTAAACTGCTGCCTGTTGGAGGGAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCTGTAATAGCTCTTGTTaGTGGCAGTCGTATCGAACC +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWICNSSC*WQSYRT
Trigger: GGTTCGATACGACTGCCATCAACAAGAGCTATTACA...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCGCCGTCATAGACTTCTaGATATCTTGTCTATCAGGA +
Preference number: 4 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPAVIDF*ISCLSG
Trigger: TCCTGATAGACAAGATATTCAGAAGTCTATGACGGC...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGGCCGTCATAGACTTCTaGATATCTTGTCTATCAGGA +
Preference number: 4 (lower is better)
Translates to: DLGVGERRPVLLVSKLPAAVIDF*ISCLSG
Trigger: TCCTGATAGACAAGATATTCAGAAGTCTATGACGGC...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTGCCGTCATAGACTTCTaGATATCTTGTCTATCAGGA +
Preference number: 4 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLAVIDF*ISCLSG
Trigger: TCCTGATAGACAAGATATTCAGAAGTCTATGACGGC...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCCTTGGGACATGTATGTaGCACTGCCCAGGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTLGTCM*HCPGSL
Trigger: TAAAGACCCTGGGCAGTGTCACATACATGTCCCAAG...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAAGACTTGCAGACAACATaGGCAGAAGGTTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: ADSRSLESLEDTGSSERQDLQTT*AEGLGR
Trigger: TCTTCCCAAACCTTCTGCTCATGTTGTCTGCAAGTC...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAAGACTTGCAGACAACATaGGCAGAAGGTTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAEDLQTT*AEGLGR
Trigger: TCTTCCCAAACCTTCTGCTCATGTTGTCTGCAAGTC...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TGTGCATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCATCTTGGGGCTCTTACTaGGATCCTCCTTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: CASARCSALSPEQLSTDSSWGSY*DPPCSR
Trigger: TCTGCTACAAGGAGGATCTCAGTAAGAGCCCCAAGA...TGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAATCATCAGCCAAGACGTaGTTATGCATCAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAESSAKT*LCIRSV
Trigger: CACTGACCTGATGCATAATCACGTCTTGGCTGATGA...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACGGACCACCCCGTCCTTaGGCGACGCCTGCAAGAAGA +
Preference number: 4 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNGPPRP*ATPARR
Trigger: TCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCC...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCT +
Preference number: 4 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPSSSLV*WKLNLA
Trigger: AGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGTACGCAGGCGTCAGTaGCACGGGCTTGCTGTCCGC +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTVRRRQ*HGLAVR
Trigger: GCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTAC...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR GCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCTATGCATCAGGTCAGTaGCTTGCCATGTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIYASGQ*LAMLSS
Trigger: TGAACTCAACATGGCAAGGCACTGACCTGATGCATA...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCGTGGAGCAGATTCTTTaGGTGAACGGGATGCAGAAC +
Preference number: 4 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTVEQIL*VNGMQN
Trigger: GTTCTGCATCCCGTTCACGCAAAGAATCTGCTCCAC...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp ACTGCTCTTGGGTGCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCAGACTGCAGCTCCTTaGAATACTCATGCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: TALGCRFSLPGEPGRHWIQTAAP*NTHALF
Trigger: AAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTG...GATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGCACCCAAGAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGCAGACTGCAGCTCCTTaGAATACTCATGCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSQTAAP*NTHALF
Trigger: AAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTG...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCGCGTGTTTGCTGGATaGAGTGAGAGGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMRVFAG*SERMGR
Trigger: CCTTCCCATCCTCTCACTCCATCCAGCAAACACGCG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CCA 90 bp GGAGCTTGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGCCTCAGGGTCCGAGATaGTTTTCTTGGGCGACTCCA +
Preference number: 4 (lower is better)
Translates to: GACKKKLPVGKSPSGTHWPQGPR*FSWATP
Trigger: TGGAGTCGCCCAAGAAAACCATCTCGGACCCTGAGG...CCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp TGTGCATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCAAAAGACTTTATCCGATaGGACGAAGGCCGAGCACAC +
Preference number: 4 (lower is better)
Translates to: CASARCSALSPEQLSTDSKDFIR*DEGRAH
Trigger: GTGTGCTCGGCCTTCGTCCCATCGGATAAAGTCTTT...TGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAACTCGATCATGCTCCCTaGTATCTCAAATGCATTCCT +
Preference number: 4 (lower is better)
Translates to: ADSRSLESLEDTGSSERQLDHAP*YLKCIP
Trigger: AGGAATGCATTTGAGATATCAGGGAGCATGATCGAG...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp AAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCCTGGTGAGAGATATATaGGCAGCAGCTCTTACGGGA +
Preference number: 4 (lower is better)
Translates to: KKLPVGKSPSGTHWTCHLLVRDI*AAALTG
Trigger: TCCCGTAAGAGCTGCTGCTCATATATCTCTCACCAG...GAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGGAACCAGCCGGTCCTaGCATTGTGTGTGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTGTSRS*HCVCPP
Trigger: GGGAGGGCACACACAATGGCAGGACCGGCTGGTTCC...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAGTGGAGCAGATTCTTTaGGTGAACGGGATGCAGAAC +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGVEQIL*VNGMQN
Trigger: GTTCTGCATCCCGTTCACGCAAAGAATCTGCTCCAC...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACATCGTATCGAACCCTTTaGGAGGGCTCTTCAAGGTCC +
Preference number: 4 (lower is better)
Translates to: ATRAPCPEGWKEHYSLWTSYRTL*EGSSRS
Trigger: GGACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGA...TGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAACAGACTGCAGCTCCTTaGAATACTCATGCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: ADSRSLESLEDTGSSERQQTAAP*NTHALF
Trigger: AAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTG...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACACAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: PPELHALKDGKNIIPYGHNSTCH*SAVAAG
Trigger: ACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTT...GTGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: DLGVGERRPVLLVSKLPACTSTC*KEDISS
Trigger: AGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TTGGCAACAAGGACTAGGGGTCAGAGGTCATGGCCACCAGAGCTCCATGCCCTGTGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LATRTRGQRSWPPELHALCTSTC*KEDISS
Trigger: AGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACA...CAGGGCATGGAGCTCTGGTGGCCATGACCTCTGACCCCTAGTCCTTGTTGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACCCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTG +
Preference number: 4 (lower is better)
Translates to: NTLPFAAVSSGSAECLENPPTLC*ASGDFV
Trigger: CACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGG...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCAGACGCTCACAGCAGATaGGTGGTTGGCACAGTAAGC +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSADAHSR*VVGTVS
Trigger: GCTTACTGTGCCAACCACCCATCTGCTGTGAGCGTC...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCATCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGA +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSASCKSC*LVQDTR
Trigger: TCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGA...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACGGTAGACTTTCTCGATaGTCCCGGGCAGCAGGCGCT +
Preference number: 4 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNGRLSR*SRAAGA
Trigger: AGCGCCTGCTGCCCGGGACCATCGAGAAAGTCTACC...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGACACCTTTTGTTTCCATaGACTCTCCTAGGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGHLLFP*TLLGPH
Trigger: GTGAGGACCTAGGAGAGTTCATGGAAACAAAAGGTG...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCTTCTTGACACTGAGCTaGAAGGTTTTTGAAGGCCGT +
Preference number: 4 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTFLTLS*KVFEGR
Trigger: ACGGCCTTCAAAAACCTTTCAGCTCAGTGTCAAGAA...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACACTTGGGACATGTATGTaGCACTGCCCAGGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTLGTCM*HCPGSL
Trigger: TAAAGACCCTGGGCAGTGTCACATACATGTCCCAAG...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACATCTTGGGGCTCTTACTaGGATCCTCCTTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTSWGSY*DPPCSR
Trigger: TCTGCTACAAGGAGGATCTCAGTAAGAGCCCCAAGA...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR TCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGATCATCAGCCAAGACGTaGTTATGCATCAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGSSAKT*LCIRSV
Trigger: CACTGACCTGATGCATAATCACGTCTTGGCTGATGA...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATGGGTCTTCCGAGAGGTCTaGGGGCTCCAAACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: YRFNSSPEAKGLWSVTAWVFREV*GLQTRK
