RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGEF5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033542

Ensembl transcript IDs: ENSMUST00000031750.14, ENSMUST00000182924.2

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATaGAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGC +
Preference number: 1 (lower is better)
Translates to: ATLTLPPRNKDCRGT*NEDNLRLKAILEVS
Trigger: GCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR GCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACCAGCACCAAGGCTCATaGCCCACAGTCCCTTTTCCT +
Preference number: 2 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDQHQGS*PTVPFP
Trigger: AGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTG...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR TCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACCAGTCCCTTTTCCTATaGAGAAAGGTTCCCAGAATC +
Preference number: 2 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDQSLFL*RKVPRI
Trigger: GATTCTGGGAACCTTTCTTCATAGGAAAAGGGACTG...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR GCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACTCCCAGAATCCAGTGTaGAGTCACTCAATATTCCCT +
Preference number: 2 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDSQNPV*SHSIFP
Trigger: AGGGAATATTGAGTGACTGCACACTGGATTCTGGGA...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR CAA 90 bp CACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTaGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTG +
Preference number: 2 (lower is better)
Translates to: HKNAKKYWNKGLSSS*GFQKARFLIPRKLL
Trigger: CAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR TCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAACTGGAACAAGGGACTaGGCTCATCCTTGGGATTTC +
Preference number: 2 (lower is better)
Translates to: EERFPESSVQSLNIPYQATGTRD*AHPWDF
Trigger: GAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGT...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR CCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGAACGCAAAGAAGTACTaGAACAAGGGACTGAGCTCA +
Preference number: 2 (lower is better)
Translates to: DCRGTCNEDNLRLKAILENAKKY*NKGLSS
Trigger: TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTT...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAGGAATGCTTGTTCATaGGCTCAGAAGACTCCTCAT +
Preference number: 2 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHRNACS*AQKTPH
Trigger: ATGAGGAGTCTTCTGAGCTCATGAACAAGCATTCCT...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR TCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGAGGAATGCTTGTTCATaGGCTCAGAAGACTCCTCAT +
Preference number: 2 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQRNACS*AQKTPH
Trigger: ATGAGGAGTCTTCTGAGCTCATGAACAAGCATTCCT...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR-3UTR CAA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGGACTGAGCTCATCCTaGGGATTTCAGAAGGCCAGG +
Preference number: 3 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEGLSSS*GFQKAR
Trigger: CCTGGCCTTCTGAAATCCCAAGGATGAGCTCAGTCC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR GCA 72 bp AATGCCACCCTCACATTGCCACCAAGAAACAAGGACTaGAGGGGCACATGCAATGAGGACAATCTCCGATTG +
Preference number: 3 (lower is better)
Translates to: NATLTLPPRNKD*RGTCNEDNLRL
Trigger: CAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR GCA 72 bp TACCATCTGGTAGTGGAAGTACAGCACCAAGGCTCATaGCCCACAGTCCCTTTTCCTATGAAGAAAGGTTCC +
Preference number: 3 (lower is better)
Translates to: YHLVVEVQHQGS*PTVPFPMKKGS
Trigger: GGAACCTTTCTTCATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAGATGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR TCA 72 bp AGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTaGGCTCATCCTTGGGATTTCAGAAGGCCAGGTTCC +
Preference number: 3 (lower is better)
Translates to: STKTQRSTGTRD*AHPWDFRRPGS
Trigger: GGAACCTGGCCTTCTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR TCA 72 bp GCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATaGGGACAATCTCCGATTGAAAGCTATTCTAGAGGT +
Preference number: 3 (lower is better)
Translates to: ATKKQGLQGHMQ*GQSPIESYSRG
Trigger: ACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR GCA 72 bp CTGCAGCAGGTTTCTAGGACCAGCCATTTCCAGGAATaGTTGTTCATGAGCTCAGAAGACTCCTCATCAAGA +
Preference number: 3 (lower is better)
Translates to: LQQVSRTSHFQE*LFMSSEDSSSR
Trigger: TCTTGATGAGGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAACCTGCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR CCA 72 bp ATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTaGAACAAGGGACTGAGCTCATCCTTGGGATTTCAG +
Preference number: 3 (lower is better)
Translates to: IFPTKHKNAKKY*NKGLSSSLGFQ
Trigger: CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACTCTTCCACCTCCTCCTaGTCTCCCAGGAGCCCACCA +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDSSTSS*SPRSPP
Trigger: TGGTGGGCTCCTGGGAGAGCAGGAGGAGGTGGAAGA...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGAGGGCGGTGCTGCCTTaGCACAGTGGAGTCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMRAVLP*HSGVRN
Trigger: GTTCCTGACTCCACTGTGGCAAGGCAGCACCGCCCT...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAACTCGATGGGCTTCCTTaGGGTTCTGAGCACGGACCT +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQLDGLP*GSEHGP
Trigger: AGGTCCGTGCTCAGAACCTCAAGGAAGCCCATCGAG...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGACTGATGATCCTGGTTaGACAGGGTGCCCCGCAGCT +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMTDDPG*TGCPAA
Trigger: AGCTGCGGGGCACCCTGTCCAACCAGGATCATCAGT...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGGGGTCTCGGTCTTCTTaGGCTTCAGGATCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMGSRSS*ASGSKA
Trigger: TGCCTTGGATCCTGAAGCTCAAGAAGACCGAGACCC...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGGGCAGAGGGCGGTGCTaGCTTGCCACAGTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRGRGRC*LATVES
Trigger: TGACTCCACTGTGGCAAGGCAGCACCGCCCTCTGCC...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGTCACATGGCCCACAATaGTGTGGAGTGTCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMSHGPQ*CGVSAE
Trigger: CTCAGCTGACACTCCACATCATTGTGGGCCATGTGA...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACGTAGAGGCTACTTCATaGAGAAGGCCATCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDVEATS*RRPSLS
Trigger: GGAGAGGGATGGCCTTCTTCATGAAGTAGCCTCTAC...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAAGGCAGATCGTCTAAATaGTCCTCTCACTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQGRSSK*SSHWWL
Trigger: GAGCCACCAGTGAGAGGATCATTTAGACGATCTGCC...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATTCACTGCTACTTTCTaGTGTCCTTGCTGGGTCGCG +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQFTATF*CPCWVA
Trigger: CGCGACCCAGCAAGGACATCAGAAAGTAGCAGTGAA...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGCCCTGGGGAGACACTaGACTCAAGGGCCGTCAGCT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHALGRH*TQGPSA
Trigger: AGCTGACGGCCCTTGAGTTCAGTGTCTCCCCAGGGC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp ATAGGTCTGTCCACAACTTACATCCGGCCAGCTCTGAATCTGCACTGTAGTAGCCTCGATGGGCTTCCTTaGGGTTCTGAGCACGGACCT +
Preference number: 4 (lower is better)
Translates to: IGLSTTYIRPALNLHCSSLDGLP*GSEHGP
Trigger: AGGTCCGTGCTCAGAACCTCAAGGAAGCCCATCGAG...GCTACTACAGTGCAGATTCAGAGCTGGCCGGATGTAAGTTGTGGACAGACCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp TTGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTTCCTGGACAGCACATaGCAAGAGCTCAGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: LGFQKARFLIPRKLLQQVFLDST*QELRGS
Trigger: GCTGCCCCTGAGCTCTTGGCATGTGCTGTCCAGGAA...AACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCAGGGCGGTGCTGCCTTaGCACAGTGGAGTCAGGAAC +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSRAVLP*HSGVRN
Trigger: GTTCCTGACTCCACTGTGGCAAGGCAGCACCGCCCT...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAAGGAGACAGTGGGTGGTaGAGAAACATTTGCAGGAGA +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQGDSGW*RNICRR
