RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGEF37 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045094

Ensembl transcript IDs: ENSMUST00000171629.3, ENSMUST00000236608.2, ENSMUST00000237557.2

Found 274 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTGTCCTACGTCTTGGGCCTCACATCTACCCAACCTCAGCTCCCTaGAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCACCTGTGTTC +
Preference number: 1 (lower is better)
Translates to: CVLRLGPHIYPTSAP*SLHGLRGKPRPPVF
Trigger: GAACACAGGTGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTGCAGGGAGCTGAGGTTGGGTAGATGTGAGGCCCAAGACGTAGGACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp CAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTaGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGA +
Preference number: 1 (lower is better)
Translates to: QPHTPTDPPSNSPLP*NRLRVCTHSPDLCR
Trigger: TCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR TCA 90 bp GGTCAGAGCCTGGGCTTAAGGAAAAGGACACTGTTGGCTTGGACATaGGGGGTGGCACAGGACTGCTTTACTCTGCTAACCCAAGCCAGC +
Preference number: 1 (lower is better)
Translates to: GQSLGLRKRTLLAWT*GVAQDCFTLLTQAS
Trigger: GCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTTTCCTTAAGCCCAGGCTCTGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp GCTAAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATaGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAG +
Preference number: 1 (lower is better)
Translates to: AKQARGSKPVKNIPP*PLHQLLLPDLLEFQ
Trigger: CTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 90 bp AAACACCACGAGTCTAGACCATTGCAATCAGCCTCACACACCCACTaGTCCACCCTCAAATTCCCCTCTTCCCTGGAACCGCCTCCGAGT +
Preference number: 1 (lower is better)
Translates to: KHHESRPLQSASHTH*STLKFPSSLEPPPS
Trigger: ACTCGGAGGCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAGACTCGTGGTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CCA 90 bp CCCATTCCCAGACCCAGTAGAGGATCTCCTCAGAACCTAGGCCCATaGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTGTTCACAGT +
Preference number: 1 (lower is better)
Translates to: PIPRPSRGSPQNLGP*LPLEQDSSQFTVHS
Trigger: ACTGTGAACAGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGGAGATCCTCTACTGGGTCTGGGAATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CCA 90 bp CAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCACCTGTGTTCTCTaGTTCTTCTACCCAGAACCAGGAAATCACACCATCCTTCACCTA +
Preference number: 1 (lower is better)
Translates to: QPPWPQRQTQATCVL*FFYPEPGNHTILHL
Trigger: TAGGTGAAGGATGGTGTGATTTCCTGGTTCTGGGTAGAAGAACCAGAGAACACAGGTGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 90 bp ATGAGCTTCGAGCTGTGGCAAGCCCTAGCTAATCAGCTGTGGCCTTaGGATGGCTTCTTTATGCAGACAAGAGTGGCACTGCTGAGCCAC +
Preference number: 1 (lower is better)
Translates to: MSFELWQALANQLWP*DGFFMQTRVALLSH
Trigger: GTGGCTCAGCAGTGCCACTCTTGTCTGCATAAAGAAGCCATCTCAAGGCCACAGCTGATTAGCTAGGGCTTGCCACAGCTCGAAGCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 90 bp AAGACACAGGGCATGTCTCGAAATGTGTCTATTGTTAATCCATGCTaGCTGTGCCTGGGGTCAGAGCCTGGGCTTAAGGAAAAGGACACT +
Preference number: 1 (lower is better)
Translates to: KTQGMSRNVSIVNPC*LCLGSEPGLKEKDT
Trigger: AGTGTCCTTTTCCTTAAGCCCAGGCTCTGACCCCAGGCACAGTCAGCATGGATTAACAATAGACACATTTCGAGACATGCCCTGTGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR GCA 90 bp GTGTACTATCAAGCCAGACAGGTCTGGTCTTCTTCAGAGATGCCCTaGCTGCGACTAACACAAGCAACATTCATCCTAAACATGAGAGAG +
Preference number: 1 (lower is better)
Translates to: VYYQARQVWSSSEMP*LRLTQATFILNMRE
Trigger: CTCTCTCATGTTTAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGACCAGACCTGTCTGGCTTGATAGTACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp GACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCTAGGTaGAAAAGTGCAGTTGTGTCCTACGTCTTGGGCCTCACATCTACC +
Preference number: 1 (lower is better)
Translates to: DIHSYHIPRLGYFPR*KSAVVSYVLGLTST
Trigger: GGTAGATGTGAGGCCCAAGACGTAGGACACAACTGCACTTTTCCACCTAGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp CCCAAGAGTGAAATAAATAAGACACAGTGCAATGGCTCTAGGCATTaGGGTAAAAAGGCACATTACACAGAGTCCCTTGGAGAAAATCCA +
Preference number: 1 (lower is better)
Translates to: PKSEINKTQCNGSRH*GKKAHYTESLGENP
Trigger: TGGATTTTCTCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCACTGTGTCTTATTTATTTCACTCTTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp TCCGTACGTCCTCTCTCACTCTCCAGTGATTTTAATCTCACCCTCTaGTCTGAGAAACTACAACCCACATGTACTGACTACATTTTTATT +
Preference number: 1 (lower is better)
Translates to: SVRPLSLSSDFNLTL*SEKLQPTCTDYIFI
Trigger: AATAAAAATGTAGTCAGTACATGTGGGTTGTAGTTTCTCAGACCAGAGGGTGAGATTAAAATCACTGGAGAGTGAGAGAGGACGTACGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 90 bp TCAAGAGCCCTTCAGAAGCCAAAGTTAACAAACAGGCACTTGAGTTaGAAAAACAAATGTAGTCTTGAAAACACTGAAGTAGCCACCTGT +
Preference number: 1 (lower is better)
Translates to: SRALQKPKLTNRHLS*KNKCSLENTEVATC
Trigger: ACAGGTGGCTACTTCAGTGTTTTCAAGACTACATTTGTTTTTCCAACTCAAGTGCCTGTTTGTTAACTTTGGCTTCTGAAGGGCTCTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 90 bp ATATTAAGTCTTTTATTGCCAGTCCTTCACACCATGCTCATCACGTaGCTCAAGAATTTATCCATCTTCCCTTGGGTAATACAGTCGTCT +
Preference number: 1 (lower is better)
Translates to: ILSLLLPVLHTMLIT*LKNLSIFPWVIQSS
Trigger: AGACGACTGTATTACCCAAGGGAAGATGGATAAATTCTTGAGTCACGTGATGAGCATGGTGTGAAGGACTGGCAATAAAAGACTTAATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR TCA 90 bp CCAGAGCGCCAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTCAAGAGTGGCACTGCTaGGCCACCCACTGTGGCCTC +
Preference number: 2 (lower is better)
Translates to: PERQASSHLSHRAPPALTQEWHC*ATHCGL
Trigger: GAGGCCACAGTGGGTGGCTCAGCAGTGCCACTCTTG...AGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTGGCGCTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR TCA 90 bp GGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCAGGAAAGAGGTAGGATaGGCTTCGAGCTGTGGCAAG +
Preference number: 2 (lower is better)
Translates to: GTASEFVHTVQTCAETTPRKEVG*ASSCGK
Trigger: CTTGCCACAGCTCGAAGCTCATCCTACCTCTTTCCT...GGGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR GCA 90 bp CAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGAACCGCATCCCATTCCCACTGTaGTTTGTGCCATGTCCCCTA +
Preference number: 2 (lower is better)
Translates to: QPHTPTDPPSNSPLPWNRIPFPL*FVPCPL
Trigger: TAGGGGACATGGCACAAAGCACAGTGGGAATGGGAT...GCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR GCA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTCCAACCTCAGCTCCCTaGAGCCTCCATGGCCTCAGA +
Preference number: 2 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESPTSAP*SLHGLR
Trigger: TCTGAGGCCATGGAGGCTGCAGGGAGCTGAGGTTGG...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CCA 90 bp AGGGGTGGCACAGGACTGCTTTACTCTGCTAACCCAAGCCAGCCAATGGCTGCGGTTTCCTGGCAACGCTaGGGGAAGTGTACTATCAAG +
Preference number: 2 (lower is better)
Translates to: RGGTGLLYSANPSQPMAAVSWQR*GKCTIK
Trigger: CTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAAC...CGCAGCCATTGGCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR-3UTR CCA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTCTGAGCCACCCACTGTaGCCTCCCACACTAGGCATT +
Preference number: 2 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSLSHPL*PPTLGI
Trigger: AATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAG...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CCA 90 bp GCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGACCACATCCCACGACTTaGTTATTTTCCCAGAGCGCC +
Preference number: 2 (lower is better)
Translates to: AISLTHPLIHPQIPLFPGPHPTT*LFSQSA
Trigger: GGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGG...TCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
3UTR CAA 90 bp AAGCCAGCCAATGGCTGCGCCATCCCGACGCCACTAACAGTCTTTTaGTTAGTGTCACGCTTCCTGGTTGACAAGGATCCTCAGCCTCAT +
Preference number: 2 (lower is better)
Translates to: KPANGCAIPTPLTVF*LVSRFLVDKDPQPH
Trigger: ATGAGGCTGAGGATCCTTGTCAACCAGGAAGCGTGACACTAACAAAAAGACTGTTAGTGGCGTCGGGATGGCGCAGCCATTGGCTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CAA 90 bp ACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTaGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAATGTGGA +
Preference number: 2 (lower is better)
Translates to: TSLHGLCISSCFLTC*SSSPDFLGDEQQCG
Trigger: TCCACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR TCA 90 bp AGGGGTGGCACAGGACTGCTTTACTCTGCTAACCCAAGCCAGCCAATGGCTGCGGCAAGAAAGAAAAGATaGGTAGTGAGCCGTGGTGTT +
Preference number: 2 (lower is better)
Translates to: RGGTGLLYSANPSQPMAAARKKR*VVSRGV
Trigger: AACACCACGGCTCACTACTCATCTTTTCTTTCTTGC...CGCAGCCATTGGCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR-3UTR TCA 90 bp AAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACTCTGCGAGCTCCACCAGCATTaGCTGCCAAGTTCCTTTGTC +
Preference number: 2 (lower is better)
Translates to: KGHCWLGHEGWHRTALLCELHQH*LPSSFV
Trigger: GACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTC...GCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CCA 90 bp AAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACTCTGCAATTCCCCTCTTCCCTaGAACCGCCTCCGAGTTTGT +
Preference number: 2 (lower is better)
Translates to: KGHCWLGHEGWHRTALLCNSPLP*NRLRVC
Trigger: ACAAACTCGGAGGCGGTTCCAGGGAAGAGGGGAATT...GCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTaGGTTATTTTCCCAGAGCGCCAGGCCAGTAGTCACCTGTCTCAC +
Preference number: 2 (lower is better)
Translates to: RILSLMTYILTTSHD*VIFPERQASSHLSH
Trigger: GTGAGACAGGTGACTACTGGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
3UTR-3UTR TCA 90 bp TGCAATGGCTCTAGGCATTGGGGTAAAAAGGCACATTACACAGAGTCCCTTGGAGTCACGCTTCCTGGTTaGCAAGGATCCTCAGCCTCA +
Preference number: 2 (lower is better)
Translates to: CNGSRHWGKKAHYTESLGVTLPG*QGSSAS
Trigger: TGAGGCTGAGGATCCTTGTCAACCAGGAAGCGTGAC...TCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CCA 90 bp AAGGAAAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACGCTGTGGCCTTGAGATaGCTTCTTTATGCAGACAAG +
Preference number: 2 (lower is better)
Translates to: KEKDTVGLDMRGGTGLLYAVALR*LLYADK
Trigger: CTTGTCTGCATAAAGAAGCCATCTCAAGGCCACAGC...GTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTTTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CCA 90 bp ACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGCATTATAGATGGTCTGTCACAGTTTCCTGGCAACGCTaGGGGAAGTGTACTATCAAG +
Preference number: 2 (lower is better)
Translates to: TVGALTSPEEAHYRWSVTVSWQR*GKCTIK