Trigger: CTTTCTCGTTTGGAGCCCTCAGACCTCTCGGAAGAC...CCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TGTGCATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACTGATTCACTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTA +
Preference number: 4 (lower is better)
Translates to: CASARCSALSPEQLSTDSLRYWL*SNFEVL
Trigger: TAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAG...TGAATCAGTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGTCATCTTCATTGGTCTaGTGGAAGTTAAACTTGGCT +
Preference number: 4 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSSSSLV*WKLNLA
Trigger: AGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGA...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAATCCTTGGAATACTCATaGTCTGTTTCCAGGATGTTC +
Preference number: 4 (lower is better)
Translates to: LECGRRREHKRPLSAHAESLEYS*SVSRMF
Trigger: GAACATCCTGGAAACAGAGCATGAGTATTCCAAGGA...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCTAGGTCCTCACTGTaGTCTGTGAGGACGCTCACA +
Preference number: 4 (lower is better)
Translates to: ILQLRTETHKFTVPECLFPRSSL*SVRTLT
Trigger: TGTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGG...GAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCAGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACC +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSADVTFV*FCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATC...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCACAGCAGATGGGTGGTTaGCACAGTAAGCGAGGTACA +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSAQQMGG*HSKRGT
Trigger: TGTACCTCGCTTACTGTGCCAACCACCCATCTGCTG...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGTCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSSNAFL*FSLSSS
Trigger: GCTTGAGGACAGTGAAAACCATAGGAATGCATTTGA...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp GGTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTaGGCTGTTGGTGTTATCAGTCATGTCCTGAGGGCT +
Preference number: 4 (lower is better)
Translates to: GLLEVKLGSYYQ*AVGVISHVLRA
Trigger: AGCCCTCAGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS-3UTR TCA 90 bp AAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCGATGACATCACCCTTTaGGAAGGAGAGTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: KKLPVGKSPSGTHWTCHLDDITL*EGEFIF
Trigger: GAAGATGAACTCTCCTTCTCAAAGGGTGATGTCATC...GAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGACTTGCAGACAACATaGGCAGAAGGTTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMDLQTT*AEGLGR
Trigger: TCTTCCCAAACCTTCTGCTCATGTTGTCTGCAAGTC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GCCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACAGACTTGCAGACAACATaGGCAGAAGGTTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: ATRAPCPEGWKEHYSLWTDLQTT*AEGLGR
Trigger: TCTTCCCAAACCTTCTGCTCATGTTGTCTGCAAGTC...TGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGACTCGATCATGCTCCCTaGTATCTCAAATGCATTCCT +
Preference number: 4 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGLDHAP*YLKCIP
Trigger: AGGAATGCATTTGAGATATCAGGGAGCATGATCGAG...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GCCACCAGAGCTCCATGCCCTGAAGGATGGAAAGAACATTATTCCCTATGGACATCATCAGCCAAGACGTaGTTATGCATCAGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: ATRAPCPEGWKEHYSLWTSSAKT*LCIRSV
Trigger: CACTGACCTGATGCATAATCACGTCTTGGCTGATGA...TGTCCATAGGGAATAATGTTCTTTCCATCCTTCAGGGCATGGAGCTCTGGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTAGTCCTGCTGGCTGGTaGAGGACACCAGAATCCGCT +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTSPAGW*RTPESA
Trigger: AGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACT...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACAGTGGAGCAGATTCTTTaGGTGAACTTGAGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTVEQIL*VNLSSG
Trigger: CCCTGAACTCAAGTTCACGCAAAGAATCTGCTCCAC...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074856.13
CDS-3UTR GCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCAAACGAGAAAGGCTACTaGGACGACCCAAGGAGTCTA +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSANEKGY*DDPRSL
Trigger: TAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTT...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GGAGCTTGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGGCAGCTCTTACGGGATaGAGAACCCATTCTGTAACT +
Preference number: 4 (lower is better)
Translates to: GACKKKLPVGKSPSGTHWAALTG*RTHSVT
Trigger: AGTTACAGAATGGGTTCTGCATCCCGTAAGAGCTGC...CCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACATCCACTCGTGTGACATaGATGACATCACCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTSTRVT*MTSPFE
Trigger: CTCAAAGGGTGATGTCATCCATGTCACACGAGTGGA...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGATGTCATTCCTGTTGTTaGCAGCTTCCCCTGATAGAT +
Preference number: 4 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGCHSCC*QLPLID
Trigger: ATCTATCAGGGGAAGCTGCCAACAACAGGAATGACA...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAATCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: ADSRSLESLEDTGSSERQSNAFL*FSLSSS
Trigger: GCTTGAGGACAGTGAAAACCATAGGAATGCATTTGA...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGACTACCAGTTGGCTGTTaGTGTTATCAGTCATGTCCA +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGLPVGC*CYQSCP
Trigger: TGGACATGACTGATAACACCAACAGCCAACTGGTAG...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
3UTR CAA 72 bp AGTTGCTACATGGAGCTTGTAAGAAAAAGCTCCCTGTaGGGAAAAGCCCATCAGGTACTCACTGGACTTGCC +
Preference number: 4 (lower is better)
Translates to: SCYMELVRKSSL*GKAHQVLTGLA
Trigger: GGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCCATGTAGCAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGATGACATCACCCTTTaGGAAGGAGAGTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMDDITL*EGEFIF
Trigger: GAAGATGAACTCTCCTTCTCAAAGGGTGATGTCATC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACACTCGATCATGCTCCCTaGTATCTCAAATGCATTCCT +
Preference number: 4 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTLDHAP*YLKCIP
Trigger: AGGAATGCATTTGAGATATCAGGGAGCATGATCGAG...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMLQETS*ILLGTV
Trigger: TACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: NTLPFAAVSSGSAECLENLQETS*ILLGTV
Trigger: TACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAG...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTCCTAGGTCCTCACTGTaGTCTGTGAGGACGCTCACA +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTPRSSL*SVRTLT
Trigger: TGTGAGCGTCCTCACAGAGCACAGTGAGGACCTAGG...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGACTTGCCACCTCTCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGT +
Preference number: 4 (lower is better)
Translates to: KKLPVGKSPSGTHWTCHLSSLVC*KLNLAR
Trigger: ACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA...GAGGTGGCAAGTCCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCTCCTTTAGCAGTGTaGGGTACTTGTCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTAPLAV*GTCPGA
Trigger: TGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGC...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACTGTCATTCCTGTTGTTaGCAGCTTCCCCTGATAGAT +
Preference number: 4 (lower is better)
Translates to: NTLPFAAVSSGSAECLENCHSCC*QLPLID
Trigger: ATCTATCAGGGGAAGCTGCCAACAACAGGAATGACA...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AACAGGCAGCAGTTTAAATTCAGTCTTAGATTGGCAATTAAGCCTCCACTAGGTCCGAGATGGTTTTCTTaGGCGACTCCAGCACGCCCA +
Preference number: 4 (lower is better)
Translates to: NRQQFKFSLRLAIKPPLGPRWFS*ATPARP
Trigger: TGGGCGTGCTGGAGTCGCCCAAGAAAACCATCTCGG...ACCTAGTGGAGGCTTAATTGCCAATCTAAGACTGAATTTAAACTGCTGCCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGG +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTTCPGA*RACSGR
Trigger: CCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGT...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACCTTGGGACATGTATGTaGCACTGCCCAGGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNLGTCM*HCPGSL
Trigger: TAAAGACCCTGGGCAGTGTCACATACATGTCCCAAG...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGGTTGCTCACAGATGTaGCCTTCGTCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTGCSQM*PSSASA
Trigger: TGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACC...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp GTTGTAATAGCTCTTGTTGATGGCAGTCGTATCGAACCCTTTGGGAGGGCTCTTCTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTA +
Preference number: 4 (lower is better)
Translates to: VVIALVDGSRIEPFGRALLRYWL*SNFEVL
Trigger: TAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAG...AAGAGCCCTCCCAAAGGGTTCGATACGACTGCCATCAACAAGAGCTATTACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS-3UTR GCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACTCCTTGGAATACTCATaGTCTGTTTCCAGGATGTTC +
Preference number: 4 (lower is better)
Translates to: NTLPFAAVSSGSAECLENSLEYS*SVSRMF
Trigger: GAACATCCTGGAAACAGAGCATGAGTATTCCAAGGA...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGAAAACTCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGT +
Preference number: 4 (lower is better)
Translates to: NTLPFAAVSSGSAECLENSSLVC*KLNLAR
Trigger: ACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA...GTTTTCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AGCAAACACACTGCCTTTTGCTGCAGTGTCTTCTGGGTCAGCAGAGTGCTTGGATGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SKHTAFCCSVFWVSRVLGCTSTC*KEDISS
Trigger: AGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACA...TCCAAGCACTCTGCTGACCCAGAAGACACTGCAGCAAAAGGCAGTGTGTTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTCCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTG +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTPPTLC*ASGDFV
Trigger: CACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGG...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTCAGCAGATGGGTGGTTaGCACAGTAAGCGAGGTACA +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTQQMGG*HSKRGT
Trigger: TGTACCTCGCTTACTGTGCCAACCACCCATCTGCTG...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp AACAGGCAGCAGTTTAAATTCAGTCTTAGATTGGCAATTAAGCCTCCACTAGGTTCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGA +
Preference number: 4 (lower is better)
Translates to: NRQQFKFSLRLAIKPPLGSCKSC*LVQDTR
Trigger: TCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGA...ACCTAGTGGAGGCTTAATTGCCAATCTAAGACTGAATTTAAACTGCTGCCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCGAGTCTAGACTTGATTaGTCGTCATCAGCCAAGACG +
Preference number: 4 (lower is better)
Translates to: ILQLRTETHKFTVPECLFESRLD*SSSAKT
Trigger: CGTCTTGGCTGATGACGACCAATCAAGTCTAGACTC...GAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATGGGATGACATCACCCTTTaGGAAGGAGAGTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: YRFNSSPEAKGLWSVTAWDDITL*EGEFIF
Trigger: GAAGATGAACTCTCCTTCTCAAAGGGTGATGTCATC...CCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCTTCTTGACACTGAGCTaGAAGGTTTTTGAAGGCCGT +
Preference number: 4 (lower is better)
Translates to: ILQLRTETHKFTVPECLFFLTLS*KVFEGR
Trigger: ACGGCCTTCAAAAACCTTTCAGCTCAGTGTCAAGAA...GAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CAACAGAGCCGCCTCATCACTAAATACAGACGGTTTGTGTTTGTTTTGTTTTTCCCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTG +
Preference number: 4 (lower is better)
Translates to: QQSRLITKYRRFVFVLFFPPTLC*ASGDFV
Trigger: CACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGG...GAAAAACAAAACAAACACAAACCGTCTGTATTTAGTGATGAGGCGGCTCTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR TCA 90 bp GACACTTCATTGCCATATGCAACCACAGACAATAAGCATACTGTACAATACAATGGAAGGAAGTGTGTGTaGTGGCACCGAGTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: DTSLPYATTDNKHTVQYNGRKCV*WHRVGF
Trigger: AAACCCCACTCGGTGCCATCACACACACTTCCTTCC...ATTGTATTGTACAGTATGCTTATTGTCTGTGGTTGCATATGGCAATGAAGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCATCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: CTLSPDLSVYNSHVATSASNAFL*FSLSSS
Trigger: GCTTGAGGACAGTGAAAACCATAGGAATGCATTTGA...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GACACTTCATTGCCATATGCAACCACAGACAATAAGCATACTGTACAATACAATCGCGTGTTTGCTGGATaGAGTGAGAGGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: DTSLPYATTDNKHTVQYNRVFAG*SERMGR
Trigger: CCTTCCCATCCTCTCACTCCATCCAGCAAACACGCG...ATTGTATTGTACAGTATGCTTATTGTCTGTGGTTGCATATGGCAATGAAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp TGTCCATACGGCTGTATCCAAAAGGAAGGGAAACAGTaGCTACATGGAGCTTGTAAGAAAAAGCTCCCTGTT +
Preference number: 4 (lower is better)
Translates to: CPYGCIQKEGKQ*LHGACKKKLPV
Trigger: AACAGGGAGCTTTTTCTTACAAGCTCCATGTAGCAACTGTTTCCCTTCCTTTTGGATACAGCCGTATGGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
3UTR CAA 72 bp ATGACATCACCCTTTGAGAAGGAGAGTTCATCTTCATaGGTCTGCTGGAAGTTAAACTTGGCTCGTACTACC +
Preference number: 4 (lower is better)
Translates to: MTSPFEKESSSS*VCWKLNLARTT
Trigger: GGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGATGAACTCTCCTTCTCAAAGGGTGATGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS-3UTR TCA 90 bp CAACAGAGCCGCCTCATCACTAAATACAGACGGTTTGTGTTTGTTTTGTTTTTCCACCTTTTGTTTCCATaGACTCTCCTAGGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: QQSRLITKYRRFVFVLFFHLLFP*TLLGPH
Trigger: GTGAGGACCTAGGAGAGTTCATGGAAACAAAAGGTG...GAAAAACAAAACAAACACAAACCGTCTGTATTTAGTGATGAGGCGGCTCTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTLQETS*ILLGTV
Trigger: TACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAG...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CAGAGCTGCAGAAATGTTAGGTGCTATCAGCATGACTACAGTTCCACAAATGTATATGCATCAGGTCAGTaGCTTGCCATGTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: QSCRNVRCYQHDYSSTNVYASGQ*LAMLSS
Trigger: TGAACTCAACATGGCAAGGCACTGACCTGATGCATA...TACATTTGTGGAACTGTAGTCATGCTGATAGCACCTAACATTTCTGCAGCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTCAGACTGCAGCTCCTTaGAATACTCATGCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTQTAAP*NTHALF
Trigger: AAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTG...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp ATACTGCAGTTAAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCTGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: ILQLRTETHKFTVPECLFCTSTC*KEDISS
Trigger: AGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACA...GAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTTAACTGCAGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTGACGCTCACAGCAGATaGGTGGTTGGCACAGTAAGC +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTDAHSR*VVGTVS
Trigger: GCTTACTGTGCCAACCACCCATCTGCTGTGAGCGTC...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTTGTCATTCCTGTTGTTaGCAGCTTCCCCTGATAGAT +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTCHSCC*QLPLID
Trigger: ATCTATCAGGGGAAGCTGCCAACAACAGGAATGACA...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp CAGAGCTGCAGAAATGTTAGGTGCTATCAGCATGACTACAGTTCCACAAATGTATGTCATTCCTGTTGTTaGCAGCTTCCCCTGATAGAT +
Preference number: 4 (lower is better)
Translates to: QSCRNVRCYQHDYSSTNVCHSCC*QLPLID
Trigger: ATCTATCAGGGGAAGCTGCCAACAACAGGAATGACA...TACATTTGTGGAACTGTAGTCATGCTGATAGCACCTAACATTTCTGCAGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACC +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTDVTFV*FCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATC...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTCAGCAGATGGGTGGTTaGCACAGTAAGCGAGGTACA +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTQQMGG*HSKRGT
Trigger: TGTACCTCGCTTACTGTGCCAACCACCCATCTGCTG...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp CTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTTTCTTGACACTGAGCTaGAAGGTTTTTGAAGGCCGT +
Preference number: 4 (lower is better)
Translates to: LMSDIQNKRKKVELLFHSFLTLS*KVFEGR
Trigger: ACGGCCTTCAAAAACCTTTCAGCTCAGTGTCAAGAA...ACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CCA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTTCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTSNAFL*FSLSSS
Trigger: GCTTGAGGACAGTGAAAACCATAGGAATGCATTTGA...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR GCA 90 bp CTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTTCCTTGGAATACTCATaGTCTGTTTCCAGGATGTTC +
Preference number: 4 (lower is better)
Translates to: LMSDIQNKRKKVELLFHSSLEYS*SVSRMF
Trigger: GAACATCCTGGAAACAGAGCATGAGTATTCCAAGGA...ACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR GCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTTATGCATCAGGTCAGTaGCTTGCCATGTTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTYASGQ*LAMLSS
Trigger: TGAACTCAACATGGCAAGGCACTGACCTGATGCATA...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR TCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTGCCGTCATAGACTTCTaGATATCTTGTCTATCAGGA +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTAVIDF*ISCLSG
Trigger: TCCTGATAGACAAGATATTCAGAAGTCTATGACGGC...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CCA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTTCTTCATTGGTCTGCTaGAAGTTAAACTTGGCTCGT +
Preference number: 4 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTSSLVC*KLNLAR
Trigger: ACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS GCA 90 bp CTAGGCGCAGGGACGCCCCGCAGGCGCGCAGGAACTCGCGGATGTTaGTCAGGCACTCGCTCTCGTTCCGCGGCTCCGGGTAGACTTTCT +
Preference number: 5 (lower is better)
Translates to: LGAGTPRRRAGTRGC*SGTRSRSAAPGRLS
Trigger: AGAAAGTCTACCCGGAGCCGCGGAACGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGCCTGCGGGGCGTCCCTGCGCCTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS TCA 90 bp CGGGCAGCAGGCGCTCCAGCAGCCGGCATAGGACCACCCCGTCCTTaGGCGACGCCTGCAAGAAGACCTCAGGGTCCGAGATGGTTTTCT +
Preference number: 5 (lower is better)
Translates to: RAAGAPAAGIGPPRP*ATPARRPQGPRWFS
Trigger: AGAAAACCATCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCTATGCCGGCTGCTGGAGCGCCTGCTGCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS GCA 90 bp GCCATGGTGAGAGGGGTGGGGGAGTGTGTGGTACGCAGGCGTCAGTaGCACGGGCTTGCTGTCCGCGTGTTTGCTGGATGGAGTGAGAGG +