Trigger: TCTCCTGCAAATGTTTCTTCACCACCCACTGTCTCC...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp ATAGGTCTGTCCACAACTTACATCCGGCCAGCTCTGAATCTGCACTGTAGTAGCGTAGCTGGGAGGAGATaGGCTTGGAGCAACGTCTTG +
Preference number: 4 (lower is better)
Translates to: IGLSTTYIRPALNLHCSSVAGRR*AWSNVL
Trigger: CAAGACGTTGCTCCAAGCTCATCTCCTCCCAGCTAC...GCTACTACAGTGCAGATTCAGAGCTGGCCGGATGTAAGTTGTGGACAGACCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp ATAGGTCTGTCCACAACTTACATCCGGCCAGCTCTGAATCTGCACTGTAGTAGCTGTCCTCTCCTGGTCTaGTCCCTTCCACTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: IGLSTTYIRPALNLHCSSCPLLV*SLPLLS
Trigger: AGACAGCAGTGGAAGGGAGCAGACCAGGAGAGGACA...GCTACTACAGTGCAGATTCAGAGCTGGCCGGATGTAAGTTGTGGACAGACCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGGTGAGGCCAGCTGGATaGCTTCTCCAGTTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRVRPAG*LLQLVV
Trigger: CACCACCAACTGGAGAAGGCATCCAGCTGGCCTCAC...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCCTTGCTGTCCTCTCCTaGTCTGCTCCCTTCCACTGC +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSLAVLS*SAPFHC
Trigger: GCAGTGGAAGGGAGCAGACCAGGAGAGGACAGCAAG...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAAGATGCCTTCTCCAGTTaGTGGTGGAGGGGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQDAFSS*WWRGFS
Trigger: AGAAAAACCCCTCCACCACCAACTGGAGAAGGCATC...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGAGCCCTTTTGCTTGTTaGGTACCTGGCCCAGAACAA +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMSPFAC*VPGPEQ
Trigger: TTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCT...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp ATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGTTTCCTTCTCAGCCCTaGGGAGACACTGAACTCAAG +
Preference number: 4 (lower is better)
Translates to: MPPSHCHQETRTAGAHAMFPSQP*GDTELK
Trigger: CTTGAGTTCAGTGTCTCCCCAGGGCTGAGAAGGAAA...CATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACCAAAGACATAAGTTCTaGCTGCAATTCTGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDQRHKF*LQFCPH
Trigger: GTGGGGGCAGAATTGCAGTCAGAACTTATGTCTTTG...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAAAGAGTTCCTTCCTCCTaGATTTCTACTTCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQRVPSS*ISTSCP
Trigger: GGGACAGGAAGTAGAAATTCAGGAGGAAGGAACTCT...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCATGTGGAGTGTCAGCTaGGGCAGAGGCTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTMWSVS*GRGCWG
Trigger: ACCCCAACAGCCTCTGCCTCAGCTGACACTCCACAT...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp ATAGGTCTGTCCACAACTTACATCCGGCCAGCTCTGAATCTGCACTGTAGTAGCCTCTTCAGTGAGCCCTaGCTCATCCTTAGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: IGLSTTYIRPALNLHCSSLFSEP*LILSGR
Trigger: CCTACCACTAAGGATGAGTCAGGGCTCACTGAAGAG...GCTACTACAGTGCAGATTCAGAGCTGGCCGGATGTAAGTTGTGGACAGACCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCGCTTCCTTGAGGTTCTaGGCACGGACCTCTGGGTTT +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSASLRF*ARTSGF
Trigger: AAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGC...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCTCTGCTCCCTTCCACTaGTGTCTGCCCACCACTATC +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSSAPFH*CLPTTI
Trigger: GATAGTGGTGGGCAGACAGCAGTGGAAGGGAGCAGA...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp TTGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTGACTACCATGAGGACTaGTGGGCCTCTCTGGATTTG +
Preference number: 4 (lower is better)
Translates to: LGFQKARFLIPRKLLQQVDYHED*WASLDL
Trigger: CAAATCCAGAGAGGCCCAGCAGTCCTCATGGTAGTC...AACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp CACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGAGGCAGAGGGCGGTGCTaGCTTGCCACAGTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: HSIFPTKHKNAKKYWNKGGRGRC*LATVES
Trigger: TGACTCCACTGTGGCAAGGCAGCACCGCCCTCTGCC...TCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACACAGGAAACCAGCCTTaGTCACCATCTGAGAGTCTT +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDTGNQP*SPSESL
Trigger: AAGACTCTCAGATGGTGAGCAAGGCTGGTTTCCTGT...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACCTGTCTTTAAGGCTCTaGATTACAGCTTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDLSLRL*ITASCW
Trigger: CCAGCAGGAAGCTGTAATCCAGAGCCTTAAAGACAG...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGTGTTGTATCTCAGTCTaGAAGGGATGGAGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMCCISV*KGWRSV
Trigger: CACAGACCTCCATCCCTTCCAGACTGAGATACAACA...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGTGTATAACTCCTCCCTaGATACTCTTGCTTCTCCCC +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMCITPP*ILLLLP
Trigger: GGGGAGAAGCAAGAGTATCCAGGGAGGAGTTATACA...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAACTGATGATCCTGGTTaGACAGGGTGCCCCGCAGCT +
Preference number: 4 (lower is better)
Translates to: EERFPESSVQSLNIPYQATDDPG*TGCPAA
Trigger: AGCTGCGGGGCACCCTGTCCAACCAGGATCATCAGT...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACAGACGTGTGATGCGTTaGAAGGGCAGTATCAGAAAG +
Preference number: 4 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDRRVMR*KGSIRK
Trigger: CTTTCTGATACTGCCCTTCCAACGCATCACACGTCT...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGCACACAGGCTCCTTCTaGATCTGTGGAATATCAGCC +
Preference number: 4 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRHTGSF*ICGISA
Trigger: GGCTGATATTCCACAGATTCAGAAGGAGCCTGTGTG...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGGAGAAATGGGTTGGTaGGACCATTCTGTTGGCTCC +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEGEMGW*DHSVGS
Trigger: GGAGCCAACAGAATGGTCTCACCAACCCATTTCTCC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCGGCAGATCGTCTAAATaGTCCTCTCACTGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSGRSSK*SSHWWL
Trigger: GAGCCACCAGTGAGAGGATCATTTAGACGATCTGCC...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGGAAAACAACAGAATCTaGAGAGCCAGGAAGTCTTCC +
Preference number: 4 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMENNRI*RARKSS
Trigger: GGAAGACTTCCTGGCTCTTCAGATTCTGTTGTTTTC...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGCCCTGGGGAGACACTaGACTCAAGGGCCGTCAGCT +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQALGRH*TQGPSA
Trigger: AGCTGACGGCCCTTGAGTTCAGTGTCTCCCCAGGGC...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGCTTCCTTGAGGTTCTaGGCACGGACCTCTGGGTTT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHASLRF*ARTSGF
Trigger: AAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp TTGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTGCAGCTGTTTCCCCTaGCTAAGCAGTTCACTTCCA +
Preference number: 4 (lower is better)
Translates to: LGFQKARFLIPRKLLQQVCSCFP*LSSSLP
Trigger: TGGAAGTGAACTGCTTAGGCAGGGGAAACAGCTGCA...AACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCACTGGAAGAGAAGGCTTaGTGTCCTCTCCTGGTCTGC +
Preference number: 4 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSLEEKA*CPLLVC
Trigger: GCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAG...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGCTCCCTGGATACTCTTaGTTCTCCCCCTGGACTTTG +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILELPGYS*FSPWTL
Trigger: CAAAGTCCAGGGGGAGAAGCAAGAGTATCCAGGGAG...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAAGTGAGGCCAGCTGGATaGCTTCTCCAGTTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKVRPAG*LLQLVV
Trigger: CACCACCAACTGGAGAAGGCATCCAGCTGGCCTCAC...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGTGCCCTGTGCGTTGTaGAGGAGAAAGAGACGGAAG +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHVPCAL*RRKRRK
Trigger: CTTCCGTCTCTTTCTCCTGCACAACGCACAGGGCAC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp ATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGCACTTTGAGTCTCAGTaGGGAAGAGGAATTCCACTT +
Preference number: 4 (lower is better)
Translates to: MPPSHCHQETRTAGAHAMHFESQ*GRGIPL
Trigger: AAGTGGAATTCCTCTTCCGCACTGAGACTCAAAGTG...CATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCGTGAGACCATTCTGTTaGCTCCAGTGCAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSVRPFC*LQCRSL
