RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGEF10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071176

Ensembl transcript IDs: ENSMUST00000084207.12, ENSMUST00000110800.9, ENSMUST00000161162.8, ENSMUST00000163062.2

Found 478 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TATCCTGGACTGTGGTCCAGTGACCCCACAGCCAGGGCGCTCCCCTaGTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGG +
Preference number: 1 (lower is better)
Translates to: YPGLWSSDPTARALP*FPGTAGLRCAMGGR
Trigger: CCTTCCTCCCATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTGGGGTCACTGGACCACAGTCCAGGATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 90 bp CCGGTGGTGTGGATGCAGCCTCTGTCAGCTGGCCCTGCATCCGGCTaGGAGTTGTCCTTGATTGCCACCTTATGCCAGGCAGCAGCCTCC +
Preference number: 1 (lower is better)
Translates to: PVVWMQPLSAGPASG*ELSLIATLCQAAAS
Trigger: GGAGGCTGCTGCCTGGCATAAGGTGGCAATCAAGGACAACTCTCAGCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 90 bp CCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTGGCCCTaGATCCGGCTGAGAGTTGTCCTTGATTGCCACCTTATGCCAGGC +
Preference number: 1 (lower is better)
Translates to: PVGPGGVDAASVSWP*IRLRVVLDCHLMPG
Trigger: GCCTGGCATAAGGTGGCAATCAAGGACAACTCTCAGCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 90 bp AGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTaGGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTT +
Preference number: 1 (lower is better)
Translates to: SQGAPLLPWHSWAPL*DGRKAGEQSDHRIF
Trigger: AAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTaGGCCGGCACATGCCCCACGCAGACATTAATGTCACTTAGTATG +
Preference number: 1 (lower is better)
Translates to: VHRRPETHLAPSLHD*AGTCPTQTLMSLSM
Trigger: CATACTAAGTGACATTAATGTCTGCGTGGGGCATGTGCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 90 bp AGATGGGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTaGATGATGGGGCAGACTGTAGCATTATCCTGGACTGTGGTCCAG +
Preference number: 1 (lower is better)
Translates to: RWDWSPHSQLTLCIR*MMGQTVALSWTVVQ
Trigger: CTGGACCACAGTCCAGGATAATGCTACAGTCTGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCCCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 90 bp AGGCAGGAGAGCAGAGTGACCACAGAATATTTCTTTTCCAAACTCTaGTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCT +
Preference number: 1 (lower is better)
Translates to: RQESRVTTEYFFSKL*FQLVPVVWMQPLSA
Trigger: AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGAAAAGAAATATTCTGTGGTCACTCTGCTCTCCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 90 bp GTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGCTaGCTGGACTGGGGTGTGTTACCTGGCTTTCTAAATTGTTACAAT +
Preference number: 1 (lower is better)
Translates to: VYFGKPWSLLPKRAS*LDWGVLPGFLNCYN
Trigger: ATTGTAACAATTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 90 bp AAGTATGATTTGGCGTGGAAGCTGGAGTTCAATGTTGACAGGTACTaGACATTTTGGCTTCAAGTAAAGATTATGTGTGAAATGCTACAG +
Preference number: 1 (lower is better)
Translates to: KYDLAWKLEFNVDRY*TFWLQVKIMCEMLQ
Trigger: CTGTAGCATTTCACACATAATCTTTACTTGAAGCCAAAATGTTCAGTACCTGTCAACATTGAACTCCAGCTTCCACGCCAAATCATACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTaGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATA +
Preference number: 2 (lower is better)
Translates to: HSQGAPLLPWHSWAP*CDGRKAGEQSDHRI
Trigger: TATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGGCTCCGTTGTGCGATaGGAGGAAGGCAGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGGSVVR*EEGRRA
Trigger: TGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATGGACTGTGGTCCAGTaGCCCCACAGCCAGGGCGCT +
Preference number: 2 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAWTVVQ*PHSQGA
Trigger: AGCGCCCTGGCTGTGGGGTCACTGGACCACAGTCCA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTCCCGGTGGTGTGGATaGAGCCTCTGTCAGCTGGCC +
Preference number: 2 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQSRWCG*SLCQLA
Trigger: GGCCAGCTGACAGAGGCTGCATCCACACCACCGGGA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGCTCCCCTGCTTCCCTaGCACAGCTGGGCTCCGTTG +
Preference number: 2 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFAPLLP*HSWAPL
Trigger: CAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATCCCGGTGGTGTGGATaGAGCCTCTGTCAGCTGGCC +
Preference number: 2 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGASRWCG*SLCQLA
Trigger: GGCCAGCTGACAGAGGCTGCATCCACACCACCGGGA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCAGCTGGGCTCCGTTGTaGGATGGGAGGAAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFSWAPL*DGRKAG
Trigger: TCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATTCTTTTCCAAACTCTaGTTCCAGTTGGTCCCGGTG +
Preference number: 2 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTFFSKL*FQLVPV
Trigger: CACCGGGACCAACTGGAAGCAGAGTTTGGAAAAGAA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGTCAGCTCTCTGAGATaGGACTGGAGCCCACACAGC +
Preference number: 2 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFVSSLR*DWSPHS
Trigger: GCTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGAC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCCCTGTCAGCTCTCTaGGATGGGACTGGAGCCCAC +
Preference number: 2 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSLSAL*DGTGAH
Trigger: GTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTAGAGTTGTCCTTGATTaGCACCTTATGCCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSARVVLD*HLMPGS
Trigger: GCTGCCTGGCATAAGGTGGCAATCAAGGACAACTCT...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCATTATCCTGGACTGTaGTCCAGTGACCCCACAGCC +
Preference number: 2 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFHYPGL*SSDPTA
Trigger: GGCTGTGGGGTCACTGGACCACAGTCCAGGATAATG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGTCAGCTCTCTGAGATaGGACTGGAGCCCACACAGC +
Preference number: 2 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSVSSLR*DWSPHS
Trigger: GCTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGAC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGCTCCCCTGCTTCCCTaGCACAGCTGGGCTCCGTTG +
Preference number: 2 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLAPLLP*HSWAPL
Trigger: CAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCTCTGAGATGGGACTaGAGCCCACACAGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSLRWD*SPHSQL
Trigger: GAGCTGGCTGTGTGGGCTCCAGTCCCATCTCAGAGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCACAACAGTCTACTTTaGAAAGCCTTGGTCACTCCT +
Preference number: 2 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGHNSLL*KALVTP
Trigger: AGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGCTGGAGTTCAATGTTaGCAGGTACTGAACATTTTG +
Preference number: 2 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGAGVQC*QVLNIL
Trigger: CAAAATGTTCAGTACCTGTCAACATTGAACTCCAGC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCCCGGTGGTGTGGATaGAGCCTCTGTCAGCTGGCC +
Preference number: 2 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSRWCG*SLCQLA
Trigger: GGCCAGCTGACAGAGGCTGCATCCACACCACCGGGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCCCTGTCAGCTCTCTaGGATGGGACTGGAGCCCAC +
Preference number: 2 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSLSAL*DGTGAH
Trigger: GTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGGCTCCGTTGTGCGATaGGAGGAAGGCAGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQGSVVR*EEGRRA
Trigger: TGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGGCAGGAGAGCAGAGTaGCCACAGAATATTTCTTTT +
Preference number: 2 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFGRRAE*PQNISF
Trigger: AAAAGAAATATTCTGTGGTCACTCTGCTCTCCTGCC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTTTCTTTTCCAAACTCTaGTTCCAGTTGGTCCCGGTG +
Preference number: 2 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSFFSKL*FQLVPV
Trigger: CACCGGGACCAACTGGAAGCAGAGTTTGGAAAAGAA...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCTCTGAGATGGGACTaGAGCCCACACAGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSLRWD*SPHSQL
Trigger: GAGCTGGCTGTGTGGGCTCCAGTCCCATCTCAGAGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR TCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGGCAGGAGAGCAGAGTaGCCACAGAATATTTCTTTT +
Preference number: 2 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSGRRAE*PQNISF
Trigger: AAAAGAAATATTCTGTGGTCACTCTGCTCTCCTGCC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATTCTTTTCCAAACTCTaGTTCCAGTTGGTCCCGGTG +
Preference number: 2 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKFFSKL*FQLVPV
Trigger: CACCGGGACCAACTGGAAGCAGAGTTTGGAAAAGAA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTAAGGCAAGTATGATTTaGCGTGGAAGCTGGAGTTCA +
Preference number: 2 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSKASMI*RGSWSS
Trigger: TGAACTCCAGCTTCCACGCCAAATCATACTTGCCTT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR GCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAAGAGTTGTCCTTGATTaGCACCTTATGCCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQRVVLD*HLMPGS
Trigger: GCTGCCTGGCATAAGGTGGCAATCAAGGACAACTCT...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 72 bp CTGTGGTCCAGTGACCCCACAGCCAGGGCGCTCCCCTaGTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATG +
Preference number: 3 (lower is better)
Translates to: LWSSDPTARALP*FPGTAGLRCAM
Trigger: CATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTGGGGTCACTGGACCACAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTaGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAG +
Preference number: 3 (lower is better)
Translates to: HSQGAPLLPWHS*APLCDGRKAGE
Trigger: CTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 72 bp CCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATaGAGCCTCTGTCAGCTGGCCCTGCATCCGGCTGAG +
Preference number: 3 (lower is better)
Translates to: PNSASSWSRWCG*SLCQLALHPAE
Trigger: CTCAGCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR GCA 72 bp CCCGGTGGTGTGGATGCAGCCTCTGTCAGCTGGCCCTaGATCCGGCTGAGAGTTGTCCTTGATTGCCACCTT +
Preference number: 3 (lower is better)
Translates to: PGGVDAASVSWP*IRLRVVLDCHL
Trigger: AAGGTGGCAATCAAGGACAACTCTCAGCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp GTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTaGCCCTGCATCCGGCTGAGAGTTGTCCTTGATTGC +
Preference number: 3 (lower is better)
Translates to: VGPGGVDAASVS*PCIRLRVVLDC
Trigger: GCAATCAAGGACAACTCTCAGCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGGACCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 72 bp TGTCAGCTGGCCCTGCATCCGGCTGAGAGTTGTCCTTaGTTGCCACCTTATGCCAGGCAGCAGCCTCCTGAC +
Preference number: 3 (lower is better)
Translates to: CQLALHPAESCP*LPPYARQQPPD
Trigger: GTCAGGAGGCTGCTGCCTGGCATAAGGTGGCAATCAAGGACAACTCTCAGCCGGATGCAGGGCCAGCTGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp TTTTCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTaGATGCAGCCTCTGTCAGCTGGCCCTGCATCCGGC +
Preference number: 3 (lower is better)
Translates to: FSKLCFQLVPVV*MQPLSAGPASG
Trigger: GCCGGATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CAA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACACAGCTGGGCTCCGTaGTGCGATGGGAGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAHSWAP*CDGRKA
Trigger: TGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGTG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp ATTTCTTTTCCAAACTCTGCTTCCAGTTGGTCCCGGTaGTGTGGATGCAGCCTCTGTCAGCTGGCCCTGCAT +
Preference number: 3 (lower is better)
Translates to: ISFPNSASSWSR*CGCSLCQLALH
Trigger: ATGCAGGGCCAGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGAAAAGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp CATGGACCACTCAGAAGGAGTGTCCAACTGTGTGGATaGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGA +
Preference number: 3 (lower is better)
Translates to: HGPLRRSVQLCG*LSDSRCTEDQR
Trigger: TCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTTGGACACTCCTTCTGAGTGGTCCATG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 72 bp ACTCAGAAGGAGTGTCCAACTGTGTGGATGGCTCTCTaGCAGCAGGTGCACAGAAGACCAGAGACACATCTA +
Preference number: 3 (lower is better)
Translates to: TQKECPTVWMAL*QQVHRRPETHL
Trigger: TAGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTTGGACACTCCTTCTGAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR TCA 72 bp GGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGCTaGCTGGACTGGGGTGTGTTACCTGGCTTTCTAAAT +
Preference number: 3 (lower is better)
Translates to: GKPWSLLPKRAS*LDWGVLPGFLN
Trigger: ATTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR-3UTR CAA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTAGCTGGAGTTCAATGTaGACAGGTACTGAACATTTT +
Preference number: 3 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSSWSSM*TGTEHF
Trigger: AAAATGTTCAGTACCTGTCAACATTGAACTCCAGCT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
3UTR CCA 72 bp TTTGTTAAAGGGCACAGTACACACAACAGTCTACTTTaGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAG +
Preference number: 3 (lower is better)
Translates to: FVKGHSTHNSLL*KALVTPSKKGK
Trigger: CTTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCTGTGCACCCGCCGGTaGCCCTGGCCCCCACATACC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLCTRR*PWPPHT
Trigger: GGTATGTGGGGGCCAGGGCCACCGGCGGGTGCACAG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGCCAGGCTCTCAGGTaGGTGTGCAGCGTGGTGCCG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDGQALR*VCSVVP
Trigger: CGGCACCACGCTGCACACTCACCTGAGAGCCTGGCC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCTGGCCATGAACACCTaGCCTCCCGAGGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLAMNT*PPEAAH
Trigger: GTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCCTGAGAAGGCTGCCTaGCCTTCCTGTGCACCCGCC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDPEKAA*PSCAPA
Trigger: GGCGGGTGCACAGGAAGGCCAGGCAGCCTTCTCAGG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTCCGTCAGCGCCATCTaGAGGGGCAGCCTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDSVSAI*RGSLSG
Trigger: TCCTGACAGGCTGCCCCTTCAGATGGCGCTGACGGA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGCAGGCAGCAGCAATaGCAGGTTGGAGGGGACAGC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDGRQQQ*QVGGDS
Trigger: GCTGTCCCCTCCAACCTGCCATTGCTGCTGCCTGCC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
3UTR CAA 72 bp GGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTaGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGAC +
Preference number: 4 (lower is better)
Translates to: GAPLLPWHSWAP*CDGRKAGEQSD
Trigger: GTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCTCAGAACCGGAACGTaGGCTGTCCCTGGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLRTGT*AVPGSV
Trigger: GACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGGCCAGGCTCTCAGGTaGGTGTGCAGCGTGGTGCCG +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTGQALR*VCSVVP