Preference number: 5 (lower is better)
Translates to: AMVRGVGECVVRRRQ*HGLAVRVFAGWSER
Trigger: CCTCTCACTCCATCCAGCAAACACGCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTACCACACACTCCCCCACCCCTCTCACCATGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCAAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: RAELLDENSLQPNPARPARRMKG*LRPVVS
Trigger: GCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCT...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS GCA 90 bp CGCTCCAGCAGCCGGCATAGGACCACCCCGTCCTTGAGCGACGCCTaGAAGAAGACCTCAGGGTCCGAGATGGTTTTCTTGGGCGACTCC +
Preference number: 5 (lower is better)
Translates to: RSSSRHRTTPSLSDA*KKTSGSEMVFLGDS
Trigger: GGAGTCGCCCAAGAAAACCATCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCTATGCCGGCTGCTGGAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS-3UTR CAA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPRRMKG*LRPVVS
Trigger: GCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCT...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GAGGGCTCGTCTCCCAGGTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: EGSSPRSPCGNMLRLPDCRRMKG*LRPVVS
Trigger: GCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCT...ACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGAGACGAGCCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 90 bp GTCTCTCCAGCTCCTTTAGCAGTGTGGGGTACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGGTGGTCAGCACCAGGATCCCAGGGC +
Preference number: 5 (lower is better)
Translates to: VSPAPLAVWGTCPGA*RACSGRWSAPGSQG
Trigger: GCCCTGGGATCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGCTGGAGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCAGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACA +
Preference number: 5 (lower is better)
Translates to: RAELLDENSLQPNPARPAGTEWG*MVGLLT
Trigger: TGTGAGCAACCCCACCATCAAACCCCACTCGGTGCC...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GCCCTGGTGTGCATCAGCCCGGTGTTCTGCACTGTCACCAGAGCAGCTGTCAACGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACA +
Preference number: 5 (lower is better)
Translates to: ALVCISPVFCTVTRAAVNGTEWG*MVGLLT
Trigger: TGTGAGCAACCCCACCATCAAACCCCACTCGGTGCC...GTTGACAGCTGCTCTGGTGACAGTGCAGAACACCGGGCTGATGCACACCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp GCAGATTCTCGCTCCCTGGAGAGCCTGGAAGACACTGGATCCTCAGAGAGACAACAGCCGGTCCTGCCATaGTGTGTGCCCTCCCACCAG +
Preference number: 5 (lower is better)
Translates to: ADSRSLESLEDTGSSERQQPVLP*CVPSHQ
Trigger: CTGGTGGGAGGGCACACACAATGGCAGGACCGGCTG...TTGTCTCTCTGAGGATCCAGTGTCTTCCAGGCTCTCCAGGGAGCGAGAATCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGAGCAGTGTGGGGTACTaGTCCAGGCGCATGAAGGGC +
Preference number: 5 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQSSVGY*SRRMKG
Trigger: GCCCTTCATGCGCCTGGACAAGTACCCCACACTGCT...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCATTGCTGTCCGCGTGTTaGCTGGATGGAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: RAELLDENSLQPNPARPALLSAC*LDGVRG
Trigger: TCCTCTCACTCCATCCAGCAAACACGCGGACAGCAA...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS CCA 90 bp GCCACGGGCTTGCTGTCCGCGTGTTTGCTGGATGGAGTGAGAGGATaGGAAGGAAGTGTGTGTGATGGCACCGAGTGGGGTTTGATGGTG +
Preference number: 5 (lower is better)
Translates to: ATGLLSACLLDGVRG*EGSVCDGTEWGLMV
Trigger: CACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTCCCATCCTCTCACTCCATCCAGCAAACACGCGGACAGCAAGCCCGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCGTCGTATCGAACCCTTaGGGAGGGCTCTTCAAGGTC +
Preference number: 5 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPVVSNP*GGLFKV
Trigger: GACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGAC...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AGACAGGAACACTGTTGGGCCACCTACAGAAGGCCCGAGATGGCTTGGACCTACAGCAGTGTGGGGTACTaGTCCAGGCGCATGAAGGGC +
Preference number: 5 (lower is better)
Translates to: RQEHCWATYRRPEMAWTYSSVGY*SRRMKG
Trigger: GCCCTTCATGCGCCTGGACAAGTACCCCACACTGCT...GTAGGTCCAAGCCATCTCGGGCCTTCTGTAGGTGGCCCAACAGTGTTCCTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGAGGAACTCGCGGATGTaGCTCAGGCACTCGCTCTCG +
Preference number: 5 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSRNSRM*LRHSLS
Trigger: CGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCT...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 90 bp ACCTTCGTCTGCTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTaGTGGCTGGTGCAGGACACCAGAATCCGCTCGATCATGCTCCCT +
Preference number: 5 (lower is better)
Translates to: TFVCFCRCSTHSCKS*WLVQDTRIRSIMLP
Trigger: AGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTGTCGTATCGAACCCTTaGGGAGGGCTCTTCAAGGTC +
Preference number: 5 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLVVSNP*GGLFKV
Trigger: GACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGAC...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 90 bp GGTTTGATGGTGGGGTTGCTCACAGATGTGACCTTCGTCTGCTTCTaGAGGTGTTCCACCCACTCGTGTAAGTCCTGCTGGCTGGTGCAG +
Preference number: 5 (lower is better)
Translates to: GLMVGLLTDVTFVCF*RCSTHSCKSCWLVQ
Trigger: CTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 90 bp GAGTGGGGTTTGATGGTGGGGTTGCTCACAGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: EWGLMVGLLTDVTFV*FCRCSTHSCKSCWL
Trigger: CAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 90 bp TTCGTCTGCTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGAATCCGCTCGATCATGCTCCCTGAT +
Preference number: 5 (lower is better)
Translates to: FVCFCRCSTHSCKSC*LVQDTRIRSIMLPD
Trigger: ATCAGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCAGCAGTGTGGGGTACTaGTCCAGGCGCATGAAGGGC +
Preference number: 5 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTSSVGY*SRRMKG
Trigger: GCCCTTCATGCGCCTGGACAAGTACCCCACACTGCT...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AGAGCAGAGCTCCTGGATGAAAACAGCCTGCAGCCAAACCCTGCCCGGCCGGCATTGTCATTCCTGTTGTaGGCAGCTTCCCCTGATAGA +
Preference number: 5 (lower is better)
Translates to: RAELLDENSLQPNPARPALSFLL*AASPDR
Trigger: TCTATCAGGGGAAGCTGCCAACAACAGGAATGACAA...TGCCGGCCGGGCAGGGTTTGGCTGCAGGCTGTTTTCATCCAGGAGCTCTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TGCGGGAACATGCTCAGACTTCCAGACTGTGCTGTGCTGAGTACAGGGCTTCGGTTGCTGTCCGCGTGTTaGCTGGATGGAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: CGNMLRLPDCAVLSTGLRLLSAC*LDGVRG
Trigger: TCCTCTCACTCCATCCAGCAAACACGCGGACAGCAA...CCGAAGCCCTGTACTCAGCACAGCACAGTCTGGAAGTCTGAGCATGTTCCCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGCTCAGGCTCCAAGGCTaGGGGGTCTTCGGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMLRLQG*GVFGGS
Trigger: GGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGAG...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CAA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACACTCAGGCTCCAAGGCTaGGGGGTCTTCGGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTLRLQG*GVFGGS
Trigger: GGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGAG...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS GCA 90 bp GCTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTGCTGGCTGGTaGAGGACACCAGAATCCGCTCGATCATGCTCCCTGATATCTCAA +
Preference number: 5 (lower is better)
Translates to: ASAGVPPTRVSPAGW*RTPESARSCSLISQ
Trigger: TTGAGATATCAGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 90 bp TCTGCTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTGCTGGCTaGTGCAGGACACCAGAATCCGCTCGATCATGCTCCCTGATATCT +
Preference number: 5 (lower is better)
Translates to: SASAGVPPTRVSPAG*CRTPESARSCSLIS
Trigger: AGATATCAGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTGCTGGAAGTTAAACTaGGCTCGTACTACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPCWKLN*ARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACA +
Preference number: 5 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGGTEWG*MVGLLT
Trigger: TGTGAGCAACCCCACCATCAAACCCCACTCGGTGCC...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGGCCCTGTGGAGCAGATTCTTaGCGTGAACTTGAGTTCAGG +
Preference number: 5 (lower is better)
Translates to: EHGLCFLLMEGLPSNPRPCGADS*RELEFR
Trigger: CCTGAACTCAAGTTCACGCAAAGAATCTGCTCCACA...GGGCCTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074856.13
CDS-3UTR CAA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCATTCTGGAAGCAACACTaGTGGAGCAGATTCTTTGCG +
Preference number: 5 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAFWKQH*WSRFFA
Trigger: CGCAAAGAATCTGCTCCACAAGTGTTGCTTCCAGAA...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCTGTGGAGCAGATTCTTaGCGTGAACGGGATGCAGAA +
Preference number: 5 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPCGADS*RERDAE
Trigger: TTCTGCATCCCGTTCACGCAAAGAATCTGCTCCACA...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GGAGCTTGTAAGAAAAAGCTCCCTGTTGGGAAAAGCCCATCAGGTACTCACTGGAGGACCACCCCGTCCTaGAGCGACGCCTGCAAGAAG +
Preference number: 5 (lower is better)
Translates to: GACKKKLPVGKSPSGTHWRTTPS*SDACKK