Trigger: CAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCAC...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCAGGCAGGGGGAGAAATaGGTTGGTGAGACCATTCTG +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSRQGEK*VGETIL
Trigger: CAGAATGGTCTCACCAACCCATTTCTCCCCCTGCCT...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGAGGTGGCACATaGGTACCTGGAGGATTTTGC +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEVRGGT*VPGGFC
Trigger: GCAAAATCCTCCAGGTACCCATGTGCCACCTCTGAC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAACCTTTAGAAGATCTATaGAGCCCTGAACTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQPLEDL*SPELRV
Trigger: GACCCTAAGTTCAGGGCTCCATAGATCTTCTAAAGG...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCGCCTTCTCCAGTTGGTaGTGGAGGGGTTTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSAFSSW*WRGFSE
Trigger: CTCAGAAAAACCCCTCCACCACCAACTGGAGAAGGC...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp ATAGGTCTGTCCACAACTTACATCCGGCCAGCTCTGAATCTGCACTGTAGTAGCATGAACTCTACCTGCTaGACAGGAAACCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: IGLSTTYIRPALNLHCSSMNSTC*TGNQPC
Trigger: GCAAGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCAT...GCTACTACAGTGCAGATTCAGAGCTGGCCGGATGTAAGTTGTGGACAGACCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR CAA 72 bp GCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTaGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGA +
Preference number: 4 (lower is better)
Translates to: AKKYWNKGLSSS*GFQKARFLIPR
Trigger: TCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR CAA 72 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATaGAAAGCTATTCTAGAGGTCAGCAGGTTCACCTTC +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLR*KAILEVSRFTF
Trigger: GAAGGTGAACCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCAAGCCTTCTTGCCCTTaGTTTTCTTGTGTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSKPSCP*FSCVAS
Trigger: GGAGGCCACACAAGAAAATCAAGGGCAAGAAGGCTT...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATATTACACCTACTGGTaGGAGGCAAAGATTCTGTTG +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQYYTYW*EAKILL
Trigger: CAACAGAATCTTTGCCTCTCACCAGTAGGTGTAATA...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGCCTTCCACTGCTGTCTaGCCACCACTATCCCCATTC +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQPSTAV*PPLSPF
Trigger: GAATGGGGATAGTGGTGGGCAGACAGCAGTGGAAGG...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTCCCTGGATACTCTTaGTTCTCCCCCTGGACTTTG +
Preference number: 4 (lower is better)
Translates to: EERFPESSVQSLNIPYQALPGYS*FSPWTL
Trigger: CAAAGTCCAGGGGGAGAAGCAAGAGTATCCAGGGAG...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGTCACTTCCACTGCCCTaGGTCTGCTCAGTCTCACCA +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQSLPLP*VCSVSP
Trigger: TGGTGAGACTGAGCAGACCCAGGGCAGTGGAAGTGA...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAGCCTTCTCCAGTTGGTaGTGGAGGGGTTTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: EERFPESSVQSLNIPYQAAFSSW*WRGFSE
Trigger: CTCAGAAAAACCCCTCCACCACCAACTGGAGAAGGC...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGTGCTTGTTGGGTACCTaGCCCAGAACAACCTGTTCA +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRCLLGT*PRTTCS
Trigger: TGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCA...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGATGAACTCTACCTGCTaGACAGGAAACCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRMNSTC*TGNQPC
Trigger: GCAAGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCAT...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAATCCAGTGCAGGAGCTTaGGGGCTCAGTTCCTCACAC +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQSSAGA*GLSSSH
Trigger: GTGTGAGGAACTGAGCCCTCAAGCTCCTGCACTGGA...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGATGAGAGAAAGAGAGTaGCATTCCCAGAGAGTCTGG +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEMRERE*HSQRVW
Trigger: CCAGACTCTCTGGGAATGTCACTCTCTTTCTCTCAT...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGAGCAGTAGAGGAGTCTaGAAAGACGATACCATCCCT +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILESSRGV*KDDTIP
Trigger: AGGGATGGTATCGTCTTTTCAGACTCCTCTACTGCT...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATTATTAAATTCCTCCTaGGGGGCAGATCGTCTAAAT +
Preference number: 4 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQLLNSS*GADRLN
Trigger: ATTTAGACGATCTGCCCCTCAGGAGGAATTTAATAA...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAATTCACTGCTACTTTCTaGTGTCCTTGCTGGGTCGCG +
Preference number: 4 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKFTATF*CPCWVA
Trigger: CGCGACCCAGCAAGGACATCAGAAAGTAGCAGTGAA...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGAGTAGCTGGGAGGAGATaGGCTTGGAGCAACGTCTTG +
Preference number: 4 (lower is better)
Translates to: HSIFPTKHKNAKKYWNKGVAGRR*AWSNVL
Trigger: CAAGACGTTGCTCCAAGCTCATCTCCTCCCAGCTAC...TCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCCGAAGCTTTTCACTTTaGGTCTCAGTGCGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTRSFSL*VSVRKR
Trigger: CCTCTTCCGCACTGAGACTCAAAGTGAAAAGCTTCG...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp CTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGCAGTTCACTTCCACTaGCCTGGGTCTGCTCAGTCT +
Preference number: 4 (lower is better)
Translates to: LNIPYQAQKRKEVLEQGTAVHFH*PGSAQS
Trigger: AGACTGAGCAGACCCAGGGCAGTGGAAGTGAACTGC...AGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGCTTTGGATCTGTCCCTaGTTCTGTTCTTCCTCGTTG +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILELWICP*FCSSSL
Trigger: CAACGAGGAAGAACAGAAGCAGGGACAGATCCAAAG...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCAATTACAGCTTCCTGCTaGTCTGGAGTGTTACAGGCC +
Preference number: 4 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSITASC*SGVLQA
Trigger: GGCCTGTAACACTCCAGACCAGCAGGAAGCTGTAAT...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCTACCATGAGGACTGCTaGGCCTCTCTGGATTTGAAG +
Preference number: 4 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTYHEDC*ASLDLK
Trigger: CTTCAAATCCAGAGAGGCCCAGCAGTCCTCATGGTA...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACATGGAGGTCTGTGTATaGTTGGGGCTTTCTGGGGTA +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHMEVCV*LGLSGV
Trigger: TACCCCAGAAAGCCCCAACCATACACAGACCTCCAT...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGATGCCTTCTCCAGTTaGTGGTGGAGGGGTTTTTCT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHDAFSS*WWRGFS
Trigger: AGAAAAACCCCTCCACCACCAACTGGAGAAGGCATC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCATGCTTGTTGGGTACCTaGCCCAGAACAACCTGTTCA +
Preference number: 4 (lower is better)
Translates to: EERFPESSVQSLNIPYQACLLGT*PRTTCS
Trigger: TGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCA...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAGCCCTTTTGCTTGTTaGGTACCTGGCCCAGAACAA +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHSPFAC*VPGPEQ
Trigger: TTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCT...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCGAAGCTGTCCAGTCTTaGTTATTAGGTCTTGGCTTG +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSEAVQS*LLGLGL
Trigger: CAAGCCAAGACCTAATAATCAAGACTGGACAGCTTC...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGTTAGTGGTAGGTCTCTaGAGGTCTGGGATCCAAGGA +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQLVVGL*RSGIQG
Trigger: TCCTTGGATCCCAGACCTTCAGAGACCTACCACTAA...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGGAAAACAACAGAATCTaGAGAGCCAGGAAGTCTTCC +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRENNRI*RARKSS
Trigger: GGAAGACTTCCTGGCTCTTCAGATTCTGTTGTTTTC...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp ATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGCAGCCATCGAGATTGTaGAATAAGTGGGAAAATTTT +
Preference number: 4 (lower is better)
Translates to: MPPSHCHQETRTAGAHAMQPSRL*NKWENF
Trigger: AAAATTTTCCCACTTATTTCACAATCTCGATGGCTG...CATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCTGGATTACAGCTTCCTaGTGGTCTGGAGTGTTACAG +