Trigger: CGGCACCACGCTGCACACTCACCTGAGAGCCTGGCC...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGCACGTGTTCTCGTCTaGACCTCCTGCTTCAGCACC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDARVLV*TSCFST
Trigger: GGTGCTGAAGCAGGAGGTGCAGACGAGAACACGTGC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTGCCTGGCCTTCCTGTaGACCCGCCGGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGCLAFL*TRRWPW
Trigger: CCAGGGCCACCGGCGGGTGCACAGGAAGGCCAGGCA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATAGGGCACTGCCTTCTTaGCTGCCTTGCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDRALPS*LPCSLL
Trigger: CAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCT...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGCAGACGAGCAGGCTaGTCACAGATAGACGCTGGT +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDGRRAG*SQIDAG
Trigger: ACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCTCGCCCTGTCACTTTaGGGATACCCTGAAGCCGAG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLALSL*GYPEAE
Trigger: CTCGGCTTCAGGGTATCCCCAAAGTGACAGGGCGAG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCACCCGCCGGTGGCCCTaGCCCCCACATACCACCAGC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGTRRWP*PPHTTS
Trigger: GCTGGTGGTATGTGGGGGCCAGGGCCACCGGCGGGT...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGGCCAGGCTCTCAGGTaGGTGTGCAGCGTGGTGCCG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGGQALR*VCSVVP
Trigger: CGGCACCACGCTGCACACTCACCTGAGAGCCTGGCC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCTGCCCTCCCGAGGCTaGCCACAGTGCACCCTCCAC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLPSRG*PQCTLH
Trigger: GTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACTGAAGCCGAGGGACTaGCAGGGCCACCACGACACC +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTLKPRD*QGHHDT
Trigger: GGTGTCGTGGTGGCCCTGCCAGTCCCTCGGCTTCAG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTCTCCACGCTGGCCATaGACACCTGCCCTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGSPRWP*TPALPR
Trigger: CCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAGA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGGCTGGTACCGACCATaGGCAAGCCGTGGCAGACGA +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTGWYRP*ASRGRR
Trigger: TCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCC...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTTGAAACGCCGTGGCTaGGACGATGAACTTAACGGG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLKRRG*DDELNG
Trigger: CCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATAAGCATCCAGCACCATaGACTTGGAGAACGAGGCCA +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDKHPAP*TWRTRP
Trigger: TGGCCTCGTTCTCCAAGTCCATGGTGCTGGATGCTT...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCTGGTACAGCTGCCCTaGCCCCATGTAAACTTTGTG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDLVQLP*PHVNFV
Trigger: CACAAAGTTTACATGGGGCCAGGGCAGCTGTACCAG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCAGAACCATCCCATATaGTTCTCCTCCTCAAGGGCC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDQNHPI*FSSSRA
Trigger: GGCCCTTGAGGAGGAGAACCATATGGGATGGTTCTG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACTGTGGTCTGCTCCTTaGGGAGGCACTGGGGTCCCT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTLWSAP*GGTGVP
Trigger: AGGGACCCCAGTGCCTCCCCAAGGAGCAGACCACAG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCTGCCCTCCCGAGGCTaGCCACAGTGCACCCTCCAC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQLPSRG*PQCTLH
Trigger: GTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTGCCTGGCCTTCCTGTaGACCCGCCGGTGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFCLAFL*TRRWPW
Trigger: CCAGGGCCACCGGCGGGTGCACAGGAAGGCCAGGCA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTGTGTGGCTTCGCGTTaGCCACCACGGCCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGCVASR*PPRPGS
Trigger: AGAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCCCGACGTCCAATCATaGGCTACAGACTGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDPDVQS*ATDWFK
Trigger: CTTAAACCAGTCTGTAGCCCATGATTGGACGTCGGG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGTGTGTCTCCTTCTTaGCTAGGTTGCCATCGTCAT +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDGVSPS*LGCHRH
Trigger: ATGACGATGGCAACCTAGCCAAGAAGGAGACACACC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAACCCGCCGGTGGCCCTaGCCCCCACATACCACCAGC +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGATRRWP*PPHTTS
Trigger: GCTGGTGGTATGTGGGGGCCAGGGCCACCGGCGGGT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTCCAATCTTGAACTCTaGCTGCTTGGCCACCATCAC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDSNLEL*LLGHHH
Trigger: GTGATGGTGGCCAAGCAGCCAGAGTTCAAGATTGGA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGACGGCTGGTCTTCCTaGAGCGGCGTGATGTCGATG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGDGWSS*SGVMSM
Trigger: CATCGACATCACGCCGCTGCAGGAAGACCAGCCGTC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTGCCAGCTTGGCCATCTaGAGGCTGCTGACCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAASLAI*RLLTQD
Trigger: GTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTGGC...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTCGAGGCTGCCCACAGTaGACCCTCCACCAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSARGCPQ*TLHQEK
Trigger: CTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCG...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTGGCAGGCAGCAGCAATaGCAGGTTGGAGGGGACAGC +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAGRQQQ*QVGGDS
Trigger: GCTGTCCCCTCCAACCTGCCATTGCTGCTGCCTGCC...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTTGTGTGGCTTCGCGTTaGCCACCACGGCCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSACVASR*PPRPGS
Trigger: AGAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACA...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTTCAATCTTGAACTCTaGCTGCTTGGCCACCATCAC +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDFNLEL*LLGHHH
Trigger: GTGATGGTGGCCAAGCAGCCAGAGTTCAAGATTGAA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCAGATGGTGGGCACATaGGGTGCTCTCGAGGCTGTG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGQMVGT*GALEAV
Trigger: CACAGCCTCGAGAGCACCCCATGTGCCCACCATCTG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCTGAAGCCGAGGGACTaGCAGGGCCACCACGACACC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQLKPRD*QGHHDT
Trigger: GGTGTCGTGGTGGCCCTGCCAGTCCCTCGGCTTCAG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTACCCGCCGGTGGCCCTaGCCCCCACATACCACCAGC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSTRRWP*PPHTTS
Trigger: GCTGGTGGTATGTGGGGGCCAGGGCCACCGGCGGGT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCTCACAACCTGCTGCTaGGACAAGCCCTCGGGCATT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLTTCC*DKPSGI
Trigger: AATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTCTCCACGCTGGCCATaGACACCTGCCCTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFSPRWP*TPALPR
Trigger: CCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAGA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGACAGATCATTCTTTTaGGTTGGCAATCCTAGGGAG +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDDRSFF*VGNPRE
Trigger: CTCCCTAGGATTGCCAACTCAAAAGAATGATCTGTC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGCCAGCTTGGCCATCTaGAGGCTGCTGACCCAGGAC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQASLAI*RLLTQD
Trigger: GTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTGGC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCTGGCCATGAACACCTaGCCTCCCGAGGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFLAMNT*PPEAAH
Trigger: GTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTCAATGTTGACATCCTaGAGGTGCTTCAAGGTCTCT +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDSMLTS*RCFKVS
Trigger: AGAGACCTTGAAGCACCTGCAGGATGTCAACATTGA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACCCAGCAGGGGGATCTaGCACACCATCACTGAAGAA +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTPSRGI*HTITEE
Trigger: TTCTTCAGTGATGGTGTGGCAGATCCCCCTGCTGGG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGCACAGAGTAACCACTaGGCACACGCAGCCCCACGC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQAQSNH*AHAAPR
Trigger: GCGTGGGGCTGCGTGTGCCCAGTGGTTACTCTGTGC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATGCGCAGGAAGGACCTaGGAATTCCGTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTCAGRT*EFRSCP
Trigger: AGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAATCCATCTGGAGCCTTaGTGTAGCTGGCTACGGACC +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTIHLEP*CSWLRT
Trigger: GGTCCGTAGCCAGCTACACCAAGGCTCCAGATGGAT...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGGCAGACGAGCAGGCTaGTCACAGATAGACGCTGGT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGGRRAG*SQIDAG
Trigger: ACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCTGAAGCCGAGGGACTaGCAGGGCCACCACGACACC +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFLKPRD*QGHHDT
Trigger: GGTGTCGTGGTGGCCCTGCCAGTCCCTCGGCTTCAG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTGTGCACCCGCCGGTaGCCCTGGCCCCCACATACC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLCTRR*PWPPHT
Trigger: GGTATGTGGGGGCCAGGGCCACCGGCGGGTGCACAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCCTGAGAAGGCTGCCTaGCCTTCCTGTGCACCCGCC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFPEKAA*PSCAPA
Trigger: GGCGGGTGCACAGGAAGGCCAGGCAGCCTTCTCAGG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACCTGAGAAGGCTGCCTaGCCTTCCTGTGCACCCGCC +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAPEKAA*PSCAPA
Trigger: GGCGGGTGCACAGGAAGGCCAGGCAGCCTTCTCAGG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTCCGTCAGCGCCATCTaGAGGGGCAGCCTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFSVSAI*RGSLSG
Trigger: TCCTGACAGGCTGCCCCTTCAGATGGCGCTGACGGA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGGGTGGACCCCGAGGTaGAGGCAATCCAGATGCCAA +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQGWTPR*RQSRCQ
Trigger: TTGGCATCTGGATTGCCTTCACCTCGGGGTCCACCC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGAAACCAGGTCCTCCTaGGAAGGCTGCCTGGCCTTC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQETRSS*EGCLAF
Trigger: GAAGGCCAGGCAGCCTTCTCAGGAGGACCTGGTTTC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCCTTCTTGGCTGCCTTaGTCACTGCTGTGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGPSWLP*SLLCGR
Trigger: CCTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATGGATTTTCCATCCATaGTGTGTTGGCAGGGTCGGC +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTWIFHP*CVGRVG
Trigger: GCCGACCCTGCCAACACAGCATGGATGGAAAATCCA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTAGGGCACTGCCTTCTTaGCTGCCTTGCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSARALPS*LPCSLL
Trigger: CAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCT...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCACTCCACCCGTACTCTaGGGAGCTGTTTCCACCTTC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGTPPVL*GAVSTF
Trigger: GAAGGTGGAAACAGCTCCCCAGAGTACGGGTGGAGT...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACGCATCATAAGGCTGTaGAGTGTGACTCGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTRIIRL*SVTRSG
Trigger: TCCAGACCGAGTCACACTCCACAGCCTTATGATGCG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATGTGTGGCTTCGCGTTaGCCACCACGGCCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGACVASR*PPRPGS
Trigger: AGAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTGTGCCCAGGCAGATaGTGGGCACATGGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLCPGR*WAHGVL
Trigger: GAGCACCCCATGTGCCCACCATCTGCCTGGGCACAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGACCATGAGCAAGCCGTaGCAGACGAGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQTMSKP*QTSRLV
Trigger: GACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTTCCGTCAGCGCCATCTaGAGGGGCAGCCTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSSVSAI*RGSLSG
Trigger: TCCTGACAGGCTGCCCCTTCAGATGGCGCTGACGGA...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGGCTGGTACCGACCATaGGCAAGCCGTGGCAGACGA +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSGWYRP*ASRGRR
Trigger: TCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTTGAAACGCCGTGGCTaGGACGATGAACTTAACGGG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLKRRG*DDELNG
Trigger: CCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTTGGGGTCTTCATCCTaGAGCTCAGAACCGGAACGT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLGSSS*SSEPER
Trigger: ACGTTCCGGTTCTGAGCTTCAGGATGAAGACCCCAA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTCCAGTTCCATTTCCTaGAGGGCACGTGTTCTCGTC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGSSSIS*RARVLV
Trigger: GACGAGAACACGTGCCCTGCAGGAAATGGAACTGGA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAAGCCTCACCTTCTTaGAGCCCTGACTGCTTTTGT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTEASPS*SPDCFC
Trigger: ACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTTC...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTGGCCATGAACACCTaGCCTCCCGAGGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLAMNT*PPEAAH
Trigger: GTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGTAAATTGCTTCCTCTaGATTTTCCATCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDVNCFL*IFHPCC
Trigger: ACAGCATGGATGGAAAATCCAGAGGAAGCAATTTAC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCCTGCTGAATCTCCATaGCTCCCACCGTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQPAESP*LPPYWP
Trigger: TGGCCAGTACGGTGGGAGCCATGGAGATTCAGCAGG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCGCATCATAAGGCTGTaGAGTGTGACTCGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGRIIRL*SVTRSG
Trigger: TCCAGACCGAGTCACACTCCACAGCCTTATGATGCG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATGGCTCATCACGGCATaGCTTTCATGTGAGTTCCGT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTWLITA*LSCEFR
Trigger: ACGGAACTCACATGAAAGCCATGCCGTGATGAGCCA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCAGGTTCTGCAGATCCTaGTACAGCTGCCCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFRFCRS*YSCPGP
Trigger: GGGGCCAGGGCAGCTGTACCAGGATCTGCAGAACCT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACCCGACGTCCAATCATaGGCTACAGACTGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTPDVQS*ATDWFK
Trigger: CTTAAACCAGTCTGTAGCCCATGATTGGACGTCGGG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTTGGGGTTGGAACCTTaGAAGGAGACAATGGCGACC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLGLEP*KETMAT
Trigger: GGTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACAGATGGTGGGCACATaGGGTGCTCTCGAGGCTGTG +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAQMVGT*GALEAV
