RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGAP26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036452, ENSMUSG00000118193

Ensembl transcript IDs: ENSMUST00000097593.9, ENSMUST00000137497.9, ENSMUST00000141058.8, ENSMUST00000148850.8, ENSMUST00000151757.8, ENSMUST00000154551.8, ENSMUST00000155576.8, ENSMUST00000235660.2

Found 497 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTaGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGCTGGAG +
Preference number: 1 (lower is better)
Translates to: KTVPAVKESSESCSA*QAYKAFAFRNGVLE
Trigger: CTCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR GCA 90 bp GGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTaGCTTCCGGAATGGTGTGCTGGAGTCTTCACGGACCGCTTCTTC +
Preference number: 1 (lower is better)
Translates to: GELRVVLSLAGVQSL*LPEWCAGVFTDRFF
Trigger: GAAGAAGCGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR CCA 90 bp AGACACGTGCTGTGGGCGGCAAAGGGAAGAAGGCCCGTCATCGCCTaGTGGAGTCTTGTCTCAGCATGTTGGAGGCATGTCCAAGGTTCA +
Preference number: 1 (lower is better)
Translates to: RHVLWAAKGRRPVIA*WSLVSACWRHVQGS
Trigger: TGAACCTTGGACATGCCTCCAACATGCTGAGACAAGACTCCACCAGGCGATGACGGGCCTTCTTCCCTTTGCCGCCCACAGCACGTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp CAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTaGAGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAG +
Preference number: 1 (lower is better)
Translates to: QAPEMDEHYRRRCPL*RRAPSRAQLGRRTK
Trigger: CTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR GCA 90 bp ACATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTaGTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGT +
Preference number: 1 (lower is better)
Translates to: TLSKTVPAVKESSES*SAWQAYKAFAFRNG
Trigger: ACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR CCA 90 bp ACAGAGCGACCATCTGTCATAGGCCACACATGGCCTCAGGGAAACTaGAAGGAGGTCAGCCTAAGAGAGCAGTTTCAAACCAGGGCCAGC +
Preference number: 1 (lower is better)
Translates to: TERPSVIGHTWPQGN*KEVSLREQFQTRAS
Trigger: GCTGGCCCTGGTTTGAAACTGCTCTCTTAGGCTGACCTCCTTCCAGTTTCCCTGAGGCCATGTGTGGCCTATGACAGATGGTCGCTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 90 bp GGAAGAAGGCCCGTCATCGCCTGGTGGAGTCTTGTCTCAGCATGTTaGAGGCATGTCCAAGGTTCAGTCCCAGCTCTCTGCTGTTGTCAT +
Preference number: 1 (lower is better)
Translates to: GRRPVIAWWSLVSAC*RHVQGSVPALCCCH
Trigger: ATGACAACAGCAGAGAGCTGGGACTGAACCTTGGACATGCCTCCAACATGCTGAGACAAGACTCCACCAGGCGATGACGGGCCTTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp GTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGTGGCAATaGAAAGTGGCCCACAACACCAGAAGCAGCAGTTGTCATGGAGAC +
Preference number: 1 (lower is better)
Translates to: VGRKQQSGSLLSQWQ*KVAHNTRSSSCHGD
Trigger: GTCTCCATGACAACTGCTGCTTCTGGTGTTGTGGGCCACTTTTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 90 bp TGGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTaGAGACAGACCCAGCTGCCTGTAGCACTGTGTCTCTGGGAGAAG +
Preference number: 1 (lower is better)
Translates to: WTIYKQCGNPFILCA*RQTQLPVALCLWEK
Trigger: CTTCTCCCAGAGACACAGTGCTACAGGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 90 bp GGAATAGGTCTGGAACCTGAGTGTACTGCCTTTCTTCCTTCCGTTTaGAACCCTCCTCCAGCCTCACATCTGGCTGGCGTAAGTCTTCAG +
Preference number: 1 (lower is better)
Translates to: GIGLEPECTAFLPSV*NPPPASHLAGVSLQ
Trigger: CTGAAGACTTACGCCAGCCAGATGTGAGGCTGGAGGAGGGTTGCAAACGGAAGGAAGAAAGGCAGTACACTCAGGTTCCAGACCTATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp CATCACACCCAGCATTGTCAGTTTGGAATCCTGTGTTTGCCTGACTaGAAGTTCAAGTCTCCCTTGCTCCTGGCTGGGTCCTTGGTTGGC +
Preference number: 1 (lower is better)
Translates to: HHTQHCQFGILCLPD*KFKSPLLLAGSLVG
Trigger: GCCAACCAAGGACCCAGCCAGGAGCAAGGGAGACTTGAACTTTCAGTCAGGCAAACACAGGATTCCAAACTGACAATGCTGGGTGTGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp GAGCCATCACACCCAGCATTGTCAGTTTGGAATCCTGTGTTTGCCTaGCTGAAAGTTCAAGTCTCCCTTGCTCCTGGCTGGGTCCTTGGT +
Preference number: 1 (lower is better)
Translates to: EPSHPALSVWNPVFA*LKVQVSLAPGWVLG
Trigger: ACCAAGGACCCAGCCAGGAGCAAGGGAGACTTGAACTTTCAGTCAGGCAAACACAGGATTCCAAACTGACAATGCTGGGTGTGATGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 90 bp AGGGTGGCTCACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTATaGTTTCCTTCCATGAGTACAGGGCTGCCTCCGAGTGACGTCTGG +
Preference number: 1 (lower is better)
Translates to: RVAHLSFLIRVFLYL*FPSMSTGLPPSDVW
Trigger: CCAGACGTCACTCGGAGGCAGCCCTGTACTCATGGAAGGAAAGCATAGATATAAAAACACCCGGATCAGGAAGGAAAGGTGAGCCACCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 90 bp ATGATCATGGAGAATGGTGGCACACGTTCCCAGATGCATTTGTGTTaGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGTGGCAATG +
Preference number: 1 (lower is better)
Translates to: MIMENGGTRSQMHLC*QEATVGLPAFSVAM
Trigger: CATTGCCACTGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGTGTGCCACCATTCTCCATGATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 90 bp ATTGCCCAACCTTTTCTCAAGCTCACAGGGAATAGGTCTGGAACCTaGGTGTACTGCCTTTCTTCCTTCCGTTTGCAACCCTCCTCCAGC +
Preference number: 1 (lower is better)
Translates to: IAQPFLKLTGNRSGT*VYCLSSFRLQPSSS
Trigger: GCTGGAGGAGGGTTGCAAACGGAAGGAAGAAAGGCAGTACACTCAGGTTCCAGACCTATTCCCTGTGAGCTTGAGAAAAGGTTGGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 90 bp ACAGCTGCTCAAGAGATGGTGAGAGATTGGACCATATATAAACAGTaGGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGACCCAGCTG +
Preference number: 1 (lower is better)
Translates to: TAAQEMVRDWTIYKQ*GNPFILCACRQTQL
Trigger: CAGCTGGGTCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCACCATCTCTTGAGCAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 90 bp GTTCCTTCCTACTTGGCTCATATTAATCTCTCCAGTTCTTTTTCCTaGGGAGGACGAGGAGGAGGAATAGGAGGGAGGCCTAGCTGGACA +
Preference number: 1 (lower is better)
Translates to: VPSYLAHINLSSSFS*GGRGGGIGGRPSWT
Trigger: TGTCCAGCTAGGCCTCCCTCCTATTCCTCCTCCTCGTCCTCCTCAGGAAAAAGAACTGGAGAGATTAATATGAGCCAAGTAGGAAGGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 90 bp ATGCCAGCTTGTGTGTGTGTGTCTACACCCGAGGCGGCACCTTTATaGTTGTATGTGCTATGTACGAACACATACACACCAACACACGCA +
Preference number: 1 (lower is better)
Translates to: MPACVCVSTPEAAPL*LYVLCTNTYTPTHA
Trigger: TGCGTGTGTTGGTGTGTATGTGTTCGTACATAGCACATACAAGCATAAAGGTGCCGCCTCGGGTGTAGACACACACACACAAGCTGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR TCA 90 bp GGCTGTTGGGACAGGGCTATCAACGTAAGTGATCACTGTCAAGTTTaGCAGAATTGGCAGACAACTCCCTTCCTAGACAGCCAGAACATT +
Preference number: 1 (lower is better)
Translates to: GCWDRAINVSDHCQV*QNWQTTPFLDSQNI
Trigger: AATGTTCTGGCTGTCTAGGAAGGGAGTTGTCTGCCAATTCTGTCAAACTTGACAGTGATCACTTACGTTGATAGCCCTGTCCCAACAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 90 bp GAGAAGACAGCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATaGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATTACTGT +
Preference number: 1 (lower is better)
Translates to: EKTALQAFLWVIKIQ*PPLLIAVQFLQHYC
Trigger: ACAGTAATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CCA 90 bp TCTGCTGATTATAGGCCAACAGCTGCTCAAGAGATGGTGAGAGATTaGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCT +
Preference number: 1 (lower is better)
Translates to: SADYRPTAAQEMVRD*TIYKQCGNPFILCA
Trigger: AGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCACCATCTCTTGAGCAGCTGTTGGCCTATAATCAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 90 bp GAGGCATGTCCAAGGTTCAGTCCCAGCTCTCTGCTGTTGTCATTTTaGTACTACATTCACAGACAAACACTAGATCTGCATGGGTGCAGA +
Preference number: 1 (lower is better)
Translates to: EACPRFSPSSLLLSF*YYIHRQTLDLHGCR
Trigger: TCTGCACCCATGCAGATCTAGTGTTTGTCTGTGAATGTAGTATCAAAATGACAACAGCAGAGAGCTGGGACTGAACCTTGGACATGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp TCTTTTGAACTCCAAAGCCCCAAATCACATGTAGATAAAGACAACTaGATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGG +
Preference number: 1 (lower is better)
Translates to: SFELQSPKSHVDKDN*MQPTFQAHQQEPLR
Trigger: CCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATTCAGTTGTCTTTATCTACATGTGATTTGGGGCTTTGGAGTTCAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 90 bp AGCTCCTGGGAAATCTTTGGGACTCTGGTCAATGAACTTCCATTCTaGTATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTT +
Preference number: 1 (lower is better)
Translates to: SSWEIFGTLVNELPF*YQLIPHDLPQFSLF
Trigger: AAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATGGAAGTTCATTGACCAGAGTCCCAAAGATTTCCCAGGAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 90 bp CAGAAAGGGCACATAACACTTTTAATCTTCAAGTTCCTTCCTACTTaGCTCATATTAATCTCTCCAGTTCTTTTTCCTGAGGAGGACGAG +
Preference number: 1 (lower is better)
Translates to: QKGHITLLIFKFLPT*LILISPVLFPEEDE
Trigger: CTCGTCCTCCTCAGGAAAAAGAACTGGAGAGATTAATATGAGCCAAGTAGGAAGGAACTTGAAGATTAAAAGTGTTATGTGCCCTTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 90 bp AAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTTCATTTATTATaGGGCAGGCGACAATTTAAACCATCAGATATATTAAAAGTATCA +
Preference number: 1 (lower is better)
Translates to: KQSCWALTTSIVHLL*GRRQFKPSDILKVS
Trigger: TGATACTTTTAATATATCTGATGGTTTAAATTGTCGCCTGCCCCATAATAAATGAACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTCAGCCAGCATGGCTCTaGCTCACCAGTGCCCAGTTG +
Preference number: 2 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLAQPAWL*LTSAQL
Trigger: CAACTGGGCACTGGTGAGCCAGAGCCATGCTGGCTG...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp GAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTaGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGCTGGA +
Preference number: 2 (lower is better)
Translates to: EDGARCEGELRVVLS*AGVQSLCLPEWCAG
Trigger: TCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR-3UTR CCA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTCCCAACCAGCCAGCATaGCTCTGGCTCACCAGTGCC +
Preference number: 2 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCPNQPA*LWLTSA
Trigger: GGCACTGGTGAGCCAGAGCCATGCTGGCTGGTTGGG...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp AGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTaGCCTTCCGGAATGGTGTGCTGGAGTCTTCACGGACCGCTTCTT +
Preference number: 2 (lower is better)
Translates to: RRAPSRAQLGRRTKP*PSGMVCWSLHGPLL
Trigger: AAGAAGCGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR-3UTR TCA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAGTCATGGAGACCACGTaGAGCTCAGCAGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: GGRPSWTKGNRATICHRPVMETT*SSAAPL
Trigger: CAGTGGAGCTGCTGAGCTTCACGTGGTCTCCATGAC...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCACAGCGGCAGAGAACGTaGGGGGCGTGTGTTTCTTTG +
Preference number: 2 (lower is better)
Translates to: GGRPSWTKGNRATICHRPQRQRT*GACVSL
Trigger: CAAAGAAACACACGCCCCTCACGTTCTCTGCCGCTG...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp TGTCTACTAAGAACAGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCGCAGCCTGCACCTTGTaGCAGTTTCTTTGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: CLLRTVGARANVWSLVHPAACTL*QFLCPA
Trigger: GGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGC...GGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACTGTTCTTAGTAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp TCTCCCTTGCTCCTGGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGGCAGCCTGCACCTTGTaGCAGTTTCTTTGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: SPLLLAGSLVGNSIILSWAACTL*QFLCPA
Trigger: GGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGC...CCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCCAGGAGCAAGGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTGAAACTCAAAGCTCCTaGGAAATCTTTGGGACTCTG +
Preference number: 2 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLAETQSS*EIFGTL
Trigger: CAGAGTCCCAAAGATTTCCCAGGAGCTTTGAGTTTC...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp CTCCAACCAGCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCCTTTGCCTTCCGGAATaGTGTGCTGGAGTCTTCACG +
Preference number: 2 (lower is better)
Translates to: LQPARLLRWMNIIEDGARLCLPE*CAGVFT
Trigger: CGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAG...GCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGCTGGTTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR-3UTR TCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAAAATGGCCTCCTCTGCTaGTTGCTGTGCAGTTCTTGC +
Preference number: 2 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQNGLLC*LLCSSC
Trigger: GCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATT...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGCCAGTTTCTTTGCCCTaGCTCTTCCAACTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGPVSLP*LFQLSS
Trigger: GCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACTGG...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp GCTGAGATGATCATGGAGAATGGTGGCACACGTTCCCAGATGCATTaGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGTG +
Preference number: 2 (lower is better)
Translates to: AEMIMENGGTRSQMH*CWQEATVGLPAFSV
Trigger: CACTGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGTGTGCCACCATTCTCCATGATCATCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 90 bp ACCCTAAGGGAATTCCAGGAGCCTGAGACACTCTCTGGTGCAACGTaGCCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAG +
Preference number: 2 (lower is better)
Translates to: TLREFQEPETLSGAT*PSERLLESVTVCPE
Trigger: CTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGGCAACGTTGCACCAGAGAGTGTCTCAGGCTCCTGGAATTCCCTTAGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTCCTCTGCTaGTTGCTGTGCAGTTCTTGC +
Preference number: 2 (lower is better)
Translates to: EGTQPSLQASTFGVLQILNGLLC*LLCSSC
Trigger: GCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATT...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAAACAGTCGGGCTCCCTaGTTTCTCAGTGGCAATGAA +
Preference number: 2 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLNSRAP*FLSGNE
Trigger: TTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTT...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGAACAGTCGGGCTCCCTaGTTTCTCAGTGGCAATGAA +
Preference number: 2 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGNSRAP*FLSGNE
Trigger: TTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTT...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTCCAGTTTCTTTGCCCTaGCTCTTCCAACTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: EGTQPSLQASTFGVLQILPVSLP*LFQLSS
Trigger: GCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACTGG...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAAAGCAGCAGTTGTCATaGAGACCACGTGAAGCTCAG +
Preference number: 2 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLKQQLS*RPREAQ
Trigger: CTGAGCTTCACGTGGTCTCCATGACAACTGCTGCTT...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGCAGATGCATTTGTGTTaGCAGGAAGCAACAGTCGGG +
Preference number: 2 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGQMHLC*QEATVG
Trigger: CCCGACTGTTGCTTCCTGCCAACACAAATGCATCTG...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp CGCCCTCACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTTGGTCATGGAGACCACGTaGAGCTCAGCAGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: RPHPTYLNPEILSVTLLLVMETT*SSAAPL
Trigger: CAGTGGAGCTGCTGAGCTTCACGTGGTCTCCATGAC...CAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTGAGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTTGCTGTAAGCTGAGATaGTCATGGAGAATGGTGGCA +
Preference number: 2 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCCCKLR*SWRMVA
Trigger: TGCCACCATTCTCCATGATCATCTCAGCTTACAGCA...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTATGCTGTAAGCTGAGATaGTCATGGAGAATGGTGGCA +
Preference number: 2 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLCCKLR*SWRMVA
Trigger: TGCCACCATTCTCCATGATCATCTCAGCTTACAGCA...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAAGTAAAGTTCACCAATaGCCAAGAACCACAGCAGCT +