Preference number: 4 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTWITAS*WSGVLQ
Trigger: CTGTAACACTCCAGACCAGCAGGAAGCTGTAATCCA...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGACATAAGTTCTGACTaGAATTCTGCCCCCACTCTG +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHDISSD*NSAPTL
Trigger: CAGAGTGGGGGCAGAATTGCAGTCAGAACTTATGTC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGCCCGGAAACTGCTGTTaGTATTCATTAGACTTTGGA +
Preference number: 4 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRPGNCC*YSLDFG
Trigger: TCCAAAGTCTAATGAATAGCAACAGCAGTTTCCGGG...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACACAGGAAACCAGCCTTaGTCACCATCTGAGAGTCTT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHTGNQP*SPSESL
Trigger: AAGACTCTCAGATGGTGAGCAAGGCTGGTTTCCTGT...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGCTTGATTTTCTTGTGTaGCCTCCAACTGCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRLDFLV*PPTAAV
Trigger: AACAGCTGCAGTTGGAGGCCACACAAGAAAATCAAG...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GTTTCTAGGACCAGCCATTTCCAGGAATGCTTGTTCATGAGCTCAGAAGACTCCCTCCTTCTGAATCTGTaGAATATCAGCCACAGAGGA +
Preference number: 4 (lower is better)
Translates to: VSRTSHFQECLFMSSEDSLLLNL*NISHRG
Trigger: TCCTCTGTGGCTGATATTCCACAGATTCAGAAGGAG...GGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGTTTCCTTCTCAGCCCTaGGGAGACACTGAACTCAAG +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQFPSQP*GDTELK
Trigger: CTTGAGTTCAGTGTCTCCCCAGGGCTGAGAAGGAAA...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
3UTR CAA 72 bp CAGCAGGTTTCTAGGACCAGCCATTTCCAGGAATGCTaGTTCATGAGCTCAGAAGACTCCTCATCAAGAACA +
Preference number: 4 (lower is better)
Translates to: QQVSRTSHFQEC*FMSSEDSSSRT
Trigger: TGTTCTTGATGAGGAGTCTTCTGAGCTCATGAACAAGCATTCCTGGAAATGGCTGGTCCTAGAAACCTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGAGGCCTATACATCCTTaGGATATAAGAGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRRPIHP*DIRGRD
Trigger: ATCTCTTCCTCTTATATCTCAAGGATGTATAGGCCT...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAACTCTTCAGTGAGCCCTaGCTCATCCTTAGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQLFSEP*LILSGR
Trigger: CCTACCACTAAGGATGAGTCAGGGCTCACTGAAGAG...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACGCCCACCAAAACAAATaGCTTCGTTCAGAGTTCCTT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHAHQNK*LRSEFL
Trigger: AAGGAACTCTGAACGAAGGCATTTGTTTTGGTGGGC...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR GCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGCCCGGAAACTGCTGTTaGTATTCATTAGACTTTGGA +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEPGNCC*YSLDFG
Trigger: TCCAAAGTCTAATGAATAGCAACAGCAGTTTCCGGG...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGGAAATGAACTCTACCTaGTGGACAGGAAACCAGCCT +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQEMNST*WTGNQP
Trigger: AGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCATTTC...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp TTGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTGTTGTCTAGTTTGCTaGGTATGTCTAGCCATTCTT +
Preference number: 4 (lower is better)
Translates to: LGFQKARFLIPRKLLQQVCCLVC*VCLAIL
Trigger: AAGAATGGCTAGACATACCCAGCAAACTAGACAACA...AACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACCTTTAGAAGATCTATaGAGCCCTGAACTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: EERFPESSVQSLNIPYQAPLEDL*SPELRV
Trigger: GACCCTAAGTTCAGGGCTCCATAGATCTTCTAAAGG...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTATGGAGGTCTGTGTATaGTTGGGGCTTTCTGGGGTA +
Preference number: 4 (lower is better)
Translates to: LNIPYQAQKRKEVLEQGTMEVCV*LGLSGV
Trigger: TACCCCAGAAAGCCCCAACCATACACAGACCTCCAT...AGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGTATAAGAGGAAGAGATaGAGGGATGGTAGAACTCAG +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEYKRKR*RDGRTQ
Trigger: CTGAGTTCTACCATCCCTCCATCTCTTCCTCTTATA...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGTTCTCCAGTTGGTGGTaGAGGGGTTTTTCTGAGTTC +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQFSSWW*RGFSEF
Trigger: GAACTCAGAAAAACCCCTCCACCACCAACTGGAGAA...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAAAGACGTGTGATGCGTTaGAAGGGCAGTATCAGAAAG +
Preference number: 4 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKRRVMR*KGSIRK
Trigger: CTTTCTGATACTGCCCTTCCAACGCATCACACGTCT...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGGAGGCACTGAACTTGTaGGGAGTCATAACACTCAAG +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQEALNL*GVITLK
Trigger: CTTGAGTGTTATGACTCCCCACAAGTTCAGTGCCTC...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGGAAGCTGTCCAGTCTTaGTTATTAGGTCTTGGCTTG +
Preference number: 4 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQEAVQS*LLGLGL
Trigger: CAAGCCAAGACCTAATAATCAAGACTGGACAGCTTC...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTATTACACCTACTGGTaGGAGGCAAAGATTCTGTTG +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHYYTYW*EAKILL
Trigger: CAACAGAATCTTTGCCTCTCACCAGTAGGTGTAATA...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAATTAGTGGTAGGTCTCTaGAGGTCTGGGATCCAAGGA +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQLVVGL*RSGIQG
Trigger: TCCTTGGATCCCAGACCTTCAGAGACCTACCACTAA...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGAGCCAGAAGGATTTCCTaGCTTGTCTCCATATCCGAA +
Preference number: 4 (lower is better)
Translates to: HSIFPTKHKNAKKYWNKGARRIS*LVSISE
Trigger: TTCGGATATGGAGACAAGCCAGGAAATCCTTCTGGC...TCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTATCCATGGAGACAGTaGGTGGTGAAGAAACATTTG +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHYPWRQ*VVKKHL
Trigger: CAAATGTTTCTTCACCACCCACTGTCTCCATGGATA...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGCAATCAGCTCAAACTTaGCCTCTTGCAGTTTTTGAT +
Preference number: 4 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEQSAQT*PLAVFD
Trigger: ATCAAAAACTGCAAGAGGCCAAGTTTGAGCTGATTG...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAGGCCTATACATCCTTaGGATATAAGAGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHRPIHP*DIRGRD
Trigger: ATCTCTTCCTCTTATATCTCAAGGATGTATAGGCCT...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGAAATGAACTCTACCTaGTGGACAGGAAACCAGCCT +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQEMNST*WTGNQP
Trigger: AGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCATTTC...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAATTCTCCAGTTGGTGGTaGAGGGGTTTTTCTGAGTTC +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQFSSWW*RGFSEF
Trigger: GAACTCAGAAAAACCCCTCCACCACCAACTGGAGAA...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAATCTCTGGATTTGAAGTaGATTCTTCAGAGTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKSLDLK*ILQSPV
Trigger: AACAGGACTCTGAAGAATTCACTTCAAATCCAGAGA...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR TCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACCAGCCATCGAGATTGTaGAATAAGTGGGAAAATTTT +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHQPSRL*NKWENF
Trigger: AAAATTTTCCCACTTATTTCACAATCTCGATGGCTG...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CCA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAACAATCAGCTCAAACTTaGCCTCTTGCAGTTTTTGAT +
Preference number: 4 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKQSAQT*PLAVFD
Trigger: ATCAAAAACTGCAAGAGGCCAAGTTTGAGCTGATTG...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR GCA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTTTCTCTTTGCTAACTaGCAAAGTCAAAGACATAAG +
Preference number: 4 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHFLFAN*QSQRHK
Trigger: CTTATGTCTTTGACTTTGGCAGTTAGCAAAGAGAAA...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAATATAAGAGGAAGAGATaGAGGGATGGTAGAACTCAG +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQYKRKR*RDGRTQ
Trigger: CTGAGTTCTACCATCCCTCCATCTCTTCCTCTTATA...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR TCA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAATTATTAAATTCCTCCTaGGGGGCAGATCGTCTAAAT +