Trigger: CACAGCCTCGAGAGCACCCCATGTGCCCACCATCTG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTTTCAAGGTCTCTGTGTaGAAGAGGCGGAGGGTGGAC +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAFKVSV*KRRRVD
Trigger: GTCCACCCTCCGCCTCTTCCACACAGAGACCTTGAA...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCACCATGAGCAAGCCGTaGCAGACGAGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFTMSKP*QTSRLV
Trigger: GACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTCTGCTTTGCCTGCTaGATCTCCATGGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLCFAC*ISMAPT
Trigger: GGTGGGAGCCATGGAGATTCAGCAGGCAAAGCAGAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCTCACAACCTGCTGCTaGGACAAGCCCTCGGGCATT +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFLTTCC*DKPSGI
Trigger: AATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTCACAACCTGCTGCTaGGACAAGCCCTCGGGCATT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLTTCC*DKPSGI
Trigger: AATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTTTGGGGTCTTCATCCTaGAGCTCAGAACCGGAACGT +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSALGSSS*SSEPER
Trigger: ACGTTCCGGTTCTGAGCTTCAGGATGAAGACCCCAA...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCACATACCACCAGCGCTaGACTGGCTCTTGCTCGCCT +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFTYHQR*TGSCSP
Trigger: AGGCGAGCAAGAGCCAGTTCAGCGCTGGTGGTATGT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCACATACCACCAGCGCTaGACTGGCTCTTGCTCGCCT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFTYHQR*TGSCSP
Trigger: AGGCGAGCAAGAGCCAGTTCAGCGCTGGTGGTATGT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATCCCACAGTTTCTGCTaGTTCTTCCTCCTCTACAGA +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTSHSFC*FFLLYR
Trigger: TCTGTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCACTGCCTTCTTGGCTaGCTTGCTCACTGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQHCLLG*LAHCCV
Trigger: CACACAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGAAGCCTCACCTTCTTaGAGCCCTGACTGCTTTTGT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGEASPS*SPDCFC
Trigger: ACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTTC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACGAGGCTGCCCACAGTaGACCCTCCACCAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKRGCPQ*TLHQEK
Trigger: CTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTCTGTCCACAGATCTGTaGTCTAGGGAACTGGAGCCA +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSALSTDL*SRELEP
Trigger: TGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAG...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTAACTGTGGGAACCTCTaGATGGGCCGCATCATAAGG +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSANCGNL*MGRIIR
Trigger: CCTTATGATGCGGCCCATCCAGAGGTTCCCACAGTT...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTAGGTTCTGCAGATCCTaGTACAGCTGCCCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSRFCRS*YSCPGP
Trigger: GGGGCCAGGGCAGCTGTACCAGGATCTGCAGAACCT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTCAGAACCATCCCATATaGTTCTCCTCCTCAAGGGCC +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAQNHPI*FSSSRA
Trigger: GGCCCTTGAGGAGGAGAACCATATGGGATGGTTCTG...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGGTGTGTCTCCTTCTTaGCTAGGTTGCCATCGTCAT +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGGVSPS*LGCHRH
Trigger: ATGACGATGGCAACCTAGCCAAGAAGGAGACACACC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTACCATGAGCAAGCCGTaGCAGACGAGCAGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSTMSKP*QTSRLV
Trigger: GACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCTCGCCCTGTCACTTTaGGGATACCCTGAAGCCGAG +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFLALSL*GYPEAE
Trigger: CTCGGCTTCAGGGTATCCCCAAAGTGACAGGGCGAG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCAACGTGGGCTGTCCCTaGCTCTGTCCTTGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGNVGCP*LCPCFE
Trigger: TTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTT...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTCTCAGAACCGGAACGTaGGCTGTCCCTGGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSLRTGT*AVPGSV
Trigger: GACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAG...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTGTGGTCTGCTCCTTaGGGAGGCACTGGGGTCCCT +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLWSAP*GGTGVP
Trigger: AGGGACCCCAGTGCCTCCCCAAGGAGCAGACCACAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAACTGTGCACCCGCCGGTaGCCCTGGCCCCCACATACC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLCTRR*PWPPHT
Trigger: GGTATGTGGGGGCCAGGGCCACCGGCGGGTGCACAG...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACACTTTTGCTATTTGTTTaGTTTCGCATCGCTGGTCGG +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTLLLFV*FRIAGR
Trigger: CCGACCAGCGATGCGAAATCAAACAAATAGCAAAAG...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAACGGGCTGTGGAGGGTaGGGCTGGTTGACTTTCATT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGATGCGG*GWLTFI
Trigger: AATGAAAGTCAACCAGCCTCACCCTCCACAGCCCGT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCATACACAGGATGCGTaGTTCCACATTGAAGCACTC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGHTQDA*FHIEAL
Trigger: GAGTGCTTCAATGTGGAATCACGCATCCTGTGTATG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAGGGTGGACCCCGAGGTaGAGGCAATCCAGATGCCAA +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKGWTPR*RQSRCQ
Trigger: TTGGCATCTGGATTGCCTTCACCTCGGGGTCCACCC...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGACAGATCATTCTTTTaGGTTGGCAATCCTAGGGAG +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTDRSFF*VGNPRE
Trigger: CTCCCTAGGATTGCCAACTCAAAAGAATGATCTGTC...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAGAAACCAGGTCCTCCTaGGAAGGCTGCCTGGCCTTC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKETRSS*EGCLAF
Trigger: GAAGGCCAGGCAGCCTTCTCAGGAGGACCTGGTTTC...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACCTTCTTGGCTGCCTTaGTCACTGCTGTGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAPSWLP*SLLCGR
Trigger: CCTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATTCTTCAGCATGTCCTaGAGTAGGAGGATGAACTGT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTFFSMS*SRRMNC
Trigger: ACAGTTCATCCTCCTACTGCAGGACATGCTGAAGAA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGATCTTGAACTCTGGCTaGTTGGCCACCATCACAGGC +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQILNSG*LATITG
Trigger: GCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAAGAT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTGAAGCCTCACCTTCTTaGAGCCCTGACTGCTTTTGT +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAEASPS*SPDCFC
Trigger: ACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTTC...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAACTGCCCTCCCGAGGCTaGCCACAGTGCACCCTCCAC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLPSRG*PQCTLH
Trigger: GTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAG...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATCAATGTTGACATCCTaGAGGTGCTTCAAGGTCTCT +
Preference number: 4 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTSMLTS*RCFKVS
Trigger: AGAGACCTTGAAGCACCTGCAGGATGTCAACATTGA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCAAGGACCTTCCTCGCTaGAGAGCAAGTCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFKDLPR*RASPWG
Trigger: ACCCCAAGGACTTGCTCTGCAGCGAGGAAGGTCCTT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAAAGGACCTTCCTCGCTaGAGAGCAAGTCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAKDLPR*RASPWG
Trigger: ACCCCAAGGACTTGCTCTGCAGCGAGGAAGGTCCTT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCCCAGCAGGGGGATCTaGCACACCATCACTGAAGAA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFPSRGI*HTITEE
Trigger: TTCTTCAGTGATGGTGTGGCAGATCCCCCTGCTGGG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTTTGCTTTTTATGACTaGTGCGCAGGAAGGACCTGG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGFAFYD*CAGRTW
Trigger: CCAGGTCCTTCCTGCGCAGCAGTCATAAAAAGCAAA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATGCGCAGGAAGGACCTaGGAATTCCGTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGACAGRT*EFRSCP
Trigger: AGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGAAGCATCCAGCACCATaGACTTGGAGAACGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQKHPAP*TWRTRP
Trigger: TGGCCTCGTTCTCCAAGTCCATGGTGCTGGATGCTT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGAACTGTGGGAACCTCTaGATGGGCCGCATCATAAGG +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQNCGNL*MGRIIR
Trigger: CCTTATGATGCGGCCCATCCAGAGGTTCCCACAGTT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGTTTCGGTGGTTTCTTaGGGCTTTGACTCCTCTGCG +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQVSVVS*GFDSSA
Trigger: CGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAAC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATGCATACAGGCCTTGTaGGGAGCAGGCCAAGCTCAT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGACIQAL*GAGQAH
Trigger: ATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTGCATACAGGCCTTGTaGGGAGCAGGCCAAGCTCAT +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFCIQAL*GAGQAH
Trigger: ATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTGCATACAGGCCTTGTaGGGAGCAGGCCAAGCTCAT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFCIQAL*GAGQAH
Trigger: ATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCCAGCCACAGCCATGTaGGAGATGACCATCCCTTCA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFPATAM*EMTIPS
Trigger: TGAAGGGATGGTCATCTCCCACATGGCTGTGGCTGG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCCAGCCACAGCCATGTaGGAGATGACCATCCCTTCA +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFPATAM*EMTIPS
Trigger: TGAAGGGATGGTCATCTCCCACATGGCTGTGGCTGG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACCAGCCACAGCCATGTaGGAGATGACCATCCCTTCA +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAPATAM*EMTIPS
Trigger: TGAAGGGATGGTCATCTCCCACATGGCTGTGGCTGG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCTGCACATTCAATCTTaGACTCTGGCTGCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQLHIQS*TLAAWP
Trigger: TGGCCAAGCAGCCAGAGTTCAAGATTGAATGTGCAG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR TCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTACGGGCTGTGGAGGGTaGGGCTGGTTGACTTTCATT +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSTGCGG*GWLTFI
Trigger: AATGAAAGTCAACCAGCCTCACCCTCCACAGCCCGT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCTCCACGCTGGCCATaGACACCTGCCCTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSPRWP*TPALPR
Trigger: CCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCAGCCATGTGGGAGATaGCCATCCCTTCATCTTGGT +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFQPCGR*PSLHLG
Trigger: ACCAAGATGAAGGGATGGTCATCTCCCACATGGCTG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGACAGATCATTCTTTTaGGTTGGCAATCCTAGGGAG +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGDRSFF*VGNPRE
Trigger: CTCCCTAGGATTGCCAACTCAAAAGAATGATCTGTC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTATCTCCCACAGTTTCTaGTGCTTCTTCCTCCTCTAC +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAISHSF*CFFLLY
Trigger: GTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGAGAT...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTGTCCACAGATCTGTaGTCTAGGGAACTGGAGCCA +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLSTDL*SRELEP
Trigger: TGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGACGGGTTCACTTTTGTaGGGACCACAAGTTTCGCAG +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQTGSLL*GPQVSQ
Trigger: CTGCGAAACTTGTGGTCCCCACAAAAGTGAACCCGT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCCAGCACCATGGACTTaGAGAACGAGGCCACAAAAA +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQPAPWT*RTRPQK
Trigger: TTTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCAAGCATCCAGCACCATaGACTTGGAGAACGAGGCCA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFKHPAP*TWRTRP
Trigger: TGGCCTCGTTCTCCAAGTCCATGGTGCTGGATGCTT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTGGCTCATCACGGCATaGCTTTCATGTGAGTTCCGT +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQWLITA*LSCEFR
Trigger: ACGGAACTCACATGAAAGCCATGCCGTGATGAGCCA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTCTTTTGCTATTTGTTTaGTTTCGCATCGCTGGTCGG +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSALLLFV*FRIAGR
Trigger: CCGACCAGCGATGCGAAATCAAACAAATAGCAAAAG...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAAGCGGTCGGCAGCTCTaGTCGCATCTTCTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSGRQL*SHLLSS
Trigger: TGAGGAAAGAAGATGCGATCAGAGCTGCCGACCGCT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTGCACATTCAATCTTaGACTCTGGCTGCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLHIQS*TLAAWP
Trigger: TGGCCAAGCAGCCAGAGTTCAAGATTGAATGTGCAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR TCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGGCTGGTACCGACCATaGGCAAGCCGTGGCAGACGA +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQGWYRP*ASRGRR
Trigger: TCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGCCAGCTTGGCCATCTaGAGGCTGCTGACCCAGGAC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQASLAI*RLLTQD
Trigger: GTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTGGC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTATCTTGAACTCTGGCTaGTTGGCCACCATCACAGGC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSILNSG*LATITG
Trigger: GCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAAGAT...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACCCAGCAGGGGGATCTaGCACACCATCACTGAAGAA +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKPSRGI*HTITEE
Trigger: TTCTTCAGTGATGGTGTGGCAGATCCCCCTGCTGGG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCACGGGTTCACTTTTGTaGGGACCACAAGTTTCGCAG +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFTGSLL*GPQVSQ
Trigger: CTGCGAAACTTGTGGTCCCCACAAAAGTGAACCCGT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTTCTTCACAGCAGCTTTaGTTTTCTCCAGCCCATCTT +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSASSQQL*FSPAHL
Trigger: AAGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGA...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCACCAGCACCATGGACTTaGAGAACGAGGCCACAAAAA +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAPAPWT*RTRPQK
Trigger: TTTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGG...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATGGCTCATCACGGCATaGCTTTCATGTGAGTTCCGT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAWLITA*LSCEFR
Trigger: ACGGAACTCACATGAAAGCCATGCCGTGATGAGCCA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTCAGAACCATCCCATATaGTTCTCCTCCTCAAGGGCC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSQNHPI*FSSSRA