Preference number: 2 (lower is better)
Translates to: GGRPSWTKGNRATICHRPSKVHQ*PRTTAA
Trigger: AGCTGCTGTGGTTCTTGGTCATTGGTGAACTTTACT...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGAAACAGTCGGGCTCCCTaGTTTCTCAGTGGCAATGAA +
Preference number: 2 (lower is better)
Translates to: SLKVPSLASRPQHLASYRNSRAP*FLSGNE
Trigger: TTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTT...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACCCCTTCATCCTGTGTaGTTGCAGACAGACCCAGCT +
Preference number: 2 (lower is better)
Translates to: PSERLLESVTVCPESLYQPLHPV*LQTDPA
Trigger: AGCTGGGTCTGTCTGCAAGCACACAGGATGAAGGGG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTAAGCAGCAGTTGTCATaGAGACCACGTGAAGCTCAG +
Preference number: 2 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFKQQLS*RPREAQ
Trigger: CTGAGCTTCACGTGGTCTCCATGACAACTGCTGCTT...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGAAAGCAGCAGTTGTCATaGAGACCACGTGAAGCTCAG +
Preference number: 2 (lower is better)
Translates to: SLKVPSLASRPQHLASYRKQQLS*RPREAQ
Trigger: CTGAGCTTCACGTGGTCTCCATGACAACTGCTGCTT...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp TGTCTACTAAGAACAGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCAGTGGCAATGAAAAGTaGCCCACAACACCAGAAGCA +
Preference number: 2 (lower is better)
Translates to: CLLRTVGARANVWSLVHPSGNEK*PTTPEA
Trigger: TGCTTCTGGTGTTGTGGGCCACTTTTCATTGCCACT...GGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACTGTTCTTAGTAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAAGTCTCCCTTGCTCCTaGCTGGGTCCTTGGTTGGCA +
Preference number: 2 (lower is better)
Translates to: GEKEYVSKQSCWALTTSISLPCS*LGPWLA
Trigger: TGCCAACCAAGGACCCAGCCAGGAGCAAGGGAGACT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp ATAAGCAACAGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTaGCCCTGCCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCA +
Preference number: 2 (lower is better)
Translates to: ISNSSRGSLHLVPVS*PCLFQLSSDALSLA
Trigger: TGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCTGTTGCTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 90 bp CCAGCTTGTGTGTGTGTGTCTACACCCGAGGCGGCACCTTTATGCTaGTATGTGCTATGTACGAACACATACACACCAACACACGCACAC +
Preference number: 2 (lower is better)
Translates to: PACVCVSTPEAAPLC*YVLCTNTYTPTHAH
Trigger: GTGTGCGTGTGTTGGTGTGTATGTGTTCGTACATAGCACATACAAGCATAAAGGTGCCGCCTCGGGTGTAGACACACACACACAAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR TCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCAGTCATGGAGACCACGTaGAGCTCAGCAGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: ACVSLHERTGLKSADYRPVMETT*SSAAPL
Trigger: CAGTGGAGCTGCTGAGCTTCACGTGGTCTCCATGAC...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp TCTCCCTTGCTCCTGGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGACCAACAGGAACCATTaGGGACACATTCTTTCACTG +
Preference number: 2 (lower is better)
Translates to: SPLLLAGSLVGNSIILSWTNRNH*GHILSL
Trigger: CAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGT...CCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCCAGGAGCAAGGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACCAGTTTCTTTGCCCTaGCTCTTCCAACTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: PSERLLESVTVCPESLYQPVSLP*LFQLSS
Trigger: GCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACTGG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGCAGTAGAGGCAGCCTaGACCTTGTGCCAGTTTCTT +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLAVEAA*TLCQFL
Trigger: AAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGC...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTATTTGGAAGGAGCAATaGTACTTGAGTGTGCATGCC +
Preference number: 2 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCIWKEQ*YLSVHA
Trigger: GGCATGCACACTCAAGTAGCATTGCTCCTTCCAAAT...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATGTAGCACTGTGTCTCTaGGAGAAGGAAGGAGAGAGA +
Preference number: 2 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHVALCL*EKEGER
Trigger: TCTCTCTCCTTCCTTCTCCCAGAGACACAGTGCTAC...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp TGTCTACTAAGAACAGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCGGGAAAAAGGAGTGTTaGCTCATCTCCTTTTGTCTG +
Preference number: 2 (lower is better)
Translates to: CLLRTVGARANVWSLVHPGKKEC*LISFCL
Trigger: CAGACAAAAGGAGATGAGCCAACACTCCTTTTTCCC...GGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACTGTTCTTAGTAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp TTGAGGTCATGTGATGCTTGTCCTTGTAATGAGAATTCCCTCTCTTaGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCC +
Preference number: 2 (lower is better)
Translates to: LRSCDACPCNENSLS*KVPSLASRPQHLAS
Trigger: GGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGGGAATTCTCATTACAAGGACAAGCATCACATGACCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACTTTCTCAGTGGCAATaGAAAGTGGCCCACAACACC +
Preference number: 2 (lower is better)
Translates to: PSERLLESVTVCPESLYQLSQWQ*KVAHNT
Trigger: GGTGTTGTGGGCCACTTTTCATTGCCACTGAGAAAG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATGGTTTGGATGACTGCTaGAATGAAATCAGGGCTCTC +
Preference number: 2 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHGLDDC*NEIRAL
Trigger: GAGAGCCCTGATTTCATTTCAGCAGTCATCCAAACC...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGAGTGCGAAGATACCATaGTTGTGTTCTTTTGAGGTC +
Preference number: 2 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGSAKIP*LCSFEV
Trigger: GACCTCAAAAGAACACAATCATGGTATCTTCGCACT...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTGGAATTCCAGGAGCCTaGGACACTCTCTGGTGCAAC +
Preference number: 2 (lower is better)
Translates to: RERICIQAVVLGPDYKHSGIPGA*DTLWCN
Trigger: GTTGCACCAGAGAGTGTCTCAGGCTCCTGGAATTCC...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp TGTCTACTAAGAACAGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCCAACTCAGCAGCGATaGACTTTCTTTAGCACTATT +
Preference number: 2 (lower is better)
Translates to: CLLRTVGARANVWSLVHPPTQQR*TFFSTI
Trigger: AATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG...GGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACTGTTCTTAGTAGACA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGGCAGTAGAGGCAGCCTaGACCTTGTGCCAGTTTCTT +
Preference number: 2 (lower is better)
Translates to: GWVLGWQQYNPELVNSILAVEAA*TLCQFL
Trigger: AAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGC...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTTCTCTGGTGCAACGTTaGCATCAGAGAGGCTCCTGG +
Preference number: 2 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLSLVQR*HQRGSW
Trigger: CCAGGAGCCTCTCTGATGGCAACGTTGCACCAGAGA...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGTTTGGATGACTGCTaGAATGAAATCAGGGCTCTC +
Preference number: 2 (lower is better)
Translates to: PSERLLESVTVCPESLYQGLDDC*NEIRAL
Trigger: GAGAGCCCTGATTTCATTTCAGCAGTCATCCAAACC...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGTGTTCTGGGTGGCAGTaGTATAGATGTCCTTTTAAA +
Preference number: 2 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGCSGWQ*YRCPFK
Trigger: TTTAAAAGGACATCTATATCACTGCCACCCAGAACA...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTGGCTCCTGGAAAGTGTaGCAGTTTGTCCAGAGTCCC +
Preference number: 2 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFGSWKV*QFVQSP
Trigger: GGGACTCTGGACAAACTGTCACACTTTCCAGGAGCC...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAGTGAGAAGACAGCTTTaGAAGCCTTCCTCTGGGTTA +
Preference number: 2 (lower is better)
Translates to: GPYINSAATPSSCVLADRVRRQL*KPSSGL
Trigger: TAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCTCAC...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGTTTTTACTTTGGGGCTaGCGGGACTTTGGAGGTGAA +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLFLLWG*RDFGGE
Trigger: TTCACCTCCAAAGTCCCGGCAGCCCCAAAGTAAAAA...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAAATGGCCTCCTCTGCTaGTTGCTGTGCAGTTCTTGC +
Preference number: 2 (lower is better)
Translates to: SSDALSLALFSSCFFFPENGLLC*LLCSSC
Trigger: GCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATT...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCCCAACTCAGCAGCGATaGACTTTCTTTAGCACTATT +
Preference number: 2 (lower is better)
Translates to: TALSQEADIAGQEQMISPPTQQR*TFFSTI
Trigger: AATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAAGTGGCAATGAAAAGTaGCCCACAACACCAGAAGCA +
Preference number: 2 (lower is better)
Translates to: GEKEYVSKQSCWALTTSISGNEK*PTTPEA
Trigger: TGCTTCTGGTGTTGTGGGCCACTTTTCATTGCCACT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCAGTAGCACTGTGTCTCTaGGAGAAGGAAGGAGAGAGA +
Preference number: 2 (lower is better)
Translates to: ACVSLHERTGLKSADYRPVALCL*EKEGER
Trigger: TCTCTCTCCTTCCTTCTCCCAGAGACACAGTGCTAC...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGTTTGTCTGGACATCCTaGGGTACCAAGAAATACACC +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLFVWTS*GTKKYT
Trigger: GGTGTATTTCTTGGTACCCCAGGATGTCCAGACAAA...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGTCATCTCCTTTTGTCTaGACATCCTGGGGTACCAAG +
Preference number: 2 (lower is better)
Translates to: GWVLGWQQYNPELVNSILSSPFV*TSWGTK
Trigger: CTTGGTACCCCAGGATGTCCAGACAAAAGGAGATGA...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGTACTGTGCTGTAAGCTaGGATGATCATGGAGAATGG +
Preference number: 2 (lower is better)
Translates to: GWVLGWQQYNPELVNSILYCAVS*DDHGEW
Trigger: CCATTCTCCATGATCATCTCAGCTTACAGCACAGTA...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATAATGGTCTAATCCTCTaGTTCAGATTGTTGGAAGAC +
Preference number: 2 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHNGLIL*FRLLED
Trigger: GTCTTCCAACAATCTGAAGCAGAGGATTAGACCATT...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGTTATCAAAATCCAATaGCCTCCTCTGCTGATTGCT +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLVIKIQ*PPLLIA
Trigger: AGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAGTTATCAAAATCCAATaGCCTCCTCTGCTGATTGCT +
Preference number: 2 (lower is better)
Translates to: GPYINSAATPSSCVLADRVIKIQ*PPLLIA
Trigger: AGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGAGAAGGCTGGGGGTTTaGATGACTGCTGAAATGAAA +
Preference number: 2 (lower is better)
Translates to: GWVLGWQQYNPELVNSILRRLGV*MTAEMK
Trigger: TTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCT...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp CCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTTGCTGTAAGCTGAGATaGTCATGGAGAATGGTGGCA +
Preference number: 2 (lower is better)
Translates to: PTQQRCTFFSTILILLLLCCKLR*SWRMVA
Trigger: TGCCACCATTCTCCATGATCATCTCAGCTTACAGCA...AAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGTGTTCTGGGTGGCAGTaGTATAGATGTCCTTTTAAA +
Preference number: 2 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRCSGWQ*YRCPFK
Trigger: TTTAAAAGGACATCTATATCACTGCCACCCAGAACA...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGTAGATAAAGACAACTaGATGCAACCAACTTTCCAG +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLVDKDN*MQPTFQ
Trigger: CTGGAAAGTTGGTTGCATTCAGTTGTCTTTATCTAC...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCGAATTTCATCAGTGTTaGACAAGCTCATTTTCCTTG +
Preference number: 2 (lower is better)
Translates to: TALSQEADIAGQEQMISPEFHQC*TSSFSL
Trigger: CAAGGAAAATGAGCTTGTTCAACACTGATGAAATTC...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTGTGAGAAGACAGCTTTaGAAGCCTTCCTCTGGGTTA +
Preference number: 2 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFVRRQL*KPSSGL
Trigger: TAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCTCAC...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGATAAAGACAACTGAATaGAACCAACTTTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLIKTTE*NQLSRL
Trigger: GAGCCTGGAAAGTTGGTTGCATTCAGTTGTCTTTAT...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGGAGATGGTGAGAGATTaGACCATATATAAACAGTGC +
Preference number: 2 (lower is better)
Translates to: IREAPGKCDSLSRVPLSREMVRD*TIYKQC
Trigger: GCACTGTTTATATATGGTCCAATCTCTCACCATCTC...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGAGTTTTAGAGTAGGTTaGGTTGCTATGGTTACTAGG +
Preference number: 2 (lower is better)
Translates to: SNQGQLRRERICIQAVVLSFRVG*VAMVTR
Trigger: CCTAGTAACCATAGCAACCCAACCTACTCTAAAACT...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCCACTTTACTGTTGGGTaGGAGTTCTTTGAAAATTCA +
Preference number: 2 (lower is better)
Translates to: TALSQEADIAGQEQMISPHFTVG*EFFENS
Trigger: TGAATTTTCAAAGAACTCCCACCCAACAGTAAAGTG...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCATTTATAAACTAGCTTaGAGATGTGGGGGAAAAAGG +
Preference number: 2 (lower is better)
Translates to: TALSQEADIAGQEQMISPIYKLA*RCGGKR
Trigger: CCTTTTTCCCCCACATCTCCAAGCTAGTTTATAAAT...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAACTTTCTCAGTGGCAATaGAAAGTGGCCCACAACACC +
Preference number: 2 (lower is better)
Translates to: GWEFFENSLLEDALLNSKLSQWQ*KVAHNT
Trigger: GGTGTTGTGGGCCACTTTTCATTGCCACTGAGAAAG...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGTGTTCTGGGTGGCAGTaGTATAGATGTCCTTTTAAA +
Preference number: 2 (lower is better)
Translates to: GWVLGWQQYNPELVNSILCSGWQ*YRCPFK
Trigger: TTTAAAAGGACATCTATATCACTGCCACCCAGAACA...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAATGATTGTGTTCTTTTaGGGTCATGTGATGCTTGTC +
Preference number: 2 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIMIVFF*GHVMLV
Trigger: GACAAGCATCACATGACCTCAAAAGAACACAATCAT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTTGGGACTCTGGTCAATaGACTTCCATTCTGATATCA +
Preference number: 2 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLWDSGQ*TSILIS
Trigger: TGATATCAGAATGGAAGTTCATTGACCAGAGTCCCA...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR TCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATGGAGTGAGGGGCACCTaGCTGATTAAAGGGCTGTTG +
Preference number: 2 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYGVRGT*LIKGLL
Trigger: CAACAGCCCTTTAATCAGTCAGGTGCCCCTCACTCC...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR GCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCACCAACTCAGCAGCGATaGACTTTCTTTAGCACTATT +
Preference number: 2 (lower is better)
Translates to: ACVSLHERTGLKSADYRPPTQQR*TFFSTI
Trigger: AATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR GCA 90 bp CGCCCTCACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTTGAATGGTCTAATCCTCTaGTTCAGATTGTTGGAAGAC +
Preference number: 2 (lower is better)
Translates to: RPHPTYLNPEILSVTLLLNGLIL*FRLLED
Trigger: GTCTTCCAACAATCTGAAGCAGAGGATTAGACCATT...CAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTGAGGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAATAAAGACAACTGAATaGAACCAACTTTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIIKTTE*NQLSRL
Trigger: GAGCCTGGAAAGTTGGTTGCATTCAGTTGTCTTTAT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp CGCCCTCACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTTGAGTTTTAGAGTAGGTTaGGTTGCTATGGTTACTAGG +
Preference number: 2 (lower is better)
Translates to: RPHPTYLNPEILSVTLLLSFRVG*VAMVTR
Trigger: CCTAGTAACCATAGCAACCCAACCTACTCTAAAACT...CAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTGAGGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATTTCATCCTGTGTGCTTaGAGACAGACCCAGCTGCCT +
Preference number: 2 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYFILCA*RQTQLP
Trigger: AGGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAA...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR CCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGCAGATGCATTTGTGTTaGCAGGAAGCAACAGTCGGG +
Preference number: 2 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWQMHLC*QEATVG