Preference number: 4 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQLLNSS*GADRLN
Trigger: ATTTAGACGATCTGCCCCTCAGGAGGAATTTAATAA...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 90 bp GAAGGCTTGCTGTCCTCTCCTGGTCTGCTCCCTTCCACTGCTGTCTaGCCACCACTATCCCCATTCCCTTGGACCCTGTCACCTGAGTCT +
Preference number: 5 (lower is better)
Translates to: EGLLSSPGLLPSTAV*PPLSPFPWTLSPES
Trigger: AGACTCAGGTGACAGGGTCCAAGGGAATGGGGATAGTGGTGGGCAGACAGCAGTGGAAGGGAGCAGACCAGGAGAGGACAGCAAGCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 90 bp CTACGGAAGCCACTGGAAGAGAAGGCTTGCTGTCCTCTCCTGGTCTaGTCCCTTCCACTGCTGTCTGCCCACCACTATCCCCATTCCCTT +
Preference number: 5 (lower is better)
Translates to: LRKPLEEKACCPLLV*SLPLLSAHHYPHSL
Trigger: AAGGGAATGGGGATAGTGGTGGGCAGACAGCAGTGGAAGGGAGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTTCCGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 90 bp GGCAGGGGGAGAAATGGGTTGGTGAGACCATTCTGTTGGCTCCAGTaGAGGAGCTTGAGGGCTCAGTTCCTCACACACAGGCTCCTTCTG +
Preference number: 5 (lower is better)
Translates to: GRGRNGLVRPFCWLQ*RSLRAQFLTHRLLL
Trigger: CAGAAGGAGCCTGTGTGTGAGGAACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAACCCATTTCTCCCCCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 90 bp GAGGGCTGTGAGGGTTGGCTGTGTCAGAGGTGGCACATGGGTACCTaGAGGATTTTGCGGGTAGTGGAGGAGTCTCACATGGCCCACAAT +
Preference number: 5 (lower is better)
Translates to: EGCEGWLCQRWHMGT*RILRVVEESHMAHN
Trigger: ATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAAAATCCTCCAGGTACCCATGTGCCACCTCTGACACAGCCAACCCTCACAGCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 90 bp CTGGAGGATTTTGCGGGTAGTGGAGGAGTCTCACATGGCCCACAATaGTGTGGAGTGTCAGCTGAGGCAGAGGCTGTTGGGGTCTCCTCA +
Preference number: 5 (lower is better)
Translates to: LEDFAGSGGVSHGPQ*CGVSAEAEAVGVSS
Trigger: TGAGGAGACCCCAACAGCCTCTGCCTCAGCTGACACTCCACATCATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAAAATCCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 90 bp AGCAGTTCACTTCCACTGCCCTGGGTCTGCTCAGTCTCACCAGGGTaGGTTTTGCAGGGAGGCCAAGATCCTCTAGGGATTGAGGTGTCT +
Preference number: 5 (lower is better)
Translates to: SSSLPLPWVCSVSPG*VLQGGQDPLGIEVS
Trigger: AGACACCTCAATCCCTAGAGGATCTTGGCCTCCCTGCAAAACTCACCCTGGTGAGACTGAGCAGACCCAGGGCAGTGGAAGTGAACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 90 bp AGCCCTTTTGCTTGTTGGGTACCTGGCCCAGAACAACCTGTTCACTaGTACTTTCTGATGTCCTTGCTGGGTCGCGTCTGTGAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SPFACWVPGPEQPVH*YFLMSLLGRVCEAS
Trigger: GCTGGCCTCACAGACGCGACCCAGCAAGGACATCAGAAAGTAGCAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 90 bp GAACAATGTACCTGGGGAGAGAACCTCAGGATCTACGGAAGCCACTaGAAGAGAAGGCTTGCTGTCCTCTCCTGGTCTGCTCCCTTCCAC +
Preference number: 5 (lower is better)
Translates to: EQCTWGENLRIYGSH*KRRLAVLSWSAPFH
Trigger: GTGGAAGGGAGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTTCCGTAGATCCTGAGGTTCTCTCCCCAGGTACATTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAACTCCAGTGCAGGAGCTaGAGGGCTCAGTTCCTCACA +
Preference number: 5 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQLQCRS*RAQFLT
Trigger: TGTGAGGAACTGAGCCCTCAAGCTCCTGCACTGGAG...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GAATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAAAGGTCTACGAAGGCCTaGCCGGTTCCAGCCCTTTTG +
Preference number: 5 (lower is better)
Translates to: ECHPHIATKKQGLQGHMQRSTKA*PVPALL
Trigger: CAAAAGGGCTGGAACCGGCAAGGCCTTCGTAGACCT...TTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp ATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGTCTACGAAGGCCTaGCCGGTTCCAGCCCTTTTG +
Preference number: 5 (lower is better)
Translates to: MPPSHCHQETRTAGAHAMRSTKA*PVPALL
Trigger: CAAAAGGGCTGGAACCGGCAAGGCCTTCGTAGACCT...CATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 90 bp GACTCGATGGGCTTCCTTGAGGTTCTGAGCACGGACCTCTGGGTTTaGAATGAACTCTACCTGCTGGACAGGAAACCAGCCTTGCTCACC +
Preference number: 5 (lower is better)
Translates to: DSMGFLEVLSTDLWV*NELYLLDRKPALLT
Trigger: GGTGAGCAAGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCATTTCAAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGCCCATCGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGACTGGAAGAGAAGGCTaGCTGTCCTCTCCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMTGREG*LSSPGL
Trigger: CAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGT...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp CTGGTAGTGGAAGTACAGCACCAAGGCTCATGCCCCACAGTCCCTTTTCCTATGGGATGCCTTCTCCAGTaGGTGGTGGAGGGGTTTTTC +
Preference number: 5 (lower is better)
Translates to: LVVEVQHQGSCPTVPFPMGCLLQ*VVEGFF
Trigger: GAAAAACCCCTCCACCACCAACTGGAGAAGGCATCC...CATAGGAAAAGGGACTGTGGGGCATGAGCCTTGGTGCTGTACTTCCACTACCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 90 bp AGCTGCAGTTTGGCCGTCTTGACTCGATGGGCTTCCTTGAGGTTCTaGGCACGGACCTCTGGGTTTGAAATGAACTCTACCTGCTGGACA +
Preference number: 5 (lower is better)
Translates to: SCSLAVLTRWASLRF*ARTSGFEMNSTCWT
Trigger: TGTCCAGCAGGTAGAGTTCATTTCAAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGCCCATCGAGTCAAGACGGCCAAACTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 90 bp CTACGAAGGCCTTGCCGGTTCCAGCCCTTTTGCTTGTTGGGTACCTaGCCCAGAACAACCTGTTCACTGCTACTTTCTGATGTCCTTGCT +
Preference number: 5 (lower is better)
Translates to: LRRPCRFQPFCLLGT*PRTTCSLLLSDVLA
Trigger: AGCAAGGACATCAGAAAGTAGCAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 90 bp TTCTGTTCTTCCTCGTTGCCGTTAAACCCCTCTTCCACCTCCTCCTaGTCTCCCAGGAGCCCACCAAAACAAATGCCTTCGTTCAGAGTT +
Preference number: 5 (lower is better)
Translates to: FCSSSLPLNPSSTSS*SPRSPPKQMPSFRV
Trigger: AACTCTGAACGAAGGCATTTGTTTTGGTGGGCTCCTGGGAGAGCAGGAGGAGGTGGAAGAGGGGTTTAACGGCAACGAGGAAGAACAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 90 bp TCTGGGTTTGAAATGAACTCTACCTGCTGGACAGGAAACCAGCCTTaGTCACCATCTGAGAGTCTTACACCCTCCAGCCAGCCATCACTG +
Preference number: 5 (lower is better)
Translates to: SGFEMNSTCWTGNQP*SPSESLTPSSQPSL
Trigger: CAGTGATGGCTGGCTGGAGGGTGTAAGACTCTCAGATGGTGAGCAAGGCTGGTTTCCTGTCCAGCAGGTAGAGTTCATTTCAAACCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 90 bp GATTCTCTGTATACTGAGTGGCTACCCTTCTCTCTTCCACCTCCCTaGATTCCTGGTCCTGTCCCTCCTCTTCTGAATCTCTCAGAACCC +
Preference number: 5 (lower is better)
Translates to: DSLYTEWLPFSLPPP*IPGPVPPLLNLSEP
Trigger: GGGTTCTGAGAGATTCAGAAGAGGAGGGACAGGACCAGGAATCCAGGGAGGTGGAAGAGAGAAGGGTAGCCACTCAGTATACAGAGAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACTTCTGTTCTTCCTCGTaGCCGTTAAACCCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDFCSSS*PLNPSS
Trigger: GGAAGAGGGGTTTAACGGCAACGAGGAAGAACAGAA...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp ACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGAGGACGGGGGTAATGGTTTGTaGTATCTCAGTCTGGAAGGG +
Preference number: 5 (lower is better)
Translates to: TLTLPPRNKDCRGTCNEDGGNGL*YLSLEG
Trigger: CCCTTCCAGACTGAGATACAACAAACCATTACCCCC...GTCCTCATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGGGATGCCTTCTCCAGTaGGTGGTGGAGGGGTTTTTC +
Preference number: 5 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRGCLLQ*VVEGFF
Trigger: GAAAAACCCCTCCACCACCAACTGGAGAAGGCATCC...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCACCGGTTCCAGCCCTTTaGCTTGTTGGGTACCTGGCC +
Preference number: 5 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSPVPAL*LVGYLA
Trigger: GGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGG...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 90 bp CTCACCAGGGTGAGTTTTGCAGGGAGGCCAAGATCCTCTAGGGATTaGGGTGTCTGGGGAGGTTTCTTCCTCTTCTTTCTCTTTGCTAAC +
Preference number: 5 (lower is better)
Translates to: LTRVSFAGRPRSSRD*GVWGGFFLFFLFAN
Trigger: GTTAGCAAAGAGAAAGAAGAGGAAGAAACCTCCCCAGACACCTCAATCCCTAGAGGATCTTGGCCTCCCTGCAAAACTCACCCTGGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGGGTGAGACCATTCTGTaGGCTCCAGTGCAGGAGCTT +
Preference number: 5 (lower is better)
Translates to: GTCNEDNLRLKAILEVSRGETIL*APVQEL