Trigger: GGCCCTTGAGGAGGAGAACCATATGGGATGGTTCTG...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGTTTCGGTGGTTTCTTaGGGCTTTGACTCCTCTGCG +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSVSVVS*GFDSSA
Trigger: CGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAAC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTGTGCCCAGGCAGATaGTGGGCACATGGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLCPGR*WAHGVL
Trigger: GAGCACCCCATGTGCCCACCATCTGCCTGGGCACAG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAATCCATCTGGAGCCTTaGTGTAGCTGGCTACGGACC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKIHLEP*CSWLRT
Trigger: GGTCCGTAGCCAGCTACACCAAGGCTCCAGATGGAT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAAACGTGGGCTGTCCCTaGCTCTGTCCTTGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGANVGCP*LCPCFE
Trigger: TTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTGCAGAGCAAGTCCTTaGGGTCTTCATCCTGAAGCT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFCRASP*GLHPEA
Trigger: AGCTTCAGGATGAAGACCCCAAGGACTTGCTCTGCA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTGCAGAGCAAGTCCTTaGGGTCTTCATCCTGAAGCT +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFCRASP*GLHPEA
Trigger: AGCTTCAGGATGAAGACCCCAAGGACTTGCTCTGCA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGAAACCAGGTCCTCCTaGGAAGGCTGCCTGGCCTTC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLETRSS*EGCLAF
Trigger: GAAGGCCAGGCAGCCTTCTCAGGAGGACCTGGTTTC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTGCATTTGCTTTTTATaGCTGCTGCGCAGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFCICFL*LLRRKD
Trigger: GTCCTTCCTGCGCAGCAGTCATAAAAAGCAAATGCA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCCAGTTCCATTTCCTaGAGGGCACGTGTTCTCGTC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSSSIS*RARVLV
Trigger: GACGAGAACACGTGCCCTGCAGGAAATGGAACTGGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTCCCACAGTTTCTGCTaGTTCTTCCTCCTCTACAGA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFSHSFC*FFLLYR
Trigger: TCTGTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATGGATTTTCCATCCATaGTGTGTTGGCAGGGTCGGC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKWIFHP*CVGRVG
Trigger: GCCGACCCTGCCAACACAGCATGGATGGAAAATCCA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAATCTTTTCCTCACAGTaGGCCTTAAAGCGGGTTAGG +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAIFSSQ*ALKRVR
Trigger: CCTAACCCGCTTTAAGGCGCACTGTGAGGAAAAGAT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR GCA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTTCTTCAGCATGTCCTaGAGTAGGAGGATGAACTGT +
Preference number: 4 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQFFSMS*SRRMNC
Trigger: ACAGTTCATCCTCCTACTGCAGGACATGCTGAAGAA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAATCTTGAACTCTGGCTaGTTGGCCACCATCACAGGC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKILNSG*LATITG
Trigger: GCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAAGAT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTGTCCACAGATCTGTaGTCTAGGGAACTGGAGCCA +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLSTDL*SRELEP
Trigger: TGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAAACTGTGGGAACCTCTaGATGGGCCGCATCATAAGG +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKNCGNL*MGRIIR
Trigger: CCTTATGATGCGGCCCATCCAGAGGTTCCCACAGTT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCAGGTTCTGCAGATCCTaGTACAGCTGCCCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLRFCRS*YSCPGP
Trigger: GGGGCCAGGGCAGCTGTACCAGGATCTGCAGAACCT...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCGGACTCCTTGATGGCTaGTGTAAGCGTATTGAACAC +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFGLLDG*CKRIEH
Trigger: GTGTTCAATACGCTTACACCAGCCATCAAGGAGTCC...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAGGACTCCTTGATGGCTaGTGTAAGCGTATTGAACAC +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAGLLDG*CKRIEH
Trigger: GTGTTCAATACGCTTACACCAGCCATCAAGGAGTCC...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAACTCAGAACCGGAACGTaGGCTGTCCCTGGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLRTGT*AVPGSV
Trigger: GACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAG...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGCACGTGTTCTCGTCTaGACCTCCTGCTTCAGCACC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQARVLV*TSCFST
Trigger: GGTGCTGAAGCAGGAGGTGCAGACGAGAACACGTGC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTAACGTCGTCGTAAATTaGTTCCTCTGGATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSANVVVN*FLWIFH
Trigger: ATGGAAAATCCAGAGGAAGCAATTTACGACGACGTT...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCTTCAGGGTTATAAGCTaGACATTCAATCTTGAACTC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGFRVIS*TFNLEL
Trigger: GAGTTCAAGATTGAATGTGCAGCTTATAACCCTGAA...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTCAATGTTGACATCCTaGAGGTGCTTCAAGGTCTCT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFSMLTS*RCFKVS
Trigger: AGAGACCTTGAAGCACCTGCAGGATGTCAACATTGA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCATAAATCATTTCATCTaGCTCAGAGTCCGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGINHFI*LRVRVF
Trigger: GAAAACTCGGACTCTGAGCCAGATGAAATGATTTAT...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGGACTCCTTGATGGCTaGTGTAAGCGTATTGAACAC +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSGLLDG*CKRIEH
Trigger: GTGTTCAATACGCTTACACCAGCCATCAAGGAGTCC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGGCAGACGAGCAGGCTaGTCACAGATAGACGCTGGT +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQGRRAG*SQIDAG
Trigger: ACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTCGCCCTGTCACTTTaGGGATACCCTGAAGCCGAG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLALSL*GYPEAE
Trigger: CTCGGCTTCAGGGTATCCCCAAAGTGACAGGGCGAG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATGCAGAGCAAGTCCTTaGGGTCTTCATCCTGAAGCT +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKCRASP*GLHPEA
Trigger: AGCTTCAGGATGAAGACCCCAAGGACTTGCTCTGCA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCAGCGGTCGGCAGCTCTaGTCGCATCTTCTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSGRQL*SHLLSS
Trigger: TGAGGAAAGAAGATGCGATCAGAGCTGCCGACCGCT...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACATACACAGGATGCGTaGTTCCACATTGAAGCACTC +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKHTQDA*FHIEAL
Trigger: GAGTGCTTCAATGTGGAATCACGCATCCTGTGTATG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCACTGCCTTCTTGGCTaGCTTGCTCACTGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLHCLLG*LAHCCV
Trigger: CACACAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCAAGGACCTTCCTCGCTaGAGAGCAAGTCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLKDLPR*RASPWG
Trigger: ACCCCAAGGACTTGCTCTGCAGCGAGGAAGGTCCTT...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTCCTCTTCGTTGTTGCTaGTGTCACATTTCGCTTCAT +
Preference number: 4 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSPLRCC*CHISLH
Trigger: ATGAAGCGAAATGTGACACCAGCAACAACGAAGAGG...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAATCCATCTGGAGCCTTaGTGTAGCTGGCTACGGACC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQIHLEP*CSWLRT
Trigger: GGTCCGTAGCCAGCTACACCAAGGCTCCAGATGGAT...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATTCAAGGTCTCTGTGTaGAAGAGGCGGAGGGTGGAC +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQFKVSV*KRRRVD
Trigger: GTCCACCCTCCGCCTCTTCCACACAGAGACCTTGAA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTTTTGCTATTTGTTTaGTTTCGCATCGCTGGTCGG +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLLLFV*FRIAGR
Trigger: CCGACCAGCGATGCGAAATCAAACAAATAGCAAAAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCAGCCATGTGGGAGATaGCCATCCCTTCATCTTGGT +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLQPCGR*PSLHLG
Trigger: ACCAAGATGAAGGGATGGTCATCTCCCACATGGCTG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATTGAAACGCCGTGGCTaGGACGATGAACTTAACGGG +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLKRRG*DDELNG
Trigger: CCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATTGGGGTCTTCATCCTaGAGCTCAGAACCGGAACGT +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLGSSS*SSEPER
Trigger: ACGTTCCGGTTCTGAGCTTCAGGATGAAGACCCCAA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCAACGTCGTCGTAAATTaGTTCCTCTGGATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFNVVVN*FLWIFH
Trigger: ATGGAAAATCCAGAGGAAGCAATTTACGACGACGTT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGCCTTCATAAGCTTCTaGATCTTCCGCTCCTGCCTC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLAFISF*IFRSCL
Trigger: GAGGCAGGAGCGGAAGATGCAGAAGCTTATGAAGGC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATTTTGTAAATGGAAATaGTTCCCTCTTCTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAFCKWK*FPLLCP
Trigger: TGGGCACAGAAGAGGGAAGCATTTCCATTTACAAAA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTTTTGTAAATGGAAATaGTTCCCTCTTCTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFFCKWK*FPLLCP
Trigger: TGGGCACAGAAGAGGGAAGCATTTCCATTTACAAAA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAGTAAATTGCTTCCTCTaGATTTTCCATCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAVNCFL*IFHPCC
Trigger: ACAGCATGGATGGAAAATCCAGAGGAAGCAATTTAC...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCTTCACAGCAGCTTTaGTTTTCTCCAGCCCATCTT +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSSQQL*FSPAHL
Trigger: AAGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCGCATCATAAGGCTGTaGAGTGTGACTCGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLRIIRL*SVTRSG
Trigger: TCCAGACCGAGTCACACTCCACAGCCTTATGATGCG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTGGTACAGCTGCCCTaGCCCCATGTAAACTTTGTG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLVQLP*PHVNFV
Trigger: CACAAAGTTTACATGGGGCCAGGGCAGCTGTACCAG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTTGGGGTTGGAACCTTaGAAGGAGACAATGGCGACC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLGLEP*KETMAT
Trigger: GGTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGTTTCGGTGGTTTCTTaGGGCTTTGACTCCTCTGCG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLVSVVS*GFDSSA
Trigger: CGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAAC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGAGAGTTGCTTTTTATaGCTGCTGCGCAGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLESCFL*LLRRKD
Trigger: GTCCTTCCTGCGCAGCAGTCATAAAAAGCAACTCTC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR TCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGGTAGAAAACCATCCTaGGCTTCCTGTCACTCAGGA +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQGRKPS*ASCHSG
Trigger: TCCTGAGTGACAGGAAGCTCAGGATGGTTTTCTACC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGTTGCTTTTTATGACTaGTGCGCAGGAAGGACCTGG +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLVAFYD*CAGRTW
Trigger: CCAGGTCCTTCCTGCGCAGCAGTCATAAAAAGCAAC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR GCA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATTCAGGGTTATAAGCTaGACATTCAATCTTGAACTC +
Preference number: 4 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAFRVIS*TFNLEL
Trigger: GAGTTCAAGATTGAATGTGCAGCTTATAACCCTGAA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCATAAATCATTTCATCTaGCTCAGAGTCCGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFINHFI*LRVRVF
Trigger: GAAAACTCGGACTCTGAGCCAGATGAAATGATTTAT...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAACCAGCACCATGGACTTaGAGAACGAGGCCACAAAAA +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQPAPWT*RTRPQK
Trigger: TTTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGG...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAACCCGACGTCCAATCATaGGCTACAGACTGGTTTAAG +
Preference number: 4 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQPDVQS*ATDWFK
Trigger: CTTAAACCAGTCTGTAGCCCATGATTGGACGTCGGG...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCGGTGTGTCTCCTTCTTaGCTAGGTTGCCATCGTCAT +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLGVSPS*LGCHRH
Trigger: ATGACGATGGCAACCTAGCCAAGAAGGAGACACACC...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR TCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCATACACAGGATGCGTaGTTCCACATTGAAGCACTC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLHTQDA*FHIEAL
Trigger: GAGTGCTTCAATGTGGAATCACGCATCCTGTGTATG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCATCTCCCACAGTTTCTaGTGCTTCTTCCTCCTCTAC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLISHSF*CFFLLY
Trigger: GTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGAGAT...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATTTTGTAAATGGAAATaGTTCCCTCTTCTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKFCKWK*FPLLCP
Trigger: TGGGCACAGAAGAGGGAAGCATTTCCATTTACAAAA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTTCAATCTTGAACTCTaGCTGCTTGGCCACCATCAC +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLFNLEL*LLGHHH
Trigger: GTGATGGTGGCCAAGCAGCCAGAGTTCAAGATTGAA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR GCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTTCTTCAGCATGTCCTaGAGTAGGAGGATGAACTGT +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLFFSMS*SRRMNC
Trigger: ACAGTTCATCCTCCTACTGCAGGACATGCTGAAGAA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CCA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCCTCTTCGTTGTTGCTaGTGTCACATTTCGCTTCAT +
Preference number: 4 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLPLRCC*CHISLH
Trigger: ATGAAGCGAAATGTGACACCAGCAACAACGAAGAGG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATCCTGTGGTCTGCTCCTaGGGGAGGCACTGGGGTCCC +
Preference number: 5 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDPVVCS*GRHWGP
Trigger: GGGACCCCAGTGCCTCCCCAAGGAGCAGACCACAGG...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp AACTTTGTGTGGCTTCGCGTTGGCCACCACGGCCAGGCTCTCAGGTaGGTGTGCAGCGTGGTGCCGACAGTGCTCCCCGGCGCCAGAGCC +
Preference number: 5 (lower is better)
Translates to: NFVWLRVGHHGQALR*VCSVVPTVLPGARA
Trigger: GGCTCTGGCGCCGGGGAGCACTGTCGGCACCACGCTGCACACTCACCTGAGAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACAAAGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGCCTGCATACAGGCCTaGTGGGGAGCAGGCCAAGCT +
Preference number: 5 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDACIQA*WGAGQA
Trigger: AGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp AGGGCCACCACGACACCCAGGCTGGTACCGACCATGAGCAAGCCGTaGCAGACGAGCAGGCTGGTCACAGATAGACGCTGGTGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: RATTTPRLVPTMSKP*QTSRLVTDRRWCPG