Trigger: CTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCT...CCAGTGAGTACCTGATGGGCTTTTCCCAACAGGGAGCTTTTTCTTACAAGCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 90 bp CAGAGTCTTCCGAGAGGTCTGAGGGCTCCAAACGAGAAAGGCTACTaGGACGACCCAAGGAGTCTAGACTTGATTGGTCGTCATCAGCCA +
Preference number: 5 (lower is better)
Translates to: QSLPRGLRAPNEKGY*DDPRSLDLIGRHQP
Trigger: TGGCTGATGACGACCAATCAAGTCTAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTTTGGAGCCCTCAGACCTCTCGGAAGACTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 90 bp CTCATCTGCGGCATCAGGCTCAGGAAGCAGCCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTGCATTCTTCTAGGGACTGTACAAGC +
Preference number: 5 (lower is better)
Translates to: LICGIRLRKQPPTLC*ASGDFVHSSRDCTS
Trigger: GCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGGCTGCTTCCTGAGCCTGATGCCGCAGATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 90 bp ATGGTCTTGGGGCTCTTACTGAGATCTGTGTGTGATGGCACCGAGTaGGGTTTGATGGTGGGGTTGCTCACAGATGTGACCTTCGTCTGC +
Preference number: 5 (lower is better)
Translates to: MVLGLLLRSVCDGTE*GLMVGLLTDVTFVC
Trigger: GCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACAGATCTCAGTAAGAGCCCCAAGACCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GACTTAGGAGTTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGTGCTGGAAGTTAAACTaGGCTCGTACTACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: DLGVGERRPVLLVSKLPACWKLN*ARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCA...CGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAACTCCTAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TTGGTGAGAGGCGCCCTGTGCTGTTGGTATCAAAGCTCCCCGCGCAGACACGCAGGACTGTACAAGCACTaGCTGGAAGGAAGATATTTC +
Preference number: 5 (lower is better)
Translates to: LVRGALCCWYQSSPRRHAGLYKH*LEGRYF
Trigger: GAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCC...TGCGTGTCTGCGCGGGGAGCTTTGATACCAACAGCACAGGGCGCCTCTCACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGAGCAGTGTGGGGTACTaGTCCAGGCGCATGAAGGGC +
Preference number: 5 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMSSVGY*SRRMKG
Trigger: GCCCTTCATGCGCCTGGACAAGTACCCCACACTGCT...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACA +
Preference number: 5 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMGTEWG*MVGLLT
Trigger: TGTGAGCAACCCCACCATCAAACCCCACTCGGTGCC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCCAGAGCTTTTTCATGGTCTaGGGGCTCTTACTGAGATCC +
Preference number: 5 (lower is better)
Translates to: WRTWSLLPVDGGAAQQPQSFFMV*GLLLRS
Trigger: GGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCT...CTGGGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CAA 90 bp CACTGGCGAACATGGTCTTTGCTTCCTGTTGATGGAGGGGCTGCCCAGCAACCCTTCTGGAAGCAACACTaGTGGAGCAGATTCTTTGCG +
Preference number: 5 (lower is better)
Translates to: HWRTWSLLPVDGGAAQQPFWKQH*WSRFFA
Trigger: CGCAAAGAATCTGCTCCACAAGTGTTGCTTCCAGAA...GGGTTGCTGGGCAGCCCCTCCATCAACAGGAAGCAAAGACCATGTTCGCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTACTACCAGTTGGCTGTaGGTGTTATCAGTCATGTCC +
Preference number: 5 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLTTSWL*VLSVMS
Trigger: GGACATGACTGATAACACCAACAGCCAACTGGTAGT...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 90 bp ATGGGCTGTCCATATACTGTCATACTCAGAGTCTTCCGAGAGGTCTaGGGGCTCCAAACGAGAAAGGCTACTGCGACGACCCAAGGAGTC +
Preference number: 5 (lower is better)
Translates to: MGCPYTVILRVFREV*GLQTRKATATTQGV
Trigger: GACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTTTGGAGCCCTCAGACCTCTCGGAAGACTCTGAGTATGACAGTATATGGACAGCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp TGCGGGAACATGCTCAGACTTCCAGACTGTGCTGTGCTGAGTACAGGGCTTCGGTGCTGGAAGTTAAACTaGGCTCGTACTACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: CGNMLRLPDCAVLSTGLRCWKLN*ARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCA...CCGAAGCCCTGTACTCAGCACAGCACAGTCTGGAAGTCTGAGCATGTTCCCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp TCCCAGGTCACCCTGCGGGAACATGCTCAGACTTCCAGACTGTGCTGTGCTGAGGGACTGTACAAGCACTaGCTGGAAGGAAGATATTTC +
Preference number: 5 (lower is better)
Translates to: SQVTLREHAQTSRLCCAEGLYKH*LEGRYF
Trigger: GAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCC...CTCAGCACAGCACAGTCTGGAAGTCTGAGCATGTTCCCGCAGGGTGACCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp CAGTTCTTCTCAGGGCCAGTGCAAACCCCTTACAACAAACGCCAGGAGGGCTCGTTGTCATTCCTGTTGTaGGCAGCTTCCCCTGATAGA +
Preference number: 5 (lower is better)
Translates to: QFFSGPVQTPYNKRQEGSLSFLL*AASPDR
Trigger: TCTATCAGGGGAAGCTGCCAACAACAGGAATGACAA...CGAGCCCTCCTGGCGTTTGTTGTAAGGGGTTTGCACTGGCCCTGAGAAGAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp ACATTATTCCCTATGGACACTGTGGCACCGTTTCTAAAGCAGGTGTCCAAAAACCTCAGGCTCCAAGGCTaGGGGGTCTTCGGAGGCTCC +
Preference number: 5 (lower is better)
Translates to: TLFPMDTVAPFLKQVSKNLRLQG*GVFGGS
Trigger: GGAGCCTCCGAAGACCCCCAAGCCTTGGAGCCTGAG...GTTTTTGGACACCTGCTTTAGAAACGGTGCCACAGTGTCCATAGGGAATAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS CCA 90 bp TTGCTGAACTCAACTTGTCACTGGTCTGCAGTGGCCGCAGGTAGGTaGACAGCACAGACTGCAGCTCCTTGGAATACTCATGCTCTGTTT +
Preference number: 5 (lower is better)
Translates to: LLNSTCHWSAVAAGR*TAQTAAPWNTHALF
Trigger: AAACAGAGCATGAGTATTCCAAGGAGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS-3UTR CAA 90 bp CACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAAATGGTCGTATCGAACCCTTaGGGAGGGCTCTTCAAGGTC +
Preference number: 5 (lower is better)
Translates to: HRSMVQNGKCFTSTRQEMVVSNP*GGLFKV
Trigger: GACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGAC...CATTTCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CTAGAGTGTGGCAGAAGGAGAGAGCACAAACGGCCTCTAAGTGCCCACGCAGAATTGTCATTCCTGTTGTaGGCAGCTTCCCCTGATAGA +
Preference number: 5 (lower is better)
Translates to: LECGRRREHKRPLSAHAELSFLL*AASPDR
Trigger: TCTATCAGGGGAAGCTGCCAACAACAGGAATGACAA...TTCTGCGTGGGCACTTAGAGGCCGTTTGTGCTCTCTCCTTCTGCCACACTCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS TCA 90 bp AAGAGCAGGAGGTATCTCTCATTCTTCTCCTCGCTTCCCGCACACTaGATGGTGACTTGGGACATGTATGTGACACTGCCCAGGGTCTTT +
Preference number: 5 (lower is better)
Translates to: KSRRYLSFFSSLPAH*MVTWDMYVTLPRVF
Trigger: AAAGACCCTGGGCAGTGTCACATACATGTCCCAAGTCACCATTCAGTGTGCGGGAAGCGAGGAGAAGAATGAGAGATACCTCCTGCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS TCA 90 bp CGACCCAAGGAGTCTAGACTTGATTGGTCGTCATCAGCCAAGACGTaGTTATGCATCAGGTCAGTGCCTTGCCATGTTGAGTTCAGGGTC +
Preference number: 5 (lower is better)
Translates to: RPKESRLDWSSSAKT*LCIRSVPCHVEFRV
Trigger: GACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCAAGTCTAGACTCCTTGGGTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 90 bp TTGATTGGTCGTCATCAGCCAAGACGTGATTATGCATCAGGTCAGTaGCTTGCCATGTTGAGTTCAGGGTCTGGCGCGTCTTTGCACTTG +
Preference number: 5 (lower is better)
Translates to: LIGRHQPRRDYASGQ*LAMLSSGSGASLHL
Trigger: CAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGATTTGCTGAACTCAACTaGTCACTGGTCTGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGFAELN*SLVCSG
Trigger: GCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAA...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AAGGGCAAACTGTCAGAACCAGCTCAGCAGCGCCGACCACAGCGACAGCTCCTTCCTGATACAAATCATTaGCATCAAAAGTCTCTAGGC +
Preference number: 5 (lower is better)
Translates to: KGKLSEPAQQRRPQRQLLPDTNH*HQKSLG
Trigger: GCCTAGAGACTTTTGATGCAAATGATTTGTATCAGG...AAGGAGCTGTCGCTGTGGTCGGCGCTGCTGAGCTGGTTCTGACAGTTTGCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 90 bp ATCAGCCAAGACGTGATTATGCATCAGGTCAGTGCCTTGCCATGTTaGGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGCAATAAGCTTC +
Preference number: 5 (lower is better)
Translates to: ISQDVIMHQVSALPC*VQGLARLCTCAISF
Trigger: GAAGCTTATTGCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS TCA 90 bp GTGTCCAAGAGCACTTGGCTCAGTATCAAGCTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTACTGTGTGAAGACTGGGATCCCAGG +
Preference number: 5 (lower is better)
Translates to: VSKSTWLSIKLRYWL*SNFEVLLCEDWDPR
Trigger: CCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGATACTGAGCCAAGTGCTCTTGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS GCA 90 bp TCAGGAAGCAGCCACCAACTCTCTGTTGGGCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTACAAGCACTTGCTGGAAGGAAGATA +
Preference number: 5 (lower is better)
Translates to: SGSSHQLSVGLQETS*ILLGTVQALAGRKI
Trigger: TATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGGCTGCTTCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS GCA 90 bp TGTTGGCAGCTTCCCCTGATAGATGAAACCACTCATCCTGGGACTTaGAGACAACATGAGCAGAAGGTTTGGGAAGAGCAGGAGGTATCT +
Preference number: 5 (lower is better)
Translates to: CWQLPLIDETTHPGT*RQHEQKVWEEQEVS
Trigger: AGATACCTCCTGCTCTTCCCAAACCTTCTGCTCATGTTGTCTGCAAGTCCCAGGATGAGTGGTTTCATCTATCAGGGGAAGCTGCCAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 90 bp GTAAGTCCTGCTGGCTGGTGCAGGACACCAGAATCCGCTCGATCATaGTCCCTGATATCTCAAATGCATTCCTATGGTTTTCACTGTCCT +
Preference number: 5 (lower is better)
Translates to: VSPAGWCRTPESARS*SLISQMHSYGFHCP