Trigger: AAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACC...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 90 bp AAATCTGAAGAGCTTTCAGGCAAAATTGAAGGTCTACGAAGGCCTTaGCGGTTCCAGCCCTTTTGCTTGTTGGGTACCTGGCCCAGAACA +
Preference number: 5 (lower is better)
Translates to: KSEELSGKIEGLRRP*RFQPFCLLGTWPRT
Trigger: TGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTAGACCTTCAATTTTGCCTGAAAGCTCTTCAGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGTTGCCCTTGATTTTCTaGTGTGGCCTCCAACTGCAG +
Preference number: 5 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRLPLIF*CGLQLQ
Trigger: CTGCAGTTGGAGGCCACACAAGAAAATCAAGGGCAA...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCAGGTACCTGGAGGATTTaGCGGGTAGTGGAGGAGTCT +
Preference number: 5 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSGTWRI*RVVEES
Trigger: AGACTCCTCCACTACCCGCAAAATCCTCCAGGTACC...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGAGGCAAAGATTCTGTaGATCTGCCTGTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEEAKIL*ICLWLE
Trigger: CTCCAGCCACAGGCAGATCAACAGAATCTTTGCCTC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCCAGCCCTTTTGCTTGTaGGGTACCTGGCCCAGAACA +
Preference number: 5 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTQPFCL*GTWPRT
Trigger: TGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTG...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCTCTACCAGCTGCAGTTaGGCCGTCTTGACTCGATGG +
Preference number: 5 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTSTSCS*AVLTRW
Trigger: CCATCGAGTCAAGACGGCCAAACTGCAGCTGGTAGA...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCTACCAGCTGCAGTTaGGCCGTCTTGACTCGATGG +
Preference number: 5 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSSTSCS*AVLTRW
Trigger: CCATCGAGTCAAGACGGCCAAACTGCAGCTGGTAGA...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 90 bp AGCTTGAGGGCTCAGTTCCTCACACACAGGCTCCTTCTGAATCTGTaGAATATCAGCCACAGAGGAAGAAATACCTGGGAACAATGTACC +
Preference number: 5 (lower is better)
Translates to: SLRAQFLTHRLLLNL*NISHRGRNTWEQCT
Trigger: GGTACATTGTTCCCAGGTATTTCTTCCTCTGTGGCTGATATTCCACAGATTCAGAAGGAGCCTGTGTGTGAGGAACTGAGCCCTCAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGGGGGTAATGGTTTGTaGTATCTCAGTCTGGAAGGG +
Preference number: 5 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEGGNGL*YLSLEG
Trigger: CCCTTCCAGACTGAGATACAACAAACCATTACCCCC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAACCGGTTCCAGCCCTTTaGCTTGTTGGGTACCTGGCC +
Preference number: 5 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQPVPAL*LVGYLA
Trigger: GGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGG...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTCCCATCCCCTCCTTaGGTTTCTTCTCCCGGAAAA +
Preference number: 5 (lower is better)
Translates to: EERFPESSVQSLNIPYQALPSPP*VSSPGK
Trigger: TTTTCCGGGAGAAGAAACCAAAGGAGGGGATGGGAG...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp ATGCCACCCTCACATTGCCACCAAGAAACAAGGACTGCAGGGGCACATGCAATGCTCAAACTTGGCCTCTaGCAGTTTTTGATCTTCATG +
Preference number: 5 (lower is better)
Translates to: MPPSHCHQETRTAGAHAMLKLGL*QFLIFM
Trigger: CATGAAGATCAAAAACTGCAAGAGGCCAAGTTTGAG...CATTGCATGTGCCCCTGCAGTCCTTGTTTCTTGGTGGCAATGTGAGGGTGGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTTGGGTCTCGGTCTTCTaGAGCTTCAGGATCCAAGGC +
Preference number: 5 (lower is better)
Translates to: LNIPYQAQKRKEVLEQGTWVSVF*SFRIQG
Trigger: GCCTTGGATCCTGAAGCTCAAGAAGACCGAGACCCA...AGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp CCTATGAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCGAAGCCTTCTTGCCCTaGATTTTCTTGTGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: PMKKGSQNPVCSHSIFPTEAFLP*IFLCGL
Trigger: GAGGCCACACAAGAAAATCAAGGGCAAGAAGGCTTC...GGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTCATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp AAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATCCTTGGGATTTCAGGAGGCAAAGATTCTGTaGATCTGCCTGTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: KNAKKYWNKGLSSSLGFQEAKIL*ICLWLE
Trigger: CTCCAGCCACAGGCAGATCAACAGAATCTTTGCCTC...CTGAAATCCCAAGGATGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTCAGCCCTTTTGCTTGTaGGGTACCTGGCCCAGAACA +
Preference number: 5 (lower is better)
Translates to: LNIPYQAQKRKEVLEQGTQPFCL*GTWPRT
Trigger: TGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTG...AGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp AAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACAAAACTCCCATCCCCTCCTTaGGTTTCTTCTCCCGGAAAA +
Preference number: 5 (lower is better)
Translates to: KVPRIQCAVTQYSLPSTKLPSPP*VSSPGK
Trigger: TTTTCCGGGAGAAGAAACCAAAGGAGGGGATGGGAG...TTTTGTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGTCCCGGAAACTGCTGTaGCTATTCATTAGACTTTGG +
Preference number: 5 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRSRKLL*LFIRLW
Trigger: CCAAAGTCTAATGAATAGCAACAGCAGTTTCCGGGA...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAGAGACGTGTGATGCGTaGGAAGGGCAGTATCAGAAA +
Preference number: 5 (lower is better)
Translates to: EERFPESSVQSLNIPYQAETCDA*EGQYQK
Trigger: TTTCTGATACTGCCCTTCCAACGCATCACACGTCTC...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAGCGAAGCTTTTCACTTaGAGTCTCAGTGCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: EERFPESSVQSLNIPYQAAKLFT*SLSAEE
Trigger: CTCTTCCGCACTGAGACTCAAAGTGAAAAGCTTCGC...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp TTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGCTCATGTCCCTTAACACTTTaGACTGGTTCATCACGGGTC +
Preference number: 5 (lower is better)
Translates to: FPTKHKNAKKYWNKGLSSCPLTL*TGSSRV
Trigger: GACCCGTGATGAACCAGTCAAAAGTGTTAAGGGACA...TGAGCTCAGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GACTGCAGGGGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTTGGGGGTAATGGTTaGTTGTATCTCAGTCTGGAA +
Preference number: 5 (lower is better)
Translates to: DCRGTCNEDNLRLKAILEVGGNG*LYLSLE
Trigger: TTCCAGACTGAGATACAACAAACCATTACCCCCAAC...CTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCCCCTGCAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAACCTCCCTGGATACTCTaGCTTCTCCCCCTGGACTTT +
Preference number: 5 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQPPWIL*LLPLDF
Trigger: AAAGTCCAGGGGGAGAAGCAAGAGTATCCAGGGAGG...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp TTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCTAGGCTCAAACTTGGCCTCTaGCAGTTTTTGATCTTCATG +
Preference number: 5 (lower is better)
Translates to: FQKARFLIPRKLLQQVSRLKLGL*QFLIFM
Trigger: CATGAAGATCAAAAACTGCAAGAGGCCAAGTTTGAG...CCTAGAAACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp GAAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCAACTCTGTTGTCTAGTTaGCTGGGTATGTCTAGCCAT +
Preference number: 5 (lower is better)
Translates to: EERFPESSVQSLNIPYQATLLSS*LGMSSH
Trigger: ATGGCTAGACATACCCAGCAAACTAGACAACAGAGT...TGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp TTGGGATTTCAGAAGGCCAGGTTCCTGATCCCTAGAAAGCTTCTGCAGCAGGTTTCCTCTTCTTTCTCTTaGCTAACTGCCAAAGTCAAA +
Preference number: 5 (lower is better)
Translates to: LGFQKARFLIPRKLLQQVSSSFS*LTAKVK
Trigger: TTTGACTTTGGCAGTTAGCAAAGAGAAAGAAGAGGA...AACCTGCTGCAGAAGCTTTCTAGGGATCAGGAACCTGGCCTTCTGAAATCCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp GGCACATGCAATGAGGACAATCTCCGATTGAAAGCTATTCTAGAGGTCAGCAGGGAGGCCTATACATCCTaGAGATATAAGAGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: GTCNEDNLRLKAILEVSREAYTS*RYKRKR
Trigger: TCTCTTCCTCTTATATCTCAAGGATGTATAGGCCTC...CCTGCTGACCTCTAGAATAGCTTTCAATCGGAGATTGTCCTCATTGCATGTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 90 bp TTTCTTGATCCTAAAGCTGACCTCCTTGTATTATTAAATTCCTCCTaGGGGGCAGATCGTCTAAATGATCCTCTCACTGGTGGCTCAGAC +
Preference number: 5 (lower is better)
Translates to: FLDPKADLLVLLNSS*GADRLNDPLTGGSD
Trigger: GTCTGAGCCACCAGTGAGAGGATCATTTAGACGATCTGCCCCTCAGGAGGAATTTAATAATACAAGGAGGTCAGCTTTAGGATCAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS-3UTR CAA 90 bp AAGAAAGGTTCCCAGAATCCAGTGTGCAGTCACTCAATATTCCCTACCAAGCACTTGAAGGAAGCCTTCTaGCCCTTGATTTTCTTGTGT +