Trigger: GCCAGGGCACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCCTGGGTGTCGTGGTGGCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp CTCCACGCTGGCCATGAACACCTGCCCTCCCGAGGCTGCCCACAGTaGACCCTCCACCAGGAGAAGGCTTCTGACTGGCAGGACACCCAA +
Preference number: 5 (lower is better)
Translates to: LHAGHEHLPSRGCPQ*TLHQEKASDWQDTQ
Trigger: TTGGGTGTCCTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp TCCATGCTGTGTTGGCAGGGTCGGCTGCCCATCGGGCCAGGGCACTaGCTTCTTGGCTGCCTTGCTCACTGTGTGGAAGGTCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: SMLCWQGRLPIGPGH*LLGCLAHCVEGPRS
Trigger: GCTCCGAGGACCTTCCACACAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCATGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161162.8
CDS GCA 90 bp AGTGTGAGTCTCCACGCTGGCCATGAACACCTGCCCTCCCGAGGCTaGCCACAGTGCACCCTCCACCAGGAGAAGGCTTCTGACTGGCAG +
Preference number: 5 (lower is better)
Translates to: SVSLHAGHEHLPSRG*PQCTLHQEKASDWQ
Trigger: CTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAGACTCACACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp GTGTTGGCAGGGTCGGCTGCCCATCGGGCCAGGGCACTGCCTTCTTaGCTGCCTTGCTCACTGTGTGGAAGGTCCTCGGAGCTTAGGGAA +
Preference number: 5 (lower is better)
Translates to: VLAGSAAHRARALPS*LPCSLCGRSSELRE
Trigger: TTCCCTAAGCTCCGAGGACCTTCCACACAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161162.8
CDS-3UTR CAA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATTGTGTGGCTTCGCGTaGGCCACCACGGCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTLCGFA*ATTARL
Trigger: GAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACAA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATGGGTGTGTCTCCTTCTaGGCTAGGTTGCCATCGTCA +
Preference number: 5 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDGCVSF*ARLPSS
Trigger: TGACGATGGCAACCTAGCCAAGAAGGAGACACACCC...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp CGCAGGCTCTGCCTCGGGGGCAGGTTCAGCTCCAGTTCCATTTCCTaGAGGGCACGTGTTCTCGTCTGCACCTCCTGCTTCAGCACCTCT +
Preference number: 5 (lower is better)
Translates to: RRLCLGGRFSSSSIS*RARVLVCTSCFSTS
Trigger: AGAGGTGCTGAAGCAGGAGGTGCAGACGAGAACACGTGCCCTGCAGGAAATGGAACTGGAGCTGAACCTGCCCCCGAGGCAGAGCCTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp TGGAGGGGACAGCATAGCCACAGGGCACAGGCACAGAGTAACCACTaGGCACACGCAGCCCCACGCCTTCCTCCTCTGTATTCGCGTCTG +
Preference number: 5 (lower is better)
Translates to: WRGQHSHRAQAQSNH*AHAAPRLPPLYSRL
Trigger: CAGACGCGAATACAGAGGAGGAAGGCGTGGGGCTGCGTGTGCCCAGTGGTTACTCTGTGCCTGTGCCCTGTGGCTATGCTGTCCCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp AACGTGGGCCGCCCGGACTTGTCCTGCTTTCCCGGGAGCTGTAACTaGATCCGGCAGCGGTCGGCAGCTCTGATCGCATCTTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: NVGRPDLSCFPGSCN*IRQRSAALIASSFL
Trigger: GAGGAAAGAAGATGCGATCAGAGCTGCCGACCGCTGCCGGATCCAGTTACAGCTCCCGGGAAAGCAGGACAAGTCCGGGCGGCCCACGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp CTGCCCATCGGGCCAGGGCACTGCCTTCTTGGCTGCCTTGCTCACTaGTGTGTGGAAGGTCCTCGGAGCTTAGGGAATTGCACTGCCCAT +
Preference number: 5 (lower is better)
Translates to: LPIGPGHCLLGCLAH*CVEGPRSLGNCTAH
Trigger: ATGGGCAGTGCAATTCCCTAAGCTCCGAGGACCTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CCA 90 bp CTCGGCTCGGATGATGACAGGACTGGAGTAGGCAGGCAGCAGCAATaGCAGGTTGGAGGGGACAGCATAGCCACAGGGCACAGGCACAGA +
Preference number: 5 (lower is better)
Translates to: LGSDDDRTGVGRQQQ*QVGGDSIATGHRHR
Trigger: TCTGTGCCTGTGCCCTGTGGCTATGCTGTCCCCTCCAACCTGCCATTGCTGCTGCCTGCCTACTCCAGTCCTGTCATCATCCGAGCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS-3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTCGATGACTTTGGGGTaGGAACCTTGGAAGGAGACA +
Preference number: 5 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDSMTLG*EPWKET
Trigger: TGTCTCCTTCCAAGGTTCCAACCCCAAAGTCATCGA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCCTGTGGTCTGCTCCTaGGGGAGGCACTGGGGTCCC +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQPVVCS*GRHWGP
Trigger: GGGACCCCAGTGCCTCCCCAAGGAGCAGACCACAGG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp GCTTTCCCGGGAGCTGTAACTGGATCCGGCAGCGGTCGGCAGCTCTaGTCGCATCTTCTTTCCTCAGTATCAGCCGCTGTAAGCCCGACG +
Preference number: 5 (lower is better)
Translates to: AFPGAVTGSGSGRQL*SHLLSSVSAAVSPT
Trigger: CGTCGGGCTTACAGCGGCTGATACTGAGGAAAGAAGATGCGATCAGAGCTGCCGACCGCTGCCGGATCCAGTTACAGCTCCCGGGAAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp TGCTTCCTCTGGATTTTCCATCCATGCTGTGTTGGCAGGGTCGGCTaGCCATCGGGCCAGGGCACTGCCTTCTTGGCTGCCTTGCTCACT +
Preference number: 5 (lower is better)
Translates to: CFLWIFHPCCVGRVG*PSGQGTAFLAALLT
Trigger: AGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCATGGATGGAAAATCCAGAGGAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 90 bp ATCTGGAGCCTTGGTGTAGCTGGCTACGGACCCATTGACCAGGCCTaGATACAGGCCTTGTGGGGAGCAGGCCAAGCTCATGACCGTGGA +
Preference number: 5 (lower is better)
Translates to: IWSLGVAGYGPIDQA*IQALWGAGQAHDRG
Trigger: TCCACGGTCATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTAGCCAGCTACACCAAGGCTCCAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp CTGGGGTCCCTCAGCAGGTCACACAGACTGCTGTCCACAGATCTGTaGTCTAGGGAACTGGAGCCATGGGACAGGTTCAGTGACCCCGAG +
Preference number: 5 (lower is better)
Translates to: LGSLSRSHRLLSTDL*SRELEPWDRFSDPE
Trigger: CTCGGGGTCACTGAACCTGTCCCATGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAGCAGTCTGTGTGACCTGCTGAGGGACCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp GTAGCTGGCTACGGACCCATTGACCAGGCCTGCATACAGGCCTTGTaGGGAGCAGGCCAAGCTCATGACCGTGGACTTGTCCGGTGCATA +
Preference number: 5 (lower is better)
Translates to: VAGYGPIDQACIQAL*GAGQAHDRGLVRCI
Trigger: TATGCACCGGACAAGTCCACGGTCATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTAGCCAGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp CGAGGCTGCCCACAGTGCACCCTCCACCAGGAGAAGGCTTCTGACTaGCAGGACACCCAACTTGATCACTTGCTGGGGTTCCGAGTTCCA +
Preference number: 5 (lower is better)
Translates to: RGCPQCTLHQEKASD*QDTQLDHLLGFRVP
Trigger: TGGAACTCGGAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTTGTGTGGCTTCGCGTaGGCCACCACGGCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQLCGFA*ATTARL
Trigger: GAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACAA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCCTGTGGTCTGCTCCTaGGGGAGGCACTGGGGTCCC +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFPVVCS*GRHWGP
Trigger: GGGACCCCAGTGCCTCCCCAAGGAGCAGACCACAGG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp CACACGCAGCCCCACGCCTTCCTCCTCTGTATTCGCGTCTGGAGATaGCGGCTGGTCTTCCTGCAGCGGCGTGATGTCGATGACAGAATA +
Preference number: 5 (lower is better)
Translates to: HTQPHAFLLCIRVWR*RLVFLQRRDVDDRI
Trigger: TATTCTGTCATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGAGGAGGAAGGCGTGGGGCTGCGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS TCA 90 bp GAAGGACCTTCCTCGCTGCAGAGCAAGTCCTTGGGGTCTTCATCCTaGAGCTCAGAACCGGAACGTGGGCTGTCCCTGGCTCTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: EGPSSLQSKSLGSSS*SSEPERGLSLALSL
Trigger: CAAGGACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAGCTTCAGGATGAAGACCCCAAGGACTTGCTCTGCAGCGAGGAAGGTCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp AGGTTCAGCTCCAGTTCCATTTCCTGCAGGGCACGTGTTCTCGTCTaGACCTCCTGCTTCAGCACCTCTCGTCCTATCGTCGGCAGACGG +
Preference number: 5 (lower is better)
Translates to: RFSSSSISCRARVLV*TSCFSTSRPIVGRR
Trigger: CCGTCTGCCGACGATAGGACGAGAGGTGCTGAAGCAGGAGGTGCAGACGAGAACACGTGCCCTGCAGGAAATGGAACTGGAGCTGAACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 90 bp GGCAGCATGCTATGCACAGGGGCATCAATGTTGACATCCTGCAGGTaGTTCAAGGTCTCTGTGTGGAAGAGGCGGAGGGTGGACCCCGAG +
Preference number: 5 (lower is better)
Translates to: GSMLCTGASMLTSCR*FKVSVWKRRRVDPE
Trigger: CTCGGGGTCCACCCTCCGCCTCTTCCACACAGAGACCTTGAAGCACCTGCAGGATGTCAACATTGATGCCCCTGTGCATAGCATGCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp AGCAAGCCGTGGCAGACGAGCAGGCTGGTCACAGATAGACGCTGGTaGCCTGGCAGCATGCTATGCACAGGGGCATCAATGTTGACATCC +
Preference number: 5 (lower is better)
Translates to: SKPWQTSRLVTDRRW*PGSMLCTGASMLTS
Trigger: GGATGTCAACATTGATGCCCCTGTGCATAGCATGCTGCCAGGGCACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCACGGCTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp AGCCCCACGCCTTCCTCCTCTGTATTCGCGTCTGGAGATGACGGCTaGTCTTCCTGCAGCGGCGTGATGTCGATGACAGAATACGGGTTC +
Preference number: 5 (lower is better)
Translates to: SPTPSSSVFASGDDG*SSCSGVMSMTEYGF
Trigger: GAACCCGTATTCTGTCATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGAGGAGGAAGGCGTGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp CGTCGTCGTAAATTGCTTCCTCTGGATTTTCCATCCATGCTGTGTTaGCAGGGTCGGCTGCCCATCGGGCCAGGGCACTGCCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: RRRKLLPLDFPSMLC*QGRLPIGPGHCLLG
Trigger: GCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCATGGATGGAAAATCCAGAGGAAGCAATTTACGACGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp CAGCTTGGCCATCTGCAGGCTGCTGACCCAGGACTCCTTGATGGCTaGTGTAAGCGTATTGAACACAGCAGTGAAGAACGTGGGCCGCCC +
Preference number: 5 (lower is better)
Translates to: QLGHLQAADPGLLDG*CKRIEHSSEERGPP
Trigger: GGGCGGCCCACGTTCTTCACTGCTGTGTTCAATACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCGCCTTCTTGGCTGCCTaGCTCACTGCTGTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGAFLAA*LTAVWK
Trigger: CTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGGC...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS TCA 90 bp CTCTCAACAATGGAGCCCAGAATGTATCTTCTCACAACCTGCTGCTaGGACAAGCCCTCGGGCATTGGGGTGAGGACAGCCTCCGGGTGC +
Preference number: 5 (lower is better)
Translates to: LSTMEPRMYLLTTCC*DKPSGIGVRTASGC
Trigger: GCACCCGGAGGCTGTCCTCACCCCAATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAGAAGATACATTCTGGGCTCCATTGTTGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS GCA 90 bp CCTCCTGCTTCAGCACCTCTCGTCCTATCGTCGGCAGACGGGACTTaGCGATCCGCTTCGGGAACTTCATCTCCACTGTCGAAGTCAAAC +
Preference number: 5 (lower is better)
Translates to: PPASAPLVLSSADGT*RSASGTSSPLSKSN
Trigger: GTTTGACTTCGACAGTGGAGATGAAGTTCCCGAAGCGGATCGGCAAGTCCCGTCTGCCGACGATAGGACGAGAGGTGCTGAAGCAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 90 bp AATGCTTCCCTCTTCTGTGCCCAGGCAGATGGTGGGCACATGGGGTaGTCTCGAGGCTGTGGCTTCTGGATCCTTGGTTTCGGTGGTTTC +
Preference number: 5 (lower is better)
Translates to: NASLFCAQADGGHMG*SRGCGFWILGFGGF
Trigger: GAAACCACCGAAACCAAGGATCCAGAAGCCACAGCCTCGAGAGCACCCCATGTGCCCACCATCTGCCTGGGCACAGAAGAGGGAAGCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp GCGCAGGAAGGACCTGGGAATTCCGTTCTTGCCCTCCGAGTCGCTTaGCTCCTCATAGCTTTCGAATTCGCTGGAACTCCACCCGTACTC +
Preference number: 5 (lower is better)
Translates to: AQEGPGNSVLALRVA*LLIAFEFAGTPPVL
Trigger: GAGTACGGGTGGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp ATGAGCAAGCCGTGGCAGACGAGCAGGCTGGTCACAGATAGACGCTaGTGCCCTGGCAGCATGCTATGCACAGGGGCATCAATGTTGACA +
Preference number: 5 (lower is better)
Translates to: MSKPWQTSRLVTDRR*CPGSMLCTGASMLT
Trigger: TGTCAACATTGATGCCCCTGTGCATAGCATGCTGCCAGGGCACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCACGGCTTGCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GTGCACAGAAGACCAGAGACACATCTAGCACCATCCCTGCATGACTGGGCCGGCCTGACCCAGGACTCCTaGATGGCTGGTGTAAGCGTA +
Preference number: 5 (lower is better)
Translates to: VHRRPETHLAPSLHDWAGLTQDS*MAGVSV
Trigger: TACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAG...GCCGGCCCAGTCATGCAGGGATGGTGCTAGATGTGTCTCTGGTCTTCTGTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTCCTCAAGGGCCAGCTaGGCCATCTGCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFSSRAS*AICRLL
Trigger: CAGCAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACATTTGGGGTTGGAACCTaGGAAGGAGACAATGGCGAC +
Preference number: 5 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTFGVGT*EGDNGD
Trigger: GTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAAA...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGCCTGCATACAGGCCTaGTGGGGAGCAGGCCAAGCT +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFACIQA*WGAGQA
Trigger: AGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCGCCTGCATACAGGCCTaGTGGGGAGCAGGCCAAGCT +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFACIQA*WGAGQA
Trigger: AGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGC...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp ACGTGGGCTGTCCCTGGCTCTGTCCTTGTTTTGAAACGCCGTGGCTaGGACGATGAACTTAACGGGCCCGTTATGCGCATGGTAGGAGAC +
Preference number: 5 (lower is better)
Translates to: TWAVPGSVLVLKRRG*DDELNGPVMRMVGD
Trigger: GTCTCCTACCATGCGCATAACGGGCCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAAAACAAGGACAGAGCCAGGGACAGCCCACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp AGCTCAGAACCGGAACGTGGGCTGTCCCTGGCTCTGTCCTTGTTTTaGAACGCCGTGGCTGAGACGATGAACTTAACGGGCCCGTTATGC +
Preference number: 5 (lower is better)
Translates to: SSEPERGLSLALSLF*NAVAETMNLTGPLC
Trigger: GCATAACGGGCCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp AGGTTTCCTATCAGCTGCGAGATCTGGCCAACAACGTTCAGGTCGTaGAGTAGGTTCTGCAGATCCTGGTACAGCTGCCCTGGCCCCATG +
Preference number: 5 (lower is better)
Translates to: RFPISCEIWPTTFRS*SRFCRSWYSCPGPM
Trigger: CATGGGGCCAGGGCAGCTGTACCAGGATCTGCAGAACCTACTGCACGACCTGAACGTTGTTGGCCAGATCTCGCAGCTGATAGGAAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp AACCATCCCATATGGTTCTCCTCCTCAAGGGCCAGCTTGGCCATCTaGAGGCTGCTGACCCAGGACTCCTTGATGGCTGGTGTAAGCGTA +
Preference number: 5 (lower is better)
Translates to: NHPIWFSSSRASLAI*RLLTQDSLMAGVSV
Trigger: TACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGAGGAGAACCATATGGGATGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp GGTTGGAACCTTGGAAGGAGACAATGGCGACCTGACCCATCTGGTTaGTACAGCTTCCAATCCACAGAAAGCCACGGGCTGTGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: GWNLGRRQWRPDPSG*YSFQSTESHGLWRV
Trigger: CACCCTCCACAGCCCGTGGCTTTCTGTGGATTGGAAGCTGTAGCAACCAGATGGGTCAGGTCGCCATTGTCTCCTTCCAAGGTTCCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CCA 90 bp TCTTGCCCTCCGAGTCGCTTGGCTCCTCATAGCTTTCGAATTCGCTaGAACTCCACCCGTACTCTGGGGAGCTGTTTCCACCTTCTTCGC +
Preference number: 5 (lower is better)
Translates to: SCPPSRLAPHSFRIR*NSTRTLGSCFHLLR
Trigger: GCGAAGAAGGTGGAAACAGCTCCCCAGAGTACGGGTGGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 90 bp TCTGCATCTTCCGCTCCTGCCTCTGCTTTGCCTGCTGAATCTCCATaGCTCCCACCGTACTGGCCACCAAGCCTCTCATCTTTTCCTCAC +
Preference number: 5 (lower is better)
Translates to: SASSAPASALPAESP*LPPYWPPSLSSFPH
Trigger: GTGAGGAAAAGATGAGAGGCTTGGTGGCCAGTACGGTGGGAGCCATGGAGATTCAGCAGGCAAAGCAGAGGCAGGAGCGGAAGATGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000161162.8
CDS-3UTR CAA 90 bp CACAGCCAGGGCGCTCCCCTGCTTCCCTGGCACAGCTGGGCTCCGTTGTGCGATTATGGCTTTTGCTATTaGTTTGATTTCGCATCGCTG +
Preference number: 5 (lower is better)
Translates to: HSQGAPLLPWHSWAPLCDYGFCY*FDFASL
Trigger: CAGCGATGCGAAATCAAACAAATAGCAAAAGCCATA...ATCGCACAACGGAGCCCAGCTGTGCCAGGGAAGCAGGGGAGCGCCCTGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp TTCATAAGCTTCTGCATCTTCCGCTCCTGCCTCTGCTTTGCCTGCTaGATCTCCATGGCTCCCACCGTACTGGCCACCAAGCCTCTCATC +