Trigger: AGGACAGTGAAAACCATAGGAATGCATTTGAGATATCAGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 90 bp CTGTGTGAAGACTGGGATCCCAGGGAATCAAAAGACTTTATCCGATaGGACGAAGGCCGAGCACACACAGAATCACTTCCTAGTCCAATG +
Preference number: 5 (lower is better)
Translates to: LCEDWDPRESKDFIR*DEGRAHTESLPSPM
Trigger: CATTGGACTAGGAAGTGATTCTGTGTGTGCTCGGCCTTCGTCCCATCGGATAAAGTCTTTTGATTCCCTGGGATCCCAGTCTTCACACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp TATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATGGGTCGTATCGAACCCTTaGGGAGGGCTCTTCAAGGTC +
Preference number: 5 (lower is better)
Translates to: YRFNSSPEAKGLWSVTAWVVSNP*GGLFKV
Trigger: GACCTTGAAGAGCCCTCCCAAAGGGTTCGATACGAC...CCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACATTTGCTGAACTCAACTaGTCACTGGTCTGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTFAELN*SLVCSG
Trigger: GCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAA...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp AAGAACAGAGACACACAAATTCACTGTGCCCGAGTGCCTGTTCCCGATGGCACCGGACTGTACAAGCACTaGCTGGAAGGAAGATATTTC +
Preference number: 5 (lower is better)
Translates to: KNRDTQIHCARVPVPDGTGLYKH*LEGRYF
Trigger: GAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCC...GGTGCCATCGGGAACAGGCACTCGGGCACAGTGAATTTGTGTGTCTCTGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATGGTTGCTGTCCGCGTGTTaGCTGGATGGAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: YRFNSSPEAKGLWSVTAWLLSAC*LDGVRG
Trigger: TCCTCTCACTCCATCCAGCAAACACGCGGACAGCAA...CCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS-3UTR CAA 90 bp AGGGCTTCGGGAAATAACTTCACTGCCACAAGGTGCTCATGGCTCTCACAGCATAGCTTTTTCATGGTCTaGGGGCTCTTACTGAGATCC +
Preference number: 5 (lower is better)
Translates to: RASGNNFTATRCSWLSQHSFFMV*GLLLRS
Trigger: GGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCT...ATGCTGTGAGAGCCATGAGCACCTTGTGGCAGTGAAGTTATTTCCCGAAGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACATGTGGAGCAGATTCTTaGCGTGAACGGGATGCAGAA +
Preference number: 5 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTCGADS*RERDAE
Trigger: TTCTGCATCCCGTTCACGCAAAGAATCTGCTCCACA...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS TCA 90 bp TGGCTGTTGGTGTTATCAGTCATGTCCAAGCTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTACTGTGTGAAGACTGGGATCCCAGG +
Preference number: 5 (lower is better)
Translates to: WLLVLSVMSKLRYWL*SNFEVLLCEDWDPR
Trigger: CCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGGACATGACTGATAACACCAACAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS CCA 90 bp GATTTCCCATTAAATATGAAGTGTTTGCTGAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAGACTGCAGCT +
Preference number: 5 (lower is better)
Translates to: DFPLNMKCLLNSTCH*SAVAAGRWTAQTAA
Trigger: AGCTGCAGTCTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAACACTTCATATTTAATGGGAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS-3UTR CAA 90 bp GCTACACCGCAGCATGGTTCAGAACGGAAAGTGCTTCACATCTACACGACAGGAGGACTGTACAAGCACTaGCTGGAAGGAAGATATTTC +
Preference number: 5 (lower is better)
Translates to: ATPQHGSERKVLHIYTTGGLYKH*LEGRYF
Trigger: GAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCC...TCCTGTCGTGTAGATGTGAAGCACTTTCCGTTCTGAACCATGCTGCGGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACATTGTCATTCCTGTTGTaGGCAGCTTCCCCTGATAGA +
Preference number: 5 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTLSFLL*AASPDR
Trigger: TCTATCAGGGGAAGCTGCCAACAACAGGAATGACAA...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CACATCTACACGACAGGAAATGGCTTGATTCCCCCGCATCCCTTACAGAACACAAGCTTTTTCATGGTCTaGGGGCTCTTACTGAGATCC +
Preference number: 5 (lower is better)
Translates to: HIYTTGNGLIPPHPLQNTSFFMV*GLLLRS
Trigger: GGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCT...TGTGTTCTGTAAGGGATGCGGGGGAATCAAGCCATTTCCTGTCGTGTAGATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
CDS TCA 90 bp TTTAGTGTCACCAAGGAGCTGAGGACCTTGTTAAAGTTCTGCCCCTaGTACAAATCATTTGCATCAAAAGTCTCTAGGCGCAGGGACGCC +
Preference number: 5 (lower is better)
Translates to: FSVTKELRTLLKFCP*YKSFASKVSRRRDA
Trigger: GGCGTCCCTGCGCCTAGAGACTTTTGATGCAAATGATTTGTATCAGGGGCAGAACTTTAACAAGGTCCTCAGCTCCTTGGTGACACTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS CCA 90 bp TCTTCATTGGTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTTaGCTGTTGGTGTTATCAGTCATGTCCAAGCTTCGGTACTGGCTC +
Preference number: 5 (lower is better)
Translates to: SSLVCWKLNLARTTS*LLVLSVMSKLRYWL
Trigger: GAGCCAGTACCGAAGCTTGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp TGCACACTCAGCCCAGACCTCAGTGTCTATAACTCACATGTAGCTACTTCAGCATGCTGGAAGTTAAACTaGGCTCGTACTACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: CTLSPDLSVYNSHVATSACWKLN*ARTTSW
Trigger: CCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCA...TGCTGAAGTAGCTACATGTGAGTTATAGACACTGAGGTCTGGGCTGAGTGTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TCAGATCCCAGTATTTACAAGGAGTACACAGGTATGCTATTTATAGATTCAACTAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: SDPSIYKEYTGMLFIDSTRRMKG*LRPVVS
Trigger: GCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCT...AGTTGAATCTATAAATAGCATACCTGTGTACTCCTTGTAAATACTGGGATCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp CTAATGTCAGACATTCAAAACAAACGCAAAAAGGTTGAGCTGTTGTTCCACAGTTCCGAGATGGTTTTCTaGGGCGACTCCAGCACGCCC +
Preference number: 5 (lower is better)
Translates to: LMSDIQNKRKKVELLFHSSEMVF*GDSSTP
Trigger: GGGCGTGCTGGAGTCGCCCAAGAAAACCATCTCGGA...ACTGTGGAACAACAGCTCAACCTTTTTGCGTTTGTTTTGAATGTCTGACATTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 90 bp CGTTCATATTCTTTAGAACCTTCCTCACCAGCTTCTCTAAGTCCTTaGGGGCCCTCTGTTCCTCCTCTAAGGACTTCTTCATCTTCTTGT +
Preference number: 5 (lower is better)
Translates to: RSYSLEPSSPASLSP*GPSVPPLRTSSSSC
Trigger: ACAAGAAGATGAAGAAGTCCTTAGAGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGCTGGTGAGGAAGGTTCTAAAGAATATGAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTTTTGCTGAACTCAACTaGTCACTGGTCTGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTFAELN*SLVCSG
Trigger: GCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAA...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp TATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTGCATGGAGCTTTTTCATGGTCTaGGGGCTCTTACTGAGATCT +
Preference number: 5 (lower is better)
Translates to: YRFNSSPEAKGLWSVTAWSFFMV*GLLLRS
Trigger: AGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCT...CCATGCAGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTTTCTGGAAGCAACACTaGTGGAGCAGATTCTTTGCG +
Preference number: 5 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTFWKQH*WSRFFA
Trigger: CGCAAAGAATCTGCTCCACAAGTGTTGCTTCCAGAA...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS-3UTR CAA 90 bp GCTATTTATAGATTCAACTCAAGTCCAGAAGCCAAAGGACTCTGGTCAGTCACTACTACCAGTTGGCTGTaGGTGTTATCAGTCATGTCC +
Preference number: 5 (lower is better)
Translates to: AIYRFNSSPEAKGLWSVTTTSWL*VLSVMS
Trigger: GGACATGACTGATAACACCAACAGCCAACTGGTAGT...AGTGACTGACCAGAGTCCTTTGGCTTCTGGACTTGAGTTGAATCTATAAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS CCA 90 bp AGAATCCGCTCGATCATGCTCCCTGATATCTCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGCTTTGTGATTGTCATTCCTGTTGTT +
Preference number: 5 (lower is better)
Translates to: RIRSIMLPDISNAFL*FSLSSSFVIVIPVV
Trigger: AACAACAGGAATGACAATCACAAAGCTTGAGGACAGTGAAAACCATAGGAATGCATTTGAGATATCAGGGAGCATGATCGAGCGGATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS-3UTR CAA 90 bp GACACTTCATTGCCATATGCAACCACAGACAATAAGCATACTGTACAATACAATTTTGCTGAACTCAACTaGTCACTGGTCTGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: DTSLPYATTDNKHTVQYNFAELN*SLVCSG
Trigger: GCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAA...ATTGTATTGTACAGTATGCTTATTGTCTGTGGTTGCATATGGCAATGAAGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 90 bp GCTTCAGGAGACTTCGTGCATTCTTCTAGGGACTGTACAAGCACTTaGTGGAAGGAAGATATTTCCTCTAGATTTCCCATTAAATATGAA +
Preference number: 5 (lower is better)
Translates to: ASGDFVHSSRDCTST*WKEDISSRFPIKYE
Trigger: TTCATATTTAATGGGAAATCTAGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 90 bp TCAGGAGACTTCGTGCATTCTTCTAGGGACTGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCTAGATTTCCCATTAAATATGAAGTG +
Preference number: 5 (lower is better)
Translates to: SGDFVHSSRDCTSTC*KEDISSRFPIKYEV
Trigger: CACTTCATATTTAATGGGAAATCTAGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS GCA 72 bp GGGACGCCCCGCAGGCGCGCAGGAACTCGCGGATGTTaGTCAGGCACTCGCTCTCGTTCCGCGGCTCCGGGT +
Preference number: 6 (lower is better)
Translates to: GTPRRRAGTRGC*SGTRSRSAAPG
Trigger: ACCCGGAGCCGCGGAACGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGCCTGCGGGGCGTCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS CAA 72 bp AGGGACGCCCCGCAGGCGCGCAGGAACTCGCGGATGTaGCTCAGGCACTCGCTCTCGTTCCGCGGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: RDAPQARRNSRM*LRHSLSFRGSG
Trigger: CCCGGAGCCGCGGAACGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGCCTGCGGGGCGTCCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS TCA 72 bp GGCGCTCCAGCAGCCGGCATAGGACCACCCCGTCCTTaGGCGACGCCTGCAAGAAGACCTCAGGGTCCGAGA +