Trigger: CTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAAC...TGTGACAGACCATCTATAATGCGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR TCA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGGCAAGAAAGAAAAGATaGGTAGTGAGCCGTGGTGTT +
Preference number: 2 (lower is better)
Translates to: QQCGSVSRITLSSPTASWARKKR*VVSRGV
Trigger: AACACCACGGCTCACTACTCATCTTTTCTTTCTTGC...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTaGGTTATTTTCCTAGGTGGAAAAGTGCAGTTGTGTCCTACGTCT +
Preference number: 2 (lower is better)
Translates to: RILSLMTYILTTSHD*VIFLGGKVQLCPTS
Trigger: AGACGTAGGACACAACTGCACTTTTCCACCTAGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 90 bp ATGACTTGCTCACTAAGTACTAGGCATTGGGACTTTGGCTCTAGATaGTATCCAATGTCACATGCCATGCAACAGCCAGCTACAGATAAC +
Preference number: 2 (lower is better)
Translates to: MTCSLSTRHWDFGSR*YPMSHAMQQPATDN
Trigger: GTTATCTGTAGCTGGCTGTTGCATGGCATGTGACATTGGATACAATCTAGAGCCAAAGTCCCAATGCCTAGTACTTAGTGAGCAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR GCA 90 bp GAACAGGCTGTTCTATTACAAACTGCTTCTAAAGCTTCCTGCTTAGATAGCCAGTCCACCAGCATTGACTaGCAAGTTCCTTTGTCTCCT +
Preference number: 2 (lower is better)
Translates to: EQAVLLQTASKASCLDSQSTSID*QVPLSP
Trigger: AGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGA...CTGGCTATCTAAGCAGGAAGCTTTAGAAGCAGTTTGTAATAGAACAGCCTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR GCA 90 bp ACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGCATTATAGATGGTCTGTCACAATAACCTTGTTATTTTaGACACTCCATGATGTTCAC +
Preference number: 2 (lower is better)
Translates to: TVGALTSPEEAHYRWSVTITLLF*TLHDVH
Trigger: GTGAACATCATGGAGTGTGCAAAATAACAAGGTTAT...TGTGACAGACCATCTATAATGCGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 90 bp CTGTTTTATGCTGTCTCTCAAGAGGGTCAATTCCAAATTTGTCGGTaGTATAGAGATCATAGTGGATCACCTTTTTCACTGTCTTGGGAT +
Preference number: 2 (lower is better)
Translates to: LFYAVSQEGQFQICR*YRDHSGSPFSLSWD
Trigger: ATCCCAAGACAGTGAAAAAGGTGATCCACTATGATCTCTATACAACCGACAAATTTGGAATTGACCCTCTTGAGAGACAGCATAAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR GCA 72 bp CGTCTTGGGCCTCACATCTACCCAACCTCAGCTCCCTaGAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCA +
Preference number: 3 (lower is better)
Translates to: RLGPHIYPTSAP*SLHGLRGKPRP
Trigger: TGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTGCAGGGAGCTGAGGTTGGGTAGATGTGAGGCCCAAGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CAA 90 bp AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACGCCCATGGCTTCCCCTaGAGCAGGACTCTTCACAGT +
Preference number: 3 (lower is better)
Translates to: KPVKNIPPWPLHQLLLPDAHGFP*SRTLHS
Trigger: ACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGC...GTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp ACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTaGAACCGCCTCCGAGTTTGTACACACAGTCCAGAC +
Preference number: 3 (lower is better)
Translates to: TPTDPPSNSPLP*NRLRVCTHSPD
Trigger: GTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR-3UTR CAA 90 bp AAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACTCTGCGGTGGAAAAGTGCAGTaGTGTCCTACGTCTTGGGCC +
Preference number: 3 (lower is better)
Translates to: KGHCWLGHEGWHRTALLCGGKVQ*CPTSWA
Trigger: GGCCCAAGACGTAGGACACAACTGCACTTTTCCACC...GCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 72 bp GAGTCTAGACCATTGCAATCAGCCTCACACACCCACTaGTCCACCCTCAAATTCCCCTCTTCCCTGGAACCG +
Preference number: 3 (lower is better)
Translates to: ESRPLQSASHTH*STLKFPSSLEP
Trigger: CGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR GCA 72 bp CTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTaGTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAA +
Preference number: 3 (lower is better)
Translates to: LHGLCISSCFLT*LSSSPDFLGDE
Trigger: TTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp AGACCCAGTAGAGGATCTCCTCAGAACCTAGGCCCATaGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACT +
Preference number: 3 (lower is better)
Translates to: RPSRGSPQNLGP*LPLEQDSSQFT
Trigger: AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGGAGATCCTCTACTGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CCA 72 bp CAGGACTGCTTTACTCTGCTAACCCAAGCCAGCCAATaGCTGCGCCATCCCGACGCCACTAACAGTCTTTTT +
Preference number: 3 (lower is better)
Translates to: QDCFTLLTQASQ*LRHPDATNSLF
Trigger: AAAAAGACTGTTAGTGGCGTCGGGATGGCGCAGCCATTGGCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR TCA 72 bp GAGCTGTGGCAAGCCCTAGCTAATCAGCTGTGGCCTTaGGATGGCTTCTTTATGCAGACAAGAGTGGCACTG +
Preference number: 3 (lower is better)
Translates to: ELWQALANQLWP*DGFFMQTRVAL
Trigger: CAGTGCCACTCTTGTCTGCATAAAGAAGCCATCTCAAGGCCACAGCTGATTAGCTAGGGCTTGCCACAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 72 bp CTGGGCTTAAGGAAAAGGACACTGTTGGCTTGGACATaGGGGGTGGCACAGGACTGCTTTACTCTGCTAACC +
Preference number: 3 (lower is better)
Translates to: LGLRKRTLLAWT*GVAQDCFTLLT
Trigger: GGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTTTCCTTAAGCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp TGTAAGGGATTTCCTCAATTAGTGATCAAGGGGGAATaGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTA +
Preference number: 3 (lower is better)
Translates to: CKGFPQLVIKGE*PLVGGTISGLV
Trigger: TACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCATTCCCCCTTGATCACTAATTGAGGAAATCCCTTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 72 bp GGCATGTCTCGAAATGTGTCTATTGTTAATCCATGCTaGCTGTGCCTGGGGTCAGAGCCTGGGCTTAAGGAA +
Preference number: 3 (lower is better)
Translates to: GMSRNVSIVNPC*LCLGSEPGLKE
Trigger: TTCCTTAAGCCCAGGCTCTGACCCCAGGCACAGTCAGCATGGATTAACAATAGACACATTTCGAGACATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR GCA 72 bp TCAGTGAAAAGCCGTGGAAGCTGCAGGTCCCGTTCCTaGTTTGTCATGTTTGTCTGTGCTTCCCACTTTGAT +
Preference number: 3 (lower is better)
Translates to: SVKSRGSCRSRS*FVMFVCASHFD
Trigger: ATCAAAGTGGGAAGCACAGACAAACATGACAAAGCAGGAACGGGACCTGCAGCTTCCACGGCTTTTCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR GCA 72 bp CTTCACAATGAGCTGTCAGTGAAAAGCCGTGGAAGCTaGAGGTCCCGTTCCTGCTTTGTCATGTTTGTCTGT +
Preference number: 3 (lower is better)
Translates to: LHNELSVKSRGS*RSRSCFVMFVC
Trigger: ACAGACAAACATGACAAAGCAGGAACGGGACCTGCAGCTTCCACGGCTTTTCACTGACAGCTCATTGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp TCTTACCACATCCCACGACTTGGTTATTTTCCTAGGTaGAAAAGTGCAGTTGTGTCCTACGTCTTGGGCCTC +
Preference number: 3 (lower is better)
Translates to: SYHIPRLGYFPR*KSAVVSYVLGL
Trigger: GAGGCCCAAGACGTAGGACACAACTGCACTTTTCCACCTAGGAAAATAACCAAGTCGTGGGATGTGGTAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp GAAATGTGTCTATTGTTAATCCATGCTGACTGTGCCTaGGGTCAGAGCCTGGGCTTAAGGAAAAGGACACTG +
Preference number: 3 (lower is better)
Translates to: EMCLLLIHADCA*GQSLGLRKRTL
Trigger: CAGTGTCCTTTTCCTTAAGCCCAGGCTCTGACCCCAGGCACAGTCAGCATGGATTAACAATAGACACATTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CAA 90 bp CGTCCTCTCTCACTCTCCAGTGATTTTAATCTCACCCTCTGGTCTGAGAAACTACGAACGGGGTCTTCTTaGAGGGGTTTGTTTCCAGAT +
Preference number: 3 (lower is better)
Translates to: RPLSLSSDFNLTLWSEKLRTGSS*RGLFPD
Trigger: ATCTGGAAACAAACCCCTCAAAGAAGACCCCGTTCG...TAGTTTCTCAGACCAGAGGGTGAGATTAAAATCACTGGAGAGTGAGAGAGGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CAA 90 bp GGCACATTACACAGAGTCCCTTGGAGAAAATCCAGGCCACGCTCCATCCTCTCCTTCCAAATTTGTCGGTaGTATAGAGATCATAGTGGA +
Preference number: 3 (lower is better)
Translates to: GTLHRVPWRKSRPRSILSFQICR*YRDHSG
Trigger: TCCACTATGATCTCTATACAACCGACAAATTTGGAA...GGAGAGGATGGAGCGTGGCCTGGATTTTCTCCAAGGGACTCTGTGTAATGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR-3UTR CAA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTAGTGATGTCATAACCTaGTTATTTTGCACACTCCAT +
Preference number: 3 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESSDVIT*LFCTLH
Trigger: ATGGAGTGTGCAAAATAACAAGGTTATGACATCACT...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp CCTCTCTCACTCTCCAGTGATTTTAATCTCACCCTCTaGTCTGAGAAACTACAACCCACATGTACTGACTAC +
Preference number: 3 (lower is better)
Translates to: PLSLSSDFNLTL*SEKLQPTCTDY
Trigger: GTAGTCAGTACATGTGGGTTGTAGTTTCTCAGACCAGAGGGTGAGATTAAAATCACTGGAGAGTGAGAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR GCA 72 bp CAGGCTGTTCTATTACAAACTGCTTCTAAAGCTTCCTaGTTAGATAGCCAGTACAAAGCTCAGGCATGGCAT +
Preference number: 3 (lower is better)
Translates to: QAVLLQTASKAS*LDSQYKAQAWH
Trigger: ATGCCATGCCTGAGCTTTGTACTGGCTATCTAAGCAGGAAGCTTTAGAAGCAGTTTGTAATAGAACAGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp GAAATAAATAAGACACAGTGCAATGGCTCTAGGCATTaGGGTAAAAAGGCACATTACACAGAGTCCCTTGGA +
Preference number: 3 (lower is better)
Translates to: EINKTQCNGSRH*GKKAHYTESLG
Trigger: TCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCACTGTGTCTTATTTATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR TCA 72 bp CTTTTATTGCCAGTCCTTCACACCATGCTCATCACGTaGCTCAAGAATTTATCCATCTTCCCTTGGGTAATA +
Preference number: 3 (lower is better)
Translates to: LLLPVLHTMLIT*LKNLSIFPWVI
Trigger: TATTACCCAAGGGAAGATGGATAAATTCTTGAGTCACGTGATGAGCATGGTGTGAAGGACTGGCAATAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CCA 72 bp TATAGAGATCATAGTGGATCACCTTTTTCACTGTCTTaGGATCTTCCAATGACTCTTGACCTAAAGCAACAA +
Preference number: 3 (lower is better)
Translates to: YRDHSGSPFSLS*DLPMTLDLKQQ
Trigger: TTGTTGCTTTAGGTCAAGAGTCATTGGAAGATCCCAAGACAGTGAAAAAGGTGATCCACTATGATCTCTATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp TGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGGCAGAGGTGGCTCTCTaGAGGGCAGGGTGGGCGCTG +
Preference number: 4 (lower is better)
Translates to: WCFLATLGEVYYQARQVWAEVAL*RAGWAL
Trigger: CAGCGCCCACCCTGCCCTTCAGAGAGCCACCTCTGC...CCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp GGGGTCTTGCTCTTGCATCACACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGCCTTCTGGTACGCCTTaGCCAGCAGCAGGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: GVLLLHHTVGALTSPEEAPSGTP*PAAGPG
Trigger: ACCAGGCCCTGCTGCTGGTCAAGGCGTACCAGAAGG...CGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGTGTGATGCAAGAGCAAGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp CTTCCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCCTGGAAGGAGTGGCTaGGTGGTGGAGGGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: LPWNRLRVCTHSPDLCRDPGRSG*VVEGGS
Trigger: GCTTCCACCCTCCACCACTCAGCCACTCCTTCCAGG...GTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp AGGGGTGGCACAGGACTGCTTTACTCTGCTAACCCAAGCCAGCCAATGGCTGCGGGCGGAGCTGACTGCTaGTCTGGCCTAGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: RGGTGLLYSANPSQPMAAGGADC*SGLVCA