Trigger: CCCGACTGTTGCTTCCTGCCAACACAAATGCATCTG...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp CCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTTTGCAAGCCTTCCTCTaGGTTATCAAAATCCAATGG +
Preference number: 2 (lower is better)
Translates to: PTQQRCTFFSTILILLLLLQAFL*VIKIQW
Trigger: CCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAA...AAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGAGAAGGCTGGGGGTTTaGATGACTGCTGAAATGAAA +
Preference number: 2 (lower is better)
Translates to: QASTFGVLQILNGLSYLMRRLGV*MTAEMK
Trigger: TTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCT...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CCA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTGAGATGGTGAGAGATTaGACCATATATAAACAGTGC +
Preference number: 2 (lower is better)
Translates to: RERICIQAVVLGPDYKHSEMVRD*TIYKQC
Trigger: GCACTGTTTATATATGGTCCAATCTCTCACCATCTC...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATGTCATAGGCCACACATaGCCTCAGGGAAACTGGAAG +
Preference number: 2 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYVIGHT*PQGNWK
Trigger: CTTCCAGTTTCCCTGAGGCCATGTGTGGCCTATGAC...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR CAA 90 bp CACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTaGGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTT +
Preference number: 2 (lower is better)
Translates to: HPTYLNPEILSVTLL*GGSSLKIHCLKMLF
Trigger: AAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCCAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 90 bp GTTCAATTATGGAACTCTCTATCTCAGAGAGTAAGACCAACCATCTaGATGCTCCAAAATTCAAACCATAACCAACCCATCCCAGGGTCT +
Preference number: 2 (lower is better)
Translates to: VQLWNSLSQRVRPTI*MLQNSNHNQPIPGS
Trigger: AGACCCTGGGATGGGTTGGTTATGGTTTGAATTTTGGAGCATCAAGATGGTTGGTCTTACTCTCTGAGATAGAGAGTTCCATAATTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp AAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAGTAAGATGTGTGTaGACACGTGTTCATGTGTAC +
Preference number: 2 (lower is better)
Translates to: KEAVDHQFVEMCSEASMCKVRCV*TRVHVY
Trigger: GTACACATGAACACGTGTGCACACACATCTTACTTT...ACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
3UTR-3UTR CCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGGTTATCAAAATCCAATaGCCTCCTCTGCTGATTGCT +
Preference number: 2 (lower is better)
Translates to: QASTFGVLQILNGLSYLMVIKIQ*PPLLIA
Trigger: AGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 90 bp TCTATCAAGGACATTCGAGTGCGAAGATACCATGATTGTGTTCTTTaGAGGTCATGTGATGCTTGTCCTTGTAATGAGAATTCCCTCTCT +
Preference number: 2 (lower is better)
Translates to: SIKDIRVRRYHDCVL*RSCDACPCNENSLS
Trigger: AGAGAGGGAATTCTCATTACAAGGACAAGCATCACATGACCTCAAAAGAACACAATCATGGTATCTTCGCACTCGAATGTCCTTGATAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR TCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGTACTGTGCTGTAAGCTaGGATGATCATGGAGAATGG +
Preference number: 2 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWYCAVS*DDHGEW
Trigger: CCATTCTCCATGATCATCTCAGCTTACAGCACAGTA...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR GCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGACCATATATAAACAGTaGGGCAACCCCTTCATCCTG +
Preference number: 2 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWTIYKQ*GNPFIL
Trigger: CAGGATGAAGGGGTTGCCGCACTGTTTATATATGGT...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAGGGGCTGCCGGGACTTaGGAGGTGAAGGGGAAGTGC +
Preference number: 3 (lower is better)
Translates to: GGRPSWTKGNRATICHRPGAAGT*EVKGKC
Trigger: GCACTTCCCCTTCACCTCCAAAGTCCCGGCAGCCCC...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 72 bp CCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTaGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGT +
Preference number: 3 (lower is better)
Translates to: PAVKESSESCSA*QAYKAFAFRNG
Trigger: ACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR-3UTR CAA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTTTAGCCCGGCCTCTCTaGCAACCTTTTAAACACATC +
Preference number: 3 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLALARPL*QPFKHI
Trigger: GATGTGTTTAAAAGGTTGCAAGAGAGGCCGGGCTAA...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp GAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTaGAGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGG +
Preference number: 3 (lower is better)
Translates to: EMDEHYRRRCPL*RRAPSRAQLGR
Trigger: CCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR CCA 72 bp AAAAGTGGCCCACAACACCAGAAGCAGCAGTTGTCATaGAGACCACGTGAAGCTCAGCAGCTCCACTGGGGC +
Preference number: 3 (lower is better)
Translates to: KSGPQHQKQQLS*RPREAQQLHWG
Trigger: GCCCCAGTGGAGCTGCTGAGCTTCACGTGGTCTCCATGACAACTGCTGCTTCTGGTGTTGTGGGCCACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CCA 72 bp GGAGGACGAGGAGGAGGAATAGGAGGGAGGCCTAGCTaGACAAAGGGAAACAGAGCGACCATCTGTCATAGG +
Preference number: 3 (lower is better)
Translates to: GGRGGGIGGRPS*TKGNRATICHR
Trigger: CCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCCTATTCCTCCTCCTCGTCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp GATGGCAGTGATGGAAGCCTTCAGCGGCAGAGAACGTaGGGGGCGTGTGTTTCTTTGCATGAGAGGACTGGA +
Preference number: 3 (lower is better)
Translates to: DGSDGSLQRQRT*GACVSLHERTG
Trigger: TCCAGTCCTCTCATGCAAAGAAACACACGCCCCTCACGTTCTCTGCCGCTGAAGGCTTCCATCACTGCCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp GCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTaGCCTGCCTCTTCCAACTCAGCAGCGATGCACTTT +
Preference number: 3 (lower is better)
Translates to: AVEAACTLCQFL*PASSNSAAMHF
Trigger: AAAGTGCATCGCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp CTGGAACCTGAGTGTACTGCCTTTCTTCCTTCCGTTTaGAACCCTCCTCCAGCCTCACATCTGGCTGGCGTA +
Preference number: 3 (lower is better)
Translates to: LEPECTAFLPSV*NPPPASHLAGV
Trigger: TACGCCAGCCAGATGTGAGGCTGGAGGAGGGTTGCAAACGGAAGGAAGAAAGGCAGTACACTCAGGTTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp AGACGCTTGGTTCCCTTGTCTACTAAGAACAGTGGGTaGCAGGGCAAATGTGTGGTCACTGGTGCACCCCCA +
Preference number: 3 (lower is better)
Translates to: RRLVPLSTKNSG*QGKCVVTGAPP
Trigger: TGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACTGTTCTTAGTAGACAAGGGAACCAAGCGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp GCCCTCCCTCTGTGGGTTAGGACTATGCTTAGTTCTTaGTCTCAGGGTGGCTCACCTTTCCTTCCTGATCCG +
Preference number: 3 (lower is better)
Translates to: ALPLWVRTMLSS*SQGGSPFLPDP
Trigger: CGGATCAGGAAGGAAAGGTGAGCCACCCTGAGAGCAAGAACTAAGCATAGTCCTAACCCACAGAGGGAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR CAA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTCAAGTTCCTTCCTACTaGGCTCATATTAATCTCTCC +
Preference number: 3 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLAQVPSY*AHINLS
Trigger: GGAGAGATTAATATGAGCCAAGTAGGAAGGAACTTG...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp TATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTaGAGACAGACCCAGCTGCCTGTAGCACTGTGTCTC +
Preference number: 3 (lower is better)
Translates to: YKQCGNPFILCA*RQTQLPVALCL
Trigger: GAGACACAGTGCTACAGGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CCA 72 bp GAGAATGGTGGCACACGTTCCCAGATGCATTTGTGTTaGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCA +
Preference number: 3 (lower is better)
Translates to: ENGGTRSQMHLC*QEATVGLPAFS
Trigger: TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGTGTGCCACCATTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGACCAGATGCATTTGTGTaGGCAGGAAGCAACAGTCGG +
Preference number: 3 (lower is better)
Translates to: SLKVPSLASRPQHLASYRPDAFV*AGSNSR
Trigger: CCGACTGTTGCTTCCTGCCAACACAAATGCATCTGG...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGACTTGTGCCAGTTTCTTaGCCCTGCCTCTTCCAACTC +
Preference number: 3 (lower is better)
Translates to: SLKVPSLASRPQHLASYRLVPVS*PCLFQL
Trigger: GAGTTGGAAGAGGCAGGGCAAAGAAACTGGCACAAG...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGCTTCATCCTGTGTGCTaGCAGACAGACCCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: SNQGQLRRERICIQAVVLLHPVC*QTDPAA
Trigger: GGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAAG...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACTTCATCCTGTGTGCTaGCAGACAGACCCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: PSERLLESVTVCPESLYQLHPVC*QTDPAA
Trigger: GGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAAG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTCTCACCAGTGCCCAGTaGGAAGTACTCTCTTCTCAT +
Preference number: 3 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCLTSAQ*EVLSSH
Trigger: ATGAGAAGAGAGTACTTCCAACTGGGCACTGGTGAG...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp AAGCAACAGTCGGGCTCCCTGCTTTCTCAGTGGCAATaGAAAGTGGCCCACAACACCAGAAGCAGCAGTTGT +
Preference number: 3 (lower is better)
Translates to: KQQSGSLLSQWQ*KVAHNTRSSSC
Trigger: ACAACTGCTGCTTCTGGTGTTGTGGGCCACTTTTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp GCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTaGTTTCTCAGTGGCAATGAAAAGTGGCCCACAACA +
Preference number: 3 (lower is better)
Translates to: AFVLAGSNSRAP*FLSGNEKWPTT
Trigger: TGTTGTGGGCCACTTTTCATTGCCACTGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp AACTCCCAACCAGCCAGCATGGCTCTGGCTCACCAGTaGCCAGTTGGAAGTACTCTCTTCTCATTTCTTCTC +
Preference number: 3 (lower is better)
Translates to: NSQPASMALAHQ*PVGSTLFSFLL
Trigger: GAGAAGAAATGAGAAGAGAGTACTTCCAACTGGGCACTGGTGAGCCAGAGCCATGCTGGCTGGTTGGGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp GATAGTTCTTGGCCCTCCCTCTGTGGGTTAGGACTATaGTTAGTTCTTGCTCTCAGGGTGGCTCACCTTTCC +
Preference number: 3 (lower is better)
Translates to: DSSWPSLCGLGL*LVLALRVAHLS
Trigger: GGAAAGGTGAGCCACCCTGAGAGCAAGAACTAAGCATAGTCCTAACCCACAGAGGGAGGGCCAAGAACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR GCA 72 bp ATGTGTGAGTGCATGATGGCAGAGAGTATGCCAGCCTaGCTGAAGCTACTCCAGGTCACTCAGACACTGAGT +
Preference number: 3 (lower is better)
Translates to: MCECMMAESMPA*LKLLQVTQTLS
Trigger: ACTCAGTGTCTGAGTGACCTGGAGTAGCTTCAGGCAGGCTGGCATACTCTCTGCCATCATGCACTCACACAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR CCA 72 bp CCATCTGTCATAGGCCACACATGGCCTCAGGGAAACTaGAAGGAGGTCAGCCTAAGAGAGCAGTTTCAAACC +
Preference number: 3 (lower is better)
Translates to: PSVIGHTWPQGN*KEVSLREQFQT
Trigger: GGTTTGAAACTGCTCTCTTAGGCTGACCTCCTTCCAGTTTCCCTGAGGCCATGTGTGGCCTATGACAGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATGAGAATTCCCTCTCTTaGAAGGTACCCAGCCTAGCC +
Preference number: 3 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHENSLS*KVPSLA
Trigger: GGCTAGGCTGGGTACCTTCAAAGAGAGGGAATTCTC...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGCTTGTGCCAGTTTCTTaGCCCTGCCTCTTCCAACTC +
Preference number: 3 (lower is better)
Translates to: SNQGQLRRERICIQAVVLLVPVS*PCLFQL
Trigger: GAGTTGGAAGAGGCAGGGCAAAGAAACTGGCACAAG...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCACTGGGCTCTTTTAATTaGGAAGGAGCAATGCTACTT +
Preference number: 3 (lower is better)
Translates to: GGRPSWTKGNRATICHRPLGSFN*EGAMLL
Trigger: AAGTAGCATTGCTCCTTCCAAATTAAAAGAGCCCAG...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp CACCCAGCATTGTCAGTTTGGAATCCTGTGTTTGCCTaGCTGAAAGTTCAAGTCTCCCTTGCTCCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: HPALSVWNPVFA*LKVQVSLAPGW
Trigger: CCAGCCAGGAGCAAGGGAGACTTGAACTTTCAGTCAGGCAAACACAGGATTCCAAACTGACAATGCTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 72 bp GACTCGGGCATCTTGAACCCCGGGGATGCTGTTTGTTaGTGTTTACTCAGAAGCCGCAAGAATGGTAGGTAT +
Preference number: 3 (lower is better)
Translates to: DSGILNPGDAVC*CLLRSRKNGRY
Trigger: ATACCTACCATTCTTGCGGCTTCTGAGTAAACACCAACAAACAGCATCCCCGGGGTTCAAGATGCCCGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR CAA 90 bp AGAAGACAGCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATGGCCTCCTCCACCAGAAGCAGCAGTaGTCATGGAGACCACGTGAA +
Preference number: 3 (lower is better)
Translates to: RRQLCKPSSGLSKSNGLLHQKQQ*SWRPRE
Trigger: TTCACGTGGTCTCCATGACAACTGCTGCTTCTGGTG...GAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTCTTCATCCTGTGTGCTaGCAGACAGACCCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFLHPVC*QTDPAA
Trigger: GGCAGCTGGGTCTGTCTGCAAGCACACAGGATGAAG...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGAATGATTCCCTCTTTTaGTTCTGGGTGGCAGTGATA +
Preference number: 3 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGNDSLF*FWVAVI
Trigger: TATCACTGCCACCCAGAACAAAAAGAGGGAATCATT...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp GCAGTTCTTGCAGCATTACTGTGCTGTAAGCTGAGATaGTCATGGAGAATGGTGGCACACGTTCCCAGATGC +
Preference number: 3 (lower is better)
Translates to: AVLAALLCCKLR*SWRMVAHVPRC
Trigger: GCATCTGGGAACGTGTGCCACCATTCTCCATGATCATCTCAGCTTACAGCACAGTAATGCTGCAAGAACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp TCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTaGAATGAAATCAGGGCTCTCTATTTAGGGCACTCG +
Preference number: 3 (lower is better)
Translates to: SSSQKAGGLDDC*NEIRALYLGHS
Trigger: CGAGTGCCCTAAATAGAGAGCCCTGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp CCTTTTCTCAAGCTCACAGGGAATAGGTCTGGAACCTaGGTGTACTGCCTTTCTTCCTTCCGTTTGCAACCC +
Preference number: 3 (lower is better)
Translates to: PFLKLTGNRSGT*VYCLSSFRLQP
Trigger: GGGTTGCAAACGGAAGGAAGAAAGGCAGTACACTCAGGTTCCAGACCTATTCCCTGTGAGCTTGAGAAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp GTATCATGCTGGGCTCTTTTAATTTGGAAGGAGCAATaGTACTTGAGTGTGCATGCCCTTCGGGCCCCATTG +
Preference number: 3 (lower is better)
Translates to: VSCWALLIWKEQ*YLSVHALRAPL
Trigger: CAATGGGGCCCGAAGGGCATGCACACTCAAGTAGCATTGCTCCTTCCAAATTAAAAGAGCCCAGCATGATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 72 bp GCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATaGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAG +
Preference number: 3 (lower is better)
Translates to: ALQAFLWVIKIQ*PPLLIAVQFLQ
Trigger: CTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCACCAGAAGCAGCAGTaGTCATGGAGACCACGTGAA +
Preference number: 3 (lower is better)
Translates to: PLPTQQRCTFFSTILILLHQKQQ*SWRPRE
Trigger: TTCACGTGGTCTCCATGACAACTGCTGCTTCTGGTG...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTCCAGATGCATTTGTGTaGGCAGGAAGCAACAGTCGG +
Preference number: 3 (lower is better)
Translates to: RERICIQAVVLGPDYKHSPDAFV*AGSNSR
Trigger: CCGACTGTTGCTTCCTGCCAACACAAATGCATCTGG...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCACTTGTGCCAGTTTCTTaGCCCTGCCTCTTCCAACTC +
Preference number: 3 (lower is better)
Translates to: ACVSLHERTGLKSADYRPLVPVS*PCLFQL
Trigger: GAGTTGGAAGAGGCAGGGCAAAGAAACTGGCACAAG...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTATCAGGCTACAAAGTTaGGCCCAAGAATCATCTCTA +
Preference number: 3 (lower is better)
Translates to: EGTQPSLQASTFGVLQILIRLQS*AQESSL
Trigger: TAGAGATGATTCTTGGGCCAAACTTTGTAGCCTGAT...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp TCTTGCTCTCAGGGTGGCTCACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTCCATCACACCCAGCATaGTCAGTTTGGAATCCTGTG +
Preference number: 3 (lower is better)
Translates to: SCSQGGSPFLPDPGVFISPSHPA*SVWNPV
Trigger: CACAGGATTCCAAACTGACAATGCTGGGTGTGATGG...AGATATAAAAACACCCGGATCAGGAAGGAAAGGTGAGCCACCCTGAGAGCAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR TCA 72 bp TCCTCTGGGTTATCAAAATCCAATGGCCTCCTCTGCTaGTTGCTGTGCAGTTCTTGCAGCATTACTGTGCTG +
Preference number: 3 (lower is better)
Translates to: SSGLSKSNGLLC*LLCSSCSITVL
Trigger: CAGCACAGTAATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAACCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp TCTTCATTAAAGAACCCTAAGGGAATTCCAGGAGCCTaGGACACTCTCTGGTGCAACGTTGCCATCAGAGAG +
Preference number: 3 (lower is better)
Translates to: SSLKNPKGIPGA*DTLWCNVAIRE