Preference number: 6 (lower is better)
Translates to: GAPAAGIGPPRP*ATPARRPQGPR
Trigger: TCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCTATGCCGGCTGCTGGAGCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS CAA 90 bp CCGGGCAGCAGGCGCTCCAGCAGCCGGCATAGGACCACCCCGTCCTaGAGCGACGCCTGCAAGAAGACCTCAGGGTCCGAGATGGTTTTC +
Preference number: 6 (lower is better)
Translates to: PGSRRSSSRHRTTPS*SDACKKTSGSEMVF
Trigger: GAAAACCATCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAAGGACGGGGTGGTCCTATGCCGGCTGCTGGAGCGCCTGCTGCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS GCA 72 bp AGAGGGGTGGGGGAGTGTGTGGTACGCAGGCGTCAGTaGCACGGGCTTGCTGTCCGCGTGTTTGCTGGATGG +
Preference number: 6 (lower is better)
Translates to: RGVGECVVRRRQ*HGLAVRVFAGW
Trigger: CCATCCAGCAAACACGCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTACCACACACTCCCCCACCCCTCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CAA 72 bp AGCAGTGTGGGGTACTTGTCCAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGCACCAGGATCCCAGGG +
Preference number: 6 (lower is better)
Translates to: SSVGYLSRRMKG*LRPVVSTRIPG
Trigger: CCCTGGGATCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 90 bp GAGGGGTGGGGGAGTGTGTGGTACGCAGGCGTCAGTGCCACGGGCTaGCTGTCCGCGTGTTTGCTGGATGGAGTGAGAGGATGGGAAGGA +
Preference number: 6 (lower is better)
Translates to: EGWGSVWYAGVSATG*LSACLLDGVRGWEG
Trigger: TCCTTCCCATCCTCTCACTCCATCCAGCAAACACGCGGACAGCAAGCCCGTGGCACTGACGCCTGCGTACCACACACTCCCCCACCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CAA 90 bp AGCTCCTTTAGCAGTGTGGGGTACTTGTCCAGGCGCATGAAGGGCTaGCTCAGGCCGGTGGTCAGCACCAGGATCCCAGGGCTGCTGGCA +
Preference number: 6 (lower is better)
Translates to: SSFSSVGYLSRRMKG*LRPVVSTRIPGLLA
Trigger: TGCCAGCAGCCCTGGGATCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp CAGCGAACTCCTCGTCCGAAGGCTTCCGCTCGGGCTTaGGCTTCGGCAGCAGCTTTTTCATGGTCTTGGGGC +
Preference number: 6 (lower is better)
Translates to: QRTPRPKASARA*ASAAAFSWSWG
Trigger: GCCCCAAGACCATGAAAAAGCTGCTGCCGAAGCGCAAGCCCGAGCGGAAGCCTTCGGACGAGGAGTTCGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp GGATCTGAGCGTCTTCTTCCAGCGCCGCTGTGCTCTTaGGCACAGCGAACTCCTCGTCCGAAGGCTTCCGCT +
Preference number: 6 (lower is better)
Translates to: GSERLLPAPLCS*AQRTPRPKASA
Trigger: AGCGGAAGCCTTCGGACGAGGAGTTCGCTGTGCGCAAGAGCACAGCGGCGCTGGAAGAAGACGCTCAGATCC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS TCA 72 bp GCTCCTTTAGCAGTGTGGGGTACTTGTCCAGGCGCATaGAGGGCTTGCTCAGGCCGGTGGTCAGCACCAGGA +
Preference number: 6 (lower is better)
Translates to: APLAVWGTCPGA*RACSGRWSAPG
Trigger: TCCTGGTGCTGACCACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp GCCTGCAAGAAGACCTCAGGGTCCGAGATGGTTTTCTaGGGCGACTCCAGCACGCCCAGGGTGATGAGCCAC +
Preference number: 6 (lower is better)
Translates to: ACKKTSGSEMVF*GDSSTPRVMSH
Trigger: GTGGCTCATCACCCTGGGCGTGCTGGAGTCGCCCAAGAAAACCATCTCGGACCCTGAGGTCTTCTTGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS CAA 90 bp TTGAGCGACGCCTGCAAGAAGACCTCAGGGTCCGAGATGGTTTTCTaGGGCGACTCCAGCACGCCCAGGGTGATGAGCCACGTAACGGTC +
Preference number: 6 (lower is better)
Translates to: LSDACKKTSGSEMVF*GDSSTPRVMSHVTV
Trigger: GACCGTTACGTGGCTCATCACCCTGGGCGTGCTGGAGTCGCCCAAGAAAACCATCTCGGACCCTGAGGTCTTCTTGCAGGCGTCGCTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000210104.2
CDS GCA 72 bp GTTTCCAGGATGTTCTGTAGCACCTCTCCTCCTCTCTaGGCCTCAGGTACATGCTGGCTGCTGCAGGACCCC +
Preference number: 6 (lower is better)
Translates to: VSRMFCSTSPPL*ASGTCWLLQDP
Trigger: GGGGTCCTGCAGCAGCCAGCATGTACCTGAGGCGCAGAGAGGAGGAGAGGTGCTACAGAACATCCTGGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239427.2
CDS CAA 72 bp ATGTGTCTCTCCAGCTCCTTTAGCAGTGTGGGGTACTaGTCCAGGCGCATGAAGGGCTTGCTCAGGCCGGTG +
Preference number: 6 (lower is better)
Translates to: MCLSSSFSSVGY*SRRMKGLLRPV
Trigger: CACCGGCCTGAGCAAGCCCTTCATGCGCCTGGACAAGTACCCCACACTGCTAAAGGAGCTGGAGAGACACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp GTGGGGTTGCTCACAGATGTGACCTTCGTCTGCTTCTaGAGGTGTTCCACCCACTCGTGTAAGTCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: VGLLTDVTFVCF*RCSTHSCKSCW
Trigger: CCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 72 bp TTCTGCAGGTGTTCCACCCACTCGTGTAAGTCCTGCTaGCTGGTGCAGGACACCAGAATCCGCTCGATCATG +
Preference number: 6 (lower is better)
Translates to: FCRCSTHSCKSC*LVQDTRIRSIM
Trigger: CATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGCAGGACTTACACGAGTGGGTGGAACACCTGCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 90 bp GAAGGAAGTGTGTGTGATGGCACCGAGTGGGGTTTGATGGTGGGGTaGCTCACAGATGTGACCTTCGTCTGCTTCTGCAGGTGTTCCACC +
Preference number: 6 (lower is better)
Translates to: EGSVCDGTEWGLMVG*LTDVTFVCFCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CAA 90 bp GTGAGAGGATGGGAAGGAAGTGTGTGTGATGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACAGATGTGACCTTCGTCTGCTTCTGC +
Preference number: 6 (lower is better)
Translates to: VRGWEGSVCDGTEWG*MVGLLTDVTFVCFC
Trigger: GCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTCCCATCCTCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CAA 90 bp CTGAGATCTGTGTGTGATGGCACCGAGTGGGGTTTGATGGTGGGGTaGCTCACAGATGTGACCTTCGTCTGCTTCTGCAGGTGTTCCACC +
Preference number: 6 (lower is better)
Translates to: LRSVCDGTEWGLMVG*LTDVTFVCFCRCST
Trigger: GGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACAGATCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS GCA 72 bp CCGAGAGGTCTGAGGGCTCCAAACGAGAAAGGCTACTaGGACGACCCAAGGAGTCTAGACTTGATTGGTCGT +
Preference number: 6 (lower is better)
Translates to: PRGLRAPNEKGY*DDPRSLDLIGR
Trigger: ACGACCAATCAAGTCTAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTTTGGAGCCCTCAGACCTCTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 72 bp GGCATCAGGCTCAGGAAGCAGCCACCAACTCTCTGTTaGGCTTCAGGAGACTTCGTGCATTCTTCTAGGGAC +
Preference number: 6 (lower is better)
Translates to: GIRLRKQPPTLC*ASGDFVHSSRD
Trigger: GTCCCTAGAAGAATGCACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGGCTGCTTCCTGAGCCTGATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 72 bp AGAGGATGGGAAGGAAGTGTGTGTGATGGCACCGAGTaGGGTTTGATGGTGGGGTTGCTCACAGATGTGACC +
Preference number: 6 (lower is better)
Translates to: RGWEGSVCDGTE*GLMVGLLTDVT
Trigger: GGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTCCCATCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CCA 72 bp GGGCTCTTACTGAGATCTGTGTGTGATGGCACCGAGTaGGGTTTGATGGTGGGGTTGCTCACAGATGTGACC +
Preference number: 6 (lower is better)
Translates to: GLLLRSVCDGTE*GLMVGLLTDVT
Trigger: GGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACAGATCTCAGTAAGAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS CAA 72 bp TGGGAAGGAAGTGTGTGTGATGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACAGATGTGACCTTCGTC +
Preference number: 6 (lower is better)
Translates to: WEGSVCDGTEWG*MVGLLTDVTFV
Trigger: GACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACACTTCCTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110909.9
CDS CAA 72 bp TCGGGCTTGCGCTTCGGCAGCAGCTTTTTCATGGTCTaGGGGCTCTTACTGAGATCTGTGTGTGATGGCACC +
Preference number: 6 (lower is better)
Translates to: SGLRFGSSFFMV*GLLLRSVCDGT
Trigger: GGTGCCATCACACACAGATCTCAGTAAGAGCCCCAAGACCATGAAAAAGCTGCTGCCGAAGCGCAAGCCCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS GCA 72 bp TTGATGGTGGGGTTGCTCACAGATGTGACCTTCGTCTaGTTCTGCAGGTGTTCCACCCACTCGTGTAAGTCC +
Preference number: 6 (lower is better)
Translates to: LMVGLLTDVTFV*FCRCSTHSCKS
Trigger: GGACTTACACGAGTGGGTGGAACACCTGCAGAAGCAGACGAAGGTCACATCTGTGAGCAACCCCACCATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp CGTCATCAGCCAAGACGTGATTATGCATCAGGTCAGTaGCTTGCCATGTTGAGTTCAGGGTCTGGCGCGTCT +
Preference number: 6 (lower is better)
Translates to: RHQPRRDYASGQ*LAMLSSGSGAS
Trigger: AGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS TCA 72 bp GACGTGATTATGCATCAGGTCAGTGCCTTGCCATGTTaGGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGCA +
Preference number: 6 (lower is better)
Translates to: DVIMHQVSALPC*VQGLARLCTCA
Trigger: TGCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp AGACGTGATTATGCATCAGGTCAGTGCCTTGCCATGTaGAGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGC +
Preference number: 6 (lower is better)
Translates to: RRDYASGQCLAM*SSGSGASLHLC
Trigger: GCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp TTACTGAGATCTGTGTGTGATGGCACCGAGTGGGGTTaGATGGTGGGGTTGCTCACAGATGTGACCTTCGTC +
Preference number: 6 (lower is better)
Translates to: LLRSVCDGTEWG*MVGLLTDVTFV
Trigger: GACGAAGGTCACATCTGTGAGCAACCCCACCATCAAACCCCACTCGGTGCCATCACACACAGATCTCAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110904.2
CDS CAA 90 bp GTATCTCTCATTCTTCTCCTCGCTTCCCGCACACTGAATGGTGACTaGGGACATGTATGTGACACTGCCCAGGGTCTTTATGTCATCCCC +
Preference number: 6 (lower is better)
Translates to: VSLILLLASRTLNGD*GHVCDTAQGLYVIP