Trigger: AGCACACACTAGGCCAGAGCAGCAGTCAGCTCCGCC...CGCAGCCATTGGCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CTTCCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCTGCAGGCTGTCTCCTaGAGCCCTCGAAGGAACCTG +
Preference number: 4 (lower is better)
Translates to: LPWNRLRVCTHSPDLCRDLQAVS*SPRRNL
Trigger: CAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAG...GTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp GGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCGAAGGAGTGGCTGAGTaGTGGAGGGTGGAAGCACCT +
Preference number: 4 (lower is better)
Translates to: GTASEFVHTVQTCAETTPEGVAE*WRVEAP
Trigger: AGGTGCTTCCACCCTCCACCACTCAGCCACTCCTTC...GGGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTGGAAGTCCGGCTCTaGGACGTGGTGATGAGGCAG +
Preference number: 4 (lower is better)
Translates to: QASSHLSHRAPPALTAKFLEVRL*DVVMRQ
Trigger: CTGCCTCATCACCACGTCTCAGAGCCGGACTTCCAG...GAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp GGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCGAGTCCCAGTCCCGTTaGTGTTGCTTGACACCTGGT +
Preference number: 4 (lower is better)
Translates to: GTASEFVHTVQTCAETTPESQSR*CCLTPG
Trigger: ACCAGGTGTCAAGCAACATCAACGGGACTGGGACTC...GGGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp GGGGTCTTGCTCTTGCATCACACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGTCCCTGTCTGGCCTCTaGGCTCCTTCTCACTGGGAA +
Preference number: 4 (lower is better)
Translates to: GVLLLHHTVGALTSPEEASLSGL*APSHWE
Trigger: TTCCCAGTGAGAAGGAGCTCAGAGGCCAGACAGGGA...CGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGTGTGATGCAAGAGCAAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp CCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCGCAGCAGAGCCATGGTaGTCTCTGCCCTTCGTAGCA +
Preference number: 4 (lower is better)
Translates to: PWCFLATLGEVYYQARQVAAEPW*SLPFVA
Trigger: TGCTACGAAGGGCAGAGAGCACCATGGCTCTGCTGC...GACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp GTAGTGAGCCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGGCGGAGCTGACTGCTaGTCTGGCCTAGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: VVSRGVSWQRWGKCTIKPGGADC*SGLVCA
Trigger: AGCACACACTAGGCCAGAGCAGCAGTCAGCTCCGCC...TGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGGCTCACTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CTGCAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCACCTGTGTTCTCTGGTTCCAGGACTCTCTGACTTaGAAGAGGCCTCATCTGCTC +
Preference number: 4 (lower is better)
Translates to: LQPPWPQRQTQATCVLWFQDSLT*KRPHLL
Trigger: GAGCAGATGAGGCCTCTTCCAAGTCAGAGAGTCCTG...GAACCAGAGAACACAGGTGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp AGTGGCACTGCTGAGCCACCCACTGTGGCCTCCCACACTAGGCATTCTGTAAGGGGCCAGACTGCACAATaGTTGCCACACCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SGTAEPPTVASHTRHSVRGQTAQ*LPHQAS
Trigger: AGAAGCCTGGTGTGGCAACCATTGTGCAGTCTGGCC...CCTTACAGAATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAGCAGTGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp GGGGGAATGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCCACTGCATGACGAGTTaGTTAAACTGTGGGAGCTCG +
Preference number: 4 (lower is better)
Translates to: GGMAPCGWDHLWAGSLGFHCMTS*LNCGSS
Trigger: CGAGCTCCCACAGTTTAACCAACTCGTCATGCAGTG...GAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCATTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp TTATTTTCCCAGAGCGCCAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGAGACCCTGGAAGGAGTaGCTGAGTGGTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: LFSQSARPVVTCLTELHQRPWKE*LSGGGW
Trigger: CCACCCTCCACCACTCAGCCACTCCTTCCAGGGTCT...CTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTGGCGCTCTGGGAAAATAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTGAGCTGGGTGGGCTCTaGGGCTGGAAGCCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESELGGL*GWKPGV
Trigger: GACTCCTGGCTTCCAGCCCCAGAGCCCACCCAGCTC...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp GTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTCTGGAGCTGGGTGGGCTCTaGGGCTGGAAGCCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: VSQSSTSIDCQVPLSPSLELGGL*GWKPGV
Trigger: GACTCCTGGCTTCCAGCCCCAGAGCCCACCCAGCTC...CAGACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTAAAGAGTATGTGTGTTaGTGCGGGCCAGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTKEYVC*CGPAAP
Trigger: GGGAGCGGCTGGCCCGCATCAACACACATACTCTTT...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCGAGTCCCAGTCCCGTTaGTGTTGCTTGACACCTGGT +
Preference number: 4 (lower is better)
Translates to: PWCFLATLGEVYYQARQVESQSR*CCLTPG
Trigger: ACCAGGTGTCAAGCAACATCAACGGGACTGGGACTC...GACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp AACCTCAGCTCCCTGCAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCACCTGTCCTTCTCACTGGGAATaGTGGGGTGGTATAACTGAA +
Preference number: 4 (lower is better)
Translates to: NLSSLQPPWPQRQTQATCPSHWE*WGGITE
Trigger: TTCAGTTATACCACCCCATCATTCCCAGTGAGAAGG...ACAGGTGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTGCAGGGAGCTGAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp TGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCCCTGGATCTCCTTCTaGAGTTCTGGCTCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: WNRLRVCTHSPDLCRDHTPWISF*SSGSFW
Trigger: CCAGAAGGAGCCAGAACTGCAGAAGGAGATCCAGGG...GGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp GGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCGACTCAGTTCGTGGGTaGTTCTGGCCACAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: GTASEFVHTVQTCAETTPDSVRG*FWPQKG
Trigger: ACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTC...GGGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp GGCACATTACACAGAGTCCCTTGGAGAAAATCCAGGCCACGCTCCATCCTCTCCGCCCCTCTGTCCGTTTaGTTCCACCAGGCTCCATTC +
Preference number: 4 (lower is better)
Translates to: GTLHRVPWRKSRPRSILSAPLSV*FHQAPF
Trigger: GAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGC...GGAGAGGATGGAGCGTGGCCTGGATTTTCTCCAAGGGACTCTGTGTAATGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp CCAGAGCGCCAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTCGAAGGTCCAGCTTGTaGCATGGCAGCTTCGATGAT +
Preference number: 4 (lower is better)
Translates to: PERQASSHLSHRAPPALTRRSSL*HGSFDD
Trigger: ATCATCGAAGCTGCCATGCCACAAGCTGGACCTTCG...AGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTGGCGCTCTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp CAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGAACCGCCACAGAGACACCCACTaGAATCTCTCCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: QPHTPTDPPSNSPLPWNRHRDTH*NLSSRS
Trigger: TGACCTGGAGGAGAGATTCCAGTGGGTGTCTCTGTG...GCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTGACCAGCCAGGGCTCTaGCCAGACTGCACAATGGTT +
Preference number: 4 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTDQPGL*PDCTMV
Trigger: AACCATTGTGCAGTCTGGCCAGAGCCCTGGCTGGTC...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp TGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCTCGGCGAGGTCTCTCTaGAGGACCACAAATGTGCAC +
Preference number: 4 (lower is better)
Translates to: WNRLRVCTHSPDLCRDHTSARSL*RTTNVH
Trigger: GTGCACATTTGTGGTCCTCCAGAGAGACCTCGCCGA...GGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGTCTTCTTCGAAGGAGTGGCTGAGTaGTGGAGGGTGGAAGCACCT +
Preference number: 4 (lower is better)
Translates to: PGNAGGSVLSSQTGLVFFEGVAE*WRVEAP
Trigger: AGGTGCTTCCACCCTCCACCACTCAGCCACTCCTTC...GAAGAAGACCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTAGAAGGGCCACGATTTaGCCCCGCAGCAGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPRRATI*PRSRVR
Trigger: CCTGACCCTGCTGCGGGGCCAAATCGTGGCCCTTCT...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp AAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACTCTGCGGTGGGCTCTGGGGCTaGAAGCCAGGAGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: KGHCWLGHEGWHRTALLCGGLWG*KPGVFM
Trigger: CATGAAGACTCCTGGCTTCCAGCCCCAGAGCCCACC...GCAGAGTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp AGGGGTGGCACAGGACTGCTTTACTCTGCTAACCCAAGCCAGCCAATGGCTGCGCACCTGACTCATGGTTaGGACAGTGGGAACAGAGAG +
Preference number: 4 (lower is better)
Translates to: RGGTGLLYSANPSQPMAAHLTHG*DSGNRE
Trigger: CTCTCTGTTCCCACTGTCCCAACCATGAGTCAGGTG...CGCAGCCATTGGCTGGCTTGGGTTAGCAGAGTAAAGCAGTCCTGTGCCACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CAA 72 bp CCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTaGGGTTCTATAAGAGAGCAGGCTAAGCAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: PLVGGTISGLVV*GSIREQAKQAR
Trigger: CCTGGCTTGCTTAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp AAAAGCCGTGGAAGCTGCAGGTCCCGTTCCTGCTTTGTCATGTTTGTCTGTGCTCTGATGGCCAGCCTCTaGTGGAGCAGCGATCTGTCC +
Preference number: 4 (lower is better)
Translates to: KSRGSCRSRSCFVMFVCALMASL*WSSDLS
Trigger: GGACAGATCGCTGCTCCATCAGAGGCTGGCCATCAG...AGCACAGACAAACATGACAAAGCAGGAACGGGACCTGCAGCTTCCACGGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGCAGAGGTGGCTCTCTaGAGGGCAGGGTGGGCGCTG +
Preference number: 4 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLAEVAL*RAGWAL
Trigger: CAGCGCCCACCCTGCCCTTCAGAGAGCCACCTCTGC...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCCAATCAGGTGCGCTTaGTCCTCTTCCCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: KPVKNIPPWPLHQLLLPDPIRCA*SSSLQA
Trigger: AGCCTGCAGGGAAGAGGAGCAAGCGCACCTGATTGG...GTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTGTGGGCGCTGGCATCTaGAGGTGTGTTCTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTVGAGI*RCVLQN
Trigger: ATTCTGGAGAACACACCTGCAGATGCCAGCGCCCAC...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTGGAGGACCACAAATGTaGACAGGATCTGACCCAGCC +
Preference number: 4 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTGGPQM*TGSDPA
Trigger: GGCTGGGTCAGATCCTGTGCACATTTGTGGTCCTCC...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGAGGCCAGACTGCACAATaGTTGCCACACCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: AISLTHPLIHPQIPLFPGGQTAQ*LPHQAS
Trigger: AGAAGCCTGGTGTGGCAACCATTGTGCAGTCTGGCC...TCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGACTGGTGTTCAGACCCTaGAAGGAGTGGCTGAGTGGT +
Preference number: 4 (lower is better)
Translates to: AISLTHPLIHPQIPLFPGLVFRP*KEWLSG
Trigger: ACCACTCAGCCACTCCTTCCAGGGTCTGAACACCAG...TCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp TGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCACCTGACTCATGGTTaGGACAGTGGGAACAGAGAG +