Trigger: CTCTCTGATGGCAACGTTGCACCAGAGAGTGTCTCAGGCTCCTGGAATTCCCTTAGGGTTCTTTAATGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp TACTTGGCTCATATTAATCTCTCCAGTTCTTTTTCCTaGGGAGGACGAGGAGGAGGAATAGGAGGGAGGCCT +
Preference number: 3 (lower is better)
Translates to: YLAHINLSSSFS*GGRGGGIGGRP
Trigger: AGGCCTCCCTCCTATTCCTCCTCCTCGTCCTCCTCAGGAAAAAGAACTGGAGAGATTAATATGAGCCAAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp GGCTCTCTATTTAGGGCACTCGTGAGAAGACAGCTTTaGAAGCCTTCCTCTGGGTTATCAAAATCCAATGGC +
Preference number: 3 (lower is better)
Translates to: GSLFRALVRRQL*KPSSGLSKSNG
Trigger: GCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCTCACGAGTGCCCTAAATAGAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp CAAGAGATGGTGAGAGATTGGACCATATATAAACAGTaGGGCAACCCCTTCATCCTGTGTGCTTGCAGACAG +
Preference number: 3 (lower is better)
Translates to: QEMVRDWTIYKQ*GNPFILCACRQ
Trigger: CTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCACCATCTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp ATCACACCCAGCATTGTCAGTTTGGAATCCTGTGTTTaGCTGACTGAAAGTTCAAGTCTCCCTTGCTCCTGG +
Preference number: 3 (lower is better)
Translates to: ITPSIVSLESCV*LTESSSLPCSW
Trigger: CCAGGAGCAAGGGAGACTTGAACTTTCAGTCAGGCAAACACAGGATTCCAAACTGACAATGCTGGGTGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp CACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTATaGTTTCCTTCCATGAGTACAGGGCTGCCTCCGAGT +
Preference number: 3 (lower is better)
Translates to: HLSFLIRVFLYL*FPSMSTGLPPS
Trigger: ACTCGGAGGCAGCCCTGTACTCATGGAAGGAAAGCATAGATATAAAAACACCCGGATCAGGAAGGAAAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp TGTGTGTGTGTGTCTACACCCGAGGCGGCACCTTTATaGTTGTATGTGCTATGTACGAACACATACACACCA +
Preference number: 3 (lower is better)
Translates to: CVCVSTPEAAPL*LYVLCTNTYTP
Trigger: TGGTGTGTATGTGTTCGTACATAGCACATACAAGCATAAAGGTGCCGCCTCGGGTGTAGACACACACACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR CCA 72 bp CTCATCCTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTaGATGACTGCTGAAATGAAATCAGGGCTCTCTATT +
Preference number: 3 (lower is better)
Translates to: LILLLLPRRLGV*MTAEMKSGLSI
Trigger: AATAGAGAGCCCTGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAGGATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCCATGATTGTGTTCTTTaGAGGTCATGTGATGCTTGT +
Preference number: 3 (lower is better)
Translates to: TALSQEADIAGQEQMISPHDCVL*RSCDAC
Trigger: ACAAGCATCACATGACCTCAAAAGAACACAATCATG...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCGTAAGACCAACCATCTaGATGCTCCAAAATTCAAAC +
Preference number: 3 (lower is better)
Translates to: TALSQEADIAGQEQMISPVRPTI*MLQNSN
Trigger: GTTTGAATTTTGGAGCATCAAGATGGTTGGTCTTAC...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp CTGCTGATTATAGGCCAACAGCTGCTCAAGAGATGGTaGGAGATTGGACCATATATAAACAGTGCGGCAACC +
Preference number: 3 (lower is better)
Translates to: LLIIGQQLLKRW*EIGPYINSAAT
Trigger: GGTTGCCGCACTGTTTATATATGGTCCAATCTCTCACCATCTCTTGAGCAGCTGTTGGCCTATAATCAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp GACAGGGCTATCAACGTAAGTGATCACTGTCAAGTTTaGCAGAATTGGCAGACAACTCCCTTCCTAGACAGC +
Preference number: 3 (lower is better)
Translates to: DRAINVSDHCQV*QNWQTTPFLDS
Trigger: GCTGTCTAGGAAGGGAGTTGTCTGCCAATTCTGTCAAACTTGACAGTGATCACTTACGTTGATAGCCCTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp CTGGGTTATCAAAATCCAATGGCCTCCTCTGCTGATTaGTGTGCAGTTCTTGCAGCATTACTGTGCTGTAAG +
Preference number: 3 (lower is better)
Translates to: LGYQNPMASSAD*CAVLAALLCCK
Trigger: CTTACAGCACAGTAATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAACCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR GCA 72 bp CACACGCACACACAAATTTTAGAATCCCCACATGTATaGTTTCACAGACACCAAGCTGACTCGGGCATCTTG +
Preference number: 3 (lower is better)
Translates to: HTHTQILESPHV*FHRHQADSGIL
Trigger: CAAGATGCCCGAGTCAGCTTGGTGTCTGTGAAAGCATACATGTGGGGATTCTAAAATTTGTGTGTGCGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR-3UTR CAA 90 bp CGCCCTCACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTTGCTTGAAGATGCTCTTTaGAACTCCAAAGCCCCAAAT +
Preference number: 3 (lower is better)
Translates to: RPHPTYLNPEILSVTLLLLEDAL*NSKAPN
Trigger: ATTTGGGGCTTTGGAGTTCAAAAGAGCATCTTCAAG...CAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTGAGGGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGAAGTTCAAGTCTCCCTaGCTCCTGGCTGGGTCCTTG +
Preference number: 3 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWKFKSP*LLAGSL
Trigger: CAAGGACCCAGCCAGGAGCAAGGGAGACTTGAACTT...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp TCTTGCTCTCAGGGTGGCTCACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTCAAGTTCCTTCCTACTaGGCTCATATTAATCTCTCC +
Preference number: 3 (lower is better)
Translates to: SCSQGGSPFLPDPGVFISQVPSY*AHINLS
Trigger: GGAGAGATTAATATGAGCCAAGTAGGAAGGAACTTG...AGATATAAAAACACCCGGATCAGGAAGGAAAGGTGAGCCACCCTGAGAGCAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR TCA 72 bp TGCCTCAATAATGGATGCTTCTGGAAGTTCTATGACTaGAGCAGCTTTTGGTGTGATTGCTACTGTCCTGGG +
Preference number: 3 (lower is better)
Translates to: CLNNGCFWKFYD*SSFWCDCYCPG
Trigger: CCCAGGACAGTAGCAATCACACCAAAAGCTGCTTCAGTCATAGAACTTCCAGAAGCATCCATTATTGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp AGTTTCTTTGCCCTGCCTCTTCCAACTCAGCAGCGATaGACTTTCTTTAGCACTATTCTCATCCTGCTTCTT +
Preference number: 3 (lower is better)
Translates to: SFFALPLPTQQR*TFFSTILILLL
Trigger: AAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGGCAGGGCAAAGAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR-3UTR CAA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAATTGCTGTGCAGTTCTaGCAGCATTACTGTGCTGTA +
Preference number: 3 (lower is better)
Translates to: SSDALSLALFSSCFFFPEIAVQF*QHYCAV
Trigger: TACAGCACAGTAATGCTGCAAGAACTGCACAGCAAT...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR TCA 72 bp ATTAAAGGGCTGTTGGGACAGGGCTATCAACGTAAGTaGTCACTGTCAAGTTTGACAGAATTGGCAGACAAC +
Preference number: 3 (lower is better)
Translates to: IKGLLGQGYQRK*SLSSLTELADN
Trigger: GTTGTCTGCCAATTCTGTCAAACTTGACAGTGATCACTTACGTTGATAGCCCTGTCCCAACAGCCCTTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR-3UTR CAA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATCGGGGATGCTGTTTGTaGGTGTTTACTCAGAAGCCG +
Preference number: 3 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYRGCCL*VFTQKP
Trigger: CGGCTTCTGAGTAAACACCAACAAACAGCATCCCCG...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR GCA 72 bp AGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTaGTGGGCCCTGACTACAAGCATAGTTCATTTATTA +
Preference number: 3 (lower is better)
Translates to: SSGEKEYVSKQS*WALTTSIVHLL
Trigger: TAATAAATGAACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 72 bp TCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTaGGCCCTGACTACAAGCATAGTTCATTTATTATGG +
Preference number: 3 (lower is better)
Translates to: SGEKEYVSKQSC*ALTTSIVHLLW
Trigger: CCATAATAAATGAACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR GCA 72 bp CAAAAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTaGTCTGAAGCTTCGATGTGTAAAGTAAGATGTGTG +
Preference number: 3 (lower is better)
Translates to: QKEAVDHQFVEM*SEASMCKVRCV
Trigger: CACACATCTTACTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
3UTR-3UTR CAA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAACATGATTGTGTTCTTTaGAGGTCATGTGATGCTTGT +
Preference number: 3 (lower is better)
Translates to: GWEFFENSLLEDALLNSKHDCVL*RSCDAC
Trigger: ACAAGCATCACATGACCTCAAAAGAACACAATCATG...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp GATAACTATGTGATAAACACGAACAGAGGCTTCAGATaGCAGCTCGTTTGTAGCTTTGATCTTTTGCTAGGA +
Preference number: 3 (lower is better)
Translates to: DNYVINTNRGFR*QLVCSFDLLLG
Trigger: TCCTAGCAAAAGATCAAAGCTACAAACGAGCTGTCATCTGAAGCCTCTGTTCGTGTTTATCACATAGTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR CCA 72 bp GTTCTTAGAGTTGATAGACACATTTATAAACTAGCTTaGAGATGTGGGGGAAAAAGGAGTGTTGGCTCATCT +
Preference number: 3 (lower is better)
Translates to: VLRVDRHIYKLA*RCGGKRSVGSS
Trigger: AGATGAGCCAACACTCCTTTTTCCCCCACATCTCCAAGCTAGTTTATAAATGTGTCTATCAACTCTAAGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CCA 72 bp TCTCATTTCATAGCACAGAATGGCACTGTTCAATTATaGAACTCTCTATCTCAGAGAGTAAGACCAACCATC +
Preference number: 3 (lower is better)
Translates to: SHFIAQNGTVQL*NSLSQRVRPTI
Trigger: GATGGTTGGTCTTACTCTCTGAGATAGAGAGTTCCATAATTGAACAGTGCCATTCTGTGCTATGAAATGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR TCA 72 bp ACATTCGAGTGCGAAGATACCATGATTGTGTTCTTTTaGGGTCATGTGATGCTTGTCCTTGTAATGAGAATT +
Preference number: 3 (lower is better)
Translates to: TFECEDTMIVFF*GHVMLVLVMRI
Trigger: AATTCTCATTACAAGGACAAGCATCACATGACCTCAAAAGAACACAATCATGGTATCTTCGCACTCGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCACGAGGCAGCAGTCGCTaGACTCGAGCGCCGGGAGCC +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSRGSSR*TRAPGA
Trigger: GGCTCCCGGCGCTCGAGTTCAGCGACTGCTGCCTCG...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp CTCCAACCAGCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCGTAGCTGGGCGTTGGTaGGGGGCACATCAGGCACCG +
Preference number: 4 (lower is better)
Translates to: LQPARLLRWMNIIEDGARVAGRW*GAHQAP
Trigger: CGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTAC...GCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGCTGGTTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
3UTR CAA 72 bp GCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTaGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGG +
Preference number: 4 (lower is better)
Translates to: ARCEGELRVVLS*AGVQSLCLPEW
Trigger: CCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR GCA 90 bp GAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATCAGGGGCCTCTTGCTaGAGGATGGGGGCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: ELRVVLSLAGVQSLCLPESGASC*RMGAWS
Trigger: ACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGA...TTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR TCA 90 bp TCTCCCTTGCTCCTGGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGGTCGCTGGACGTGGATaGGGTGGGCATAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: SPLLLAGSLVGNSIILSWVAGRG*GGHRAG
Trigger: TCCAGCCCTATGCCCACCTCATCCACGTCCAGCGAC...CCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCCAGGAGCAAGGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR TCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAGTCGCTGGACGTGGATaGGGTGGGCATAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLVAGRG*GGHRAG
Trigger: TCCAGCCCTATGCCCACCTCATCCACGTCCAGCGAC...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp ATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTGGTGGATGGCACAGCATaGAAGAGCGTCAGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: IIEDGARCEGELRVVLSLVDGTA*KSVRGL
Trigger: GAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCAC...CAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR TCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATGTAGCTGGGCGTTGGTaGGGGGCACATCAGGCACCG +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHVAGRW*GAHQAP
Trigger: CGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTAC...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp AGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGGGCTTGGAGTCACTaGTTTTCTTCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: RRAPSRAQLGRRTKPLPSGAWSH*FSSGTG
Trigger: ACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCC...GGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR GCA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTTCAGGGGCCTCTTGCTaGAGGATGGGGGCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCSGASC*RMGAWS
Trigger: ACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGA...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTATCAGGGGCCTCTTGCTaGAGGATGGGGGCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLSGASC*RMGAWS
Trigger: ACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGA...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGTGCAGGATGGGGGCTTaGAGTCACTGCTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GELRVVLSLAGVQSLCLPCRMGA*SHCFSS
Trigger: GGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCA...CGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CCA 90 bp CTCCAACCAGCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCCCTCTTGCTGCAGGATaGGGGCTTGGAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: LQPARLLRWMNIIEDGARPLAAG*GLGVTA
Trigger: AGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGG...GCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGCTGGTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAATGGGGGATGAGTCGCTaGACGTGGATGAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQWGMSR*TWMRWA
Trigger: TGCCCACCTCATCCACGTCCAGCGACTCATCCCCCA...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
3UTR CAA 72 bp GCCCGTCATCGCCTGGTGGAGTCTTGTCTCAGCATGTaGGAGGCATGTCCAAGGTTCAGTCCCAGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: ARHRLVESCLSM*EACPRFSPSSL
Trigger: CAGAGAGCTGGGACTGAACCTTGGACATGCCTCCAACATGCTGAGACAAGACTCCACCAGGCGATGACGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 72 bp CCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTaGCCTTCCGGAATGGTGTGCTGGAGTCTTCACGGA +
Preference number: 4 (lower is better)
Translates to: PSRAQLGRRTKP*PSGMVCWSLHG
Trigger: TCCGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR TCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTCGAGGCAGCAGTCGCTaGACTCGAGCGCCGGGAGCC +
Preference number: 4 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLRGSSR*TRAPGA
Trigger: GGCTCCCGGCGCTCGAGTTCAGCGACTGCTGCCTCG...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTAGAGCCCCTGCTCATTaGTCCCTCTGGTCTCCACCG +
Preference number: 4 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFRAPAH*SLWSPP
Trigger: CGGTGGAGACCAGAGGGATCAATGAGCAGGGGCTCT...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCACTGGCGGCCCCAATCTaGTCCTTTCGAAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: GGRPSWTKGNRATICHRPLAAPI*SFRNFS
Trigger: GGAGAAGTTTCGAAAGGAGCAGATTGGGGCCGCCAG...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAACGCTCAGCAACTTCTaGACCCTGGAGTTGACCCCC +
Preference number: 4 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLTLSNF*TLELTP
Trigger: GGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGT...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGTGGATGGCACAGCATaGAAGAGCGTCAGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSVDGTA*KSVRGL
Trigger: GAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCAC...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCACCGCTTCGTGTGACTTaGGCGTCTCTCGGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSPLRVT*ASLGSE
Trigger: CTCACTTCCGAGAGACGCTCAAGTCACACGAAGCGG...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTTGGCCAGGTGGTTCATaGGCAGCTGCAACATCTGCC +
Preference number: 4 (lower is better)
Translates to: EGTQPSLQASTFGVLQILWPGGS*AAATSA
Trigger: GGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCA...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGCCGCTTCTTCTGGCCTaGTGGGGGATGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRPLLLA*WGMSRW
Trigger: CCAGCGACTCATCCCCCATCAGGCCAGAAGAAGCGG...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCACCTTCCGGAATGGTGTaGTGGAGTCTTCACGGACCG +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSPSGMV*WSLHGP
Trigger: CGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGG...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
3UTR CAA 72 bp CAAAGGGAAGAAGGCCCGTCATCGCCTGGTGGAGTCTaGTCTCAGCATGTTGGAGGCATGTCCAAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: QREEGPSSPGGV*SQHVGGMSKVQ
