Pregenerated sensors for ARHGEF39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051517Ensembl transcript IDs: ENSMUST00000054538.13, ENSMUST00000136005.3, ENSMUST00000152134.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCAGGTGTGGCAGCACACACCTATAACCCAACACCTGAGAGACTaGGGCAGAAGGAATTCAAATTCATGGTCAGCCTGGGTAAGATCC | + |
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Preference number: 1 (lower is better) Translates to: SQVWQHTPITQHLRD*GRRNSNSWSAWVRS Trigger: GGATCTTACCCAGGCTGACCATGAATTTGAATTCCTTCTGCCTCAGTCTCTCAGGTGTTGGGTTATAGGTGTGTGCTGCCACACCTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR CCA 90 bp | ACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTaGCTCTGCCCTATTCCTGAGTATCCGAGTTCTGGAATTTGTAAG | + |
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Preference number: 1 (lower is better) Translates to: TCSTEAQSKYIPFCS*LCPIPEYPSSGICK Trigger: CTTACAAATTCCAGAACTCGGATACTCAGGAATAGGGCAGAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR GCA 90 bp | TCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCTaGCCTATTCCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTT | + |
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Preference number: 1 (lower is better) Translates to: STEAQSKYIPFCSWL*PIPEYPSSGICKIL Trigger: AAGAATCTTACAAATTCCAGAACTCGGATACTCAGGAATAGGGCAGAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR CAA 90 bp | TCAGGAGGATCTGGAGTTCAAGGCCACCCTGGACTGCATGAAACCTaGTCTCAAGAAAACAAACTATATACAATAGCCAGGTGTGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: SGGSGVQGHPGLHET*SQENKLYTIARCGS Trigger: GCTGCCACACCTGGCTATTGTATATAGTTTGTTTTCTTGAGACAAGGTTTCATGCAGTCCAGGGTGGCCTTGAACTCCAGATCCTCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGGCCACCCTGGACTGCATGAAACCTTGTCTCAAGAAAACAAACTATATAAATGGGATTAACCGCTaGCCACAGACAGCAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: FKATLDCMKPCLKKTNYINGINR*PQTAGA Trigger: AGCCCCTGCTGTCTGTGGCCAGCGGTTAATCCCATT...TATATAGTTTGTTTTCTTGAGACAAGGTTTCATGCAGTCCAGGGTGGCCTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR GCA 72 bp | CTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTaGCATGTGTATCCCAGGATAGCTGTGAATATGGCC | + |
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Preference number: 3 (lower is better) Translates to: LEFVRFFIGTPS*HVYPRIAVNMA Trigger: GGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR GCA 72 bp | GCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCTaGCCTATTCCTGAGTATCCGAGTTCTGGAATTTGT | + |
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Preference number: 3 (lower is better) Translates to: AQSKYIPFCSWL*PIPEYPSSGIC Trigger: ACAAATTCCAGAACTCGGATACTCAGGAATAGGGCAGAGCCACGAACAAAAGGGAATGTACTTCGATTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| 3UTR GCA 72 bp | GTTCAGGAGGATCTGGAGTTCAAGGCCACCCTGGACTaGATGAAACCTTGTCTCAAGAAAACAAACTATATA | + |
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Preference number: 3 (lower is better) Translates to: VQEDLEFKATLD*MKPCLKKTNYI Trigger: TATATAGTTTGTTTTCTTGAGACAAGGTTTCATGCAGTCCAGGGTGGCCTTGAACTCCAGATCCTCCTGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | AGTGGCAGGGCGTTAAAGGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCGGCGAGCAGCCCGTGTaGGCTGCTGGTAGTCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SGRALKGLVPLRLNRSTFGEQPV*AAGSQG Trigger: GCCCTGACTACCAGCAGCTCACACGGGCTGCTCGCC...GAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCCTTTAACGCCCTGCCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR GCA 90 bp | ATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGCCCCATACTGTTGGAGCCGCTaGAGAGGCAGAGGGAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: IGTPSCHVYPRIAVNMAPYCWSR*RGRGSR Trigger: CCTGCTCCCTCTGCCTCTGCAGCGGCTCCAACAGTA...TGGGGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR TCA 90 bp | ACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGCCCCAGCATGTTTGCTGTGGTGCCACTGTaGCAGCTCCTCCTGGTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TQLPCVSQDSCEYGPSMFAVVPL*QLLLVS Trigger: ACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGC...AAACATGCTGGGGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | GAGGATCTGGAGTTCAAGGCCACCCTGGACTGCATGAAACCTTGTCTCAAGAAATTGCCTTGCGCCCACTaGGTAGAGCCTGGACACGCA | + |
|
Preference number: 4 (lower is better) Translates to: EDLEFKATLDCMKPCLKKLPCAH*VEPGHA Trigger: TGCGTGTCCAGGCTCTACTCAGTGGGCGCAAGGCAA...TTTCTTGAGACAAGGTTTCATGCAGTCCAGGGTGGCCTTGAACTCCAGATCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | CTCCTTTTCAAAGCTGCAAATGGGATTAACCGCTGGCCACAGACAGCAGGGGCTCAAGGTCCTCCCGAATaGCCAAAGACCCTGCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLFKAANGINRWPQTAGAQGPPE*PKTLLR Trigger: CCTTAGCAGGGTCTTTGGCCATTCGGGAGGACCTTG...AGCCCCTGCTGTCTGTGGCCAGCGGTTAATCCCATTTGCAGCTTTGAAAAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | CCTGAGAGACTGAGGCAGAAGGAATTCAAATTCATGGTCAGCCTGGGTAAGATCGCCGAGGCTTGGCCATaGGGAGCACGTCGGAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: PERLRQKEFKFMVSLGKIAEAWP*GARRRK Trigger: TTTTCTCCGACGTGCTCCTCATGGCCAAGCCTCGGC...GATCTTACCCAGGCTGACCATGAATTTGAATTCCTTCTGCCTCAGTCTCTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR GCA 90 bp | GAGGATCTGGAGTTCAAGGCCACCCTGGACTGCATGAAACCTTGTCTCAAGAAAACTAAAAGCCAGCCCTaGCGTAGGAACCAGCGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: EDLEFKATLDCMKPCLKKTKSQP*RRNQRP Trigger: AGGCCGCTGGTTCCTACGGCAGGGCTGGCTTTTAGT...TTTCTTGAGACAAGGTTTCATGCAGTCCAGGGTGGCCTTGAACTCCAGATCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR GCA 90 bp | CAAAATGGACTCCTTTTCAAAGCTGCAAATGGGATTAACCGCTGGCCACAGACACCACTCTTCAGCAGGTaGAGTGGGGGCCGAGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: QNGLLFKAANGINRWPQTPLFSR*SGGRGL Trigger: CAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGG...TGTCTGTGGCCAGCGGTTAATCCCATTTGCAGCTTTGAAAAGGAGTCCATTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | GGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCAGAGTCAGGCTGTGGTaGCACTGTGACAGCTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GTCSTEAQSKYIPFCSWLRVRLW*HCDSSS Trigger: GGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCT...GAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | CCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGGCCGAGGCTCCCCAGTaGGAGGCACCACTAAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: PEYPSSGICKILHRHTQLAEAPQ*EAPLKA Trigger: GGCTTTTAGTGGTGCCTCCCACTGGGGAGCCTCGGC...CAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | CCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGCTTCAGCAGGTGCAGTaGGGGCCGAGGCTTGGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PEYPSSGICKILHRHTQLLQQVQ*GPRLGH Trigger: ATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAG...CAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | ACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGCCCCAGCATGTTTAAGACCCTGCTAAGGTaGCACTGGGACATAGGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: TQLPCVSQDSCEYGPSMFKTLLR*HWDIGY Trigger: GTACCCTATGTCCCAGTGTCACCTTAGCAGGGTCTT...AAACATGCTGGGGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | TATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGCCATGTCCACTCTTCAGCAGGTaGAGTGGGGGCCGAGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: YPSSGICKILHRHTQLPCPLFSR*SGGRGL Trigger: CAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGG...ACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | ATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGCCCCAGTCGTAGTGTTCCTTTaGCTTTCAGGATCCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IGTPSCHVYPRIAVNMAPVVVFL*LSGSAG Trigger: TCCTGCGGATCCTGAAAGCCAAAGGAACACTACGAC...TGGGGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | ATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGCCCCAGAGATCTCTCTGCGTTaGCAGCAAATTGGGCGTAGA | + |
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Preference number: 4 (lower is better) Translates to: IGTPSCHVYPRIAVNMAPEISLR*QQIGRR Trigger: TCTACGCCCAATTTGCTGCCAACGCAGAGAGATCTC...TGGGGCCATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR TCA 90 bp | AACAAAATGGACTCCTTTTCAAAGCTGCAAATGGGATTAACCGCTGGCCACAGAGCTGTGGTGCCACTGTaGCAGCTCCTCCTGGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: NKMDSFSKLQMGLTAGHRAVVPL*QLLLVS Trigger: ACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGC...TCTGTGGCCAGCGGTTAATCCCATTTGCAGCTTTGAAAAGGAGTCCATTTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | GGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCCTCTGCAGACAAAGGTaGCACTCTTCAGCAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GTCSTEAQSKYIPFCSWLLCRQR*HSSAGA Trigger: TGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAG...GAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | AGTGGCAGGGCGTTAAAGGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCTCTGCAGACAAAGGTaGCACTCTTCAGCAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: SGRALKGLVPLRLNRSTFLCRQR*HSSAGA Trigger: TGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAG...GAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCCTTTAACGCCCTGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | GGCGTTAAAGGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTAGAGTCAGGCTGTGGTaGCACTGTGACAGCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GVKGTCSTEAQSKYIPFCRVRLW*HCDSSS Trigger: GGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCT...ACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCCTTTAACGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | AGTGGCAGGGCGTTAAAGGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCGTCCCAAACAGGGTCTaGAGTTCTGGTGGTCGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SGRALKGLVPLRLNRSTFVPNRV*SSGGRS Trigger: ACTACGACCACCAGAACTCCAGACCCTGTTTGGGAC...GAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCCTTTAACGCCCTGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | TGTAAGATTCTTCATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTCAAGGTCCTCCCGAATaGCCAAAGACCCTGCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: CKILHRHTQLPCVSQDSCQGPPE*PKTLLR Trigger: CCTTAGCAGGGTCTTTGGCCATTCGGGAGGACCTTG...ACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | TGTAAGATTCTTCATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTAAGACCCTGCTAAGGTaGCACTGGGACATAGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CKILHRHTQLPCVSQDSCKTLLR*HWDIGY Trigger: GTACCCTATGTCCCAGTGTCACCTTAGCAGGGTCTT...ACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | CAAAATGGACTCCTTTTCAAAGCTGCAAATGGGATTAACCGCTGGCCACAGACAGGGGAAAGGACAGACTaGGCAAACCACCACAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: QNGLLFKAANGINRWPQTGERTD*ANHHKV Trigger: GACCTTGTGGTGGTTTGCTCAGTCTGTCCTTTCCCC...TGTCTGTGGCCAGCGGTTAATCCCATTTGCAGCTTTGAAAAGGAGTCCATTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | GGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCTGTGACAGCTCCTCCTaGTCAGTAGACATAAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: GTCSTEAQSKYIPFCSWLCDSSS*SVDISS Trigger: ACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACA...GAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR GCA 90 bp | CCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGAGTCTGAGATCTCTCTaGGTTGGCAGCAAATTGGGC | + |
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Preference number: 4 (lower is better) Translates to: PEYPSSGICKILHRHTQLSLRSL*VGSKLG Trigger: GCCCAATTTGCTGCCAACGCAGAGAGATCTCAGACT...CAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | CCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGAGCAGTAGCTTCTCATaGGGAAAGGACAGACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PEYPSSGICKILHRHTQLSSSFS*GKDRLS Trigger: GCTCAGTCTGTCCTTTCCCCATGAGAAGCTACTGCT...CAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | CCTATTCCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCGGTAGTCAGGGCTGTTaGGAACTGTGTTCTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PIPEYPSSGICKILHRHTGSQGC*ELCSQP Trigger: TGGCTGAGAACACAGTTCCCAACAGCCCTGACTACC...GGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGGAATAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CCA 90 bp | ATAAATCAGGAAACCATAGGCAATAACAACAAAATGGACTCCTTTTCAAAGCTGCTTCAGCAGGTGCAGTaGGGGCCGAGGCTTGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: INQETIGNNNKMDSFSKLLQQVQ*GPRLGH Trigger: ATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAG...CAGCTTTGAAAAGGAGTCCATTTTGTTGTTATTGCCTATGGTTTCCTGATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | TATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGCCATGTAGCAGTAGCTTCTCATaGGGAAAGGACAGACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: YPSSGICKILHRHTQLPCSSSFS*GKDRLS Trigger: GCTCAGTCTGTCCTTTCCCCATGAGAAGCTACTGCT...ACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR CCA 90 bp | CCTATTCCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCTGTGACAGCTCCTCCTaGTCAGTAGACATAAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PIPEYPSSGICKILHRHTCDSSS*SVDISS Trigger: ACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACA...GGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGGAATAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS-3UTR TCA 90 bp | ATAAATCAGGAAACCATAGGCAATAACAACAAAATGGACTCCTTTTCAAAGCTGGGGGAAAGGACAGACTaGGCAAACCACCACAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: INQETIGNNNKMDSFSKLGERTD*ANHHKV Trigger: GACCTTGTGGTGGTTTGCTCAGTCTGTCCTTTCCCC...CAGCTTTGAAAAGGAGTCCATTTTGTTGTTATTGCCTATGGTTTCCTGATTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS GCA 90 bp | GTTGTTCCTGGTAGCGTCGCTCGGTCTCCAGCAGCTCCCGAGCGGTaGAGACACGTTTCCGTTCCCAACGAGCACGCTGCTGTAGCACCG | + |