Preference number: 4 (lower is better)
Translates to: WNRLRVCTHSPDLCRDHTHLTHG*DSGNRE
Trigger: CTCTCTGTTCCCACTGTCCCAACCATGAGTCAGGTG...GGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CAA 72 bp CTCAAATTCCCCTCTTCCCTGGAACCGCCTCCGAGTTaGTACACACAGTCCAGACCTGTGCAGAGACCACAC +
Preference number: 4 (lower is better)
Translates to: LKFPSSLEPPPS*YTQSRPVQRPH
Trigger: GTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAGAGGGGAATTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp AAGGAAAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACCTGTCCTCAGAGCCCTaGTCTTCCTGCTCAGGACTC +
Preference number: 4 (lower is better)
Translates to: KEKDTVGLDMRGGTGLLYLSSEP*SSCSGL
Trigger: GAGTCCTGAGCAGGAAGATCAGGGCTCTGAGGACAG...GTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTTTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTTCCCTGTCTGGCCTCTaGGCTCCTTCTCACTGGGAA +
Preference number: 4 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSSLSGL*APSHWE
Trigger: TTCCCAGTGAGAAGGAGCTCAGAGGCCAGACAGGGA...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CTCTGCATGTCTAGGGCAGAGGTCCTCAGCGTGGCTGCGTGTGAGATTCACCTGAGACTGCACAATGGTTaGCACACCAGGCTTCTTAAC +
Preference number: 4 (lower is better)
Translates to: LCMSRAEVLSVAACEIHLRLHNG*HTRLLN
Trigger: GTTAAGAAGCCTGGTGTGGCAACCATTGTGCAGTCT...CAGGTGAATCTCACACGCAGCCACGCTGAGGACCTCTGCCCTAGACATGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp TGCAATGGCTCTAGGCATTGGGGTAAAAAGGCACATTACACAGAGTCCCTTGGAGTATTCGTGCCGGGCTaGCTCCTCCTCCCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: CNGSRHWGKKAHYTESLGVFVPG*LLLPGH
Trigger: GTGACCTGGGAGGAGGAGGCAGCCCGGCACGAATAC...TCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp CCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGTCTTCTTCCTGGTAAGGAGAGCCTaGATCTGGTGTTCAGACCCT +
Preference number: 4 (lower is better)
Translates to: PGNAGGSVLSSQTGLVFFLVRRA*IWCSDP
Trigger: AGGGTCTGAACACCAGATGCAGGCTCTCCTTACCAG...GAAGAAGACCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp TGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGCTCCTTCTGCAGTTCTaGCTCCTTCTGGTACGCCTT +
Preference number: 4 (lower is better)
Translates to: WCFLATLGEVYYQARQVWLLLQF*LLLVRL
Trigger: AAGGCGTACCAGAAGGAGCCAGAACTGCAGAAGGAG...CCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTTTGCCGTTCACATCCTaGAGGGCAGAGGTGGCTCTC +
Preference number: 4 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSLPFTS*RAEVAL
Trigger: GAGAGCCACCTCTGCCCTCCAGGATGTGAACGGCAA...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTTTGCCGTTCACATCCTaGAGGGCAGAGGTGGCTCTC +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPLPFTS*RAEVAL
Trigger: GAGAGCCACCTCTGCCCTCCAGGATGTGAACGGCAA...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTGACCAGCCAGGGCTCTaGCCAGACTGCACAATGGTT +
Preference number: 4 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSDQPGL*PDCTMV
Trigger: AACCATTGTGCAGTCTGGCCAGAGCCCTGGCTGGTC...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTCTGGGAGTGGCTGAGTGGTaGAGGGTGGAAGCACCTTCT +
Preference number: 4 (lower is better)
Translates to: VSQSSTSIDCQVPLSPSLGVAEW*RVEAPS
Trigger: AGAAGGTGCTTCCACCCTCCACCACTCAGCCACTCC...CAGACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTCTGCTCAGGACTCTCTaGCTTGGAAGAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESLLRTL*LGRGLI
Trigger: GATGAGGCCTCTTCCAAGTCAGAGAGTCCTGAGCAG...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp CAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCTCACAAGGAAGAAACTaGGACCCGAAGGTCCAGCTT +
Preference number: 4 (lower is better)
Translates to: QASSHLSHRAPPALTAKFSQGRN*DPKVQL
Trigger: AAGCTGGACCTTCGGGTCTCAGTTTCTTCCTTGTGA...GAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTAATGTGCACAGGATCTaGCCCAGCCACTGCATGACG +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPNVHRI*PSHCMT
Trigger: CGTCATGCAGTGGCTGGGTCAGATCCTGTGCACATT...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTCCTGGAAGGAGTGGCTaGGTGGTGGAGGGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLPGRSG*VVEGGS
Trigger: GCTTCCACCCTCCACCACTCAGCCACTCCTTCCAGG...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCCCTTCTCACTGGGAATaGTGGGGTGGTATAACTGAA +
Preference number: 4 (lower is better)
Translates to: PWCFLATLGEVYYQARQVPSHWE*WGGITE
Trigger: TTCAGTTATACCACCCCATCATTCCCAGTGAGAAGG...GACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp AAGGAAAAGGACACTGTTGGCTTGGACATGAGGGGTGGCACAGGACTGCTTTACGTGGGCGCTGGCATCTaGAGGTGTGTTCTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: KEKDTVGLDMRGGTGLLYVGAGI*RCVLQN
Trigger: ATTCTGGAGAACACACCTGCAGATGCCAGCGCCCAC...GTAAAGCAGTCCTGTGCCACCCCTCATGTCCAAGCCAACAGTGTCCTTTTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp CCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCAGACTGCACAATGGTTaGCACACCAGGCTTCTTAAC +
Preference number: 4 (lower is better)
Translates to: PWCFLATLGEVYYQARQVRLHNG*HTRLLN
Trigger: GTTAAGAAGCCTGGTGTGGCAACCATTGTGCAGTCT...GACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTGGAGGACCACAAATGTaGACAGGATCTGACCCAGCC +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPGGPQM*TGSDPA
Trigger: GGCTGGGTCAGATCCTGTGCACATTTGTGGTCCTCC...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGAACCGCGCCAGCGACTGTTGTTaGCTTTGGTATCCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: QPHTPTDPPSNSPLPWNRASDCC*LWYPCF
Trigger: AAAACAAGGATACCAAAGGCAACAACAGTCGCTGGC...GCGGTTCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp AGTGGCACTGCTGAGCCACCCACTGTGGCCTCCCACACTAGGCATTCTGTAAGGTCTGGCTCAGTCTGGTaGTCTTCTTGGAAAGAGTAT +
Preference number: 4 (lower is better)
Translates to: SGTAEPPTVASHTRHSVRSGSVW*SSWKEY
Trigger: ATACTCTTTCCAAGAAGACCACCAGACTGAGCCAGA...CCTTACAGAATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAGCAGTGCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp CAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCACTGCATGACGAGTTaGTTAAACTGTGGGAGCTCG +
Preference number: 4 (lower is better)
Translates to: QASSHLSHRAPPALTAKFHCMTS*LNCGSS
Trigger: CGAGCTCCCACAGTTTAACCAACTCGTCATGCAGTG...GAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp TTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGCGCCAGGCCAGTAGTCCTGGTGTTCAGACCCTaGAAGGAGTGGCTGAGTGGT +
Preference number: 4 (lower is better)
Translates to: FLPHPTTWLFSQSARPVVLVFRP*KEWLSG
Trigger: ACCACTCAGCCACTCCTTCCAGGGTCTGAACACCAG...GACTACTGGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCTTCCCCTTCTTGTCTTaGGCCTCTAGGATGGTCACA +
Preference number: 4 (lower is better)
Translates to: QASSHLSHRAPPALTAKFFPFLS*ASRMVT
Trigger: TGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAA...GAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGTCTTCTTCTTCCCCTTCTTGTCTTaGGCCTCTAGGATGGTCACA +
Preference number: 4 (lower is better)
Translates to: PGNAGGSVLSSQTGLVFFFPFLS*ASRMVT
Trigger: TGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAA...GAAGAAGACCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGAAAGAGTATGTGTGTTaGTGCGGGCCAGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: QQCGSVSRITLSSPTASWKEYVC*CGPAAP
Trigger: GGGAGCGGCTGGCCCGCATCAACACACATACTCTTT...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTCTGGAAGTCCGGCTCTaGGACGTGGTGATGAGGCAG +
Preference number: 4 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLLEVRL*DVVMRQ
Trigger: CTGCCTCATCACCACGTCTCAGAGCCGGACTTCCAG...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTTATACTGCCACCACCTaGCTCATGGTTGGGACAGTG +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPYTATT*LMVGTV
Trigger: CACTGTCCCAACCATGAGTCAGGTGGTGGCAGTATA...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp AGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGGTATTCGTGCCGGGCTaGCTCCTCCTCCCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: SLMTYILTTSHDLVIFPEVFVPG*LLLPGH
Trigger: GTGACCTGGGAGGAGGAGGCAGCCCGGCACGAATAC...CTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTCTGGTCTTCTTCAGAGATGCCCTGCCTGCGACTAACACAAGCAACATTCATCTCGGCGAGGTCTCTCTaGAGGACCACAAATGTGCAC +
Preference number: 4 (lower is better)
Translates to: VWSSSEMPCLRLTQATFISARSL*RTTNVH
Trigger: GTGCACATTTGTGGTCCTCCAGAGAGACCTCGCCGA...GATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGACCAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGAATGTTGCTTGACACCTaGTATAGCTTCTCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: AISLTHPLIHPQIPLFPGMLLDT*YSFSGP
Trigger: TGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACAT...TCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCAGACAGGTCTGGTCTTCTTCATGTTGCTTGACACCTaGTATAGCTTCTCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: PGNAGGSVLSSQTGLVFFMLLDT*YSFSGP
Trigger: TGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACAT...GAAGAAGACCAGACCTGTCTGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTAGAAGGGCCACGATTTaGCCCCGCAGCAGGGTCAGG +
Preference number: 4 (lower is better)
Translates to: RILSLMTYILTTSHDLVIRRATI*PRSRVR
Trigger: CCTGACCCTGCTGCGGGGCCAAATCGTGGCCCTTCT...AATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTTCATGTGTCCCTGTCTaGCCTCTGAGCTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPSCVPV*PLSSFS
Trigger: TGAGAAGGAGCTCAGAGGCCAGACAGGGACACATGA...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTTCATGTGTCCCTGTCTaGCCTCTGAGCTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSSCVPV*PLSSFS
Trigger: TGAGAAGGAGCTCAGAGGCCAGACAGGGACACATGA...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTGGGCTCTGGGGCTaGAAGCCAGGAGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLGGLWG*KPGVFM
Trigger: CATGAAGACTCCTGGCTTCCAGCCCCAGAGCCCACC...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp ACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGCGCCAGGCCAGGATGGTCACAGGCTaGCCTGCCTGTAGACTCAGT +
Preference number: 4 (lower is better)
Translates to: TYILTTSHDLVIFPERQARMVTG*PACRLS
Trigger: ACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCT...GGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTCCTCCAGATTACCCATaGAATCGACCACATTGTTTC +
Preference number: 4 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTPPDYP*NRPHCF
Trigger: GAAACAATGTGGTCGATTTCATGGGTAATCTGGAGG...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTAGTGAGCCGTGGTGTTTCCTGGCAACGCTGGGGGAAGTGTACTATCAAGCCATCTGGCTCAGTCTGGTaGTCTTCTTGGAAAGAGTAT +