Trigger: CTGAACCTTGGACATGCCTCCAACATGCTGAGACAAGACTCCACCAGGCGATGACGGGCCTTCTTCCCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp TCTCCCTTGCTCCTGGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGCAGGAAGTTCCAAAGTaGCGCTTCTCCTGCACGTAC +
Preference number: 4 (lower is better)
Translates to: SPLLLAGSLVGNSIILSWQEVPK*RFSCTY
Trigger: GTACGTGCAGGAGAAGCGTCACTTTGGAACTTCCTG...CCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCCAGGAGCAAGGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATTGGCCAGGTGGTTCATaGGCAGCTGCAACATCTGCC +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHWPGGS*AAATSA
Trigger: GGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCA...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTGGCGGCCCCAATCTaGTCCTTTCGAAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFLAAPI*SFRNFS
Trigger: GGAGAAGTTTCGAAAGGAGCAGATTGGGGCCGCCAG...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp ACAGCCTTGTCACAGGAAGCAGATATAGCCGGCCAAGAACAGATGATCTCACCCACGCTCAGCAACTTCTaGACCCTGGAGTTGACCCCC +
Preference number: 4 (lower is better)
Translates to: TALSQEADIAGQEQMISPTLSNF*TLELTP
Trigger: GGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGT...GGGTGAGATCATCTGTTCTTGGCCGGCTATATCTGCTTCCTGTGACAAGGCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTGGGGCTTGGAGTCACTaGTTTTCTTCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFGAWSH*FSSGTG
Trigger: ACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCC...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGGGGCTTGGAGTCACTaGTTTTCTTCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSGAWSH*FSSGTG
Trigger: ACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCC...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGTGGATGGCACAGCATaGAAGAGCGTCAGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: SNQGQLRRERICIQAVVLVDGTA*KSVRGL
Trigger: GAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCAC...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGGCATAGGGCTGGATaGTGCCGAGAACATGGGCCA +
Preference number: 4 (lower is better)
Translates to: PSERLLESVTVCPESLYQGHRAG*CREHGP
Trigger: TGGCCCATGTTCTCGGCACCATCCAGCCCTATGCCC...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
3UTR CAA 72 bp GCAATGAAAAGTGGCCCACAACACCAGAAGCAGCAGTaGTCATGGAGACCACGTGAAGCTCAGCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: AMKSGPQHQKQQ*SWRPREAQQLH
Trigger: GTGGAGCTGCTGAGCTTCACGTGGTCTCCATGACAACTGCTGCTTCTGGTGTTGTGGGCCACTTTTCATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCAAGAGCCCCTGCTCATTaGTCCCTCTGGTCTCCACCG +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSRAPAH*SLWSPP
Trigger: CGGTGGAGACCAGAGGGATCAATGAGCAGGGGCTCT...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTTCGATGACAATGTTCTaGAACTTGATGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLASMTMF*NLMSMM
Trigger: CATCATGGACATCAAGTTTCAGAACATTGTCATCGA...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTGTAGCTGGGCGTTGGTaGGGGGCACATCAGGCACCG +
Preference number: 4 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFVAGRW*GAHQAP
Trigger: CGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTAC...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: GGRPSWTKGNRATICHRPDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp ATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTGGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: IIEDGARCEGELRVVLSLDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...CAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR GCA 90 bp GGCTCACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGTTCTGTCTCAGAAGCTaGTTTGGGGTCCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: GSPTGTIEDTFFHWAREGFCLRS*FGVHQD
Trigger: GTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAA...CCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATATCAGGGGCCTCTTGCTaGAGGATGGGGGCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSISGASC*RMGAWS
Trigger: ACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGA...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CTCCAACCAGCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTC +
Preference number: 4 (lower is better)
Translates to: LQPARLLRWMNIIEDGARVKDAV*TRGDRF
Trigger: GAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAAC...GCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGCTGGTTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR GCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGCCTTCCGGAATGGTGTaGTGGAGTCTTCACGGACCG +
Preference number: 4 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRPSGMV*WSLHGP
Trigger: CGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGG...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAACGATGGACAAGACTGTaGATCTCAGACACTCGAGTC +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQRWTRL*ISDTRV
Trigger: GACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCG...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTCCGGGAGCCGATaGACAAGACTGTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: SLKVPSLASRPQHLASYRFSGSR*TRLWIS
Trigger: TGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAA...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATGCAGGATGGGGGCTTaGAGTCACTGCTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SLKVPSLASRPQHLASYRCRMGA*SHCFSS
Trigger: GGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCA...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCAGTGGATGGCACAGCATaGAAGAGCGTCAGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSVDGTA*KSVRGL
Trigger: GAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCAC...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp ACATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTCTGTTTTTCTGTGGATaGCACAGCATGGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: TLSKTVPAVKESSESCSALFFCG*HSMEER
Trigger: ACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAG...AGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTCTTTGCCTTCCGGAATaGTGTGCTGGAGTCTTCACG +
Preference number: 4 (lower is better)
Translates to: EGTQPSLQASTFGVLQILLCLPE*CAGVFT
Trigger: CGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAG...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
3UTR CAA 72 bp GAATTCCAGGAGCCTGAGACACTCTCTGGTGCAACGTaGCCATCAGAGAGGCTCCTGGAAAGTGTGACAGTT +
Preference number: 4 (lower is better)
Translates to: EFQEPETLSGAT*PSERLLESVTV
Trigger: AACTGTCACACTTTCCAGGAGCCTCTCTGATGGCAACGTTGCACCAGAGAGTGTCTCAGGCTCCTGGAATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGCAGCTCCGCTTCGTGTaGCTTGAGCGTCTCTCGGAA +
Preference number: 4 (lower is better)
Translates to: GWVLGWQQYNPELVNSILQLRFV*LERLSE
Trigger: TTCCGAGAGACGCTCAAGTCACACGAAGCGGAGCTG...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCAAGAGCCCCTGCTCATTaGTCCCTCTGGTCTCCACCG +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPRAPAH*SLWSPP
Trigger: CGGTGGAGACCAGAGGGATCAATGAGCAGGGGCTCT...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAATCTTCAGAGCACTGGTaGCGGTCTTTATCTCCCATT +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQSSEHW*RSLSPI
Trigger: AATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGA...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGGTAGCTGGGCGTTGGTaGGGGGCACATCAGGCACCG +
Preference number: 4 (lower is better)
Translates to: QASTFGVLQILNGLSYLMVAGRW*GAHQAP
Trigger: CGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTAC...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAAGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp AAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTGTCGCTGGACGTGGATaGGGTGGGCATAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: KEAVDHQFVEMCSEASMCVAGRG*GGHRAG
Trigger: TCCAGCCCTATGCCCACCTCATCCACGTCCAGCGAC...ACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR TCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTAGGCTGAACACTGCATaGAGAGAGGACCAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: EGTQPSLQASTFGVLQILRLNTA*REDQAN
Trigger: ATTGGCTTGGTCCTCTCTTCATGCAGTGTTCAGCCT...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR TCA 90 bp CAAAAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGCCGCTTCTTCTGGCCTaGTGGGGGATGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: QKEAVDHQFVEMCSEASMPLLLA*WGMSRW
Trigger: CCAGCGACTCATCCCCCATCAGGCCAGAAGAAGCGG...CATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR GCA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTGTTTTCCAGCTTTGCTaGTTTGATGAAACTTCTTTG +
Preference number: 4 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLAVFQLC*FDETSL
Trigger: CAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAAC...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGGGGGCTTGGAGTCACTaGTTTTCTTCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRGAWSH*FSSGTG
Trigger: ACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCC...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATGAGGAGGCTGAACACTaGATGAAGAGAGGACCAAGC +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHEEAEH*MKRGPS
Trigger: GCTTGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTC...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATCATGGTGATAACCCCTaGCCTGTCTACTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHHGDNP*PVYCFH
Trigger: GTGGAAGCAGTAGACAGGCCAGGGGTTATCACCATG...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAAGACACTCGAGTCTCTTaGTTTTCCAGCTTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQDTRVS*FSSFAA
Trigger: AGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTC...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGAAGACAGCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATGGCCTCCTCCCTCTTGCTGCAGGATaGGGGCTTGGAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: RRQLCKPSSGLSKSNGLLPLAAG*GLGVTA
Trigger: AGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGG...GAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCACCTCTTGCTGCAGGATaGGGGCTTGGAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSPLAAG*GLGVTA
Trigger: AGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGG...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTGAAGGAGCTCCTGTTTTTCTGTaGATGGCACAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: ARLLRWMNIIEDGARCEGAPVFL*MAQHGR
Trigger: TCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGC...TCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CCA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAGCTCCTGTTTTTCTGTaGATGGCACAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLAPVFL*MAQHGR
Trigger: TCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGC...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGATGGTGCCGAGAACATaGGCCATGATGGCGAGAGGG +
Preference number: 4 (lower is better)
Translates to: GWVLGWQQYNPELVNSILMVPRT*AMMARG
Trigger: CCCTCTCGCCATCATGGCCCATGTTCTCGGCACCAT...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTGGGCATAGGGCTGGATaGTGCCGAGAACATGGGCCA +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLGHRAG*CREHGP
Trigger: TGGCCCATGTTCTCGGCACCATCCAGCCCTATGCCC...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCACCGCTTCGTGTGACTTaGGCGTCTCTCGGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPPLRVT*ASLGSE
Trigger: CTCACTTCCGAGAGACGCTCAAGTCACACGAAGCGG...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATTGGCCAGGTGGTTCATaGGCAGCTGCAACATCTGCC +
Preference number: 4 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHWPGGS*AAATSA
Trigger: GGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCA...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GTCACTGGTGCACCCCCAAGCTCGCTGGCTATGAAGCTAGGTAAACAGCCTTGTCTCTCTTGCACTTCCTaGACCTTAAAGACATACTCC +
Preference number: 4 (lower is better)
Translates to: VTGAPPSSLAMKLGKQPCLSCTS*TLKTYS
Trigger: GGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAG...ACAAGGCTGTTTACCTAGCTTCATAGCCAGCGAGCTTGGGGGTGCACCAGTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp TCTTGCTCTCAGGGTGGCTCACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTTCTTCCGACAACGCCTaGATGGTGATAACCCCTGGC +
Preference number: 4 (lower is better)
Translates to: SCSQGGSPFLPDPGVFISSSDNA*MVITPG
Trigger: GCCAGGGGTTATCACCATGCAGGCGTTGTCGGAAGA...AGATATAAAAACACCCGGATCAGGAAGGAAAGGTGAGCCACCCTGAGAGCAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR GCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACACCACGCCCAGGTTTaGCACAGTCATCAGATTCTG +
Preference number: 4 (lower is better)
Translates to: PSERLLESVTVCPESLYQHHAQV*HSHQIL
Trigger: CAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCAGACACTCGAGTCTCTTaGTTTTCCAGCTTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSDTRVS*FSSFAA
Trigger: AGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTC...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATCGATGGACAAGACTGTaGATCTCAGACACTCGAGTC +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHRWTRL*ISDTRV
Trigger: GACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCG...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAGCAACATTGGCCAGGTaGTTCATGAGCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRATLAR*FMSSCN
Trigger: GTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGC...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCACCTCTTGCTGCAGGATaGGGGCTTGGAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPPLAAG*GLGVTA
Trigger: AGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGG...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTATGGTGCCGAGAACATaGGCCATGATGGCGAGAGGG +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLMVPRT*AMMARG
Trigger: CCCTCTCGCCATCATGGCCCATGTTCTCGGCACCAT...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CAAAAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGGGGCATAGGGCTGGATaGTGCCGAGAACATGGGCCA +
Preference number: 4 (lower is better)
Translates to: QKEAVDHQFVEMCSEASMGHRAG*CREHGP
Trigger: TGGCCCATGTTCTCGGCACCATCCAGCCCTATGCCC...CATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAATGGGGGATGAGTCGCTaGACGTGGATGAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPEWGMSR*TWMRWA
Trigger: TGCCCACCTCATCCACGTCCAGCGACTCATCCCCCA...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAGTGGGGGATGAGTCGCTaGACGTGGATGAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: RQLTISLWKCALKLRCVKWGMSR*TWMRWA
Trigger: TGCCCACCTCATCCACGTCCAGCGACTCATCCCCCA...CTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CCA 90 bp GCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTGAAGGAAAGCAAGTGCAGGTTTaGATGGCAGGGAACAAAGTT +
Preference number: 4 (lower is better)
Translates to: ARLLRWMNIIEDGARCEGKQVQV*MAGNKV
Trigger: AACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTT...TCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CCA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTGCCAGGCTCCTGAGATaGATGAACATTATCGAAGAC +
Preference number: 4 (lower is better)
Translates to: EGTQPSLQASTFGVLQILARLLR*MNIIED
Trigger: GTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 72 bp ATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATaGAGGACACATTCTTTCACTGGGCCAGAGAGGGGA +
Preference number: 4 (lower is better)
Translates to: MQPTFQAHQQEP*RTHSFTGPERG
Trigger: TCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATACAGGAAGTTCCAAAGTaGCGCTTCTCCTGCACGTAC +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIQEVPK*RFSCTY
Trigger: GTACGTGCAGGAGAAGCGTCACTTTGGAACTTCCTG...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp AGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGGTCGCTGGACGTGGATaGGGTGGGCATAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: SKDEGQEIVCFSVTADNLVAGRG*GGHRAG