Trigger: GGGGATGACATAAAGACCCTGGGCAGTGTCACATACATGTCCCAAGTCACCATTCAGTGTGCGGGAAGCGAGGAGAAGAATGAGAGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 90 bp GCTCCAAACGAGAAAGGCTACTGCGACGACCCAAGGAGTCTAGACTaGATTGGTCGTCATCAGCCAAGACGTGATTATGCATCAGGTCAG +
Preference number: 6 (lower is better)
Translates to: APNEKGYCDDPRSLD*IGRHQPRRDYASGQ
Trigger: CTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCAAGTCTAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTCGTTTGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS TCA 72 bp AGGTATCTCTCATTCTTCTCCTCGCTTCCCGCACACTaGATGGTGACTTGGGACATGTATGTGACACTGCCC +
Preference number: 6 (lower is better)
Translates to: RYLSFFSSLPAH*MVTWDMYVTLP
Trigger: GGGCAGTGTCACATACATGTCCCAAGTCACCATTCAGTGTGCGGGAAGCGAGGAGAAGAATGAGAGATACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp AGCCACCAACTCTCTGTTGGGCTTCAGGAGACTTCGTaGATTCTTCTAGGGACTGTACAAGCACTTGCTGGA +
Preference number: 6 (lower is better)
Translates to: SHQLSVGLQETS*ILLGTVQALAG
Trigger: TCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTCTCCTGAAGCCCAACAGAGAGTTGGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 72 bp GACTGGGATCCCAGGGAATCAAAAGACTTTATCCGATaGGACGAAGGCCGAGCACACACAGAATCACTTCCT +
Preference number: 6 (lower is better)
Translates to: DWDPRESKDFIR*DEGRAHTESLP
Trigger: AGGAAGTGATTCTGTGTGTGCTCGGCCTTCGTCCCATCGGATAAAGTCTTTTGATTCCCTGGGATCCCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110909.9
ENSMUST00000211409.2
CDS CAA 72 bp GAAGCAACACTTGTGGAGCAGATTCTTTGCGTGAACTaGAGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGC +
Preference number: 6 (lower is better)
Translates to: EATLVEQILCVN*SSGSGASLHLC
Trigger: GCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAAGTTCACGCAAAGAATCTGCTCCACAAGTGTTGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074856.13
CDS CAA 90 bp CATCAGCCAAGACGTGATTATGCATCAGGTCAGTGCCTTGCCATGTaGAGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGCAATAAGCTT +
Preference number: 6 (lower is better)
Translates to: HQPRRDYASGQCLAM*SSGSGASLHLCNKL
Trigger: AAGCTTATTGCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp GCTGGCTGGTGCAGGACACCAGAATCCGCTCGATCATaGTCCCTGATATCTCAAATGCATTCCTATGGTTTT +
Preference number: 6 (lower is better)
Translates to: AGWCRTPESARS*SLISQMHSYGF
Trigger: AAAACCATAGGAATGCATTTGAGATATCAGGGAGCATGATCGAGCGGATTCTGGTGTCCTGCACCAGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS GCA 72 bp CTTCTTCTGGAAGCAACACTTGTGGAGCAGATTCTTTaGGTGAACTTGAGTTCAGGGTCTGGCGCGTCTTTG +
Preference number: 6 (lower is better)
Translates to: LLLEATLVEQIL*VNLSSGSGASL
Trigger: CAAAGACGCGCCAGACCCTGAACTCAAGTTCACGCAAAGAATCTGCTCCACAAGTGTTGCTTCCAGAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074856.13
CDS GCA 72 bp TCTTTAGAACCTTCCTCACCAGCTTCTCTAAGTCCTTaGGGGCCCTCTGTTCCTCCTCTAAGGACTTCTTCA +
Preference number: 6 (lower is better)
Translates to: SLEPSSPASLSP*GPSVPPLRTSS
Trigger: TGAAGAAGTCCTTAGAGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGCTGGTGAGGAAGGTTCTAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS CAA 72 bp TTCTTTAGAACCTTCCTCACCAGCTTCTCTAAGTCCTaGCGGGCCCTCTGTTCCTCCTCTAAGGACTTCTTC +
Preference number: 6 (lower is better)
Translates to: FFRTFLTSFSKS*RALCSSSKDFF
Trigger: GAAGAAGTCCTTAGAGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGCTGGTGAGGAAGGTTCTAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS CAA 72 bp GAGAAAGGCTACTGCGACGACCCAAGGAGTCTAGACTaGATTGGTCGTCATCAGCCAAGACGTGATTATGCA +
Preference number: 6 (lower is better)
Translates to: EKGYCDDPRSLD*IGRHQPRRDYA
Trigger: TGCATAATCACGTCTTGGCTGATGACGACCAATCAAGTCTAGACTCCTTGGGTCGTCGCAGTAGCCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp TCATGTCCAAGCTTCGGTACTGGCTCTGAAGCAATTTaGAAGTCCTACTGTGTGAAGACTGGGATCCCAGGG +
Preference number: 6 (lower is better)
Translates to: SCPSFGTGSEAI*KSYCVKTGIPG
Trigger: CCCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGGACATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 72 bp GAGTCTAGACTTGATTGGTCGTCATCAGCCAAGACGTaGTTATGCATCAGGTCAGTGCCTTGCCATGTTGAG +
Preference number: 6 (lower is better)
Translates to: ESRLDWSSSAKT*LCIRSVPCHVE
Trigger: CTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCAAGTCTAGACTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CCA 72 bp TTAAATATGAAGTGTTTGCTGAACTCAACTTGTCACTaGTCTGCAGTGGCCGCAGGTAGGTGGACAGCACAG +
Preference number: 6 (lower is better)
Translates to: LNMKCLLNSTCH*SAVAAGRWTAQ
Trigger: CTGTGCTGTCCACCTACCTGCGGCCACTGCAGACCAGTGACAAGTTGAGTTCAGCAAACACTTCATATTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 72 bp GTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTTaGCTGTTGGTGTTATCAGTCATGTCCAAGCTTCGG +
Preference number: 6 (lower is better)
Translates to: VCWKLNLARTTS*LLVLSVMSKLR
Trigger: CCGAAGCTTGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp GGTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTaGGCTGTTGGTGTTATCAGTCATGTCCAAGCTTCG +
Preference number: 6 (lower is better)
Translates to: GLLEVKLGSYYQ*AVGVISHVQAS
Trigger: CGAAGCTTGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110904.2
ENSMUST00000110909.9
CDS CAA 72 bp TCAGTATCAAGCTTCGGTACTGGCTCTGAAGCAATTTaGAAGTCCTACTGTGTGAAGACTGGGATCCCAGGG +
Preference number: 6 (lower is better)
Translates to: SVSSFGTGSEAI*KSYCVKTGIPG
Trigger: CCCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGATACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS CAA 90 bp CTTCTTCTGGAAGCAACACTTGTGGAGCAGATTCTTTGCGTGAACTaGAGTTCAGGGTCTGGCGCGTCTTTGCACTTGTGCAATAAGCTT +
Preference number: 6 (lower is better)
Translates to: LLLEATLVEQILCVN*SSGSGASLHLCNKL
Trigger: AAGCTTATTGCACAAGTGCAAAGACGCGCCAGACCCTGAACTCAAGTTCACGCAAAGAATCTGCTCCACAAGTGTTGCTTCCAGAAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074856.13
CDS CAA 90 bp GCACTTGGCTCAGTATCAAGCTTCGGTACTGGCTCTGAAGCAATTTaGAAGTCCTACTGTGTGAAGACTGGGATCCCAGGGAATCAAAAG +
Preference number: 6 (lower is better)
Translates to: ALGSVSSFGTGSEAI*KSYCVKTGIPGNQK
Trigger: CTTTTGATTCCCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGATACTGAGCCAAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS CAA 90 bp TCGTTCATATTCTTTAGAACCTTCCTCACCAGCTTCTCTAAGTCCTaGCGGGCCCTCTGTTCCTCCTCTAAGGACTTCTTCATCTTCTTG +
Preference number: 6 (lower is better)
Translates to: SFIFFRTFLTSFSKS*RALCSSSKDFFIFL
Trigger: CAAGAAGATGAAGAAGTCCTTAGAGGAGGAACAGAGGGCCCGCAAGGACTTAGAGAAGCTGGTGAGGAAGGTTCTAAAGAATATGAACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
CDS CAA 90 bp ATCTTCATTGGTCTGCTGGAAGTTAAACTTGGCTCGTACTACCAGTaGGCTGTTGGTGTTATCAGTCATGTCCAAGCTTCGGTACTGGCT +
Preference number: 6 (lower is better)
Translates to: IFIGLLEVKLGSYYQ*AVGVISHVQASVLA
Trigger: AGCCAGTACCGAAGCTTGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCAGCAGACCAATGAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 72 bp AGCACTTGGCTCAGTATCAAGCTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTACTGTGTGAAGACTGG +
Preference number: 6 (lower is better)
Translates to: STWLSIKLRYWL*SNFEVLLCEDW
Trigger: CCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGATACTGAGCCAAGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211409.2
CDS CAA 72 bp TGGAAGTTAAACTTGGCTCGTACTACCAGTTGGCTGTaGGTGTTATCAGTCATGTCCAAGCTTCGGTACTGG +
Preference number: 6 (lower is better)
Translates to: WKLNLARTTSWL*VLSVMSKLRYW
Trigger: CCAGTACCGAAGCTTGGACATGACTGATAACACCAACAGCCAACTGGTAGTACGAGCCAAGTTTAACTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS CAA 90 bp TGTTATCAGTCATGTCCAAGCTTCGGTACTGGCTCTGAAGCAATTTaGAAGTCCTACTGTGTGAAGACTGGGATCCCAGGGAATCAAAAG +
Preference number: 6 (lower is better)
Translates to: CYQSCPSFGTGSEAI*KSYCVKTGIPGNQK
Trigger: CTTTTGATTCCCTGGGATCCCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGGACATGACTGATAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS TCA 72 bp GTGTTATCAGTCATGTCCAAGCTTCGGTACTGGCTCTaGAGCAATTTTGAAGTCCTACTGTGTGAAGACTGG +
Preference number: 6 (lower is better)
Translates to: VLSVMSKLRYWL*SNFEVLLCEDW
Trigger: CCAGTCTTCACACAGTAGGACTTCAAAATTGCTTCAGAGCCAGTACCGAAGCTTGGACATGACTGATAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110909.9
CDS GCA 72 bp GACTTCGTGCATTCTTCTAGGGACTGTACAAGCACTTaGTGGAAGGAAGATATTTCCTCTAGATTTCCCATT +
Preference number: 6 (lower is better)
Translates to: DFVHSSRDCTST*WKEDISSRFPI
Trigger: AATGGGAAATCTAGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 72 bp TTCGTGCATTCTTCTAGGGACTGTACAAGCACTTGCTaGAAGGAAGATATTTCCTCTAGATTTCCCATTAAA +
Preference number: 6 (lower is better)
Translates to: FVHSSRDCTSTC*KEDISSRFPIK
Trigger: TTTAATGGGAAATCTAGAGGAAATATCTTCCTTCCAGCAAGTGCTTGTACAGTCCCTAGAAGAATGCACGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9
ENSMUST00000210012.2
CDS CCA 72 bp TCGATCATGCTCCCTGATATCTCAAATGCATTCCTATaGTTTTCACTGTCCTCAAGCTTTGTGATTGTCATT +
Preference number: 6 (lower is better)
Translates to: SIMLPDISNAFL*FSLSSSFVIVI
Trigger: AATGACAATCACAAAGCTTGAGGACAGTGAAAACCATAGGAATGCATTTGAGATATCAGGGAGCATGATCGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074856.13
ENSMUST00000098938.9
ENSMUST00000110904.2
ENSMUST00000110909.9