Preference number: 5 (lower is better)
Translates to: FISFCIFRSCLCFAC*ISMAPTVLATKPLI
Trigger: GATGAGAGGCTTGGTGGCCAGTACGGTGGGAGCCATGGAGATTCAGCAGGCAAAGCAGAGGCAGGAGCGGAAGATGCAGAAGCTTATGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000161162.8
CDS CCA 90 bp AATGTATCTTCTCACAACCTGCTGCTGAGACAAGCCCTCGGGCATTaGGGTGAGGACAGCCTCCGGGTGCTTGCAGTCCACGTCAATGAA +
Preference number: 5 (lower is better)
Translates to: NVSSHNLLLRQALGH*GEDSLRVLAVHVNE
Trigger: TTCATTGACGTGGACTGCAAGCACCCGGAGGCTGTCCTCACCCCAATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAGAAGATACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGCCTTCTTGGCTGCCTaGCTCACTGCTGTGTGGAAG +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFAFLAA*LTAVWK
Trigger: CTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGGC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGCTCCTGCCTCTGCTTaGCCTGCTGAATCTCCATGG +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFAPASA*PAESPW
Trigger: CCATGGAGATTCAGCAGGCAAAGCAGAGGCAGGAGC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084207.12
CDS-3UTR CAA 90 bp ACAGCTGGGCTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAATAACACCTGTGATCTaGAGAGACCAAGGACCTGGT +
Preference number: 5 (lower is better)
Translates to: TAGLRCAMGGRQESRVTTITPVI*RDQGPG
Trigger: ACCAGGTCCTTGGTCTCTCAAGATCACAGGTGTTAT...TGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAGCCCAGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCCTCAAGGGCCAGCTaGGCCATCTGCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSSRAS*AICRLL
Trigger: CAGCAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 90 bp CCTTCCTCCTCTGTATTCGCGTCTGGAGATGACGGCTGGTCTTCCTaGAGCGGCGTGATGTCGATGACAGAATACGGGTTCACTTTTGTG +
Preference number: 5 (lower is better)
Translates to: PSSSVFASGDDGWSS*SGVMSMTEYGFTFV
Trigger: CACAAAAGTGAACCCGTATTCTGTCATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGAGGAGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 90 bp TGCTCACTGCTGTGTGGAAGGTCCTCGGAGCTTAGGGAATTGCACTaGCCATCTCCCACAGTTTCTGCTGCTTCTTCCTCCTCTACAGAC +
Preference number: 5 (lower is better)
Translates to: CSLLCGRSSELRELH*PSPTVSAASSSSTD
Trigger: GTCTGTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGAGATGGGCAGTGCAATTCCCTAAGCTCCGAGGACCTTCCACACAGCAGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS GCA 90 bp GCTTTTTATGACTGCTGCGCAGGAAGGACCTGGGAATTCCGTTCTTaGCCTCCGAGTCGCTTGGCTCCTCATAGCTTTCGAATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: AFYDCCAGRTWEFRS*PPSRLAPHSFRIRW
Trigger: CCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCAGCAGTCATAAAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 90 bp CCTTGCTCACTGTGTGGAAGGTCCTCGGAGCTTAGGGAATTGCACTaGCCATCTCCCACAGTTTCTGCTGCTTCTTCCTCCTCTACAGAC +
Preference number: 5 (lower is better)
Translates to: PCSLCGRSSELRELH*PSPTVSAASSSSTD
Trigger: GTCTGTAGAGGAGGAAGAAGCAGCAGAAACTGTGGGAGATGGGCAGTGCAATTCCCTAAGCTCCGAGGACCTTCCACACAGTGAGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161162.8
CDS CCA 90 bp TGCTTTTGTAAATGGAAATGCTTCCCTCTTCTGTGCCCAGGCAGATaGTGGGCACATGGGGTGCTCTCGAGGCTGTGGCTTCTGGATCCT +
Preference number: 5 (lower is better)
Translates to: CFCKWKCFPLLCPGR*WAHGVLSRLWLLDP
Trigger: AGGATCCAGAAGCCACAGCCTCGAGAGCACCCCATGTGCCCACCATCTGCCTGGGCACAGAAGAGGGAAGCATTTCCATTTACAAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TCCAAACTCTGCTTCCAGTTGGTCCCGGTGGTGTGGATGCAGCCTCTGTCAGCTCCACTGCTGAGGAGCTaGTTCAGGTATCTCTCGTTT +
Preference number: 5 (lower is better)
Translates to: SKLCFQLVPVVWMQPLSAPLLRS*FRYLSF
Trigger: AAACGAGAGATACCTGAACAAGCTCCTCAGCAGTGG...AGCTGACAGAGGCTGCATCCACACCACCGGGACCAACTGGAAGCAGAGTTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGGGTGTGTCTCCTTCTaGGCTAGGTTGCCATCGTCA +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFGCVSF*ARLPSS
Trigger: TGACGATGGCAACCTAGCCAAGAAGGAGACACACCC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCGGGTGTGTCTCCTTCTaGGCTAGGTTGCCATCGTCA +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFGCVSF*ARLPSS
Trigger: TGACGATGGCAACCTAGCCAAGAAGGAGACACACCC...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTTGAACTCTGGCTGCTaGGCCACCATCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLNSGC*ATITGM
Trigger: CATGCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATTGAACTCTGGCTGCTaGGCCACCATCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGALNSGC*ATITGM
Trigger: CATGCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTTTGGGGTTGGAACCTaGGAAGGAGACAATGGCGAC +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQFGVGT*EGDNGD
Trigger: GTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAAA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGTGGCTTCTGGATCCTaGGTTTCGGTGGTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQVASGS*VSVVSW
Trigger: CCAAGAAACCACCGAAACCAAGGATCCAGAAGCCAC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGACAGGGGCATCAATGTaGACATCCTGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQTGASM*TSCRCF
Trigger: GAAGCACCTGCAGGATGTCAACATTGATGCCCCTGT...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCCCTCCTCTTCGTTGTaGCTGGTGTCACATTTCGCT +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFPSSSL*LVSHFA
Trigger: AGCGAAATGTGACACCAGCAACAACGAAGAGGAGGG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGTCTCCCTCCTCTTCGTaGTTGCTGGTGTCACATTTC +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQSPSSS*LLVSHF
Trigger: GAAATGTGACACCAGCAACAACGAAGAGGAGGGAGA...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTTCGGAGCTTAGGGAATaGCACTGCCCATCTCCCACA +
Preference number: 5 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSSELRE*HCPSPT
Trigger: TGTGGGAGATGGGCAGTGCAATTCCCTAAGCTCCGA...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCTCTTTGGTGCCCTCCTaGGCTGCCTTCATAAGCTTC +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFSLVPS*AAFISF
Trigger: GAAGCTTATGAAGGCAGCCAAGGAGGGCACCAAAGA...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTCTTTGGTGCCCTCCTaGGCTGCCTTCATAAGCTTC +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFSLVPS*AAFISF
Trigger: GAAGCTTATGAAGGCAGCCAAGGAGGGCACCAAAGA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGCCACTGCTGAGGAGCTaGTTCAGGTATCTCTCGTTT +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQPLLRS*FRYLSF
Trigger: AAACGAGAGATACCTGAACAAGCTCCTCAGCAGTGG...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTTGTGTGGCTTCGCGTaGGCCACCACGGCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLCGFA*ATTARL
Trigger: GAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACAA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTCTGACCCAGGACTCCTaGATGGCTGGTGTAAGCGTA +
Preference number: 5 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSLTQDS*MAGVSV
Trigger: TACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAG...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCATCCTTCTTGGCTAGGTaGCCATCGTCATCCACACAG +
Preference number: 5 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGASFLAR*PSSSTQ
Trigger: CTGTGTGGATGACGATGGCAACCTAGCCAAGAAGGA...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTTTGGGGTTGGAACCTaGGAAGGAGACAATGGCGAC +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFFGVGT*EGDNGD
Trigger: GTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAAA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAGTGGCTTCTGGATCCTaGGTTTCGGTGGTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGAVASGS*VSVVSW
Trigger: CCAAGAAACCACCGAAACCAAGGATCCAGAAGCCAC...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCACAGGGGCATCAATGTaGACATCCTGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFTGASM*TSCRCF
Trigger: GAAGCACCTGCAGGATGTCAACATTGATGCCCCTGT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp CGCATCATAAGGCTGTGGAGTGTGACTCGGTCTGGACTGGAATCCTaGCTCAGCTTTAAGAACTCAAGGAAAGCAGGCTTTGTGGCACAC +
Preference number: 5 (lower is better)
Translates to: RIIRLWSVTRSGLES*LSFKNSRKAGFVAH
Trigger: GTGTGCCACAAAGCCTGCTTTCCTTGAGTTCTTAAAGCTGAGCCAGGATTCCAGTCCAGACCGAGTCACACTCCACAGCCTTATGATGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCCTCTTCACAGCAGCTTaGGTTTTCTCCAGCCCATCT +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFLFTAA*VFSSPS
Trigger: AGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGAG...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCTCTTCACAGCAGCTTaGGTTTTCTCCAGCCCATCT +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFLFTAA*VFSSPS
Trigger: AGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGAG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCCCACTGCTGAGGAGCTaGTTCAGGTATCTCTCGTTT +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFPLLRS*FRYLSF
Trigger: AAACGAGAGATACCTGAACAAGCTCCTCAGCAGTGG...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACTGACCCAGGACTCCTaGATGGCTGGTGTAAGCGTA +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKLTQDS*MAGVSV
Trigger: TACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATCCTCAAGGGCCAGCTaGGCCATCTGCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQSSRAS*AICRLL
Trigger: CAGCAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTTCCTTCTTGGCTAGGTaGCCATCGTCATCCACACAG +
Preference number: 5 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSSFLAR*PSSSTQ
Trigger: CTGTGTGGATGACGATGGCAACCTAGCCAAGAAGGA...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp CTCCACTGTCGAAGTCAAACAGTTCTCCCTCCTCTTCGTTGTTGCTaGTGTCACATTTCGCTTCATGTTCTGCAGGAACAGGAGGTGAGG +
Preference number: 5 (lower is better)
Translates to: LHCRSQTVLPPLRCC*CHISLHVLQEQEVR
Trigger: CCTCACCTCCTGTTCCTGCAGAACATGAAGCGAAATGTGACACCAGCAACAACGAAGAGGAGGGAGAACTGTTTGACTTCGACAGTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS-3UTR CAA 90 bp GGACTGGAGCCCACACAGCCAGCTCACTTTATGTATCAGGTGAATGATGGGGCAAATACGGGTTCACTTTaGTGGGGACCACAAGTTTCG +
Preference number: 5 (lower is better)
Translates to: GLEPTQPAHFMYQVNDGANTGSL*WGPQVS
Trigger: CGAAACTTGTGGTCCCCACAAAAGTGAACCCGTATT...TGCCCCATCATTCACCTGATACATAAAGTGAGCTGGCTGTGTGGGCTCCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp GGTGCTATGTTGTTTCCCTGTCAGCTCTCTGAGATGGGACTGGAGCCCACACAGGAACGTCGTCGTAAATaGCTTCCTCTGGATTTTCCA +
Preference number: 5 (lower is better)
Translates to: GAMLFPCQLSEMGLEPTQERRRK*LPLDFP
Trigger: TGGAAAATCCAGAGGAAGCAATTTACGACGACGTTC...CTGTGTGGGCTCCAGTCCCATCTCAGAGAGCTGACAGGGAAACAACATAGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCATAACACCTGTGATCTaGAGAGACCAAGGACCTGGT +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFITPVI*RDQGPG
Trigger: ACCAGGTCCTTGGTCTCTCAAGATCACAGGTGTTAT...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCCAGCACCATGGACTaGGAGAACGAGGCCACAAAA +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSSTMD*ENEATK
Trigger: TTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAACAGGGGCATCAATGTaGACATCCTGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKTGASM*TSCRCF
Trigger: GAAGCACCTGCAGGATGTCAACATTGATGCCCCTGT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGAACGTCGTCGTAAATaGCTTCCTCTGGATTTTCCA +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFERRRK*LPLDFP
Trigger: TGGAAAATCCAGAGGAAGCAATTTACGACGACGTTC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CTCCGTTGTGCGATGGGAGGAAGGCAGGAGAGCAGAGTGACCACAGAATATTTCGCTTTTGCTATTTGTTaGATTTCGCATCGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: LRCAMGGRQESRVTTEYFAFAIC*ISHRWS
Trigger: CGACCAGCGATGCGAAATCAAACAAATAGCAAAAGC...GAAATATTCTGTGGTCACTCTGCTCTCCTGCCTTCCTCCCATCGCACAACGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCGCTTTTGCTATTTGTTaGATTTCGCATCGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFAFAIC*ISHRWS
Trigger: CGACCAGCGATGCGAAATCAAACAAATAGCAAAAGC...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATCGATGACTTTGGGGTaGGAACCTTGGAAGGAGACA +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKSMTLG*EPWKET
Trigger: TGTCTCCTTCCAAGGTTCCAACCCCAAAGTCATCGA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCGGAGCTTAGGGAATaGCACTGCCCATCTCCCACA +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSELRE*HCPSPT
Trigger: TGTGGGAGATGGGCAGTGCAATTCCCTAAGCTCCGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAAATAACACCTGTGATCTaGAGAGACCAAGGACCTGGT +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKITPVI*RDQGPG
Trigger: ACCAGGTCCTTGGTCTCTCAAGATCACAGGTGTTAT...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp AACTGTGTGGATGGCTCTCTGACAGCAGGTGCACAGAAGACCAGAGACACATCTGCTTTTGCTATTTGTTaGATTTCGCATCGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: NCVDGSLTAGAQKTRDTSAFAIC*ISHRWS
Trigger: CGACCAGCGATGCGAAATCAAACAAATAGCAAAAGC...AGATGTGTCTCTGGTCTTCTGTGCACCTGCTGTCAGAGAGCCATCCACACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATTGAACTCTGGCTGCTaGGCCACCATCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQLNSGC*ATITGM
Trigger: CATGCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp AAATCCTCCGGAGAGCATCTACATAGTTCTTCTCGCTCTCAACAATaGAGCCCAGAATGTATCTTCTCACAACCTGCTGCTGAGACAAGC +
Preference number: 5 (lower is better)
Translates to: KSSGEHLHSSSRSQQ*SPECIFSQPAAETS
Trigger: GCTTGTCTCAGCAGCAGGTTGTGAGAAGATACATTCTGGGCTCCATTGTTGAGAGCGAGAAGAACTATGTAGATGCTCTCCGGAGGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCCCTCCTCTTCGTTGTaGCTGGTGTCACATTTCGCT +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLPSSSL*LVSHFA
Trigger: AGCGAAATGTGACACCAGCAACAACGAAGAGGAGGG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCCAGCACCATGGACTaGGAGAACGAGGCCACAAAA +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSSTMD*ENEATK
Trigger: TTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATCCAGCACCATGGACTaGGAGAACGAGGCCACAAAA +
Preference number: 5 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQSSTMD*ENEATK
Trigger: TTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGGA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CACTCCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTATGGCTTTTGCTATTaGTTTGATTTCGCATCGCTG +
Preference number: 5 (lower is better)
Translates to: HSFQKGQADWTGVCYLAFYGFCY*FDFASL
Trigger: CAGCGATGCGAAATCAAACAAATAGCAAAAGCCATA...GAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGGAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAAGTGGCTTCTGGATCCTaGGTTTCGGTGGTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQVASGS*VSVVSW
Trigger: CCAAGAAACCACCGAAACCAAGGATCCAGAAGCCAC...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCTCTCCCTCCTCTTCGTaGTTGCTGGTGTCACATTTC +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLSPSSS*LLVSHF
Trigger: GAAATGTGACACCAGCAACAACGAAGAGGAGGGAGA...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp TTGTTAAAGGGCACAGTACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTCTTCACAGCAGCTTaGGTTTTCTCCAGCCCATCT +