Trigger: TCCAGCCCTATGCCCACCTCATCCACGTCCAGCGAC...CAGATTGTCAGCTGTTACAGAAAAACAGACTATCTCCTGACCCTCATCTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR TCA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAACCCTGCCACAGACCTaGTGGGGGATGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: GWEFFENSLLEDALLNSKTLPQT*WGMSRW
Trigger: CCAGCGACTCATCCCCCATCAGGTCTGTGGCAGGGT...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR TCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGACGTAGTTCTCTGGGATaGGGCCAGTCTTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRRSSLG*GQSFHS
Trigger: TGAATGGAAAGACTGGCCTCATCCCAGAGAACTACG...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAAAATGTTTTTCTAAGGTaGCGCAGTACTTCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQNVFLR*RSTSRS
Trigger: AGACCGAGAAGTACTGCGGCACCTTAGAAAAACATT...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAACGCTCAGCAACTTCTaGACCCTGGAGTTGACCCCC +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPETLSNF*TLELTP
Trigger: GGGGGTCAACTCCAGGGTGCAGAAGTTGCTGAGCGT...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGATTCTGTCTCAGAAGCTaGTTTGGGGTCCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRFCLRS*FGVHQD
Trigger: GTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAA...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GTGAGAGATTGGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTCACCACGCCCAGGTTTaGCACAGTCATCAGATTCTG +
Preference number: 4 (lower is better)
Translates to: VRDWTIYKQCGNPFILCAHHAQV*HSHQIL
Trigger: CAGAATCTGATGACTGTGGCAAACCTGGGCGTGGTG...AGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp AAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTCCTTCCGGAATGGTGTaGTGGAGTCTTCACGGACCG +
Preference number: 4 (lower is better)
Translates to: KEAVDHQFVEMCSEASMCPSGMV*WSLHGP
Trigger: CGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGG...ACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGTGTCATACTTCTTTTTaGCTTCCCTGGCGGCCCCAA +
Preference number: 4 (lower is better)
Translates to: SNQGQLRRERICIQAVVLCHTSF*LPWRPQ
Trigger: TTGGGGCCGCCAGGGAAGCCAAAAAGAAGTATGACA...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGACGATGGACAAGACTGTaGATCTCAGACACTCGAGTC +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRRWTRL*ISDTRV
Trigger: GACTCGAGTGTCTGAGATCCACAGTCTTGTCCATCG...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGCAACATTGGCCAGGTaGTTCATGAGCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIATLAR*FMSSCN
Trigger: GTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGC...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GTGAGAGATTGGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGGATGGGGGCTTaGAGTCACTGCTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: VRDWTIYKQCGNPFILCACRMGA*SHCFSS
Trigger: GGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCA...AGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAGATGGTGCCGAGAACATaGGCCATGATGGCGAGAGGG +
Preference number: 4 (lower is better)
Translates to: RQLTISLWKCALKLRCVKMVPRT*AMMARG
Trigger: CCCTCTCGCCATCATGGCCCATGTTCTCGGCACCAT...CTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGATTCCACGTAGTTCTCTaGGATGAGGCCAGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRFHVVL*DEASLS
Trigger: GGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAA...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAATCTTCAGAGCACTGGTaGCGGTCTTTATCTCCCATT +
Preference number: 4 (lower is better)
Translates to: PSERLLESVTVCPESLYQSSEHW*RSLSPI
Trigger: AATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGA...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp GAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGTTAACAGTTGATTCTCTCGTAGCTGGGCGTTGGTaGGGGGCACATCAGGCACCG +
Preference number: 4 (lower is better)
Translates to: EIVCFSVTADNLLTVDSLVAGRW*GAHQAP
Trigger: CGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTAC...GAGAGAATCAACTGTTAACAGATTGTCAGCTGTTACAGAAAAACAGACTATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR TCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCAAGAGGACCAAGCCAATaGGAGAACAACGGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPRGPSQ*ENNGSN
Trigger: GTTGCTGCCGTTGTTCTCTCATTGGCTTGGTCCTCT...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR GCA 90 bp TCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTCTCATGCAAACTTCCGCTTTaGCGAAGACAAATTCTTGAG +
Preference number: 4 (lower is better)
Translates to: SQMHLCWQEATVGLPAFSCKLPL*RRQILE
Trigger: CTCAAGAATTTGTCTTCGGCAAAGCGGAAGTTTGCA...TGAGAAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAATGGTTCATGAGCAGCTaGAACATCTGCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: PSERLLESVTVCPESLYQWFMSS*NICRFF
Trigger: GAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCA...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp CCATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAACTGTCAAAAAGCAAGTaGAGGTTTGGATGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: PSERLLESVTVCPESLYQLSKSK*RFGWQG
Trigger: TCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAG...TTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGAGAATCGCTTCTCGATaGAGTCTGTCTTTCGCCGTG +
Preference number: 4 (lower is better)
Translates to: GWVLGWQQYNPELVNSILRIASR*SLSFAV
Trigger: CACGGCGAAAGACAGACTCCATCGAGAAGCGATTCT...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAAGAATCGCTTCTCGATaGAGTCTGTCTTTCGCCGTG +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIRIASR*SLSFAV
Trigger: CACGGCGAAAGACAGACTCCATCGAGAAGCGATTCT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTTCTCAGAAGCTGCTTTaGGGTCCATCAGGACGCTCA +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLSQKLL*GPSGRS
Trigger: TGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGA...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTTTCTCCGGGAGCCGATaGACAAGACTGTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLFSGSR*TRLWIS
Trigger: TGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAA...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTGCAACATTGGCCAGGTaGTTCATGAGCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: RERICIQAVVLGPDYKHSATLAR*FMSSCN
Trigger: GTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGC...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGACTGTTTTTCTGTGGATaGCACAGCATGGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRLFFCG*HSMEER
Trigger: ACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAG...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGGCTCCTGTTTTTCTGTaGATGGCACAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRAPVFL*MAQHGR
Trigger: TCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGC...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTTGCCTTCCGGAATaGTGTGCTGGAGTCTTCACG +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLLCLPE*CAGVFT
Trigger: CGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAG...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGAAGACAGCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATGGCCTCCTCTTCCACGTAGTTCTCTaGGATGAGGCCAGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: RRQLCKPSSGLSKSNGLLFHVVL*DEASLS
Trigger: GGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAA...GAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 72 bp TTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTaGGCGTCCTACAGATTCTTAATGGCCTATCCTATT +
Preference number: 4 (lower is better)
Translates to: LKVPSLASRPQH*ASYRFLMAYPI
Trigger: AATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 72 bp TGTGATGCTTGTCCTTGTAATGAGAATTCCCTCTCTTaGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACAT +
Preference number: 4 (lower is better)
Translates to: CDACPCNENSLS*KVPSLASRPQH
Trigger: ATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGGGAATTCTCATTACAAGGACAAGCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
3UTR CAA 72 bp GTGTGTGTGTCTACACCCGAGGCGGCACCTTTATGCTaGTATGTGCTATGTACGAACACATACACACCAACA +
Preference number: 4 (lower is better)
Translates to: VCVSTPEAAPLC*YVLCTNTYTPT
Trigger: TGTTGGTGTGTATGTGTTCGTACATAGCACATACAAGCATAAAGGTGCCGCCTCGGGTGTAGACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR TCA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATCGATGACAATGTTCTaGAACTTGATGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: SLKVPSLASRPQHLASYRSMTMF*NLMSMM
Trigger: CATCATGGACATCAAGTTTCAGAACATTGTCATCGA...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCGTAGTTCTCTGGGATaGGGCCAGTCTTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLRSSLG*GQSFHS
Trigger: TGAATGGAAAGACTGGCCTCATCCCAGAGAACTACG...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp GAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGTTAACAGTTGATTCTCTCCCGCTTCTTCTGGCCTaGTGGGGGATGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: EIVCFSVTADNLLTVDSLPLLLA*WGMSRW
Trigger: CCAGCGACTCATCCCCCATCAGGCCAGAAGAAGCGG...GAGAGAATCAACTGTTAACAGATTGTCAGCTGTTACAGAAAAACAGACTATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR GCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATAATGTTTTTCTAAGGTaGCGCAGTACTTCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHNVFLR*RSTSRS
Trigger: AGACCGAGAAGTACTGCGGCACCTTAGAAAAACATT...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCTCAGGGGCCTCTTGCTaGAGGATGGGGGCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVSGASC*RMGAWS
Trigger: ACTCCAAGCCCCCATCCTGCAGCAAGAGGCCCCTGA...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR GCA 90 bp CGCCCTCACCCCACCTATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTTGGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTC +
Preference number: 4 (lower is better)
Translates to: RPHPTYLNPEILSVTLLLVKDAV*TRGDRF
Trigger: GAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAAC...CAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATAGGTGGGGTGAGGGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTC +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIVKDAV*TRGDRF
Trigger: GAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAAC...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTAAACCAAACAAACCCTaGCACAGACCTGATGGGGGA +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLKPNKP*HRPDGG
Trigger: TCCCCCATCAGGTCTGTGGCAGGGTTTGTTTGGTTT...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTTGTCATACTTCTTTTTaGCTTCCCTGGCGGCCCCAA +
Preference number: 4 (lower is better)
Translates to: RERICIQAVVLGPDYKHSCHTSF*LPWRPQ
Trigger: TTGGGGCCGCCAGGGAAGCCAAAAAGAAGTATGACA...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAATCTCAGAAGCTGCTTTaGGGTCCATCAGGACGCTCA +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPESQKLL*GPSGRS
Trigger: TGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGA...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTTTCTCCGGGAGCCGATaGACAAGACTGTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFFSGSR*TRLWIS
Trigger: TGAGATCCACAGTCTTGTCCATCGGCTCCCGGAGAA...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATATCAGATTCTGCTTGTaGTTGTTAGCAACATTGGCC +
Preference number: 4 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHIRFCL*LLATLA
Trigger: GGCCAATGTTGCTAACAACCACAAGCAGAATCTGAT...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAATGCAGGATGGGGGCTTaGAGTCACTGCTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPECRMGA*SHCFSS
Trigger: GGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCA...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCGTGGATGGCACAGCATaGAAGAGCGTCAGGGGCCTC +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVVDGTA*KSVRGL
Trigger: GAGGCCCCTGACGCTCTTCCATGCTGTGCCATCCAC...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp TCTTGCTCTCAGGGTGGCTCACCTTTCCTTCCTGATCCGGGTGTTTTTATATCTCTGTTTTTCTGTGGATaGCACAGCATGGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: SCSQGGSPFLPDPGVFISLFFCG*HSMEER
Trigger: ACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAG...AGATATAAAAACACCCGGATCAGGAAGGAAAGGTGAGCCACCCTGAGAGCAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGGCTCCTGTTTTTCTGTaGATGGCACAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: GWVLGWQQYNPELVNSILAPVFL*MAQHGR
Trigger: TCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGC...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCGGGCATAGGGCTGGATaGTGCCGAGAACATGGGCCA +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVGHRAG*CREHGP
Trigger: TGGCCCATGTTCTCGGCACCATCCAGCCCTATGCCC...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTACGGACCGCTTCTTCTaGCCTGTCAAAAAGCAAGTG +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLTDRFF*PVKKQV
Trigger: CACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGT...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp AAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTCTTTGCCTTCCGGAATaGTGTGCTGGAGTCTTCACG +
Preference number: 4 (lower is better)
Translates to: KEAVDHQFVEMCSEASMCLCLPE*CAGVFT
Trigger: CGTGAAGACTCCAGCACACCATTCCGGAAGGCAAAG...ACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR TCA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTTTGATGAAACTTCTTTaGAACTGGTACATCATGAGG +
Preference number: 4 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFLMKLL*NWYIMR
Trigger: CCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAA...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCACTCTCTTGCACTTCCTaGACCTTAAAGACATACTCC +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSLSCTS*TLKTYS
Trigger: GGAGTATGTCTTTAAGGTGCAGGAAGTGCAAGAGAG...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTTTCTGTCTCAGAAGCTaGTTTGGGGTCCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: PTQQRCTFFSTILILLLLFCLRS*FGVHQD
Trigger: GTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAA...AAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCATGGTTCATGAGCAGCTaGAACATCTGCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPWFMSS*NICRFF
Trigger: GAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCA...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp AGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGGGGGCTTGGAGTCACTaGTTTTCTTCCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: SKDEGQEIVCFSVTADNLGAWSH*FSSGTG
Trigger: ACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCCCC...CAGATTGTCAGCTGTTACAGAAAAACAGACTATCTCCTGACCCTCATCTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCATCTGCCTCCTGTAGCTaGGATTCCTTCTTTTTGGAA +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSSASCS*DSFFLE
Trigger: TTCCAAAAAGAAGGAATCCCAGCTACAGGAGGCAGA...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GTGAGAGATTGGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTAGTCACCAAAATCCTTaGCCAGCTCATAACCATGGT +
Preference number: 4 (lower is better)
Translates to: VRDWTIYKQCGNPFILCASHQNP*PAHNHG
Trigger: ACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACT...AGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATGACACTCGAGTCTCTTaGTTTTCCAGCTTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHDTRVS*FSSFAA
Trigger: AGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTC...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp AGTAATGAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGTGGGGGATGAGTCGCTaGACGTGGATGAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SNELLRKQCVKSKDEGQEWGMSR*TWMRWA