Preference number: 4 (lower is better)
Translates to: VVSRGVSWQRWGKCTIKPSGSVW*SSWKEY
Trigger: ATACTCTTTCCAAGAAGACCACCAGACTGAGCCAGA...TGGCTTGATAGTACACTTCCCCCAGCGTTGCCAGGAAACACCACGGCTCACTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp TTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGCGCCAGGCCAGTAGTCGCATCTGGCTCAGTCTaGTGGTCTTCTTGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: FLPHPTTWLFSQSARPVVASGSV*WSSWKE
Trigger: CTCTTTCCAAGAAGACCACCAGACTGAGCCAGATGC...GACTACTGGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTCTGGTCTTCTTCAGAGATGCCCTGCCTGCGACTAACACAAGCAACATTCATCCACAGAGACACCCACTaGAATCTCTCCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: VWSSSEMPCLRLTQATFIHRDTH*NLSSRS
Trigger: TGACCTGGAGGAGAGATTCCAGTGGGTGTCTCTGTG...GATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGACCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTAGACCCTGGAAGGAGTaGCTGAGTGGTGGAGGGTGG +
Preference number: 4 (lower is better)
Translates to: RILSLMTYILTTSHDLVIRPWKE*LSGGGW
Trigger: CCACCCTCCACCACTCAGCCACTCCTTCCAGGGTCT...AATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTGTTCGTGGGTGCTTCTaGCCACAAAAGGGTATACTG +
Preference number: 4 (lower is better)
Translates to: LDHCNQPHTPTDPPSNSPVRGCF*PQKGIL
Trigger: CAGTATACCCTTTTGTGGCCAGAAGCACCCACGAAC...AGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp ACCACGAGTCTAGACCATTGCAATCAGCCTCACACACCCACTGATCCACCCTCATGTAGACTCAGTTCGTaGGTGCTTCTGGCCACAAAA +
Preference number: 4 (lower is better)
Translates to: TTSLDHCNQPHTPTDPPSCRLSS*VLLATK
Trigger: TTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACA...TGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGCAATGGTCTAGACTCGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGAGGATGGTCACAGGCTaGCCTGCCTGTAGACTCAGT +
Preference number: 4 (lower is better)
Translates to: QQCGSVSRITLSSPTASWRMVTG*PACRLS
Trigger: ACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCT...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 72 bp AATGGCTGCGCCATCCCGACGCCACTAACAGTCTTTTaGTTAGTGTCACGCTTCCTGGTTGACAAGGATCCT +
Preference number: 4 (lower is better)
Translates to: NGCAIPTPLTVF*LVSRFLVDKDP
Trigger: AGGATCCTTGTCAACCAGGAAGCGTGACACTAACAAAAAGACTGTTAGTGGCGTCGGGATGGCGCAGCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGCAGCAGAGCCATGGTaGTCTCTGCCCTTCGTAGCA +
Preference number: 4 (lower is better)
Translates to: QPHDIHSYHIPRLGYFPRAAEPW*SLPFVA
Trigger: TGCTACGAAGGGCAGAGAGCACCATGGCTCTGCTGC...TCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp CCTGCGACTAACACAAGCAACATTCATCCTTTTAAGTCCATAGGAATGGGGGTTGCCCCTCTGTCCGTTTaGTTCCACCAGGCTCCATTC +
Preference number: 4 (lower is better)
Translates to: PATNTSNIHPFKSIGMGVAPLSV*FHQAPF
Trigger: GAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGC...AACCCCCATTCCTATGGACTTAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp CAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGACGAAGGTCCAGCTTGTaGCCTGAGGGAGAAGGTTGC +
Preference number: 4 (lower is better)
Translates to: QPHDIHSYHIPRLGYFPRRRSSL*PEGEGC
Trigger: GCAACCTTCTCCCTCAGGCCACAAGCTGGACCTTCG...TCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
3UTR CAA 72 bp AGCCTCATGACATACATTCTTACCACATCCCACGACTaGGTTATTTTCCCAGAGCGCCAGGCCAGTAGTCAC +
Preference number: 4 (lower is better)
Translates to: SLMTYILTTSHD*VIFPERQASSH
Trigger: GTGACTACTGGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp GTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTCTGCCTCCAGATTACCCATaGAATCGACCACATTGTTTC +
Preference number: 4 (lower is better)
Translates to: VSQSSTSIDCQVPLSPSLPPDYP*NRPHCF
Trigger: GAAACAATGTGGTCGATTTCATGGGTAATCTGGAGG...CAGACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR TCA 90 bp CAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAAATGTGCACAGGATCTaGCCCAGCCACTGCATGACG +
Preference number: 4 (lower is better)
Translates to: QPHDIHSYHIPRLGYFPRNVHRI*PSHCMT
Trigger: CGTCATGCAGTGGCTGGGTCAGATCCTGTGCACATT...TCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GAACAGGCTGTTCTATTACAAACTGCTTCTAAAGCTTCCTGCTTAGATAGCCAGGGAGTGGCTGAGTGGTaGAGGGTGGAAGCACCTTCT +
Preference number: 4 (lower is better)
Translates to: EQAVLLQTASKASCLDSQGVAEW*RVEAPS
Trigger: AGAAGGTGCTTCCACCCTCCACCACTCAGCCACTCC...CTGGCTATCTAAGCAGGAAGCTTTAGAAGCAGTTTGTAATAGAACAGCCTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGGTTCGTGGGTGCTTCTaGCCACAAAAGGGTATACTG +
Preference number: 4 (lower is better)
Translates to: QQCGSVSRITLSSPTASWVRGCF*PQKGIL
Trigger: CAGTATACCCTTTTGTGGCCAGAAGCACCCACGAAC...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp CCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCTGTTGTAGGTGGCTTCTaGTGTCAGAGGCACAGAGTC +
Preference number: 4 (lower is better)
Translates to: PQPHDIHSYHIPRLGYFPVVGGF*CQRHRV
Trigger: GACTCTGTGCCTCTGACATCAGAAGCCACCTACAAC...AGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp CCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCTTATACTGCCACCACCTaGCTCATGGTTGGGACAGTG +
Preference number: 4 (lower is better)
Translates to: PQPHDIHSYHIPRLGYFPYTATT*LMVGTV
Trigger: CACTGTCCCAACCATGAGTCAGGTGGTGGCAGTATA...AGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR GCA 90 bp AGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGCTGGTAAGGAGAGCCTaGATCTGGTGTTCAGACCCT +
Preference number: 4 (lower is better)
Translates to: SLMTYILTTSHDLVIFPELVRRA*IWCSDP
Trigger: AGGGTCTGAACACCAGATGCAGGCTCTCCTTACCAG...CTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp TCTTCTTCAGAGATGCCCTGCCTGCGACTAACACAAGCAACATTCATCCTTTTAGACTCAGTTCGTGGGTaGTTCTGGCCACAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: SSSEMPCLRLTQATFILLDSVRG*FWPQKG
Trigger: ACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTC...TAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CCA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGCATCTGGCTCAGTCTaGTGGTCTTCTTGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLASGSV*WSSWKE
Trigger: CTCTTTCCAAGAAGACCACCAGACTGAGCCAGATGC...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR GCA 90 bp TGCAATGGCTCTAGGCATTGGGGTAAAAAGGCACATTACACAGAGTCCCTTGGAGCCAGCGACTGTTGTTaGCTTTGGTATCCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: CNGSRHWGKKAHYTESLGASDCC*LWYPCF
Trigger: AAAACAAGGATACCAAAGGCAACAACAGTCGCTGGC...TCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 72 bp GCCTGTCATCCTCGAACGGGGTCTTCTTTGAGGGGTTaGTTTCCAGATTTGAGAAATGACTTGCTCACTAAG +
Preference number: 4 (lower is better)
Translates to: ACHPRTGSSLRG*FPDLRNDLLTK
Trigger: CTTAGTGAGCAAGTCATTTCTCAAATCTGGAAACAAACCCCTCAAAGAAGACCCCGTTCGAGGATGACAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR TCA 90 bp GAACAGGCTGTTCTATTACAAACTGCTTCTAAAGCTTCCTGCTTAGATAGCCAGTCACAAGGAAGAAACTaGGACCCGAAGGTCCAGCTT +
Preference number: 4 (lower is better)
Translates to: EQAVLLQTASKASCLDSQSQGRN*DPKVQL
Trigger: AAGCTGGACCTTCGGGTCTCAGTTTCTTCCTTGTGA...CTGGCTATCTAAGCAGGAAGCTTTAGAAGCAGTTTGTAATAGAACAGCCTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CCA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTGTAGACTCAGTTCGTaGGTGCTTCTGGCCACAAAA +
Preference number: 4 (lower is better)
Translates to: RILSLMTYILTTSHDLVICRLSS*VLLATK
Trigger: TTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACA...AATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
3UTR CAA 72 bp AGCCTCATGACATACATTCTTACCACATCCCACGACTaGGTTATTTTCCTAGGTGGAAAAGTGCAGTTGTGT +
Preference number: 4 (lower is better)
Translates to: SLMTYILTTSHD*VIFLGGKVQLC
Trigger: ACACAACTGCACTTTTCCACCTAGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 72 bp GCTGTCTCTCAAGAGGGTCAATTCCAAATTTGTCGGTaGTATAGAGATCATAGTGGATCACCTTTTTCACTG +
Preference number: 4 (lower is better)
Translates to: AVSQEGQFQICR*YRDHSGSPFSL
Trigger: CAGTGAAAAAGGTGATCCACTATGATCTCTATACAACCGACAAATTTGGAATTGACCCTCTTGAGAGACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
3UTR CAA 72 bp TCCCGTGAGATTATATTGCCTAGTGATGTCATAACCTaGTTATTTTGCACACTCCATGATGTTCACACAAAA +
Preference number: 4 (lower is better)
Translates to: SREIILPSDVIT*LFCTLHDVHTK
Trigger: TTTTGTGTGAACATCATGGAGTGTGCAAAATAACAAGGTTATGACATCACTAGGCAATATAATCTCACGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS CCA 90 bp TGGTTAAACTGTGGGAGCTCGGCCACTAGTAAGGAGTTGAGCGCCTaGTATTCGTGCCGGGCTGCCTCCTCCTCCCAGGTCACGCTGCCC +
Preference number: 5 (lower is better)
Translates to: WLNCGSSATSKELSA*YSCRAASSSQVTLP
Trigger: GGGCAGCGTGACCTGGGAGGAGGAGGCAGCCCGGCACGAATACCAGGCGCTCAACTCCTTACTAGTGGCCGAGCTCCCACAGTTTAACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGTGGCACTGCTGAGCCACCCACTGTGGCCTCCCACACTAGGCATTCTGTAAGGTCCAGCCCCAGGGAGTaGGGCTTGGGGTCCTGGCTA +
Preference number: 5 (lower is better)
Translates to: SGTAEPPTVASHTRHSVRSSPRE*GLGSWL
Trigger: TAGCCAGGACCCCAAGCCCAACTCCCTGGGGCTGGA...CCTTACAGAATGCCTAGTGTGGGAGGCCACAGTGGGTGGCTCAGCAGTGCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp GGGGGAATGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCGAAAGAGTATGTGTGTaGATGCGGGCCAGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: GGMAPCGWDHLWAGSLGFERVCV*MRASRS
Trigger: GGAGCGGCTGGCCCGCATCAACACACATACTCTTTC...GAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCATTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS GCA 90 bp CCAGCTTGTGGCATGGCAGCTTCGATGATGCCCTGGATCTCCTTCTaGAGTTCTGGCTCCTTCTGGTACGCCTTGACCAGCAGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: PACGMAASMMPWISF*SSGSFWYALTSSRA
Trigger: GGCCCTGCTGCTGGTCAAGGCGTACCAGAAGGAGCCAGAACTGCAGAAGGAGATCCAGGGCATCATCGAAGCTGCCATGCCACAAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS GCA 90 bp GAGGGCAGAGGTGGCTCTCTGAAGGGCAGGGTGGGCGCTGGCATCTaGAGGTGTGTTCTCCAGAATTTTCTGCAGCAGGAGGGGGTACTT +
Preference number: 5 (lower is better)
Translates to: EGRGGSLKGRVGAGI*RCVLQNFLQQEGVL
Trigger: AAGTACCCCCTCCTGCTGCAGAAAATTCTGGAGAACACACCTGCAGATGCCAGCGCCCACCCTGCCCTTCAGAGAGCCACCTCTGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 90 bp GGAAGTCCGGCTCTGAGACGTGGTGATGAGGCAGCAGAGCCATGGTaGTCTCTGCCCTTCGTAGCACTTGATCGGCGAGGTCTCTCTGGA +
Preference number: 5 (lower is better)
Translates to: GSPALRRGDEAAEPW*SLPFVALDRRGLSG
Trigger: TCCAGAGAGACCTCGCCGATCAAGTGCTACGAAGGGCAGAGAGCACCATGGCTCTGCTGCCTCATCACCACGTCTCAGAGCCGGACTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp CCAGGCTCCATTCTGGGTTCCCCTTCTTGTCTTGGGCCTCTAGGATaGTCACAGGCTGGCCTGCCTGTAGACTCAGTTCGTGGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: PGSILGSPSCLGPLG*SQAGLPVDSVRGCF