Preference number: 5 (lower is better)
Translates to: KKGSQNPVCSHSIFPTKHLKEAF*PLIFLC
Trigger: ACACAAGAAAATCAAGGGCAAGAAGGCTTCCTTCAA...GTGCTTGGTAGGGAATATTGAGTGACTGCACACTGGATTCTGGGAACCTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp CAGTCACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGAGACGTGTGATGCGTaGGAAGGGCAGTATCAGAAA +
Preference number: 5 (lower is better)
Translates to: QSLNIPYQAQKRKEVLEQETCDA*EGQYQK
Trigger: TTTCTGATACTGCCCTTCCAACGCATCACACGTCTC...TTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTGACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 90 bp TCTTTCTCTTTGCTAACTGCCAAAGTCAAAGACATAAGTTCTGACTaGAATTCTGCCCCCACTCTGTTGTCTAGTTTGCTGGGTATGTCT +
Preference number: 5 (lower is better)
Translates to: SFSLLTAKVKDISSD*NSAPTLLSSLLGMS
Trigger: AGACATACCCAGCAAACTAGACAACAGAGTGGGGGCAGAATTGCAGTCAGAACTTATGTCTTTGACTTTGGCAGTTAGCAAAGAGAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp CACTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGATTCTTCTGTTTCTTCTaGGGGTCAGAGAGCCATAGA +
Preference number: 5 (lower is better)
Translates to: HSIFPTKHKNAKKYWNKGFFCFF*GSESHR
Trigger: TCTATGGCTCTCTGACCCCAAGAAGAAACAGAAGAA...TCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS-3UTR CAA 90 bp CTCAATATTCCCTACCAAGCACAAAAACGCAAAGAAGTACTGGAACAAGGGACTGAGGCCTATACATCCTaGAGATATAAGAGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: LNIPYQAQKRKEVLEQGTEAYTS*RYKRKR
Trigger: TCTCTTCCTCTTATATCTCAAGGATGTATAGGCCTC...AGTCCCTTGTTCCAGTACTTCTTTGCGTTTTTGTGCTTGGTAGGGAATATTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 72 bp CCACTGGAAGAGAAGGCTTGCTGTCCTCTCCTGGTCTaGTCCCTTCCACTGCTGTCTGCCCACCACTATCCC +
Preference number: 6 (lower is better)
Translates to: PLEEKACCPLLV*SLPLLSAHHYP
Trigger: GGGATAGTGGTGGGCAGACAGCAGTGGAAGGGAGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp GGAAGCCACTGGAAGAGAAGGCTTGCTGTCCTCTCCTaGTCTGCTCCCTTCCACTGCTGTCTGCCCACCACT +
Preference number: 6 (lower is better)
Translates to: GSHWKRRLAVLS*SAPFHCCLPTT
Trigger: AGTGGTGGGCAGACAGCAGTGGAAGGGAGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp GGCAGGGGGAGAAATGGGTTGGTGAGACCATTCTGTTaGCTCCAGTGCAGGAGCTTGAGGGCTCAGTTCCTC +
Preference number: 6 (lower is better)
Translates to: GRGRNGLVRPFC*LQCRSLRAQFL
Trigger: GAGGAACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAACCCATTTCTCCCCCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 90 bp GAGGGTTGGCTGTGTCAGAGGTGGCACATGGGTACCTGGAGGATTTaGCGGGTAGTGGAGGAGTCTCACATGGCCCACAATGATGTGGAG +
Preference number: 6 (lower is better)
Translates to: EGWLCQRWHMGTWRI*RVVEESHMAHNDVE
Trigger: CTCCACATCATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAAAATCCTCCAGGTACCCATGTGCCACCTCTGACACAGCCAACCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp TTTGCGGGTAGTGGAGGAGTCTCACATGGCCCACAATaGTGTGGAGTGTCAGCTGAGGCAGAGGCTGTTGGG +
Preference number: 6 (lower is better)
Translates to: FAGSGGVSHGPQ*CGVSAEAEAVG
Trigger: CCCAACAGCCTCTGCCTCAGCTGACACTCCACATCATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp TCCACTGCTGTCTGCCCACCACTATCCCCATTCCCTTaGACCCTGTCACCTGAGTCTACAACCTCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: STAVCPPLSPFP*TLSPESTTSFW
Trigger: CCAGAAGGAGGTTGTAGACTCAGGTGACAGGGTCCAAGGGAATGGGGATAGTGGTGGGCAGACAGCAGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp ACCTGGGGAGAGAACCTCAGGATCTACGGAAGCCACTaGAAGAGAAGGCTTGCTGTCCTCTCCTGGTCTGCT +
Preference number: 6 (lower is better)
Translates to: TWGENLRIYGSH*KRRLAVLSWSA
Trigger: AGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTTCCGTAGATCCTGAGGTTCTCTCCCCAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp GAGGGTTGGCTGTGTCAGAGGTGGCACATGGGTACCTaGAGGATTTTGCGGGTAGTGGAGGAGTCTCACATG +
Preference number: 6 (lower is better)
Translates to: EGWLCQRWHMGT*RILRVVEESHM
Trigger: CATGTGAGACTCCTCCACTACCCGCAAAATCCTCCAGGTACCCATGTGCCACCTCTGACACAGCCAACCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp AGGCAGGGGGAGAAATGGGTTGGTGAGACCATTCTGTaGGCTCCAGTGCAGGAGCTTGAGGGCTCAGTTCCT +
Preference number: 6 (lower is better)
Translates to: RQGEKWVGETIL*APVQELEGSVP
Trigger: AGGAACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAACCCATTTCTCCCCCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp GGTCTACGAAGGCCTTGCCGGTTCCAGCCCTTTTGCTaGTTGGGTACCTGGCCCAGAACAACCTGTTCACTG +
Preference number: 6 (lower is better)
Translates to: GLRRPCRFQPFC*LGTWPRTTCSL
Trigger: CAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 72 bp AGTCTCACATGGCCCACAATGATGTGGAGTGTCAGCTaGGGCAGAGGCTGTTGGGGTCTCCTCAGGAAGGAT +
Preference number: 6 (lower is better)
Translates to: SLTWPTMMWSVS*GRGCWGLLRKD
Trigger: ATCCTTCCTGAGGAGACCCCAACAGCCTCTGCCTCAGCTGACACTCCACATCATTGTGGGCCATGTGAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp AGTCTTACACCCTCCAGCCAGCCATCACTGCTTTGCTaGGTGACCATCACCACATCCGCCTTCTCTAGTGCC +
Preference number: 6 (lower is better)
Translates to: SLTPSSQPSLLC*VTITTSAFSSA
Trigger: GGCACTAGAGAAGGCGGATGTGGTGATGGTCACTCAGCAAAGCAGTGATGGCTGGCTGGAGGGTGTAAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 72 bp GAAGGTCTACGAAGGCCTTGCCGGTTCCAGCCCTTTTaGTTGTTGGGTACCTGGCCCAGAACAACCTGTTCA +
Preference number: 6 (lower is better)
Translates to: EGLRRPCRFQPF*LLGTWPRTTCS
Trigger: TGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTAGACCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 72 bp CAGTGGGTGGTGAAGAAACATTTGCAGGAGAGCCTATaGCAAAGGCTGAGTTCTGTGGGGAGCCCCATGTCG +
Preference number: 6 (lower is better)
Translates to: QWVVKKHLQESL*QRLSSVGSPMS
Trigger: CGACATGGGGCTCCCCACAGAACTCAGCCTTTGCCATAGGCTCTCCTGCAAATGTTTCTTCACCACCCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp TACGAAGGCCTTGCCGGTTCCAGCCCTTTTGCTTGTTaGGTACCTGGCCCAGAACAACCTGTTCACTGCTAC +
Preference number: 6 (lower is better)
Translates to: YEGLAGSSPFAC*VPGPEQPVHCY
Trigger: GTAGCAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 72 bp CTCTCGAGGCTTGTAGGCACGGAGGCACTGAACTTGTaGGGAGTCATAACACTCAAGGAGGTCCAACTCCTC +
Preference number: 6 (lower is better)
Translates to: LSRLVGTEALNL*GVITLKEVQLL
Trigger: GAGGAGTTGGACCTCCTTGAGTGTTATGACTCCCCACAAGTTCAGTGCCTCCGTGCCTACAAGCCTCGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CAA 72 bp TTGGTGAGACCATTCTGTTGGCTCCAGTGCAGGAGCTaGAGGGCTCAGTTCCTCACACACAGGCTCCTTCTG +
Preference number: 6 (lower is better)
Translates to: LVRPFCWLQCRS*RAQFLTHRLLL
Trigger: CAGAAGGAGCCTGTGTGTGAGGAACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp CTACGAAGGCCTTGCCGGTTCCAGCCCTTTTGCTTGTaGGGTACCTGGCCCAGAACAACCTGTTCACTGCTA +
Preference number: 6 (lower is better)
Translates to: LRRPCRFQPFCL*GTWPRTTCSLL
Trigger: TAGCAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGGCCTTCGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 72 bp TCCTCTCACTGGTGGCTCAGACTCTTCAGTGAGCCCTaGCTCATCCTTAGTGGTAGGTCTCTGAAGGTCTGG +
Preference number: 6 (lower is better)
Translates to: SSHWWLRLFSEP*LILSGRSLKVW
Trigger: CCAGACCTTCAGAGACCTACCACTAAGGATGAGTCAGGGCTCACTGAAGAGTCTGAGCCACCAGTGAGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 72 bp GGCTTCCTTGAGGTTCTGAGCACGGACCTCTGGGTTTaGAATGAACTCTACCTGCTGGACAGGAAACCAGCC +
Preference number: 6 (lower is better)
Translates to: GFLEVLSTDLWV*NELYLLDRKPA
Trigger: GGCTGGTTTCCTGTCCAGCAGGTAGAGTTCATTTCAAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CAA 90 bp AGAAATGGGTTGGTGAGACCATTCTGTTGGCTCCAGTGCAGGAGCTaGAGGGCTCAGTTCCTCACACACAGGCTCCTTCTGAATCTGTGG +
Preference number: 6 (lower is better)
Translates to: RNGLVRPFCWLQCRS*RAQFLTHRLLLNLW
Trigger: CCACAGATTCAGAAGGAGCCTGTGTGTGAGGAACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAACCCATTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp TTGGCCGTCTTGACTCGATGGGCTTCCTTGAGGTTCTaGGCACGGACCTCTGGGTTTGAAATGAACTCTACC +
Preference number: 6 (lower is better)
Translates to: LAVLTRWASLRF*ARTSGFEMNST
Trigger: GGTAGAGTTCATTTCAAACCCAGAGGTCCGTGCTCAGAACCTCAAGGAAGCCCATCGAGTCAAGACGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 72 bp CCTTGCCGGTTCCAGCCCTTTTGCTTGTTGGGTACCTaGCCCAGAACAACCTGTTCACTGCTACTTTCTGAT +