Trigger: TGCCCACCTCATCCACGTCCAGCGACTCATCCCCCA...CTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTCATTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCAAAGCAAGTGCAGGTTTaGATGGCAGGGAACAAAGTT +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSKQVQV*MAGNKV
Trigger: AACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTT...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CCA 90 bp AGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAGTGCCAGGCTCCTGAGATaGATGAACATTATCGAAGAC +
Preference number: 4 (lower is better)
Translates to: RERICIQAVVLGPDYKHSARLLR*MNIIED
Trigger: GTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC...ACTATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATACGTCTTCAAGATTCCTaGGAACAGCAGCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: GEKEYVSKQSCWALTTSIRLQDS*EQQQIL
Trigger: AAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACG...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp AGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAGGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: RQLTISLWKCALKLRCVKDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...CTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR TCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGCGTAGTTCTCTGGGATaGGGCCAGTCTTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: QASTFGVLQILNGLSYLMRSSLG*GQSFHS
Trigger: TGAATGGAAAGACTGGCCTCATCCCAGAGAACTACG...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAACAGCAGCAAATTCTTaGAAAGATCTCGCTATACAC +
Preference number: 4 (lower is better)
Translates to: GPYINSAATPSSCVLADRTAANS*KDLAIH
Trigger: GTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGT...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAAAAGTGAAGAGTCCTTaGAGGAAGGCCAGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: GWEFFENSLLEDALLNSKKVKSP*RKASRG
Trigger: GCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTT...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGTCTTCCGACAACGCCTaGATGGTGATAACCCCTGGC +
Preference number: 4 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWSSDNA*MVITPG
Trigger: GCCAGGGGTTATCACCATGCAGGCGTTGTCGGAAGA...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTC +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPEVKDAV*TRGDRF
Trigger: GAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAAC...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCACTGGTCTCCACCGCATaGATGCATTTCCTTATTATG +
Preference number: 4 (lower is better)
Translates to: ACVSLHERTGLKSADYRPLVSTA*MHFLIM
Trigger: CATAATAAGGAAATGCATCCATGCGGTGGAGACCAG...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAATCTCAGAAGCTGCTTTaGGGTCCATCAGGACGCTCA +
Preference number: 4 (lower is better)
Translates to: GWEFFENSLLEDALLNSKSQKLL*GPSGRS
Trigger: TGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGA...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGTTAACAGTTGATTCTCTCCCTCTTGCTGCAGGATaGGGGCTTGGAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: EIVCFSVTADNLLTVDSLPLAAG*GLGVTA
Trigger: AGCAGTGACTCCAAGCCCCCATCCTGCAGCAAGAGG...GAGAGAATCAACTGTTAACAGATTGTCAGCTGTTACAGAAAAACAGACTATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTCTGTTTTTCTGTGGATaGCACAGCATGGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFLFFCG*HSMEER
Trigger: ACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAG...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGTTAACAGTTGATTCTCTCATGGTGCCGAGAACATaGGCCATGATGGCGAGAGGG +
Preference number: 4 (lower is better)
Translates to: EIVCFSVTADNLLTVDSLMVPRT*AMMARG
Trigger: CCCTCTCGCCATCATGGCCCATGTTCTCGGCACCAT...GAGAGAATCAACTGTTAACAGATTGTCAGCTGTTACAGAAAAACAGACTATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAGCCAGGCTCCTGAGATaGATGAACATTATCGAAGAC +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPEARLLR*MNIIED
Trigger: GTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGTTCCACGTAGTTCTCTaGGATGAGGCCAGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: QASTFGVLQILNGLSYLMFHVVL*DEASLS
Trigger: GGAAAGACTGGCCTCATCCCAGAGAACTACGTGGAA...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGTCTTCAGAGCACTGGTaGCGGTCTTTATCTCCCATT +
Preference number: 4 (lower is better)
Translates to: QASTFGVLQILNGLSYLMSSEHW*RSLSPI
Trigger: AATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGA...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGTTGATGAAACTTCTTTaGAACTGGTACATCATGAGG +
Preference number: 4 (lower is better)
Translates to: SNQGQLRRERICIQAVVLLMKLL*NWYIMR
Trigger: CCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAA...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCAACAGCAGCAAATTCTTaGAAAGATCTCGCTATACAC +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSTAANS*KDLAIH
Trigger: GTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGT...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAATCTGCCTCCTGTAGCTaGGATTCCTTCTTTTTGGAA +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPESASCS*DSFFLE
Trigger: TTCCAAAAAGAAGGAATCCCAGCTACAGGAGGCAGA...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATATCAGATTCTGCTTGTaGTTGTTAGCAACATTGGCC +
Preference number: 4 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHIRFCL*LLATLA
Trigger: GGCCAATGTTGCTAACAACCACAAGCAGAATCTGAT...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCTGCAGGATGGGGGCTTaGAGTCACTGCTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVCRMGA*SHCFSS
Trigger: GGAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCA...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR TCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTTCGATGACAATGTTCTaGAACTTGATGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLSMTMF*NLMSMM
Trigger: CATCATGGACATCAAGTTTCAGAACATTGTCATCGA...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATAAAGTGAAGAGTCCTTaGAGGAAGGCCAGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYKVKSP*RKASRG
Trigger: GCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTT...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR GCA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCATTGGTTTTCCAGCTTTaGTGCTTTGATGAAACTTCT +
Preference number: 4 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSLVFQL*CFDETS
Trigger: AGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAA...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGCTGGTCTCCACCGCATaGATGCATTTCCTTATTATG +
Preference number: 4 (lower is better)
Translates to: QASTFGVLQILNGLSYLMLVSTA*MHFLIM
Trigger: CATAATAAGGAAATGCATCCATGCGGTGGAGACCAG...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR TCA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTTTGATGAAACTTCTTTaGAACTGGTACATCATGAGG +
Preference number: 4 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLLMKLL*NWYIMR
Trigger: CCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAA...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCGACCACATCCAGGTTTaGGTCGCTGGAATTCAGATT +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVDHIQV*VAGIQI
Trigger: AATCTGAATTCCAGCGACTCAAACCTGGATGTGGTC...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR GCA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAAACATCTTTCTCTCTTaGACTTCCTGCACCTTAAAG +
Preference number: 4 (lower is better)
Translates to: SSDALSLALFSSCFFFPENIFLS*TSCTLK
Trigger: CTTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTT...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATGTTTTCCAGCTTTGCTaGTTTGATGAAACTTCTTTG +
Preference number: 4 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHVFQLC*FDETSL
Trigger: CAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAAC...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR GCA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTTTGGTTTTCCAGCTTTaGTGCTTTGATGAAACTTCT +
Preference number: 4 (lower is better)
Translates to: PLPTQQRCTFFSTILILLLVFQL*CFDETS
Trigger: AGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAA...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CCA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAACTGGTCTCCACCGCATaGATGCATTTCCTTATTATG +
Preference number: 4 (lower is better)
Translates to: GWEFFENSLLEDALLNSKLVSTA*MHFLIM
Trigger: CATAATAAGGAAATGCATCCATGCGGTGGAGACCAG...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CCA 90 bp GAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCGCTCCTGTTTTTCTGTaGATGGCACAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: ELLRKQCVKSKDEGQEIVAPVFL*MAQHGR
Trigger: TCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGC...GACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
3UTR CAA 72 bp TGGAACTCTCTATCTCAGAGAGTAAGACCAACCATCTaGATGCTCCAAAATTCAAACCATAACCAACCCATC +
Preference number: 4 (lower is better)
Translates to: WNSLSQRVRPTI*MLQNSNHNQPI
Trigger: GATGGGTTGGTTATGGTTTGAATTTTGGAGCATCAAGATGGTTGGTCTTACTCTCTGAGATAGAGAGTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTGTTTTCCAGCTTTGCTaGTTTGATGAAACTTCTTTG +
Preference number: 4 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFVFQLC*FDETSL
Trigger: CAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAAC...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR GCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATTGGTTCATGAGCAGCTaGAACATCTGCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYWFMSS*NICRFF
Trigger: GAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCA...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR GCA 90 bp AGTAATGAACTACTAAGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTC +
Preference number: 4 (lower is better)
Translates to: SNELLRKQCVKSKDEGQEVKDAV*TRGDRF
Trigger: GAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAAC...CTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCTTAGTAGTTCATTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp AGAAAACAGTGTGTTAAGAGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTCTGTTTTTCTGTGGATaGCACAGCATGGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: RKQCVKSKDEGQEIVCFSLFFCG*HSMEER
Trigger: ACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAG...AGAAAAACAGACTATCTCCTGACCCTCATCTTTACTCTTAACACACTGTTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGATCAGATTCTGCTTGTaGTTGTTAGCAACATTGGCC +
Preference number: 4 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWIRFCL*LLATLA
Trigger: GGCCAATGTTGCTAACAACCACAAGCAGAATCTGAT...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR TCA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATCGTCTTCAAGATTCCTaGGAACAGCAGCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYRLQDS*EQQQIL
Trigger: AAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACG...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
3UTR CAA 72 bp TATTTAAATCCTGAGATCCTGAGTGTCACTTTACTGTaGGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: YLNPEILSVTLL*GGSSLKIHCLK
Trigger: CTTCAAGCAGTGAATTTTCAAAGAACTCCCACCCAACAGTAAAGTGACACTCAGGATCTCAGGATTTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
3UTR CAA 72 bp AACTTTAATCACAAAAAGAGGCAGTTGACCATCAGTTaGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAG +
Preference number: 4 (lower is better)
Translates to: NFNHKKRQLTIS*WKCALKLRCVK
Trigger: CTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTTTTGTGATTAAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR GCA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGTTGGTTTTCCAGCTTTaGTGCTTTGATGAAACTTCT +
Preference number: 4 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWLVFQL*CFDETS
Trigger: AGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAA...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAAGCGTCAGGGGCCTCTaGCTGCAGGATGGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: GGRPSWTKGNRATICHRPSVRGL*LQDGGL
Trigger: CAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCT...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATAGCGTCAGGGGCCTCTaGCTGCAGGATGGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: SSESCSAWQAYKAFAFRNSVRGL*LQDGGL
Trigger: CAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCT...ATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS CCA 90 bp AAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTaGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGCTGATG +
Preference number: 5 (lower is better)
Translates to: KTVPAVKESSESCSA*QAYKAFAFRNGVLM
Trigger: CATCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155576.8
CDS CCA 90 bp AAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTTaGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGAGTGAA +
Preference number: 5 (lower is better)
Translates to: KTVPAVKESSESCSA*QAYKAFAFRNGVSE
Trigger: TTCACTCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137497.9
CDS TCA 90 bp AGACAGGGTCTCCCATGGAATCATTATCGAAGACGGTGCCCGCTGTaGAGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGGCGTACAAAG +
Preference number: 5 (lower is better)
Translates to: RQGLPWNHYRRRCPL*RRAPSRAQLGRRTK
Trigger: CTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGATTCCATGGGAGACCCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS GCA 90 bp TCATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTaGTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGT +
Preference number: 5 (lower is better)
Translates to: SLSKTVPAVKESSES*SAWQAYKAFAFRNG
Trigger: ACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CAA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAGAAAGTGAAGAGTCCTaGCAGGAAGGCCAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: GGRPSWTKGNRATICHRPESEES*QEGQQR
Trigger: CCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTC...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp TCAAACCAGGGCCAGCTCAGGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGAGCGTCAGGGGCCTCTaGCTGCAGGATGGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: SNQGQLRRERICIQAVVLSVRGL*LQDGGL
Trigger: CAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCT...CAGCACGACTGCTTGGATACATATTCTTTCTCTCCTGAGCTGGCCCTGGTTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAAGCGTCAGGGGCCTCTaGCTGCAGGATGGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: GPYINSAATPSSCVLADRSVRGL*LQDGGL
Trigger: CAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCT...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp AGTGGGTGCCAGGGCAAATGTGTGGTCACTGGTGCACCCCCAAGCTCGCTGGCTGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: SGCQGKCVVTGAPPSSLADSKLE*MMLFLC
Trigger: GCAGAGGAACAGCATCATCAACTCCAGTTTGGAATC...AGCCAGCGAGCTTGGGGGTGCACCAGTGACCACACATTTGCCCTGGCACCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTCTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: RVVLSLAGVQSLCLPEWCLGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...ACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS TCA 90 bp TCCAAGGCAAGCAGCCTTGGAGCTGCTTCGGACCACATACCTGAGTaGGGATGGTGTAGAGGTGGTCTTCCCAGCCAACCAGTTTCCTGT +
Preference number: 5 (lower is better)
Translates to: SKASSLGAASDHIPE*GWCRGGLPSQPVSC
Trigger: ACAGGAAACTGGTTGGCTGGGAAGACCACCTCTACACCATCCTCACTCAGGTATGTGGTCCGAAGCAGCTCCAAGGCTGCTTGCCTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148850.8
CDS-3UTR CAA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAGAAAGTGAAGAGTCCTaGCAGGAAGGCCAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLESEES*QEGQQR
Trigger: CCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTC...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTGTCTCAGAAGCTGCTTaGGGGTCCATCAGGACGCTC +
Preference number: 5 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFVSEAA*GSIRTL