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Preference number: 5 (lower is better) Translates to: VVPGSVARSPAAPER*RHVSVPNEHAAVAP Trigger: CGGTGCTACAGCAGCGTGCTCGTTGGGAACGGAAACGTGTCTGCACCGCTCGGGAGCTGCTGGAGACCGAGCGACGCTACCAGGAACAAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS TCA 90 bp | CGTGGACCTTCTGGGCCGTCTCACTTACCAGGCGAGCAGCCCGTGTaGGCTGCTGGTAGTCAGGGCTGTTGGGAACTGTGTTCTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: RGPSGPSHLPGEQPV*AAGSQGCWELCSQP Trigger: TGGCTGAGAACACAGTTCCCAACAGCCCTGACTACCAGCAGCTCACACGGGCTGCTCGCCTGGTAAGTGAGACGGCCCAGAAGGTCCACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 90 bp | CCTGGACACGCAGCAGATGCTGATCATTCTTCTGACTCTGGCCGATaGCGTGGACCTTCTGGGCCGTCTCACTTACCAGGCGAGCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: PGHAADADHSSDSGR*RGPSGPSHLPGEQP Trigger: GGGCTGCTCGCCTGGTAAGTGAGACGGCCCAGAAGGTCCACGCCATCGGCCAGAGTCAGAAGAATGATCAGCATCTGCTGCGTGTCCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS GCA 90 bp | ATAGGGTACAGGGCTCTGCAGACAAAGGTGCCACTCTTCAGCAGGTaGAGTGGGGGCCGAGGCTTGGCCATGAGGAGCACGTCGGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: IGYRALQTKVPLFSR*SGGRGLAMRSTSEK Trigger: TTTCTCCGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAGCCCTGTACCCTAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS CCA 90 bp | GTACAGGGCTCTGCAGACAAAGGTGCCACTCTTCAGCAGGTGCAGTaGGGGCCGAGGCTTGGCCATGAGGAGCACGTCGGAGAAAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VQGSADKGATLQQVQ*GPRLGHEEHVGEKE Trigger: TTCCTTTTCTCCGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAGCCCTGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS TCA 90 bp | GCCCTTCTTCCAGATAGGGAAGCAGCTCTAGGCTGGCGGCATAGATaGGCTCCCAGGTCCCAAACAGGGTCTGGAGTTCTGGTGGTCGTA | + |
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Preference number: 5 (lower is better) Translates to: ALLPDREAALGWRHR*APRSQTGSGVLVVV Trigger: TACGACCACCAGAACTCCAGACCCTGTTTGGGACCTGGGAGCTCATCTATGCCGCCAGCCTAGAGCTGCTTCCCTATCTGGAAGAAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS GCA 90 bp | CTGTGGGTCGAGCTCTTCTGGCTGATAGCCAGAGTCAGGCTGTGGTaGCACTGTGACAGCTCCTCCTGGTCAGTAGACATAAGCAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: LWVELFWLIARVRLW*HCDSSSWSVDISSS Trigger: GCTACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCTGGCTATCAGCCAGAAGAGCTCGACCCACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152134.8 |
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| CDS-3UTR CAA 90 bp | TGTAAGATTCTTCATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTAGTGGGGGCCGAGGCTaGGCCATGAGGAGCACGTCG | + |
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Preference number: 5 (lower is better) Translates to: CKILHRHTQLPCVSQDSCSGGRG*AMRSTS Trigger: CGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACT...ACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTATGAAGAATCTTACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS GCA 90 bp | TGGGTCGAGCTCTTCTGGCTTCTGATAGCCAGAGTCAGGCTGTGGTaGCACTGTGACAGCTCCTCCTGGTCAGTAGACATAAGCAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: WVELFWLLIARVRLW*HCDSSSWSVDISSS Trigger: GCTACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCTGGCTATCAGAAGCCAGAAGAGCTCGACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 90 bp | CTGTGGGTCGAGCTCTTCTGGCTTCTGATAGCCAGAGTCAGGCTGTaGTGCCACTGTGACAGCTCCTCCTGGTCAGTAGACATAAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LWVELFWLLIARVRL*CHCDSSSWSVDISS Trigger: ACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCTGGCTATCAGAAGCCAGAAGAGCTCGACCCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 90 bp | CTTCTGTGGGTCGAGCTCTTCTGGCTGATAGCCAGAGTCAGGCTGTaGTGCCACTGTGACAGCTCCTCCTGGTCAGTAGACATAAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LLWVELFWLIARVRL*CHCDSSSWSVDISS Trigger: ACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGCCTGACTCTGGCTATCAGCCAGAAGAGCTCGACCCACAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152134.8 |