Preference number: 5 (lower is better)
Translates to: LLKGTVHTTVYFGKPWSLLFTAA*VFSSPS
Trigger: AGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGAG...GAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTACTGTGCCCTTTAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp TACACACAACAGTCTACTTTGGAAAGCCTTGGTCACTCCTTCCAAAAAGGGCAATCGATGACTTTGGGGTaGGAACCTTGGAAGGAGACA +
Preference number: 5 (lower is better)
Translates to: YTQQSTLESLGHSFQKGQSMTLG*EPWKET
Trigger: TGTCTCCTTCCAAGGTTCCAACCCCAAAGTCATCGA...TTGCCCTTTTTGGAAGGAGTGACCAAGGCTTTCCAAAGTAGACTGTTGTGTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAACATAAGCTTCTGCATTaGCTTTTTATGACTGCTGCG +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKHKLLH*LFMTAA
Trigger: CGCAGCAGTCATAAAAAGCAAATGCAGAAGCTTATG...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000110800.9
CDS-3UTR CAA 90 bp CCTTCCAAAAAGGGCAAGCTGACTGGACTGGGGTGTGTTACCTGGCTTTCTAAATATGGCTTTTGCTATTaGTTTGATTTCGCATCGCTG +
Preference number: 5 (lower is better)
Translates to: PSKKGKLTGLGCVTWLSKYGFCY*FDFASL
Trigger: CAGCGATGCGAAATCAAACAAATAGCAAAAGCCATA...TTTAGAAAGCCAGGTAACACACCCCAGTCCAGTCAGCTTGCCCTTTTTGGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 90 bp TATCTCTCGTTTATGGCTTTTGCTATTTGTTTGATTTCGCATCGCTaGTCGGCATCTCTTTTTCTCTCGTTTAGCTTCTCTGCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: YLSFMAFAICLISHR*SASLFLSFSFSARV
Trigger: GACCCTGGCAGAGAAGCTAAACGAGAGAAAAAGAGATGCCGACCAGCGATGCGAAATCAAACAAATAGCAAAAGCCATAAACGAGAGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 90 bp GGAGCTTGTTCAGGTATCTCTCGTTTATGGCTTTTGCTATTTGTTTaGTTTCGCATCGCTGGTCGGCATCTCTTTTTCTCTCGTTTAGCT +
Preference number: 5 (lower is better)
Translates to: GACSGISRLWLLLFV*FRIAGRHLFFSRLA
Trigger: AGCTAAACGAGAGAAAAAGAGATGCCGACCAGCGATGCGAAATCAAACAAATAGCAAAAGCCATAAACGAGAGATACCTGAACAAGCTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp TGGCTTCGCGTTGGCCACCACGGCCAGGCTCTCAGGTaGGTGTGCAGCGTGGTGCCGACAGTGCTCCCCGGC +
Preference number: 6 (lower is better)
Translates to: WLRVGHHGQALR*VCSVVPTVLPG
Trigger: GCCGGGGAGCACTGTCGGCACCACGCTGCACACTCACCTGAGAGCCTGGCCGTGGTGGCCAACGCGAAGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp GGCTGCCTGGCCTTCCTGTGCACCCGCCGGTGGCCCTaGCCCCCACATACCACCAGCGCTGAACTGGCTCTT +
Preference number: 6 (lower is better)
Translates to: GCLAFLCTRRWP*PPHTTSAELAL
Trigger: AAGAGCCAGTTCAGCGCTGGTGGTATGTGGGGGCCAGGGCCACCGGCGGGTGCACAGGAAGGCCAGGCAGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp GCAGGGCCACCACGACACCCAGGCTGGTACCGACCATaGGCAAGCCGTGGCAGACGAGCAGGCTGGTCACAG +
Preference number: 6 (lower is better)
Translates to: AGPPRHPGWYRP*ASRGRRAGWSQ
Trigger: CTGTGACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCCTGGGTGTCGTGGTGGCCCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp GGCCATGAACACCTGCCCTCCCGAGGCTGCCCACAGTaGACCCTCCACCAGGAGAAGGCTTCTGACTGGCAG +
Preference number: 6 (lower is better)
Translates to: GHEHLPSRGCPQ*TLHQEKASDWQ
Trigger: CTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp CTCCACGCTGGCCATGAACACCTGCCCTCCCGAGGCTaGCCACAGTGCACCCTCCACCAGGAGAAGGCTTCT +
Preference number: 6 (lower is better)
Translates to: LHAGHEHLPSRG*PQCTLHQEKAS
Trigger: AGAAGCCTTCTCCTGGTGGAGGGTGCACTGTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp GCCCATCGGGCCAGGGCACTGCCTTCTTGGCTGCCTTaGTCACTGCTGTGTGGAAGGTCCTCGGAGCTTAGG +
Preference number: 6 (lower is better)
Translates to: AHRARALPSWLP*SLLCGRSSELR
Trigger: CCTAAGCTCCGAGGACCTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS GCA 72 bp ACAGCAGTGAAGAACGTGGGCCGCCCGGACTTGTCCTaGTTTCCCGGGAGCTGTAACTGGATCCGGCAGCGG +
Preference number: 6 (lower is better)
Translates to: TAVKNVGRPDLS*FPGSCNWIRQR
Trigger: CCGCTGCCGGATCCAGTTACAGCTCCCGGGAAAGCAGGACAAGTCCGGGCGGCCCACGTTCTTCACTGCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CGCCCGGACTTGTCCTGCTTTCCCGGGAGCTGTAACTaGATCCGGCAGCGGTCGGCAGCTCTGATCGCATCT +
Preference number: 6 (lower is better)
Translates to: RPDLSCFPGSCN*IRQRSAALIAS
Trigger: AGATGCGATCAGAGCTGCCGACCGCTGCCGGATCCAGTTACAGCTCCCGGGAAAGCAGGACAAGTCCGGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp GCGCATGGTAGGAGACCATGCCTCGCCCTGTCACTTTaGGGATACCCTGAAGCCGAGGGACTGGCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: AHGRRPCLALSL*GYPEAEGLAGP
Trigger: TGGCCCTGCCAGTCCCTCGGCTTCAGGGTATCCCCAAAGTGACAGGGCGAGGCATGGTCTCCTACCATGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp GGTGTAGCTGGCTACGGACCCATTGACCAGGCCTGCATACAGGCCTaGTGGGGAGCAGGCCAAGCTCATGACCGTGGACTTGTCCGGTGC +
Preference number: 6 (lower is better)
Translates to: GVAGYGPIDQACIQA*WGAGQAHDRGLVRC
Trigger: GCACCGGACAAGTCCACGGTCATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTAGCCAGCTACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CAACCTGCTGCTGAGACAAGCCCTCGGGCATTGGGGTaGGGACAGCCTCCGGGTGCTTGCAGTCCACGTCAA +
Preference number: 6 (lower is better)
Translates to: QPAAETSPRALG*GQPPGACSPRQ
Trigger: TTGACGTGGACTGCAAGCACCCGGAGGCTGTCCTCACCCCAATGCCCGAGGGCTTGTCTCAGCAGCAGGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS TCA 72 bp TTCTCTGCCAGGGTCTCGAGCTCCGTCAGCGCCATCTaGAGGGGCAGCCTGTCAGGATGTCCTTTGGCGGTG +
Preference number: 6 (lower is better)
Translates to: FSARVSSSVSAI*RGSLSGCPLAV
Trigger: CACCGCCAAAGGACATCCTGACAGGCTGCCCCTTCAGATGGCGCTGACGGAGCTCGAGACCCTGGCAGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS GCA 72 bp TGGATTTTCCATCCATGCTGTGTTGGCAGGGTCGGCTaGCCATCGGGCCAGGGCACTGCCTTCTTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: WIFHPCCVGRVG*PSGQGTAFLAA
Trigger: GGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCATGGATGGAAAATCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp CAGGACTGGAGTAGGCAGGCAGCAGCAATGGCAGGTTaGAGGGGACAGCATAGCCACAGGGCACAGGCACAG +
Preference number: 6 (lower is better)
Translates to: QDWSRQAAAMAG*RGQHSHRAQAQ
Trigger: CTGTGCCTGTGCCCTGTGGCTATGCTGTCCCCTCCAACCTGCCATTGCTGCTGCCTGCCTACTCCAGTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp TCTCACAACCTGCTGCTGAGACAAGCCCTCGGGCATTaGGGTGAGGACAGCCTCCGGGTGCTTGCAGTCCAC +
Preference number: 6 (lower is better)
Translates to: SHNLLLRQALGH*GEDSLRVLAVH
Trigger: GTGGACTGCAAGCACCCGGAGGCTGTCCTCACCCCAATGCCCGAGGGCTTGTCTCAGCAGCAGGTTGTGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS CCA 72 bp GCCCTGGCCCCATGTAAACTTTGTGTGGCTTCGCGTTaGCCACCACGGCCAGGCTCTCAGGTGAGTGTGCAG +
Preference number: 6 (lower is better)
Translates to: ALAPCKLCVASR*PPRPGSQVSVQ
Trigger: CTGCACACTCACCTGAGAGCCTGGCCGTGGTGGCCAACGCGAAGCCACACAAAGTTTACATGGGGCCAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CCGTGGCAGACGAGCAGGCTGGTCACAGATAGACGCTaGTGCCCTGGCAGCATGCTATGCACAGGGGCATCA +
Preference number: 6 (lower is better)
Translates to: PWQTSRLVTDRR*CPGSMLCTGAS
Trigger: TGATGCCCCTGTGCATAGCATGCTGCCAGGGCACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp ACGACACCCAGGCTGGTACCGACCATGAGCAAGCCGTaGCAGACGAGCAGGCTGGTCACAGATAGACGCTGG +
Preference number: 6 (lower is better)
Translates to: TTPRLVPTMSKP*QTSRLVTDRRW
Trigger: CCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCACGGCTTGCTCATGGTCGGTACCAGCCTGGGTGTCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CCCCACGCCTTCCTCCTCTGTATTCGCGTCTGGAGATaGCGGCTGGTCTTCCTGCAGCGGCGTGATGTCGAT +
Preference number: 6 (lower is better)
Translates to: PHAFLLCIRVWR*RLVFLQRRDVD
Trigger: ATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGAGGAGGAAGGCGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp TGCCTCGGGGGCAGGTTCAGCTCCAGTTCCATTTCCTaGAGGGCACGTGTTCTCGTCTGCACCTCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: CLGGRFSSSSIS*RARVLVCTSCF
Trigger: GAAGCAGGAGGTGCAGACGAGAACACGTGCCCTGCAGGAAATGGAACTGGAGCTGAACCTGCCCCCGAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp GGGCCAGGGCACTGCCTTCTTGGCTGCCTTGCTCACTaGTGTGTGGAAGGTCCTCGGAGCTTAGGGAATTGC +
Preference number: 6 (lower is better)
Translates to: GPGHCLLGCLAH*CVEGPRSLGNC
Trigger: GCAATTCCCTAAGCTCCGAGGACCTTCCACACAGCAGTGAGCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CAA 72 bp GGCTACGGACCCATTGACCAGGCCTGCATACAGGCCTaGTGGGGAGCAGGCCAAGCTCATGACCGTGGACTT +
Preference number: 6 (lower is better)
Translates to: GYGPIDQACIQA*WGAGQAHDRGL
Trigger: AAGTCCACGGTCATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp CCAGCACCATGGACTTGGAGAACGAGGCCACAAAAACGTCGCCGATaGTTTCCACGACATCCCACTCGGACACGCGGCTGGCCAGCGCAA +
Preference number: 6 (lower is better)
Translates to: PAPWTWRTRPQKRRR*FPRHPTRTRGWPAQ
Trigger: TTGCGCTGGCCAGCCGCGTGTCCGAGTGGGATGTCGTGGAAACAATCGGCGACGTTTTTGTGGCCTCGTTCTCCAAGTCCATGGTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS GCA 72 bp TCAGCACCTCTCGTCCTATCGTCGGCAGACGGGACTTaGCGATCCGCTTCGGGAACTTCATCTCCACTGTCG +
Preference number: 6 (lower is better)
Translates to: SAPLVLSSADGT*RSASGTSSPLS
Trigger: CGACAGTGGAGATGAAGTTCCCGAAGCGGATCGGCAAGTCCCGTCTGCCGACGATAGGACGAGAGGTGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp CTCTTCTGTGCCCAGGCAGATGGTGGGCACATGGGGTaGTCTCGAGGCTGTGGCTTCTGGATCCTTGGTTTC +
Preference number: 6 (lower is better)
Translates to: LFCAQADGGHMG*SRGCGFWILGF
Trigger: GAAACCAAGGATCCAGAAGCCACAGCCTCGAGAGCACCCCATGTGCCCACCATCTGCCTGGGCACAGAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp CTTGGTGTAGCTGGCTACGGACCCATTGACCAGGCCTaGATACAGGCCTTGTGGGGAGCAGGCCAAGCTCAT +
Preference number: 6 (lower is better)
Translates to: LGVAGYGPIDQA*IQALWGAGQAH
Trigger: ATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTAGCCAGCTACACCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp TGGCAGACGAGCAGGCTGGTCACAGATAGACGCTGGTaGCCTGGCAGCATGCTATGCACAGGGGCATCAATG +
Preference number: 6 (lower is better)
Translates to: WQTSRLVTDRRW*PGSMLCTGASM
Trigger: CATTGATGCCCCTGTGCATAGCATGCTGCCAGGGCACCAGCGTCTATCTGTGACCAGCCTGCTCGTCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp GATGATGACAGGACTGGAGTAGGCAGGCAGCAGCAATaGCAGGTTGGAGGGGACAGCATAGCCACAGGGCAC +
Preference number: 6 (lower is better)
Translates to: DDDRTGVGRQQQ*QVGGDSIATGH
Trigger: GTGCCCTGTGGCTATGCTGTCCCCTCCAACCTGCCATTGCTGCTGCCTGCCTACTCCAGTCCTGTCATCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp TACGGACCCATTGACCAGGCCTGCATACAGGCCTTGTaGGGAGCAGGCCAAGCTCATGACCGTGGACTTGTC +
Preference number: 6 (lower is better)
Translates to: YGPIDQACIQAL*GAGQAHDRGLV
Trigger: GACAAGTCCACGGTCATGAGCTTGGCCTGCTCCCCACAAGGCCTGTATGCAGGCCTGGTCAATGGGTCCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp TGCAGGCTGCTGACCCAGGACTCCTTGATGGCTGGTGTAAGCGTATaGAACACAGCAGTGAAGAACGTGGGCCGCCCGGACTTGTCCTGC +
Preference number: 6 (lower is better)
Translates to: CRLLTQDSLMAGVSV*NTAVKNVGRPDLSC
Trigger: GCAGGACAAGTCCGGGCGGCCCACGTTCTTCACTGCTGTGTTCAATACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CCGGAACGTGGGCTGTCCCTGGCTCTGTCCTTGTTTTaGAACGCCGTGGCTGAGACGATGAACTTAACGGGC +
Preference number: 6 (lower is better)
Translates to: PERGLSLALSLF*NAVAETMNLTG
Trigger: GCCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTTCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp GACTGCTGCGCAGGAAGGACCTGGGAATTCCGTTCTTaGCCTCCGAGTCGCTTGGCTCCTCATAGCTTTCGA +
Preference number: 6 (lower is better)
Translates to: DCCAGRTWEFRS*PPSRLAPHSFR
Trigger: TCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCAGCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp ATATGGTTCTCCTCCTCAAGGGCCAGCTTGGCCATCTaGAGGCTGCTGACCCAGGACTCCTTGATGGCTGGT +
Preference number: 6 (lower is better)
Translates to: IWFSSSRASLAI*RLLTQDSLMAG
Trigger: ACCAGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGAGGAGAACCATAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp GGAGCAGGCCAAGCTCATGACCGTGGACTTGTCCGGTaGATAGAAGTGCTGAAGCCTCACCTTCTTGCAGCC +
Preference number: 6 (lower is better)
Translates to: GAGQAHDRGLVR*IEVLKPHLLAA
Trigger: GGCTGCAAGAAGGTGAGGCTTCAGCACTTCTATGCACCGGACAAGTCCACGGTCATGAGCTTGGCCTGCTCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp AAATTGCTTCCTCTGGATTTTCCATCCATGCTGTGTTaGCAGGGTCGGCTGCCCATCGGGCCAGGGCACTGC +
Preference number: 6 (lower is better)
Translates to: KLLPLDFPSMLC*QGRLPIGPGHC
Trigger: GCAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCATGGATGGAAAATCCAGAGGAAGCAATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CAA 72 bp TTCAGCACCTCTCGTCCTATCGTCGGCAGACGGGACTaGCCGATCCGCTTCGGGAACTTCATCTCCACTGTC +
Preference number: 6 (lower is better)
Translates to: FSTSRPIVGRRD*PIRFGNFISTV
Trigger: GACAGTGGAGATGAAGTTCCCGAAGCGGATCGGCAAGTCCCGTCTGCCGACGATAGGACGAGAGGTGCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CAA 72 bp TGGACTTGGAGAACGAGGCCACAAAAACGTCGCCGATaGTTTCCACGACATCCCACTCGGACACGCGGCTGG +
Preference number: 6 (lower is better)
Translates to: WTWRTRPQKRRR*FPRHPTRTRGW
Trigger: CCAGCCGCGTGTCCGAGTGGGATGTCGTGGAAACAATCGGCGACGTTTTTGTGGCCTCGTTCTCCAAGTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS CAA 72 bp CTGACCCAGGACTCCTTGATGGCTGGTGTAAGCGTATaGAACACAGCAGTGAAGAACGTGGGCCGCCCGGAC +
Preference number: 6 (lower is better)
Translates to: LTQDSLMAGVSV*NTAVKNVGRPD
Trigger: GTCCGGGCGGCCCACGTTCTTCACTGCTGTGTTCAATACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp ACCTCCTGCTTCAGCACCTCTCGTCCTATCGTCGGCAGACGGGACTaGCCGATCCGCTTCGGGAACTTCATCTCCACTGTCGAAGTCAAA +
Preference number: 6 (lower is better)
Translates to: TSCFSTSRPIVGRRD*PIRFGNFISTVEVK
Trigger: TTTGACTTCGACAGTGGAGATGAAGTTCCCGAAGCGGATCGGCAAGTCCCGTCTGCCGACGATAGGACGAGAGGTGCTGAAGCAGGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CAA 90 bp TGCGCAGGAAGGACCTGGGAATTCCGTTCTTGCCCTCCGAGTCGCTaGGCTCCTCATAGCTTTCGAATTCGCTGGAACTCCACCCGTACT +
Preference number: 6 (lower is better)
Translates to: CAGRTWEFRSCPPSR*APHSFRIRWNSTRT
Trigger: AGTACGGGTGGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS TCA 72 bp GGAGCTGTAACTGGATCCGGCAGCGGTCGGCAGCTCTaGTCGCATCTTCTTTCCTCAGTATCAGCCGCTGTA +
Preference number: 6 (lower is better)
Translates to: GAVTGSGSGRQL*SHLLSSVSAAV
Trigger: TACAGCGGCTGATACTGAGGAAAGAAGATGCGATCAGAGCTGCCGACCGCTGCCGGATCCAGTTACAGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp AGGCTTCTGACTGGCAGGACACCCAACTTGATCACTTaGTGGGGTTCCGAGTTCCAGGATCCATCTGGAGCC +
Preference number: 6 (lower is better)
Translates to: RLLTGRTPNLIT*WGSEFQDPSGA
Trigger: GGCTCCAGATGGATCCTGGAACTCGGAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp GTCACAGATAGACGCTGGTGCCCTGGCAGCATGCTATaGACAGGGGCATCAATGTTGACATCCTGCAGGTGC +
Preference number: 6 (lower is better)
Translates to: VTDRRWCPGSML*TGASMLTSCRC
Trigger: GCACCTGCAGGATGTCAACATTGATGCCCCTGTGCATAGCATGCTGCCAGGGCACCAGCGTCTATCTGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CCTTCCTCCTCTGTATTCGCGTCTGGAGATGACGGCTaGTCTTCCTGCAGCGGCGTGATGTCGATGACAGAA +
Preference number: 6 (lower is better)
Translates to: PSSSVFASGDDG*SSCSGVMSMTE
Trigger: TTCTGTCATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGAGGAGGAAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp CCGAGTCGCTTGGCTCCTCATAGCTTTCGAATTCGCTaGAACTCCACCCGTACTCTGGGGAGCTGTTTCCAC +