Trigger: GAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCAGAGCGCCAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGAAAGAGTATGTGTGTaGATGCGGGCCAGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: PERQASSHLSHRAPPALTERVCV*MRASRS
Trigger: GGAGCGGCTGGCCCGCATCAACACACATACTCTTTC...AGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTGGCGCTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 90 bp GCATCTGGCTCAGTCTGGTGGTCTTCTTGGAAAGAGTATGTGTGTTaGTGCGGGCCAGCCGCTCCCGAAGGCTCAGCTGCTCCACTTTGG +
Preference number: 5 (lower is better)
Translates to: ASGSVWWSSWKEYVC*CGPAAPEGSAAPLW
Trigger: CCAAAGTGGAGCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACACATACTCTTTCCAAGAAGACCACCAGACTGAGCCAGATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 90 bp ACCAGGCTTCTTAACCGCTGCTTAAACTGCAGAAAGGCATGGAGCTaGAGGTCCCTCGCTAGGCTGCAGTACTGCTCCGCAGGTCCCCCA +
Preference number: 5 (lower is better)
Translates to: TRLLNRCLNCRKAWS*RSLARLQYCSAGPP
Trigger: TGGGGGACCTGCGGAGCAGTACTGCAGCCTAGCGAGGGACCTTCAGCTCCATGCCTTTCTGCAGTTTAAGCAGCGGTTAAGAAGCCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 90 bp CGATTTGGCCCCGCAGCAGGGTCAGGTCCAGAGTCCCAGTCCCGTTaGTGTTGCTTGACACCTGGTATAGCTTCTCAGGGCCATATCTGG +
Preference number: 5 (lower is better)
Translates to: RFGPAAGSGPESQSR*CCLTPGIASQGHIW
Trigger: CCAGATATGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACATCAACGGGACTGGGACTCTGGACCTGACCCTGCTGCGGGGCCAAATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp TGGCATGGCAGCTTCGATGATGCCCTGGATCTCCTTCTGCAGTTCTaGCTCCTTCTGGTACGCCTTGACCAGCAGCAGGGCCTGGTCATA +
Preference number: 5 (lower is better)
Translates to: WHGSFDDALDLLLQF*LLLVRLDQQQGLVI
Trigger: TATGACCAGGCCCTGCTGCTGGTCAAGGCGTACCAGAAGGAGCCAGAACTGCAGAAGGAGATCCAGGGCATCATCGAAGCTGCCATGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS CCA 90 bp CCGTTTGCTTCCACCAGGCTCCATTCTGGGTTCCCCTTCTTGTCTTaGGCCTCTAGGATGGTCACAGGCTGGCCTGCCTGTAGACTCAGT +
Preference number: 5 (lower is better)
Translates to: PFASTRLHSGFPFLS*ASRMVTGWPACRLS
Trigger: ACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CTGCAGCCTCCATGGCCTCAGAGGCAAACCCAGGCCACCTGTGTTCTCTGGTTCTCGAAGTCCAGGAGTTaGTCCAGGCGCTTCTTGATC +
Preference number: 5 (lower is better)
Translates to: LQPPWPQRQTQATCVLWFSKSRS*SRRFLI
Trigger: GATCAAGAAGCGCCTGGACAAACTCCTGGACTTCGA...GAACCAGAGAACACAGGTGGCCTGGGTTTGCCTCTGAGGCCATGGAGGCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp CCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACTCTGGGTTCCCCTTCTaGTCTTGGGCCTCTAGGATG +
Preference number: 5 (lower is better)
Translates to: PWNRLRVCTHSPDLCRDHSGFPF*SWASRM
Trigger: CATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGA...GTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp GGGGTCTTGCTCTTGCATCACACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGAGCCCCTCTGTCCGTTaGCTTCCACCAGGCTCCATT +
Preference number: 5 (lower is better)
Translates to: GVLLLHHTVGALTSPEEASPSVR*LPPGSI
Trigger: AATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGCT...CGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGTGTGATGCAAGAGCAAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp ACCACATCCCACGACTTGGTTATTTTCCCAGAGCGCCAGGCCAGTAGTCACCTGCCCAGGGAGTTGGGCTaGGGGTCCTGGCTAGAAAGT +
Preference number: 5 (lower is better)
Translates to: TTSHDLVIFPERQASSHLPRELG*GSWLES
Trigger: ACTTTCTAGCCAGGACCCCAAGCCCAACTCCCTGGG...CAGGTGACTACTGGCCTGGCGCTCTGGGAAAATAACCAAGTCGTGGGATGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS GCA 90 bp TTACCAATCAGGTGCGCTTGCTCCTCTTCCCTGCAGGCTGTCTCCTaGAGCCCTCGAAGGAACCTGCTGCTCACTTGGATGATGTCATCG +
Preference number: 5 (lower is better)
Translates to: LPIRCACSSSLQAVS*SPRRNLLLTWMMSS
Trigger: CGATGACATCATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAGGGAAGAGGAGCAAGCGCACCTGATTGGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS GCA 90 bp CTAGGATGGTCACAGGCTGGCCTGCCTGTAGACTCAGTTCGTGGGTaGTTCTGGCCACAAAAGGGTATACTGCCACCACCTGACTCATGG +
Preference number: 5 (lower is better)
Translates to: LGWSQAGLPVDSVRG*FWPQKGILPPPDSW
Trigger: CCATGAGTCAGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp CATCTGGTGTTCAGACCCTGGAAGGAGTGGCTGAGTGGTGGAGGGTaGAAGCACCTTCTCAAAGCTCTCCTGAAAGAGGCGGAGCTGACT +
Preference number: 5 (lower is better)
Translates to: HLVFRPWKEWLSGGG*KHLLKALLKEAELT
Trigger: AGTCAGCTCCGCCTCTTTCAGGAGAGCTTTGAGAAGGTGCTTCCACCCTCCACCACTCAGCCACTCCTTCCAGGGTCTGAACACCAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp TGGTCACAGGCTGGCCTGCCTGTAGACTCAGTTCGTGGGTGCTTCTaGCCACAAAAGGGTATACTGCCACCACCTGACTCATGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: WSQAGLPVDSVRGCF*PQKGILPPPDSWLG
Trigger: TCCCAACCATGAGTCAGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp TCTGGGTTCCCCTTCTTGTCTTGGGCCTCTAGGATGGTCACAGGCTaGCCTGCCTGTAGACTCAGTTCGTGGGTGCTTCTGGCCACAAAA +
Preference number: 5 (lower is better)
Translates to: SGFPFLSWASRMVTG*PACRLSSWVLLATK
Trigger: TTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACACCAATCAGGTGCGCTaGCTCCTCTTCCCTGCAGGC +
Preference number: 5 (lower is better)
Translates to: KPVKNIPPWPLHQLLLPDTNQVR*LLFPAG
Trigger: GCCTGCAGGGAAGAGGAGCAAGCGCACCTGATTGGT...GTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS TCA 90 bp AGGCTGTCTCCTGCAGCCCTCGAAGGAACCTGCTGCTCACTTGGATaGTGTCATCGATGTTGGAGAACAGGATGTCCAGATCGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: RLSPAALEGTCCSLG*CHRCWRTGCPDRLV
Trigger: CACCAGGCGATCTGGACATCCTGTTCTCCAACATCGATGACATCATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS GCA 90 bp GCAGGGTGGGCGCTGGCATCTGCAGGTGTGTTCTCCAGAATTTTCTaGAGCAGGAGGGGGTACTTGGTAATCCTCTGTAGAGGGATCACA +
Preference number: 5 (lower is better)
Translates to: AGWALASAGVFSRIF*SRRGYLVILCRGIT
Trigger: TGTGATCCCTCTACAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATTCTGGAGAACACACCTGCAGATGCCAGCGCCCACCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp CTGCAGGCTGTCTCCTGCAGCCCTCGAAGGAACCTGCTGCTCACTTaGATGATGTCATCGATGTTGGAGAACAGGATGTCCAGATCGCCT +
Preference number: 5 (lower is better)
Translates to: LQAVSCSPRRNLLLT*MMSSMLENRMSRSP
Trigger: AGGCGATCTGGACATCCTGTTCTCCAACATCGATGACATCATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS-3UTR CAA 90 bp CTTCCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACTCAGGACTCTCTGACTaGGAAGAGGCCTCATCTGCT +
Preference number: 5 (lower is better)
Translates to: LPWNRLRVCTHSPDLCRDSGLSD*EEASSA
Trigger: AGCAGATGAGGCCTCTTCCAAGTCAGAGAGTCCTGA...GTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp GGGGTCTTGCTCTTGCATCACACTGTTGGGGCTTTAACAAGCCCAGAGGAGGCGCCACTGCATGACGAGTaGGTTAAACTGTGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: GVLLLHHTVGALTSPEEAPLHDE*VKLWEL
Trigger: GAGCTCCCACAGTTTAACCAACTCGTCATGCAGTGG...CGCCTCCTCTGGGCTTGTTAAAGCCCCAACAGTGTGATGCAAGAGCAAGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp CTTCCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACACCAGCCAGCGACTGTaGTTGCCTTTGGTATCCTTG +
Preference number: 5 (lower is better)
Translates to: LPWNRLRVCTHSPDLCRDTSQRL*LPLVSL
Trigger: CAAGGATACCAAAGGCAACAACAGTCGCTGGCTGGT...GTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTCCCAGGGAGTTGGGCTaGGGGTCCTGGCTAGAAAGT +
Preference number: 5 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESPRELG*GSWLES
Trigger: ACTTTCTAGCCAGGACCCCAAGCCCAACTCCCTGGG...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS TCA 90 bp TGCCCTGGATCTCCTTCTGCAGTTCTGGCTCCTTCTGGTACGCCTTaGCCAGCAGCAGGGCCTGGTCATAGTTGGCACAGTAGACTTTAT +
Preference number: 5 (lower is better)
Translates to: CPGSPSAVLAPSGTP*PAAGPGHSWHSRLY
Trigger: ATAAAGTCTACTGTGCCAACTATGACCAGGCCCTGCTGCTGGTCAAGGCGTACCAGAAGGAGCCAGAACTGCAGAAGGAGATCCAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS GCA 90 bp AGAGTATGTGTGTTGATGCGGGCCAGCCGCTCCCGAAGGCTCAGCTaGTCCACTTTGGTATACTTTAAGGCCACTTCCTTGCGCATCTTG +
Preference number: 5 (lower is better)
Translates to: RVCVLMRASRSRRLS*STLVYFKATSLRIL
Trigger: CAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACACATACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 90 bp AGGGTCAGGTCCAGAGTCCCAGTCCCGTTGATGTTGCTTGACACCTaGTATAGCTTCTCAGGGCCATATCTGGTAAGGAGAGCCTGCATC +
Preference number: 5 (lower is better)
Translates to: RVRSRVPVPLMLLDT*YSFSGPYLVRRACI
Trigger: GATGCAGGCTCTCCTTACCAGATATGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACATCAACGGGACTGGGACTCTGGACCTGACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp TGCAATGGCTCTAGGCATTGGGGTAAAAAGGCACATTACACAGAGTCCCTTGGATCCTTCTGGTACGCCTaGACCAGCAGCAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: CNGSRHWGKKAHYTESLGSFWYA*TSSRAW
Trigger: CCAGGCCCTGCTGCTGGTCAAGGCGTACCAGAAGGA...TCCAAGGGACTCTGTGTAATGTGCCTTTTTACCCCAATGCCTAGAGCCATTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp GCAATCAGCCTCACACACCCACTGATCCACCCTCAAATTCCCCTCTTCCCTGGATCGAAGTCCAGGAGTTaGTCCAGGCGCTTCTTGATC +
Preference number: 5 (lower is better)
Translates to: AISLTHPLIHPQIPLFPGSKSRS*SRRFLI
Trigger: GATCAAGAAGCGCCTGGACAAACTCCTGGACTTCGA...TCCAGGGAAGAGGGGAATTTGAGGGTGGATCAGTGGGTGTGTGAGGCTGATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCTTTGTCTCCTAGTAGCCCCTCTGTCCGTTaGCTTCCACCAGGCTCCATT +
Preference number: 5 (lower is better)
Translates to: PVSQSSTSIDCQVPLSPSSPSVR*LPPGSI
Trigger: AATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGCT...ACTAGGAGACAAAGGAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 90 bp ACAGGATGTCCAGATCGCCTGGTGGCAGCTGTTGTAGGTGGCTTCTaGTGTCAGAGGCACAGAGTCGGAGCATGTGTAAGTAGGAGACTT +
Preference number: 5 (lower is better)
Translates to: TGCPDRLVAAVVGGF*CQRHRVGACVSRRL
Trigger: AAGTCTCCTACTTACACATGCTCCGACTCTGTGCCTCTGACATCAGAAGCCACCTACAACAGCTGCCACCAGGCGATCTGGACATCCTGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS GCA 90 bp ATTCCAAGAATAAGTTACCAATCAGGTGCGCTTGCTCCTCTTCCCTaGAGGCTGTCTCCTGCAGCCCTCGAAGGAACCTGCTGCTCACTT +
Preference number: 5 (lower is better)
Translates to: IPRISYQSGALAPLP*RLSPAALEGTCCSL
Trigger: AAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAGGGAAGAGGAGCAAGCGCACCTGATTGGTAACTTATTCTTGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS-3UTR CAA 90 bp GGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACACCCAGGTCATCAAATTCCTaGTCTTCTGTCCGGGATACA +
Preference number: 5 (lower is better)