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| CDS-3UTR CAA 90 bp | TTCTTCATAGGCACACCCAGCTGCCATGTGTATCCCAGGATAGCTGTGAATATGGGCCACCAGCCCCAGTaGTTCCTGGTAGCGTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: FFIGTPSCHVYPRIAVNMGHQPQ*FLVASL Trigger: GAGCGACGCTACCAGGAACAACTGGGGCTGGTGGCC...CATATTCACAGCTATCCTGGGATACACATGGCAGCTGGGTGTGCCTATGAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS GCA 90 bp | CTTATTCTTCTTCAGCTGCGCCTGAAGGGTAGTCTGAGATCTCTCTaGGTTGGCAGCAAATTGGGCGTAGAGCTCCAGGTGGGGGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: LILLQLRLKGSLRSL*VGSKLGVELQVGAE Trigger: TTCTGCCCCCACCTGGAGCTCTACGCCCAATTTGCTGCCAACGCAGAGAGATCTCAGACTACCCTTCAGGCGCAGCTGAAGAAGAATAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS-3UTR CAA 90 bp | GGGACTTGTTCCACTGAGGCTCAATCGAAGTACATTCCCTTTTGTTCGTGGCTCTGCGTTGGCAGCAAATaGGGCGTAGAGCTCCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: GTCSTEAQSKYIPFCSWLCVGSK*GVELQV Trigger: CACCTGGAGCTCTACGCCCAATTTGCTGCCAACGCA...GAGCCACGAACAAAAGGGAATGTACTTCGATTGAGCCTCAGTGGAACAAGTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CAA 90 bp | CCTGAGTATCCGAGTTCTGGAATTTGTAAGATTCTTCATAGGCACACCCAGCTGGGTCGTAGTGTTCCTTaGGCTTTCAGGATCCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PEYPSSGICKILHRHTQLGRSVP*AFRIRR Trigger: CCTGCGGATCCTGAAAGCCAAAGGAACACTACGACC...CAGCTGGGTGTGCCTATGAAGAATCTTACAAATTCCAGAACTCGGATACTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS-3UTR CAA 90 bp | ATAAATCAGGAAACCATAGGCAATAACAACAAAATGGACTCCTTTTCAAAGCTGAGTGGGGGCCGAGGCTaGGCCATGAGGAGCACGTCG | + |
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Preference number: 5 (lower is better) Translates to: INQETIGNNNKMDSFSKLSGGRG*AMRSTS Trigger: CGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACT...CAGCTTTGAAAAGGAGTCCATTTTGTTGTTATTGCCTATGGTTTCCTGATTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000152134.8 |
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| CDS GCA 72 bp | GGTAGCGTCGCTCGGTCTCCAGCAGCTCCCGAGCGGTaGAGACACGTTTCCGTTCCCAACGAGCACGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GSVARSPAAPER*RHVSVPNEHAA Trigger: AGCAGCGTGCTCGTTGGGAACGGAAACGTGTCTGCACCGCTCGGGAGCTGCTGGAGACCGAGCGACGCTACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS GCA 72 bp | AGGGCTCTGCAGACAAAGGTGCCACTCTTCAGCAGGTaGAGTGGGGGCCGAGGCTTGGCCATGAGGAGCACG | + |
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Preference number: 6 (lower is better) Translates to: RALQTKVPLFSR*SGGRGLAMRST Trigger: CGTGCTCCTCATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAGCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 ENSMUST00000152134.8 |
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| CDS GCA 72 bp | GGCTCCCCAGTGGGAGGCACCACTAAAAGCCAGCCCTaGCGTAGGAACCAGCGGCCTGAAGTCAGCCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: GSPVGGTTKSQP*RRNQRPEVSPF Trigger: AAAAGGGCTGACTTCAGGCCGCTGGTTCCTACGGCAGGGCTGGCTTTTAGTGGTGCCTCCCACTGGGGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 72 bp | TCTGCAGACAAAGGTGCCACTCTTCAGCAGGTGCAGTaGGGGCCGAGGCTTGGCCATGAGGAGCACGTCGGA | + |