Preference number: 6 (lower is better)
Translates to: PCRFQPFCLLGT*PRTTCSLLLSD
Trigger: ATCAGAAAGTAGCAGTGAACAGGTTGTTCTGGGCCAGGTACCCAACAAGCAAAAGGGCTGGAACCGGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CAA 90 bp CTGGGCTTCCTGAGATTGAAGGAAGCCTTCTTGCCCTTGATTTTCTaGTGTGGCCTCCAACTGCAGCTGTTTCCCCTGCCTAAGCAGTTC +
Preference number: 6 (lower is better)
Translates to: LGFLRLKEAFLPLIF*CGLQLQLFPLPKQF
Trigger: GAACTGCTTAGGCAGGGGAAACAGCTGCAGTTGGAGGCCACACAAGAAAATCAAGGGCAAGAAGGCTTCCTTCAATCTCAGGAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 90 bp ATCAAGAGATTCTTCAGGAGCAAAAGAGGCAGGGGGAGAAATGGGTaGGTGAGACCATTCTGTTGGCTCCAGTGCAGGAGCTTGAGGGCT +
Preference number: 6 (lower is better)
Translates to: IKRFFRSKRGRGRNG*VRPFCWLQCRSLRA
Trigger: AGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAACCCATTTCTCCCCCTGCCTCTTTTGCTCCTGAAGAATCTCTTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 72 bp CTGACTGCAATTCTGCCCCCACTCTGTTGTCTAGTTTaGTGGGTATGTCTAGCCATTCTTCCTGGACAGCAC +
Preference number: 6 (lower is better)
Translates to: LTAILPPLCCLV*WVCLAILPGQH
Trigger: GTGCTGTCCAGGAAGAATGGCTAGACATACCCAGCAAACTAGACAACAGAGTGGGGGCAGAATTGCAGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 72 bp CCTCCTCCTGCTCTCCCAGGAGCCCACCAAAACAAATaGCTTCGTTCAGAGTTCCTTCCTCCTGAATTTCTA +
Preference number: 6 (lower is better)
Translates to: PPPALPGAHQNK*LRSEFLPPEFL
Trigger: TAGAAATTCAGGAGGAAGGAACTCTGAACGAAGGCATTTGTTTTGGTGGGCTCCTGGGAGAGCAGGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp CTCCTTTGGTTTCTTCTCCCGGAAAACAACAGAATCTaGAGAGCCAGGAAGTCTTCCCGCAGCTGGATTTCG +
Preference number: 6 (lower is better)
Translates to: LLWFLLPENNRI*RARKSSRSWIS
Trigger: CGAAATCCAGCTGCGGGAAGACTTCCTGGCTCTTCAGATTCTGTTGTTTTCCGGGAGAAGAAACCAAAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 72 bp TTGTCTAGTTTGCTGGGTATGTCTAGCCATTCTTCCTaGACAGCACATGCCAAGAGCTCAGGGGCAGCTATT +
Preference number: 6 (lower is better)
Translates to: LSSLLGMSSHSS*TAHAKSSGAAI
Trigger: AATAGCTGCCCCTGAGCTCTTGGCATGTGCTGTCCAGGAAGAATGGCTAGACATACCCAGCAAACTAGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp ACTGCAATTCTGCCCCCACTCTGTTGTCTAGTTTGCTaGGTATGTCTAGCCATTCTTCCTGGACAGCACATG +
Preference number: 6 (lower is better)
Translates to: TAILPPLCCLVC*VCLAILPGQHM
Trigger: CATGTGCTGTCCAGGAAGAATGGCTAGACATACCCAGCAAACTAGACAACAGAGTGGGGGCAGAATTGCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp CTGGGCTTCCTGAGATTGAAGGAAGCCTTCTTGCCCTaGATTTTCTTGTGTGGCCTCCAACTGCAGCTGTTT +
Preference number: 6 (lower is better)
Translates to: LGFLRLKEAFLP*IFLCGLQLQLF
Trigger: AAACAGCTGCAGTTGGAGGCCACACAAGAAAATCAAGGGCAAGAAGGCTTCCTTCAATCTCAGGAAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp AGCACATGCCAAGAGCTCAGGGGCAGCTATTGTTCTTaGCAGTCTGTCTTTAAGGCTCTGGATTACAGCTTC +
Preference number: 6 (lower is better)
Translates to: STCQELRGSYCS*QSVFKALDYSF
Trigger: GAAGCTGTAATCCAGAGCCTTAAAGACAGACTGTCAAGAACAATAGCTGCCCCTGAGCTCTTGGCATGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp GGTGTATGGTCACCCATGTCCCTTAACACTTTTGACTaGTTCATCACGGGTCTGTGTCCATCTGTCCACTTA +
Preference number: 6 (lower is better)
Translates to: GVWSPMSLNTFD*FITGLCPSVHL
Trigger: TAAGTGGACAGATGGACACAGACCCGTGATGAACCAGTCAAAAGTGTTAAGGGACATGGGTGACCATACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp GCTCAGTTCCTCACACACAGGCTCCTTCTGAATCTGTaGAATATCAGCCACAGAGGAAGAAATACCTGGGAA +
Preference number: 6 (lower is better)
Translates to: AQFLTHRLLLNL*NISHRGRNTWE
Trigger: TTCCCAGGTATTTCTTCCTCTGTGGCTGATATTCCACAGATTCAGAAGGAGCCTGTGTGTGAGGAACTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp CTGGATTTCGTAAATCTGAAGAGCTTTCAGGCAAAATaGAAGGTCTACGAAGGCCTTGCCGGTTCCAGCCCT +
Preference number: 6 (lower is better)
Translates to: LDFVNLKSFQAK*KVYEGLAGSSP
Trigger: AGGGCTGGAACCGGCAAGGCCTTCGTAGACCTTCAATTTTGCCTGAAAGCTCTTCAGATTTACGAAATCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CCA 72 bp GCAGCTATTGTTCTTGACAGTCTGTCTTTAAGGCTCTaGATTACAGCTTCCTGCTGGTCTGGAGTGTTACAG +
Preference number: 6 (lower is better)
Translates to: AAIVLDSLSLRL*ITASCWSGVLQ
Trigger: CTGTAACACTCCAGACCAGCAGGAAGCTGTAATCCAGAGCCTTAAAGACAGACTGTCAAGAACAATAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CCA 72 bp AAAGACGATACCATCCCTACTTCTTCTGTTTCTTCTTaGGGTCAGAGAGCCATAGATGGCTGGTTTAGGAGG +
Preference number: 6 (lower is better)
Translates to: KDDTIPTSSVSS*GQRAIDGWFRR
Trigger: CCTCCTAAACCAGCCATCTATGGCTCTCTGACCCCAAGAAGAAACAGAAGAAGTAGGGATGGTATCGTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp AACTCAGGCATATCAGGAGTTGGGGGTAATGGTTTGTaGTATCTCAGTCTGGAAGGGATGGAGGTCTGTGTA +
Preference number: 6 (lower is better)
Translates to: NSGISGVGGNGL*YLSLEGMEVCV
Trigger: TACACAGACCTCCATCCCTTCCAGACTGAGATACAACAAACCATTACCCCCAACTCCTGATATGCCTGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS CAA 90 bp AAAGTCAAAGACATAAGTTCTGACTGCAATTCTGCCCCCACTCTGTaGTCTAGTTTGCTGGGTATGTCTAGCCATTCTTCCTGGACAGCA +
Preference number: 6 (lower is better)
Translates to: KVKDISSDCNSAPTL*SSLLGMSSHSSWTA
Trigger: TGCTGTCCAGGAAGAATGGCTAGACATACCCAGCAAACTAGACAACAGAGTGGGGGCAGAATTGCAGTCAGAACTTATGTCTTTGACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp ATTATTAAATTCCTCCTGAGGGGCAGATCGTCTAAATaGTCCTCTCACTGGTGGCTCAGACTCTTCAGTGAG +
Preference number: 6 (lower is better)
Translates to: IIKFLLRGRSSK*SSHWWLRLFSE
Trigger: CTCACTGAAGAGTCTGAGCCACCAGTGAGAGGATCATTTAGACGATCTGCCCCTCAGGAGGAATTTAATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 72 bp GTCTTGATTATTAGGTCTTGGCTTGGCTTGACCTCCTaGATGTATAACTCCTCCCTGGATACTCTTGCTTCT +
Preference number: 6 (lower is better)
Translates to: VLIIRSWLGLTS*MYNSSLDTLAS
Trigger: AGAAGCAAGAGTATCCAGGGAGGAGTTATACATTCAGGAGGTCAAGCCAAGCCAAGACCTAATAATCAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS TCA 72 bp CCTAAAGCTGACCTCCTTGTATTATTAAATTCCTCCTaGGGGGCAGATCGTCTAAATGATCCTCTCACTGGT +
Preference number: 6 (lower is better)
Translates to: PKADLLVLLNSS*GADRLNDPLTG
Trigger: ACCAGTGAGAGGATCATTTAGACGATCTGCCCCTCAGGAGGAATTTAATAATACAAGGAGGTCAGCTTTAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031750.14
ENSMUST00000182924.2
CDS GCA 72 bp TTGCTAACTGCCAAAGTCAAAGACATAAGTTCTGACTaGAATTCTGCCCCCACTCTGTTGTCTAGTTTGCTG +
Preference number: 6 (lower is better)
Translates to: LLTAKVKDISSD*NSAPTLLSSLL
Trigger: CAGCAAACTAGACAACAGAGTGGGGGCAGAATTGCAGTCAGAACTTATGTCTTTGACTTTGGCAGTTAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp CTCCTTCTGGTCCCTTACGGGCATCACTTTTCCTGTTaGATCATGATCTCTCTGCTTTCTCTTTACAATCTC +
Preference number: 6 (lower is better)
Translates to: LLLVPYGHHFSC*IMISLLSLYNL
Trigger: GAGATTGTAAAGAGAAAGCAGAGAGATCATGATCAAACAGGAAAAGTGATGCCCGTAAGGGACCAGAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 90 bp CTAGGGATTGAGGTGTCTGGGGAGGTTTCTTCCTCTTCTTTCTCTTaGCTAACTGCCAAAGTCAAAGACATAAGTTCTGACTGCAATTCT +
Preference number: 6 (lower is better)
Translates to: LGIEVSGEVSSSSFS*LTAKVKDISSDCNS
Trigger: AGAATTGCAGTCAGAACTTATGTCTTTGACTTTGGCAGTTAGCAAAGAGAAAGAAGAGGAAGAAACCTCCCCAGACACCTCAATCCCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS TCA 72 bp GTCCTGTTTCAAAGCAAACAAAGCAGTAGAGGAGTCTaGAAAGACGATACCATCCCTACTTCTTCTGTTTCT +
Preference number: 6 (lower is better)
Translates to: VLFQSKQSSRGV*KDDTIPTSSVS
Trigger: AGAAACAGAAGAAGTAGGGATGGTATCGTCTTTTCAGACTCCTCTACTGCTTTGTTTGCTTTGAAACAGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS GCA 72 bp TGTCTCCATATCCGAAGATTCTTTCTTGAAGAAAATTaGCATACTATTAGGTGTATGGTCACCCATGTCCCT +
Preference number: 6 (lower is better)
Translates to: CLHIRRFFLEEN*HTIRCMVTHVP
Trigger: AGGGACATGGGTGACCATACACCTAATAGTATGGCAATTTTCTTCAAGAAAGAATCTTCGGATATGGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14
CDS CAA 72 bp ATTTCCTGGCTTGTCTCCATATCCGAAGATTCTTTCTaGAAGAAAATTGCCATACTATTAGGTGTATGGTCA +
Preference number: 6 (lower is better)
Translates to: ISWLVSISEDSF*KKIAILLGVWS
Trigger: TGACCATACACCTAATAGTATGGCAATTTTCTTCAAGAAAGAATCTTCGGATATGGAGACAAGCCAGGAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031750.14