Translates to: GTASEFVHTVQTCAETTPRSSNS*SSVRDT
Trigger: TGTATCCCGGACAGAAGACAAGGAATTTGATGACCT...GGGTGTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTTTCCCAGAGTCCAGCCCCAGGGAGTaGGGCTTGGGGTCCTGGCTA +
Preference number: 5 (lower is better)
Translates to: SLMTYILTTSHDLVIFPESSPRE*GLGSWL
Trigger: TAGCCAGGACCCCAAGCCCAACTCCCTGGGGCTGGA...CTCTGGGAAAATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCCTGGAACCGCCTCCGAGTTTGTACACACAGTCCAGACCTGTGCAGAGACCACATGAAATCGACCACATaGTTTCTGAGCTCCTTCACA +
Preference number: 5 (lower is better)
Translates to: PWNRLRVCTHSPDLCRDHMKSTT*FLSSFT
Trigger: TGTGAAGGAGCTCAGAAACAATGTGGTCGATTTCAT...GTGGTCTCTGCACAGGTCTGGACTGTGTGTACAAACTCGGAGGCGGTTCCAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGCATTGACTGCCAAGTTCCGCATCTTGTATTCGTaGATATTGCCGTTCACATCC +
Preference number: 5 (lower is better)
Translates to: QASSHLSHRAPPALTAKFRILYS*ILPFTS
Trigger: GGATGTGAACGGCAATATCAACGAATACAAGATGCG...GAACTTGGCAGTCAATGCTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp TTATTTTCCCAGAGCGCCAGGCCAGTAGTCACCTGTCTCACAGAGCTCCACCAGACTTCCTTGCGCATCTaGTATTCGTTGATATTGCCG +
Preference number: 5 (lower is better)
Translates to: LFSQSARPVVTCLTELHQTSLRI*YSLILP
Trigger: CGGCAATATCAACGAATACAAGATGCGCAAGGAAGT...CTGGTGGAGCTCTGTGAGACAGGTGACTACTGGCCTGGCGCTCTGGGAAAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACTTGCCTTTGGTATCCTaGTTTTGTAGAAGGGCCACG +
Preference number: 5 (lower is better)
Translates to: KPVKNIPPWPLHQLLLPDLPLVS*FCRRAT
Trigger: CGTGGCCCTTCTACAAAACAAGGATACCAAAGGCAA...GTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGTCTGGGTTCCCCTTCTaGTCTTGGGCCTCTAGGATG +
Preference number: 5 (lower is better)
Translates to: QQCGSVSRITLSSPTASWSGFPF*SWASRM
Trigger: CATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGA...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp TCTTCTTCAGAGATGCCCTGCCTGCGACTAACACAAGCAACATTCATCCTTTTAACCCGAAGGTCCAGCTaGTGGCCTGAGGGAGAAGGT +
Preference number: 5 (lower is better)
Translates to: SSSEMPCLRLTQATFILLTRRSS*WPEGEG
Trigger: ACCTTCTCCCTCAGGCCACAAGCTGGACCTTCGGGT...TAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGCATCTCTGAAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCTCAGAACCTAGGCCCATGGCTTCCCCTTGAGCAGGACTCTTCACAGTTCACTATGAAATCGACCACATaGTTTCTGAGCTCCTTCACA +
Preference number: 5 (lower is better)
Translates to: PQNLGPWLPLEQDSSQFTMKSTT*FLSSFT
Trigger: TGTGAAGGAGCTCAGAAACAATGTGGTCGATTTCAT...AGTGAACTGTGAAGAGTCCTGCTCAAGGGGAAGCCATGGGCCTAGGTTCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAAACTTCCTTGCGCATCTaGTATTCGTTGATATTGCCG +
Preference number: 5 (lower is better)
Translates to: SSCFLTCLSSSPDFLGDETSLRI*YSLILP
Trigger: CGGCAATATCAACGAATACAAGATGCGCAAGGAAGT...TTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp CCTCCGACTCCTGGGAGCTCTGTTCCATTCTTAGGCAATTCTCCTTGTGAGTCTTTTAAGGCCACTTCCTaGCGCATCTTGTATTCGTTG +
Preference number: 5 (lower is better)
Translates to: PPTPGSSVPFLGNSPCESFKATS*RILYSL
Trigger: CAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAA...AGACTCACAAGGAGAATTGCCTAAGAATGGAACAGAGCTCCCAGGAGTCGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTCCACTGCATGACGAGTaGGTTAAACTGTGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLPLHDE*VKLWEL
Trigger: GAGCTCCCACAGTTTAACCAACTCGTCATGCAGTGG...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp GTTGACAAGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTACCAGCCAGCGACTGTaGTTGCCTTTGGTATCCTTG +
Preference number: 5 (lower is better)
Translates to: VDKDPQPHDIHSYHIPRLTSQRL*LPLVSL
Trigger: CAAGGATACCAAAGGCAACAACAGTCGCTGGCTGGT...AAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCTTGTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTCCACCTGACTCATGGTaGGGACAGTGGGAACAGAGA +
Preference number: 5 (lower is better)
Translates to: RILSLMTYILTTSHDLVIPPDSW*GQWEQR
Trigger: TCTCTGTTCCCACTGTCCCAACCATGAGTCAGGTGG...AATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 90 bp CTTTGGTATACTTTAAGGCCACTTCCTTGCGCATCTTGTATTCGTTaGTATTGCCGTTCACATCCTGGAGGGCAGAGGTGGCTCTCTGAA +
Preference number: 5 (lower is better)
Translates to: LWYTLRPLPCASCIR*YCRSHPGGQRWLSE
Trigger: TTCAGAGAGCCACCTCTGCCCTCCAGGATGTGAACGGCAATATCAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGCAGCAAGAAAGAAAAGATGAGTAGTGAGCCGTGGTGTTTCCTGGCAACGCTGAGTCTGGTGGTCTTCTaGGAAAGAGTATGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: SSKKEKMSSEPWCFLATLSLVVF*ERVCVL
Trigger: CAACACACATACTCTTTCCAAGAAGACCACCAGACT...CAGCGTTGCCAGGAAACACCACGGCTCACTACTCATCTTTTCTTTCTTGCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CAGCAATGTGGAAGTGTAAGCAGAATAACCCTTTCCTCCCCAACTGCTTCTTGGAGGTCATCAAATTCCTaGTCTTCTGTCCGGGATACA +
Preference number: 5 (lower is better)
Translates to: QQCGSVSRITLSSPTASWRSSNS*SSVRDT
Trigger: TGTATCCCGGACAGAAGACAAGGAATTTGATGACCT...CCAAGAAGCAGTTGGGGAGGAAAGGGTTATTCTGCTTACACTTCCACATTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS-3UTR CAA 90 bp GCCCTGCCTGCGACTAACACAAGCAACATTCATCCTTTTAAGTCCATAGGAATGTTTAAGGCCACTTCCTaGCGCATCTTGTATTCGTTG +
Preference number: 5 (lower is better)
Translates to: ALPATNTSNIHPFKSIGMFKATS*RILYSL
Trigger: CAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAA...CATTCCTATGGACTTAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGGCAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCTGCGACTAACACAAGCAACATTCATCCTTTTAAGTCCATAGGAATGGGGGTTTTGCCTTTGGTATCCTaGTTTTGTAGAAGGGCCACG +
Preference number: 5 (lower is better)
Translates to: PATNTSNIHPFKSIGMGVLPLVS*FCRRAT
Trigger: CGTGGCCCTTCTACAAAACAAGGATACCAAAGGCAA...AACCCCCATTCCTATGGACTTAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp CCTGCGACTAACACAAGCAACATTCATCCTTTTAAGTCCATAGGAATGGGGGTTCGCATCTTGTATTCGTaGATATTGCCGTTCACATCC +
Preference number: 5 (lower is better)
Translates to: PATNTSNIHPFKSIGMGVRILYS*ILPFTS
Trigger: GGATGTGAACGGCAATATCAACGAATACAAGATGCG...AACCCCCATTCCTATGGACTTAAAAGGATGAATGTTGCTTGTGTTAGTCGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236608.2
CDS-3UTR CAA 90 bp AGGATCCTCAGCCTCATGACATACATTCTTACCACATCCCACGACTTGGTTATTAGTCTGGTGGTCTTCTaGGAAAGAGTATGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: RILSLMTYILTTSHDLVISLVVF*ERVCVL
Trigger: CAACACACATACTCTTTCCAAGAAGACCACCAGACT...AATAACCAAGTCGTGGGATGTGGTAAGAATGTATGTCATGAGGCTGAGGATCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp TCGGCCACTAGTAAGGAGTTGAGCGCCTGGTATTCGTaGCGGGCTGCCTCCTCCTCCCAGGTCACGCTGCCC +
Preference number: 6 (lower is better)
Translates to: SATSKELSAWYS*RAASSSQVTLP
Trigger: GGGCAGCGTGACCTGGGAGGAGGAGGCAGCCCGGCACGAATACCAGGCGCTCAACTCCTTACTAGTGGCCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp TGTGGGAGCTCGGCCACTAGTAAGGAGTTGAGCGCCTaGTATTCGTGCCGGGCTGCCTCCTCCTCCCAGGTC +
Preference number: 6 (lower is better)
Translates to: CGSSATSKELSA*YSCRAASSSQV
Trigger: GACCTGGGAGGAGGAGGCAGCCCGGCACGAATACCAGGCGCTCAACTCCTTACTAGTGGCCGAGCTCCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp AGGTGCGCTTGCTCCTCTTCCCTGCAGGCTGTCTCCTaGAGCCCTCGAAGGAACCTGCTGCTCACTTGGATG +
Preference number: 6 (lower is better)
Translates to: RCACSSSLQAVS*SPRRNLLLTWM
Trigger: CATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAGGGAAGAGGAGCAAGCGCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS CCA 72 bp GGTTGGGACAGTGGGAACAGAGAGCTGGGTGGGCTCTaGGGCTGGAAGCCAGGAGTCTTCATGTGTCCCTGT +
Preference number: 6 (lower is better)
Translates to: GWDSGNRELGGL*GWKPGVFMCPC
Trigger: ACAGGGACACATGAAGACTCCTGGCTTCCAGCCCCAGAGCCCACCCAGCTCTCTGTTCCCACTGTCCCAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 72 bp CCCGCAGCAGGGTCAGGTCCAGAGTCCCAGTCCCGTTaGTGTTGCTTGACACCTGGTATAGCTTCTCAGGGC +
Preference number: 6 (lower is better)
Translates to: PAAGSGPESQSR*CCLTPGIASQG
Trigger: GCCCTGAGAAGCTATACCAGGTGTCAAGCAACATCAACGGGACTGGGACTCTGGACCTGACCCTGCTGCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp GGTGGCTCTCTGAAGGGCAGGGTGGGCGCTGGCATCTaGAGGTGTGTTCTCCAGAATTTTCTGCAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: GGSLKGRVGAGI*RCVLQNFLQQE
Trigger: CTCCTGCTGCAGAAAATTCTGGAGAACACACCTGCAGATGCCAGCGCCCACCCTGCCCTTCAGAGAGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp GCTCTGAGACGTGGTGATGAGGCAGCAGAGCCATGGTaGTCTCTGCCCTTCGTAGCACTTGATCGGCGAGGT +
Preference number: 6 (lower is better)
Translates to: ALRRGDEAAEPW*SLPFVALDRRG
Trigger: ACCTCGCCGATCAAGTGCTACGAAGGGCAGAGAGCACCATGGCTCTGCTGCCTCATCACCACGTCTCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp GGGCAGAGGTGGCTCTCTGAAGGGCAGGGTGGGCGCTaGCATCTGCAGGTGTGTTCTCCAGAATTTTCTGCA +
Preference number: 6 (lower is better)
Translates to: GQRWLSEGQGGR*HLQVCSPEFSA
Trigger: TGCAGAAAATTCTGGAGAACACACCTGCAGATGCCAGCGCCCACCCTGCCCTTCAGAGAGCCACCTCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp TCCACCAGGCTCCATTCTGGGTTCCCCTTCTTGTCTTaGGCCTCTAGGATGGTCACAGGCTGGCCTGCCTGT +
Preference number: 6 (lower is better)
Translates to: STRLHSGFPFLS*ASRMVTGWPAC
Trigger: ACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp TGGTTAAACTGTGGGAGCTCGGCCACTAGTAAGGAGTaGAGCGCCTGGTATTCGTGCCGGGCTGCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: WLNCGSSATSKE*SAWYSCRAASS
Trigger: GGAGGAGGCAGCCCGGCACGAATACCAGGCGCTCAACTCCTTACTAGTGGCCGAGCTCCCACAGTTTAACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp CTCTGTCCGTTTGCTTCCACCAGGCTCCATTCTGGGTTCCCCTTCTaGTCTTGGGCCTCTAGGATGGTCACAGGCTGGCCTGCCTGTAGA +
Preference number: 6 (lower is better)
Translates to: LCPFASTRLHSGFPF*SWASRMVTGWPACR
Trigger: TCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp GGCATGGCAGCTTCGATGATGCCCTGGATCTCCTTCTaGAGTTCTGGCTCCTTCTGGTACGCCTTGACCAGC +
Preference number: 6 (lower is better)
Translates to: GMAASMMPWISF*SSGSFWYALTS
Trigger: GCTGGTCAAGGCGTACCAGAAGGAGCCAGAACTGCAGAAGGAGATCCAGGGCATCATCGAAGCTGCCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS GCA 72 bp GGACCAGCCAGGGCTCTGGCCAGACTGCACAATGGTTaGCACACCAGGCTTCTTAACCGCTGCTTAAACTGC +
Preference number: 6 (lower is better)
Translates to: GPARALARLHNG*HTRLLNRCLNC
Trigger: GCAGTTTAAGCAGCGGTTAAGAAGCCTGGTGTGGCAACCATTGTGCAGTCTGGCCAGAGCCCTGGCTGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp CCCTTCTTGTCTTGGGCCTCTAGGATGGTCACAGGCTaGCCTGCCTGTAGACTCAGTTCGTGGGTGCTTCTG +
Preference number: 6 (lower is better)
Translates to: PFLSWASRMVTG*PACRLSSWVLL
Trigger: CAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp CCCAGGGAGTTGGGCTTGGGGTCCTGGCTAGAAAGTTaGAAGGCACATAGCCCCTCTGTCCGTTTGCTTCCA +