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Preference number: 6 (lower is better) Translates to: SADKGATLQQVQ*GPRLGHEEHVG Trigger: TCCGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS CCA 72 bp | CCACTGCCCTTCTTCCAGATAGGGAAGCAGCTCTCGTaGCCACCAGCCCCAGTTGTTCCTGGTAGCGTCGCT | + |
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Preference number: 6 (lower is better) Translates to: PLPFFQIGKQLS*PPAPVVPGSVA Trigger: AGCGACGCTACCAGGAACAACTGGGGCTGGTGGCCACGAGAGCTGCTTCCCTATCTGGAAGAAGGGCAGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136005.3 |
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| CDS CCA 72 bp | TCTGCAGACAAAGGTGCCACTCTTCAGCAGGTGCAGTaGGGGCCGAGGCTTGGCCATGAGGAGCACGTCGNN | + |
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Preference number: 6 (lower is better) Translates to: SADKGATLQQVQ*GPRLGHEEHVX Trigger: NNCGACGTGCTCCTCATGGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152134.8 |
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| CDS TCA 72 bp | CCAGATAGGGAAGCAGCTCTAGGCTGGCGGCATAGATaGGCTCCCAGGTCCCAAACAGGGTCTGGAGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PDREAALGWRHR*APRSQTGSGVL Trigger: CAGAACTCCAGACCCTGTTTGGGACCTGGGAGCTCATCTATGCCGCCAGCCTAGAGCTGCTTCCCTATCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 72 bp | GCAGCAGATGCTGATCATTCTTCTGACTCTGGCCGATaGCGTGGACCTTCTGGGCCGTCTCACTTACCAGGC | + |
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Preference number: 6 (lower is better) Translates to: AADADHSSDSGR*RGPSGPSHLPG Trigger: GCCTGGTAAGTGAGACGGCCCAGAAGGTCCACGCCATCGGCCAGAGTCAGAAGAATGATCAGCATCTGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CAA 72 bp | AAGGGTAGTCTGAGATCTCTCTGCGTTGGCAGCAAATaGGGCGTAGAGCTCCAGGTGGGGGCAGAAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: KGSLRSLCVGSK*GVELQVGAEAL Trigger: CAGGGCTTCTGCCCCCACCTGGAGCTCTACGCCCAATTTGCTGCCAACGCAGAGAGATCTCAGACTACCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS GCA 72 bp | CTTCAGCTGCGCCTGAAGGGTAGTCTGAGATCTCTCTaGGTTGGCAGCAAATTGGGCGTAGAGCTCCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: LQLRLKGSLRSL*VGSKLGVELQV Trigger: CACCTGGAGCTCTACGCCCAATTTGCTGCCAACGCAGAGAGATCTCAGACTACCCTTCAGGCGCAGCTGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054538.13 ENSMUST00000136005.3 |
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| CDS CCA 72 bp | ACAGGGTCTGGAGTTCTGGTGGTCGTAGTGTTCCTTTaGCTTTCAGGATCCGCAGGAAGTACGTGGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: TGSGVLVVVVFL*LSGSAGSTWPP Trigger: TGGTGGCCACGTACTTCCTGCGGATCCTGAAAGCCAAAGGAACACTACGACCACCAGAACTCCAGACCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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| CDS CCA 72 bp | CATGTTGCAGTGACACTTCTGTGGGTCGAGCTCTTCTaGCTGATAGCCAGAGTCAGGCTGTGGTGCCACTGT | + |
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Preference number: 6 (lower is better) Translates to: HVAVTLLWVELF*LIARVRLWCHC Trigger: ACAGTGGCACCACAGCCTGACTCTGGCTATCAGCCAGAAGAGCTCGACCCACAGAAGTGTCACTGCAACATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152134.8 |
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| CDS CAA 72 bp | AACAGGGTCTGGAGTTCTGGTGGTCGTAGTGTTCCTTaGGCTTTCAGGATCCGCAGGAAGTACGTGGCCACC | + |
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Preference number: 6 (lower is better) Translates to: NRVWSSGGRSVP*AFRIRRKYVAT Trigger: GGTGGCCACGTACTTCCTGCGGATCCTGAAAGCCAAAGGAACACTACGACCACCAGAACTCCAGACCCTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054538.13 |
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