Preference number: 6 (lower is better)
Translates to: PSRLAPHSFRIR*NSTRTLGSCFH
Trigger: GTGGAAACAGCTCCCCAGAGTACGGGTGGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp GCTTTGCCTGCTGAATCTCCATGGCTCCCACCGTACTaGCCACCAAGCCTCTCATCTTTTCCTCACAGTGCG +
Preference number: 6 (lower is better)
Translates to: ALPAESPWLPPY*PPSLSSFPHSA
Trigger: CGCACTGTGAGGAAAAGATGAGAGGCTTGGTGGCCAGTACGGTGGGAGCCATGGAGATTCAGCAGGCAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000161162.8
CDS CCA 72 bp CATGGGGTGCTCTCGAGGCTGTGGCTTCTGGATCCTTaGTTTCGGTGGTTTCTTGGGGCTTTGACTCCTCTG +
Preference number: 6 (lower is better)
Translates to: HGVLSRLWLLDP*FRWFLGALTPL
Trigger: CAGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAAGCCACAGCCTCGAGAGCACCCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp GATCACTTGCTGGGGTTCCGAGTTCCAGGATCCATCTaGAGCCTTGGTGTAGCTGGCTACGGACCCATTGAC +
Preference number: 6 (lower is better)
Translates to: DHLLGFRVPGSI*SLGVAGYGPID
Trigger: GTCAATGGGTCCGTAGCCAGCTACACCAAGGCTCCAGATGGATCCTGGAACTCGGAACCCCAGCAAGTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CATCCTGAAGCTCAGAACCGGAACGTGGGCTGTCCCTaGCTCTGTCCTTGTTTTGAAACGCCGTGGCTGAGA +
Preference number: 6 (lower is better)
Translates to: HPEAQNRNVGCP*LCPCFETPWLR
Trigger: TCTCAGCCACGGCGTTTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAGCTTCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CTGTCCACAGATCTGTGCTCTAGGGAACTGGAGCCATaGGACAGGTTCAGTGACCCCGAGGACGAAGACAGA +
Preference number: 6 (lower is better)
Translates to: LSTDLCSRELEP*DRFSDPEDEDR
Trigger: TCTGTCTTCGTCCTCGGGGTCACTGAACCTGTCCCATGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp GTCCCTGGCTCTGTCCTTGTTTTGAAACGCCGTGGCTaGGACGATGAACTTAACGGGCCCGTTATGCGCATG +
Preference number: 6 (lower is better)
Translates to: VPGSVLVLKRRG*DDELNGPVMRM
Trigger: CATGCGCATAACGGGCCCGTTAAGTTCATCGTCTCAGCCACGGCGTTTCAAAACAAGGACAGAGCCAGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp TCTGTATTCGCGTCTGGAGATGACGGCTGGTCTTCCTaGAGCGGCGTGATGTCGATGACAGAATACGGGTTC +
Preference number: 6 (lower is better)
Translates to: SVFASGDDGWSS*SGVMSMTEYGF
Trigger: GAACCCGTATTCTGTCATCGACATCACGCCGCTGCAGGAAGACCAGCCGTCATCTCCAGACGCGAATACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp CTGTGTGGAAGGTCCTCGGAGCTTAGGGAATTGCACTaGCCATCTCCCACAGTTTCTGCTGCTTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: LCGRSSELRELH*PSPTVSAASSS
Trigger: GGAGGAAGAAGCAGCAGAAACTGTGGGAGATGGGCAGTGCAATTCCCTAAGCTCCGAGGACCTTCCACACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS GCA 72 bp CTTGGAAGGAGACAATGGCGACCTGACCCATCTGGTTaGTACAGCTTCCAATCCACAGAAAGCCACGGGCTG +
Preference number: 6 (lower is better)
Translates to: LGRRQWRPDPSG*YSFQSTESHGL
Trigger: CAGCCCGTGGCTTTCTGTGGATTGGAAGCTGTAGCAACCAGATGGGTCAGGTCGCCATTGTCTCCTTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS GCA 72 bp CTATGCACAGGGGCATCAATGTTGACATCCTGCAGGTaGTTCAAGGTCTCTGTGTGGAAGAGGCGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: LCTGASMLTSCR*FKVSVWKRRRV
Trigger: CACCCTCCGCCTCTTCCACACAGAGACCTTGAAGCACCTGCAGGATGTCAACATTGATGCCCCTGTGCATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp CTCAGCAGGTCACACAGACTGCTGTCCACAGATCTGTaGTCTAGGGAACTGGAGCCATGGGACAGGTTCAGT +
Preference number: 6 (lower is better)
Translates to: LSRSHRLLSTDL*SRELEPWDRFS
Trigger: ACTGAACCTGTCCCATGGCTCCAGTTCCCTAGAGCACAGATCTGTGGACAGCAGTCTGTGTGACCTGCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp GGACCTGGGAATTCCGTTCTTGCCCTCCGAGTCGCTTaGCTCCTCATAGCTTTCGAATTCGCTGGAACTCCA +
Preference number: 6 (lower is better)
Translates to: GPGNSVLALRVA*LLIAFEFAGTP
Trigger: TGGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp CTTCTGACTGGCAGGACACCCAACTTGATCACTTGCTaGGGTTCCGAGTTCCAGGATCCATCTGGAGCCTTG +
Preference number: 6 (lower is better)
Translates to: LLTGRTPNLITC*GSEFQDPSGAL
Trigger: CAAGGCTCCAGATGGATCCTGGAACTCGGAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CTTGGGGTCTTCATCCTGAAGCTCAGAACCGGAACGTaGGCTGTCCCTGGCTCTGTCCTTGTTTTGAAACGC +
Preference number: 6 (lower is better)
Translates to: LGVFILKLRTGT*AVPGSVLVLKR
Trigger: GCGTTTCAAAACAAGGACAGAGCCAGGGACAGCCCACGTTCCGGTTCTGAGCTTCAGGATGAAGACCCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp AGGACCTGGGAATTCCGTTCTTGCCCTCCGAGTCGCTaGGCTCCTCATAGCTTTCGAATTCGCTGGAACTCC +
Preference number: 6 (lower is better)
Translates to: RTWEFRSCPPSR*APHSFRIRWNS
Trigger: GGAGTTCCAGCGAATTCGAAAGCTATGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CAA 72 bp GTCCTGATGAAGGAGCCGCCTCTCTTCACAGCAGCTTaGGTTTTCTCCAGCCCATCTTTGGTGCCCTCCTTG +
Preference number: 6 (lower is better)
Translates to: VLMKEPPLFTAA*VFSSPSLVPSL
Trigger: CAAGGAGGGCACCAAAGATGGGCTGGAGAAAACCAAAGCTGCTGTGAAGAGAGGCGGCTCCTTCATCAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS CAA 72 bp ACATGGGGTGCTCTCGAGGCTGTGGCTTCTGGATCCTaGGTTTCGGTGGTTTCTTGGGGCTTTGACTCCTCT +
Preference number: 6 (lower is better)
Translates to: TWGALEAVASGS*VSVVSWGFDSS
Trigger: AGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAAGCCACAGCCTCGAGAGCACCCCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp AAGGCTTCTGACTGGCAGGACACCCAACTTGATCACTaGCTGGGGTTCCGAGTTCCAGGATCCATCTGGAGC +
Preference number: 6 (lower is better)
Translates to: KASDWQDTQLDH*LGFRVPGSIWS
Trigger: GCTCCAGATGGATCCTGGAACTCGGAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp ACCAGGAGAAGGCTTCTGACTGGCAGGACACCCAACTaGATCACTTGCTGGGGTTCCGAGTTCCAGGATCCA +
Preference number: 6 (lower is better)
Translates to: TRRRLLTGRTPN*ITCWGSEFQDP
Trigger: TGGATCCTGGAACTCGGAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAGCCTTCTCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp TGCCCTGGCAGCATGCTATGCACAGGGGCATCAATGTaGACATCCTGCAGGTGCTTCAAGGTCTCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: CPGSMLCTGASM*TSCRCFKVSVW
Trigger: CCACACAGAGACCTTGAAGCACCTGCAGGATGTCAACATTGATGCCCCTGTGCATAGCATGCTGCCAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp GGCGGTGGCACACATGAGCACGTCATTCAGCATGAAGATCCGGCGTaGTTTGGTCTTGACGATTTCTCCCCGGTCGTTGTAAACCGTCTC +
Preference number: 6 (lower is better)
Translates to: GGGTHEHVIQHEDPA*FGLDDFSPVVVNRL
Trigger: GAGACGGTTTACAACGACCGGGGAGAAATCGTCAAGACCAAACAACGCCGGATCTTCATGCTGAATGACGTGCTCATGTGTGCCACCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CGTCATCGGACCGGACGAGGTACCGGTTTCCACTGCTaGGGAGCTTGTTCAGGTATCTCTCGTTTATGGCTT +
Preference number: 6 (lower is better)
Translates to: RHRTGRGTGFHC*GACSGISRLWL
Trigger: AAGCCATAAACGAGAGATACCTGAACAAGCTCCTCAGCAGTGGAAACCGGTACCTCGTCCGGTCCGATGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CGACCTGACCCATCTGGTTGCTACAGCTTCCAATCTTaGACTCTGGCTGCTTGGCCACCATCACAGGCATGT +
Preference number: 6 (lower is better)
Translates to: RPDPSGCYSFQS*TLAAWPPSQAC
Trigger: ACATGCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAAGATTGGAAGCTGTAGCAACCAGATGGGTCAGGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163062.2
CDS CCA 72 bp AGAGTTGCTTTTTATGACTGCTGCGCAGGAAGGACCTaGGAATTCCGTTCTTGCCCTCCGAGTCGCTTGGCT +
Preference number: 6 (lower is better)
Translates to: RVAFYDCCAGRT*EFRSCPPSRLA
Trigger: AGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCAGCAGTCATAAAAAGCAACTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000161162.8
CDS CCA 72 bp GCATTTGCTTTTTATGACTGCTGCGCAGGAAGGACCTaGGAATTCCGTTCTTGCCCTCCGAGTCGCTTGGCT +
Preference number: 6 (lower is better)
Translates to: AFAFYDCCAGRT*EFRSCPPSRLA
Trigger: AGCCAAGCGACTCGGAGGGCAAGAACGGAATTCCCAGGTCCTTCCTGCGCAGCAGTCATAAAAAGCAAATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110800.9
CDS CCA 72 bp ACCCATCTGGTTGCTACAGCTTCCAATCTTGAACTCTaGCTGCTTGGCCACCATCACAGGCATGTGTCCCAC +
Preference number: 6 (lower is better)
Translates to: THLVATASNLEL*LLGHHHRHVSH
Trigger: GTGGGACACATGCCTGTGATGGTGGCCAAGCAGCCAGAGTTCAAGATTGGAAGCTGTAGCAACCAGATGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163062.2
CDS CAA 90 bp CATCTGGCTCAGAGTCCGAGTTTTCCCTCGGAACGTCGTCGTAAATaGCTTCCTCTGGATTTTCCATCCATGCTGTGTTGGCAGGGTCGG +
Preference number: 6 (lower is better)
Translates to: HLAQSPSFPSERRRK*LPLDFPSMLCWQGR
Trigger: CCGACCCTGCCAACACAGCATGGATGGAAAATCCAGAGGAAGCAATTTACGACGACGTTCCGAGGGAAAACTCGGACTCTGAGCCAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS TCA 72 bp TTGGGGTTGGAACCTTGGAAGGAGACAATGGCGACCTaGCCCATCTGGTTGCTACAGCTTCCAATCCACAGA +
Preference number: 6 (lower is better)
Translates to: LGLEPWKETMAT*PIWLLQLPIHR
Trigger: TCTGTGGATTGGAAGCTGTAGCAACCAGATGGGTCAGGTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CCA 72 bp CATCTGCAGGCTGCTGACCCAGGACTCCTTGATGGCTaGTGTAAGCGTATTGAACACAGCAGTGAAGAACGT +
Preference number: 6 (lower is better)
Translates to: HLQAADPGLLDG*CKRIEHSSEER
Trigger: ACGTTCTTCACTGCTGTGTTCAATACGCTTACACCAGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp AGGCTGTGGCTTCTGGATCCTTGGTTTCGGTGGTTTCTTGGGGCTTaGACTCCTCTGCGGGAATGTATACCATACACAGGATGCGTGATT +
Preference number: 6 (lower is better)
Translates to: RLWLLDPWFRWFLGA*TPLRECIPYTGCVI
Trigger: AATCACGCATCCTGTGTATGGTATACATTCCCGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAAGCCACAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp TTGGGGTTGGAACCTTGGAAGGAGACAATGGCGACCTaGCCCATCTGGTTGCTACAGCTTCCAATCTTGAAC +
Preference number: 6 (lower is better)
Translates to: LGLEPWKETMAT*PIWLLQLPILN
Trigger: GTTCAAGATTGGAAGCTGTAGCAACCAGATGGGTCAGGTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163062.2
CDS GCA 72 bp CACGGGCTGTGGAGGGTGAGGCTGGTTGACTTTCATTaGTCAGGTAAGGTTCAGGGTTATAAGCTGCACATT +
Preference number: 6 (lower is better)
Translates to: HGLWRVRLVDFH*SGKVQGYKLHI
Trigger: AATGTGCAGCTTATAACCCTGAACCTTACCTGAGCAATGAAAGTCAACCAGCCTCACCCTCCACAGCCCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CCA 72 bp GCTGTGGCTTCTGGATCCTTGGTTTCGGTGGTTTCTTaGGGCTTTGACTCCTCTGCGGGAATGTATACCATA +
Preference number: 6 (lower is better)
Translates to: AVASGSLVSVVS*GFDSSAGMYTI
Trigger: TATGGTATACATTCCCGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAAGCCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp AGGATGCGTGATTCCACATTGAAGCACTCGATGACTTaGGGGTTGGAACCTTGGAAGGAGACAATGGCGACC +
Preference number: 6 (lower is better)
Translates to: RMRDSTLKHSMT*GLEPWKETMAT
Trigger: GGTCGCCATTGTCTCCTTCCAAGGTTCCAACCCCAAAGTCATCGAGTGCTTCAATGTGGAATCACGCATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp GTGACCCCGAGGACGAAGACAGATCATTCTTTTGAGTaGGCAATCCTAGGGAGTCTCCCAACCAAACGGATG +
Preference number: 6 (lower is better)
Translates to: VTPRTKTDHSFE*AILGSLPTKRM
Trigger: CATCCGTTTGGTTGGGAGACTCCCTAGGATTGCCAACTCAAAAGAATGATCTGTCTTCGTCCTCGGGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp ACAGGTTCAGTGACCCCGAGGACGAAGACAGATCATTCTTTTGAGTaGGCAATCCTAGGGAGTCTCCCAACCAAACGGATGTGTAGGTGT +
Preference number: 6 (lower is better)
Translates to: TGSVTPRTKTDHSFE*AILGSLPTKRMCRC
Trigger: ACACCTACACATCCGTTTGGTTGGGAGACTCCCTAGGATTGCCAACTCAAAAGAATGATCTGTCTTCGTCCTCGGGGTCACTGAACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 72 bp CTTCTGGATCCTTGGTTTCGGTGGTTTCTTGGGGCTTaGACTCCTCTGCGGGAATGTATACCATACACAGGA +
Preference number: 6 (lower is better)
Translates to: LLDPWFRWFLGA*TPLRECIPYTG
Trigger: TCCTGTGTATGGTATACATTCCCGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CAA 90 bp TCCTCTGCGGGAATGTATACCATACACAGGATGCGTGATTCCACATaGAAGCACTCGATGACTTTGGGGTTGGAACCTTGGAAGGAGACA +
Preference number: 6 (lower is better)
Translates to: SSAGMYTIHRMRDST*KHSMTLGLEPWKET
Trigger: TGTCTCCTTCCAAGGTTCCAACCCCAAAGTCATCGAGTGCTTCAATGTGGAATCACGCATCCTGTGTATGGTATACATTCCCGCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp CTCCTCTGCGGGAATGTATACCATACACAGGATGCGTaGTTCCACATTGAAGCACTCGATGACTTTGGGGTT +
Preference number: 6 (lower is better)
Translates to: LLCGNVYHTQDA*FHIEALDDFGV
Trigger: AACCCCAAAGTCATCGAGTGCTTCAATGTGGAATCACGCATCCTGTGTATGGTATACATTCCCGCAGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS TCA 72 bp TTCTGGATCCTTGGTTTCGGTGGTTTCTTGGGGCTTTaGCTCCTCTGCGGGAATGTATACCATACACAGGAT +
Preference number: 6 (lower is better)
Translates to: FWILGFGGFLGL*LLCGNVYHTQD
Trigger: ATCCTGTGTATGGTATACATTCCCGCAGAGGAGTCAAAGCCCCAAGAAACCACCGAAACCAAGGATCCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp TGTCCGGTGCATAGAAGTGCTGAAGCCTCACCTTCTTaGAGCCCTGACTGCTTTTGTAAATGGAAATGCTTC +
Preference number: 6 (lower is better)
Translates to: CPVHRSAEASPS*SPDCFCKWKCF
Trigger: GAAGCATTTCCATTTACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTTCAGCACTTCTATGCACCGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp CGAAGTCAAACAGTTCTCCCTCCTCTTCGTTGTTGCTaGTGTCACATTTCGCTTCATGTTCTGCAGGAACAG +
Preference number: 6 (lower is better)
Translates to: RSQTVLPPLRCC*CHISLHVLQEQ
Trigger: CTGTTCCTGCAGAACATGAAGCGAAATGTGACACCAGCAACAACGAAGAGGAGGGAGAACTGTTTGACTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CAA 90 bp ACTTCATCTCCACTGTCGAAGTCAAACAGTTCTCCCTCCTCTTCGTaGTTGCTGGTGTCACATTTCGCTTCATGTTCTGCAGGAACAGGA +
Preference number: 6 (lower is better)
Translates to: TSSPLSKSNSSPSSS*LLVSHFASCSAGTG
Trigger: TCCTGTTCCTGCAGAACATGAAGCGAAATGTGACACCAGCAACAACGAAGAGGAGGGAGAACTGTTTGACTTCGACAGTGGAGATGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
CDS CCA 72 bp GGAGAGCATCTACATAGTTCTTCTCGCTCTCAACAATaGAGCCCAGAATGTATCTTCTCACAACCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: GEHLHSSSRSQQ*SPECIFSQPAA
Trigger: AGCAGCAGGTTGTGAGAAGATACATTCTGGGCTCCATTGTTGAGAGCGAGAAGAACTATGTAGATGCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000161162.8
ENSMUST00000163062.2
CDS CAA 72 bp GGAATGTATACCATACACAGGATGCGTGATTCCACATaGAAGCACTCGATGACTTTGGGGTTGGAACCTTGG +
Preference number: 6 (lower is better)
Translates to: GMYTIHRMRDST*KHSMTLGLEPW
Trigger: CCAAGGTTCCAACCCCAAAGTCATCGAGTGCTTCAATGTGGAATCACGCATCCTGTGTATGGTATACATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS GCA 72 bp ACTTTCATTGCTCAGGTAAGGTTCAGGGTTATAAGCTaGACATTCAATCTTGAACTCTGGCTGCTTGGCCAC +
Preference number: 6 (lower is better)
Translates to: TFIAQVRFRVIS*TFNLELWLLGH
Trigger: GTGGCCAAGCAGCCAGAGTTCAAGATTGAATGTGCAGCTTATAACCCTGAACCTTACCTGAGCAATGAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
CDS CAA 90 bp AGGAGCTTGTTCAGGTATCTCTCGTTTATGGCTTTTGCTATTTGTTaGATTTCGCATCGCTGGTCGGCATCTCTTTTTCTCTCGTTTAGC +
Preference number: 6 (lower is better)
Translates to: RSLFRYLSFMAFAIC*ISHRWSASLFLSFS
Trigger: GCTAAACGAGAGAAAAAGAGATGCCGACCAGCGATGCGAAATCAAACAAATAGCAAAAGCCATAAACGAGAGATACCTGAACAAGCTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2
CDS CCA 72 bp TTTATGGCTTTTGCTATTTGTTTGATTTCGCATCGCTaGTCGGCATCTCTTTTTCTCTCGTTTAGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: FMAFAICLISHR*SASLFLSFSFS
Trigger: AGAGAAGCTAAACGAGAGAAAAAGAGATGCCGACCAGCGATGCGAAATCAAACAAATAGCAAAAGCCATAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084207.12
ENSMUST00000110800.9
ENSMUST00000163062.2