Preference number: 6 (lower is better)
Translates to: PRELGLGSWLES*KAHSPSVRLLP
Trigger: TGGAAGCAAACGGACAGAGGGGCTATGTGCCTTCCAACTTTCTAGCCAGGACCCCAAGCCCAACTCCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp CTCAGTCTGGTGGTCTTCTTGGAAAGAGTATGTGTGTaGATGCGGGCCAGCCGCTCCCGAAGGCTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: LSLVVFLERVCV*MRASRSRRLSC
Trigger: GCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACACATACTCTTTCCAAGAAGACCACCAGACTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp CCTGCAGGCTGTCTCCTGCAGCCCTCGAAGGAACCTGCTGCTCACTaGGATGATGTCATCGATGTTGGAGAACAGGATGTCCAGATCGCC +
Preference number: 6 (lower is better)
Translates to: PAGCLLQPSKEPAAH*DDVIDVGEQDVQIA
Trigger: GGCGATCTGGACATCCTGTTCTCCAACATCGATGACATCATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACAGCCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS CAA 90 bp AGCATCTGGCTCAGTCTGGTGGTCTTCTTGGAAAGAGTATGTGTGTaGATGCGGGCCAGCCGCTCCCGAAGGCTCAGCTGCTCCACTTTG +
Preference number: 6 (lower is better)
Translates to: SIWLSLVVFLERVCV*MRASRSRRLSCSTL
Trigger: CAAAGTGGAGCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACACATACTCTTTCCAAGAAGACCACCAGACTGAGCCAGATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp ACGATTTGGCCCCGCAGCAGGGTCAGGTCCAGAGTCCCAGTCCCGTaGATGTTGCTTGACACCTGGTATAGCTTCTCAGGGCCATATCTG +
Preference number: 6 (lower is better)
Translates to: TIWPRSRVRSRVPVP*MLLDTWYSFSGPYL
Trigger: CAGATATGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACATCAACGGGACTGGGACTCTGGACCTGACCCTGCTGCGGGGCCAAATCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp GGGTCCTGGCTAGAAAGTTGGAAGGCACATAGCCCCTCTGTCCGTTaGCTTCCACCAGGCTCCATTCTGGGTTCCCCTTCTTGTCTTGGG +
Preference number: 6 (lower is better)
Translates to: GSWLESWKAHSPSVR*LPPGSILGSPSCLG
Trigger: CCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGCTATGTGCCTTCCAACTTTCTAGCCAGGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 72 bp TCAGTCTGGTGGTCTTCTTGGAAAGAGTATGTGTGTTaGTGCGGGCCAGCCGCTCCCGAAGGCTCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: SVWWSSWKEYVC*CGPAAPEGSAA
Trigger: AGCAGCTGAGCCTTCGGGAGCGGCTGGCCCGCATCAACACACATACTCTTTCCAAGAAGACCACCAGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 72 bp AGCAGAGCCATGGTGCTCTCTGCCCTTCGTAGCACTTaGTCGGCGAGGTCTCTCTGGAGGACCACAAATGTG +
Preference number: 6 (lower is better)
Translates to: SRAMVLSALRST*SARSLWRTTNV
Trigger: CACATTTGTGGTCCTCCAGAGAGACCTCGCCGATCAAGTGCTACGAAGGGCAGAGAGCACCATGGCTCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp CCTTCTCAAAGCTCTCCTGAAAGAGGCGGAGCTGACTaGTGCTCTGGCCTAGTGTGTGCTCCAGCAGCTTCT +
Preference number: 6 (lower is better)
Translates to: PSQSSPERGGAD*CSGLVCAPAAS
Trigger: AGAAGCTGCTGGAGCACACACTAGGCCAGAGCAGCAGTCAGCTCCGCCTCTTTCAGGAGAGCTTTGAGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp TCACAGGCTGGCCTGCCTGTAGACTCAGTTCGTGGGTaGTTCTGGCCACAAAAGGGTATACTGCCACCACCT +
Preference number: 6 (lower is better)
Translates to: SQAGLPVDSVRG*FWPQKGILPPP
Trigger: AGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGCCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp AGGATGTCCAGATCGCCTGGTGGCAGCTGTTGTAGGTaGCTTCTGATGTCAGAGGCACAGAGTCGGAGCATG +
Preference number: 6 (lower is better)
Translates to: RMSRSPGGSCCR*LLMSEAQSRSM
Trigger: CATGCTCCGACTCTGTGCCTCTGACATCAGAAGCCACCTACAACAGCTGCCACCAGGCGATCTGGACATCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS CCA 72 bp CCTTTGGTATCCTTGTTTTGTAGAAGGGCCACGATTTaGCCCCGCAGCAGGGTCAGGTCCAGAGTCCCAGTC +
Preference number: 6 (lower is better)
Translates to: PLVSLFCRRATI*PRSRVRSRVPV
Trigger: GACTGGGACTCTGGACCTGACCCTGCTGCGGGGCCAAATCGTGGCCCTTCTACAAAACAAGGATACCAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp GCTGGCCTGCCTGTAGACTCAGTTCGTGGGTGCTTCTaGCCACAAAAGGGTATACTGCCACCACCTGACTCA +
Preference number: 6 (lower is better)
Translates to: AGLPVDSVRGCF*PQKGILPPPDS
Trigger: TGAGTCAGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCACCCACGAACTGAGTCTACAGGCAGGCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp CCACAAAAGGGTATACTGCCACCACCTGACTCATGGTaGGGACAGTGGGAACAGAGAGCTGGGTGGGCTCTG +
Preference number: 6 (lower is better)
Translates to: PQKGILPPPDSW*GQWEQRAGWAL
Trigger: CAGAGCCCACCCAGCTCTCTGTTCCCACTGTCCCAACCATGAGTCAGGTGGTGGCAGTATACCCTTTTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp TTTGCTTCCACCAGGCTCCATTCTGGGTTCCCCTTCTaGTCTTGGGCCTCTAGGATGGTCACAGGCTGGCCT +
Preference number: 6 (lower is better)
Translates to: FASTRLHSGFPF*SWASRMVTGWP
Trigger: AGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 72 bp CTTAACCGCTGCTTAAACTGCAGAAAGGCATGGAGCTaGAGGTCCCTCGCTAGGCTGCAGTACTGCTCCGCA +
Preference number: 6 (lower is better)
Translates to: LNRCLNCRKAWS*RSLARLQYCSA
Trigger: TGCGGAGCAGTACTGCAGCCTAGCGAGGGACCTTCAGCTCCATGCCTTTCTGCAGTTTAAGCAGCGGTTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS TCA 72 bp GTGCTTCTGGCCACAAAAGGGTATACTGCCACCACCTaGCTCATGGTTGGGACAGTGGGAACAGAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: VLLATKGYTATT*LMVGTVGTESW
Trigger: CCAGCTCTCTGTTCCCACTGTCCCAACCATGAGTCAGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp CAGTTCGTGGGTGCTTCTGGCCACAAAAGGGTATACTaGCACCACCTGACTCATGGTTGGGACAGTGGGAAC +
Preference number: 6 (lower is better)
Translates to: QFVGASGHKRVY*HHLTHGWDSGN
Trigger: GTTCCCACTGTCCCAACCATGAGTCAGGTGGTGGCAGTATACCCTTTTGTGGCCAGAAGCACCCACGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp ATTCTGGGTTCCCCTTCTTGTCTTGGGCCTCTAGGATaGTCACAGGCTGGCCTGCCTGTAGACTCAGTTCGT +
Preference number: 6 (lower is better)
Translates to: ILGSPSCLGPLG*SQAGLPVDSVR
Trigger: ACGAACTGAGTCTACAGGCAGGCCAGCCTGTGACCATCCTAGAGGCCCAAGACAAGAAGGGGAACCCAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp CGGTGTCCCCCTGTGTCTACCAGCCAGCGACTGTTGTaGCCTTTGGTATCCTTGTTTTGTAGAAGGGCCACG +
Preference number: 6 (lower is better)
Translates to: RCPPVSTSQRLL*PLVSLFCRRAT
Trigger: CGTGGCCCTTCTACAAAACAAGGATACCAAAGGCAACAACAGTCGCTGGCTGGTAGACACAGGGGGACACCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp GGTGTCCCCCTGTGTCTACCAGCCAGCGACTGTTGTTaGCTTTGGTATCCTTGTTTTGTAGAAGGGCCACGA +
Preference number: 6 (lower is better)
Translates to: GVPLCLPASDCC*LWYPCFVEGPR
Trigger: TCGTGGCCCTTCTACAAAACAAGGATACCAAAGGCAACAACAGTCGCTGGCTGGTAGACACAGGGGGACACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CCA 72 bp CACAAGGAAGAAACTGAGACCCGAAGGTCCAGCTTGTaGCATGGCAGCTTCGATGATGCCCTGGATCTCCTT +
Preference number: 6 (lower is better)
Translates to: HKEETETRRSSL*HGSFDDALDLL
Trigger: AAGGAGATCCAGGGCATCATCGAAGCTGCCATGCCACAAGCTGGACCTTCGGGTCTCAGTTTCTTCCTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS CAA 72 bp GATCACAAGGAAGAAACTGAGACCCGAAGGTCCAGCTaGTGGCATGGCAGCTTCGATGATGCCCTGGATCTC +
Preference number: 6 (lower is better)
Translates to: DHKEETETRRSS*WHGSFDDALDL
Trigger: GAGATCCAGGGCATCATCGAAGCTGCCATGCCACAAGCTGGACCTTCGGGTCTCAGTTTCTTCCTTGTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171629.3
CDS CAA 72 bp CTAGAAAGTTGGAAGGCACATAGCCCCTCTGTCCGTTaGCTTCCACCAGGCTCCATTCTGGGTTCCCCTTCT +
Preference number: 6 (lower is better)
Translates to: LESWKAHSPSVR*LPPGSILGSPS
Trigger: AGAAGGGGAACCCAGAATGGAGCCTGGTGGAAGCAAACGGACAGAGGGGCTATGTGCCTTCCAACTTTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS GCA 72 bp TGGAATTCCAAGAATAAGTTACCAATCAGGTGCGCTTaGTCCTCTTCCCTGCAGGCTGTCTCCTGCAGCCCT +
Preference number: 6 (lower is better)
Translates to: WNSKNKLPIRCA*SSSLQAVSCSP
Trigger: AGGGCTGCAGGAGACAGCCTGCAGGGAAGAGGAGCAAGCGCACCTGATTGGTAACTTATTCTTGGAATTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS GCA 72 bp GCGCTGGCATCTGCAGGTGTGTTCTCCAGAATTTTCTaGAGCAGGAGGGGGTACTTGGTAATCCTCTGTAGA +
Preference number: 6 (lower is better)
Translates to: ALASAGVFSRIF*SRRGYLVILCR
Trigger: TCTACAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATTCTGGAGAACACACCTGCAGATGCCAGCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp TGTCTCCTGCAGCCCTCGAAGGAACCTGCTGCTCACTaGGATGATGTCATCGATGTTGGAGAACAGGATGTC +
Preference number: 6 (lower is better)
Translates to: CLLQPSKEPAAH*DDVIDVGEQDV
Trigger: GACATCCTGTTCTCCAACATCGATGACATCATCCAAGTGAGCAGCAGGTTCCTTCGAGGGCTGCAGGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000237557.2
CDS CCA 72 bp TCCAGAGTCCCAGTCCCGTTGATGTTGCTTGACACCTaGTATAGCTTCTCAGGGCCATATCTGGTAAGGAGA +
Preference number: 6 (lower is better)
Translates to: SRVPVPLMLLDT*YSFSGPYLVRR
Trigger: TCTCCTTACCAGATATGGCCCTGAGAAGCTATACCAGGTGTCAAGCAACATCAACGGGACTGGGACTCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp TCTGCAGGTGTGTTCTCCAGAATTTTCTGCAGCAGGAGGGGGTACTaGGTAATCCTCTGTAGAGGGATCACAAGGAAGAAACTGAGACCC +
Preference number: 6 (lower is better)
Translates to: SAGVFSRIFCSRRGY*VILCRGITRKKLRP
Trigger: GGGTCTCAGTTTCTTCCTTGTGATCCCTCTACAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATTCTGGAGAACACACCTGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp AGCTGCTCCACTTTGGTATACTTTAAGGCCACTTCCTTGCGCATCTaGTATTCGTTGATATTGCCGTTCACATCCTGGAGGGCAGAGGTG +
Preference number: 6 (lower is better)
Translates to: SCSTLVYFKATSLRI*YSLILPFTSWRAEV
Trigger: CACCTCTGCCCTCCAGGATGTGAACGGCAATATCAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 90 bp CGAAGGCTCAGCTGCTCCACTTTGGTATACTTTAAGGCCACTTCCTaGCGCATCTTGTATTCGTTGATATTGCCGTTCACATCCTGGAGG +
Preference number: 6 (lower is better)
Translates to: RRLSCSTLVYFKATS*RILYSLILPFTSWR
Trigger: CCTCCAGGATGTGAACGGCAATATCAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGCAGCTGAGCCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp GTGTTCTCCAGAATTTTCTGCAGCAGGAGGGGGTACTaGGTAATCCTCTGTAGAGGGATCACAAGGAAGAAA +
Preference number: 6 (lower is better)
Translates to: VFSRIFCSRRGY*VILCRGITRKK
Trigger: TTTCTTCCTTGTGATCCCTCTACAGAGGATTACCAAGTACCCCCTCCTGCTGCAGAAAATTCTGGAGAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp ACTTTGGTATACTTTAAGGCCACTTCCTTGCGCATCTaGTATTCGTTGATATTGCCGTTCACATCCTGGAGG +
Preference number: 6 (lower is better)
Translates to: TLVYFKATSLRI*YSLILPFTSWR
Trigger: CCTCCAGGATGTGAACGGCAATATCAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2
CDS CAA 72 bp AGCTGCTCCACTTTGGTATACTTTAAGGCCACTTCCTaGCGCATCTTGTATTCGTTGATATTGCCGTTCACA +
Preference number: 6 (lower is better)
Translates to: SCSTLVYFKATS*RILYSLILPFT
Trigger: TGTGAACGGCAATATCAACGAATACAAGATGCGCAAGGAAGTGGCCTTAAAGTATACCAAAGTGGAGCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000171629.3
ENSMUST00000236608.2