Trigger: GAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGAC...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTGAAGGACTGCAGGATGGGGGCTaGGAGTCACTGCTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: ARLLRWMNIIEDGARCEGLQDGG*ESLLFF
Trigger: GAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAG...TCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CAA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTCTGCAGGATGGGGGCTaGGAGTCACTGCTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: EGTQPSLQASTFGVLQILLQDGG*ESLLFF
Trigger: GAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAG...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGAAGGCGTACAAAGCCTTaGCCTTCCGGAATGGTGTGC +
Preference number: 5 (lower is better)
Translates to: SLKVPSLASRPQHLASYRRRTKP*PSGMVC
Trigger: GCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCT...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GCCAGGCTCCTGAGATGGATGAACATTATCGAAGACGGTGCCCGCTGTGAAGGATGGCAGGGAACAAAGTaGACGAGGAGGCTGAACAAG +
Preference number: 5 (lower is better)
Translates to: ARLLRWMNIIEDGARCEGWQGTK*TRRLNK
Trigger: CTTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCA...TCCTTCACAGCGGGCACCGTCTTCGATAATGTTCATCCATCTCAGGAGCCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS GCA 90 bp TGCTTGTGGTTGTTAGCAACATTGGCCAGGTGGTTCATGAGCAGCTaGAACATCTGCCGATTCTTCTCCGGGAGCCGATGGACAAGACTG +
Preference number: 5 (lower is better)
Translates to: CLWLLATLARWFMSS*NICRFFSGSRWTRL
Trigger: CAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGTTGCTAACAACCACAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS GCA 90 bp CTGGAGTCTTCACGGACCGCTTCTTCTGGCCTGTCAAAAAGCAAGTaGAGGTTTGGATGGCAGGGAACAAAGTTGACGAGGAGGCTGAAC +
Preference number: 5 (lower is better)
Translates to: LESSRTASSGLSKSK*RFGWQGTKLTRRLN
Trigger: GTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGTGAAGACTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS CCA 90 bp ATTATGCTGAAGCCGATACTGTCCAATTGTGCGGTCCCTTCGCTCTaGCTGTCTCTGTTGGAGTTGTACACAGGTTCCCGGCCATCCATG +
Preference number: 5 (lower is better)
Translates to: IMLKPILSNCAVPSL*LSLLELYTGSRPSM
Trigger: CATGGATGGCCGGGAACCTGTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS CCA 90 bp TGCCTTCCGGAATGGTGTGCTGGAGTCTTCACGGACCGCTTCTTCTaGCCTGTCAAAAAGCAAGTGCAGGTTTGGATGGCAGGGAACAAA +
Preference number: 5 (lower is better)
Translates to: CLPEWCAGVFTDRFF*PVKKQVQVWMAGNK
Trigger: TTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGTGAAGACTCCAGCACACCATTCCGGAAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp ATCAGAGAGGCTCCTGGAAAGTGTGACAGTTTGTCCAGAGTCCCTCTATCAAGGGTCTCAGAAGCTGCTTaGGGGTCCATCAGGACGCTC +
Preference number: 5 (lower is better)
Translates to: IREAPGKCDSLSRVPLSRVSEAA*GSIRTL
Trigger: GAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGAC...CCTTGATAGAGGGACTCTGGACAAACTGTCACACTTTCCAGGAGCCTCTCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp ACGTTCCCAGATGCATTTGTGTTGGCAGGAAGCAACAGTCGGGCTCCCTGCTTTACACCACGCCCAGGTTaGCCACAGTCATCAGATTCT +
Preference number: 5 (lower is better)
Translates to: TFPDAFVLAGSNSRAPCFTPRPG*PQSSDS
Trigger: AGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGT...AAAGCAGGGAGCCCGACTGTTGCTTCCTGCCAACACAAATGCATCTGGGAACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GGAGGGAGGCCTAGCTGGACAAAGGGAAACAGAGCGACCATCTGTCATAGGCCAGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: GGRPSWTKGNRATICHRPDSKLE*MMLFLC
Trigger: GCAGAGGAACAGCATCATCAACTCCAGTTTGGAATC...TGGCCTATGACAGATGGTCGCTCTGTTTCCCTTTGTCCAGCTAGGCCTCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CGAGTCGTGCTCAGCTTGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: RVVLSLAGVQSLCLPEWCDSKLE*MMLFLC
Trigger: GCAGAGGAACAGCATCATCAACTCCAGTTTGGAATC...ACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS-3UTR CAA 90 bp ACATTATCGAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTAAAGCAAGTGCAGGTTaGGATGGCAGGGAACAAAGT +
Preference number: 5 (lower is better)
Translates to: TLSKTVPAVKESSESCSAKASAG*DGREQS
Trigger: ACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTT...AGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151757.8
CDS GCA 90 bp CTCGAGGAGACCGATTCCAAACTGGAGTTGATGATGCTGTTCCTCTaGTCCTGTTTTTCTGTGGATGGCACAGCATGGAAGAGCGTCAGG +
Preference number: 5 (lower is better)
Translates to: LEETDSKLELMMLFL*SCFSVDGTAWKSVR
Trigger: CCTGACGCTCTTCCATGCTGTGCCATCCACAGAAAAACAGGAGCAGAGGAACAGCATCATCAACTCCAGTTTGGAATCGGTCTCCTCGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS GCA 90 bp GGTTTGACCACATCCAGGTTTGAGTCGCTGGAATTCAGATTGGGCTaGAGGCTGCTGCTAGAGTTAAGGATGCTGTTTGCACTCGAGGAG +
Preference number: 5 (lower is better)
Translates to: GLTTSRFESLEFRLG*RLLLELRMLFALEE
Trigger: CTCCTCGAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAATTCCAGCGACTCAAACCTGGATGTGGTCAAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CCA 90 bp TTCACGGACCGCTTCTTCTGGCCTGTCAAAAAGCAAGTGCAGGTTTaGATGGCAGGGAACAAAGTTGACGAGGAGGCTGAACACTGCATG +
Preference number: 5 (lower is better)
Translates to: FTDRFFWPVKKQVQV*MAGNKVDEEAEHCM
Trigger: CATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATGGTTGTTAGCAACATaGGCCAGGTGGTTCATGAGC +
Preference number: 5 (lower is better)
Translates to: SLKVPSLASRPQHLASYRWLLAT*ARWFMS
Trigger: GCTCATGAACCACCTGGCCAATGTTGCTAACAACCA...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAAGATTCTGCTTGTGGTaGTTAGCAACATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLRFCLW*LATLAR
Trigger: CCTGGCCAATGTTGCTAACAACCACAAGCAGAATCT...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp CCTCTCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTAGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: PLFEGTQPSLQASTFGVLDSKLE*MMLFLC
Trigger: GCAGAGGAACAGCATCATCAACTCCAGTTTGGAATC...TAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GTGAGAGATTGGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTCTGCAGGATGGGGGCTaGGAGTCACTGCTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: VRDWTIYKQCGNPFILCALQDGG*ESLLFF
Trigger: GAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAG...AGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCCAATCTCTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp AGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGAGCGTCAGGGGCCTCTaGCTGCAGGATGGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: SKDEGQEIVCFSVTADNLSVRGL*LQDGGL
Trigger: CAAGCCCCCATCCTGCAGCAAGAGGCCCCTGACGCT...CAGATTGTCAGCTGTTACAGAAAAACAGACTATCTCCTGACCCTCATCTTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS TCA 90 bp TTTGGATGGCAGGGAACAAAGTTGACGAGGAGGCTGAACACTGCATaGAGAGAGGACCAAGCCAATGAGAGAACAACGGCAGCAACAGAA +
Preference number: 5 (lower is better)
Translates to: FGWQGTKLTRRLNTA*REDQANERTTAATE
Trigger: TTCTGTTGCTGCCGTTGTTCTCTCATTGGCTTGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp GGCTGGGTCCTTGGTTGGCAACAGTATAATCCTGAGCTGGTAAACTCAATACTGTTGTCATACTTCTTTTaGGCTTCCCTGGCGGCCCCA +
Preference number: 5 (lower is better)
Translates to: GWVLGWQQYNPELVNSILLSYFF*ASLAAP
Trigger: TGGGGCCGCCAGGGAAGCCAAAAAGAAGTATGACAA...CAGTATTGAGTTTACCAGCTCAGGATTATACTGTTGCCAACCAAGGACCCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AATGCAACCAACTTTCCAGGCTCACCAACAGGAACCATTGAGGACACATTCTTTGTCTCAGAAGCTGCTTaGGGGTCCATCAGGACGCTC +
Preference number: 5 (lower is better)
Translates to: NATNFPGSPTGTIEDTFFVSEAA*GSIRTL
Trigger: GAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGAC...AAAGAATGTGTCCTCAATGGTTCCTGTTGGTGAGCCTGGAAAGTTGGTTGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AGCAGTAGAGGCAGCCTGCACCTTGTGCCAGTTTCTTTGCCCTGCCTCTTCCAAGTCATCAGATTCTGCTaGTGGTTGTTAGCAACATTG +
Preference number: 5 (lower is better)
Translates to: SSRGSLHLVPVSLPCLFQVIRFC*WLLATL
Trigger: CAATGTTGCTAACAACCACAAGCAGAATCTGATGAC...TTGGAAGAGGCAGGGCAAAGAAACTGGCACAAGGTGCAGGCTGCCTCTACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATTCTTACATCAGGCACCGTGTaGAATATCTTCTCATGGTTC +
Preference number: 5 (lower is better)
Translates to: EGTQPSLQASTFGVLQILTSGTV*NIFSWF
Trigger: GAACCATGAGAAGATATTCAACACGGTGCCTGATGT...AAGAATCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATCTGCAGGATGGGGGCTaGGAGTCACTGCTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHLQDGG*ESLLFF
Trigger: GAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAG...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATCTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHLGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: PLPTQQRCTFFSTILILLLGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS GCA 90 bp ATTCAGATTGGGCTGCAGGCTGCTGCTAGAGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTCCAAACTGGAGTTGATGATGCTGTT +
Preference number: 5 (lower is better)
Translates to: IQIGLQAAARVKDAV*TRGDRFQTGVDDAV
Trigger: AACAGCATCATCAACTCCAGTTTGGAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS-3UTR CAA 90 bp TCTTTGAAGGTACCCAGCCTAGCCTCCAGGCCTCAACATTTGGCGTCCTACAGATCCTTGATGAGCTCCTaGATGAATTTGTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: SLKVPSLASRPQHLASYRSLMSS*MNLLVL
Trigger: CAAGACCAACAAATTCATCAAGGAGCTCATCAAGGA...TCTGTAGGACGCCAAATGTTGAGGCCTGGAGGCTAGGCTGGGTACCTTCAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CACCAACAGGAACCATTGAGGACACATTCTTTCACTGGGCCAGAGAGGGGACATTTGTTTGGAATCCCGTaGGTAGGTACAGTAGTGCTT +
Preference number: 5 (lower is better)
Translates to: HQQEPLRTHSFTGPERGHLFGIP*VGTVVL
Trigger: AAGCACTACTGTACCTACCAACGGGATTCCAAACAA...ATGTCCCCTCTCTGGCCCAGTGAAAGAATGTGTCCTCAATGGTTCCTGTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAACTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: SSDALSLALFSSCFFFPELGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp AAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTACTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: KRQLTISLWKCALKLRCVLGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...TACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CAA 90 bp CAAAAAGAGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGAGGCGTACAAAGCCTTaGCCTTCCGGAATGGTGTGC +
Preference number: 5 (lower is better)
Translates to: QKEAVDHQFVEMCSEASMRRTKP*PSGMVC
Trigger: GCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCT...CATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCTCTTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS TCA 90 bp AGTCACCAAAATCCTTGGCCAGCTCATAACCATGGTGATAGAAAGTaGAGAGTCCTTGCAGGAAGGCCAGCAGAGGCTCTACAAACTCAA +
Preference number: 5 (lower is better)
Translates to: SHQNPWPAHNHGDRK*RVLAGRPAEALQTQ
Trigger: TTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATTTTGGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS-3UTR CAA 90 bp GCGTGTGTTTCTTTGCATGAGAGGACTGGACTGAAATCTGCTGATTATAGGCCATGGTTGTTAGCAACATaGGCCAGGTGGTTCATGAGC +
Preference number: 5 (lower is better)
Translates to: ACVSLHERTGLKSADYRPWLLAT*ARWFMS
Trigger: GCTCATGAACCACCTGGCCAATGTTGCTAACAACCA...TGGCCTATAATCAGCAGATTTCAGTCCAGTCCTCTCATGCAAAGAAACACACGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS TCA 90 bp CGCTGGCATTCTCGATCATTCGACTCCGCTCGTCTTCAAGATTCCTaGGAACAGCAGCAAATTCTTGCAAAGATCTCGCTATACACATCT +
Preference number: 5 (lower is better)
Translates to: RWHSRSFDSARLQDS*EQQQILAKISLYTS
Trigger: AGATGTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAGCGGAGTCGAATGATCGAGAATGCCAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000148850.8
ENSMUST00000155576.8
CDS-3UTR CAA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATAGATTCTGCTTGTGGTaGTTAGCAACATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHRFCLW*LATLAR
Trigger: CCTGGCCAATGTTGCTAACAACCACAAGCAGAATCT...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GGAGAGAAAGAATATGTATCCAAGCAGTCGTGCTGGGCCCTGACTACAAGCATAACATCAGGCACCGTGTaGAATATCTTCTCATGGTTC +
Preference number: 5 (lower is better)
Translates to: GEKEYVSKQSCWALTTSITSGTV*NIFSWF
Trigger: GAACCATGAGAAGATATTCAACACGGTGCCTGATGT...TATGCTTGTAGTCAGGGCCCAGCACGACTGCTTGGATACATATTCTTTCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CTGCTTCTTCTTCCCAGAAGGCTGGGGGTTTGGATGACTGCTGAAATGAAATCAACATCAGGCACCGTGTaGAATATCTTCTCATGGTTC +
Preference number: 5 (lower is better)
Translates to: LLLLPRRLGVWMTAEMKSTSGTV*NIFSWF
Trigger: GAACCATGAGAAGATATTCAACACGGTGCCTGATGT...TGATTTCATTTCAGCAGTCATCCAAACCCCCAGCCTTCTGGGAAGAAGAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp AGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGCTGCAGGATGGGGGCTaGGAGTCACTGCTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: SKDEGQEIVCFSVTADNLLQDGG*ESLLFF
Trigger: GAAGAAAAGCAGTGACTCCAAGCCCCCATCCTGCAG...CAGATTGTCAGCTGTTACAGAAAAACAGACTATCTCCTGACCCTCATCTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CAA 90 bp CAGGCCTCAACATTTGGCGTCCTACAGATTCTTAATGGCCTATCCTATTTAATGTGGCAGGGAACAAAGTaGACGAGGAGGCTGAACACT +
Preference number: 5 (lower is better)
Translates to: QASTFGVLQILNGLSYLMWQGTK*TRRLNT
Trigger: AGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCA...CATTAAATAGGATAGGCCATTAAGAATCTGTAGGACGCCAAATGTTGAGGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp AGGCAGTTGACCATCAGTTTGTGGAAATGTGCTCTGAAGCTTCGATGTGTAAAGTCTCCACCTTATTTCTaGAGACAGGGTCTCCCATGG +
Preference number: 5 (lower is better)
Translates to: RQLTISLWKCALKLRCVKSPPYF*RQGLPW
Trigger: CCATGGGAGACCCTGTCTCAAGAAATAAGGTGGAGA...CTTTACACATCGAAGCTTCAGAGCACATTTCCACAAACTGATGGTCAACTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS-3UTR CAA 90 bp AGAAGACAGCTTTGCAAGCCTTCCTCTGGGTTATCAAAATCCAATGGCCTCCTCTCCTTGATGAGCTCCTaGATGAATTTGTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: RRQLCKPSSGLSKSNGLLSLMSS*MNLLVL
Trigger: CAAGACCAACAAATTCATCAAGGAGCTCATCAAGGA...GAGGAGGCCATTGGATTTTGATAACCCAGAGGAAGGCTTGCAAAGCTGTCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GGACCATATATAAACAGTGCGGCAACCCCTTCATCCTGTGTGCTTGCAGACAGAAAACATCTTTCTCTCTaGCACTTCCTGCACCTTAAA +
Preference number: 5 (lower is better)
Translates to: GPYINSAATPSSCVLADRKHLSL*HFLHLK
Trigger: TTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTT...TCTGTCTGCAAGCACACAGGATGAAGGGGTTGCCGCACTGTTTATATATGGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GTTATCAAAATCCAATGGCCTCCTCTGCTGATTGCTGTGCAGTTCTTGCAGCATTTGTTTGGAATCCCGTaGGTAGGTACAGTAGTGCTT +
Preference number: 5 (lower is better)
Translates to: VIKIQWPPLLIAVQFLQHLFGIP*VGTVVL
Trigger: AAGCACTACTGTACCTACCAACGGGATTCCAAACAA...ATGCTGCAAGAACTGCACAGCAATCAGCAGAGGAGGCCATTGGATTTTGATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAACACCACGCCCAGGTTaGCCACAGTCATCAGATTCT +
Preference number: 5 (lower is better)
Translates to: GWEFFENSLLEDALLNSKTPRPG*PQSSDS
Trigger: AGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGT...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS GCA 90 bp AAGACTGTGGATCTCAGACACTCGAGTCTCTTGGTTTTCCAGCTTTaGTGCTTTGATGAAACTTCTTTGAAACTGGTACATCATGAGGGG +
Preference number: 5 (lower is better)
Translates to: KTVDLRHSSLLVFQL*CFDETSLKLVHHEG
Trigger: CCCCTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS-3UTR CAA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGTTGTCATACTTCTTTTaGGCTTCCCTGGCGGCCCCA +
Preference number: 5 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWLSYFF*ASLAAP
Trigger: TGGGGCCGCCAGGGAAGCCAAAAAGAAGTATGACAA...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CCTCTTCCAACTCAGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTGCGGTTTCTTGTATTTaGTATGCTGATGGTCAACTG +
Preference number: 5 (lower is better)
Translates to: PLPTQQRCTFFSTILILLAVSCI*YADGQL
Trigger: CAGTTGACCATCAGCATACAAAATACAAGAAACCGC...AAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCTGAGTTGGAAGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGTTAACAGTTGATTCTCTCCTGGGCCGACTAGGTTaGACCACATCCAGGTTTGAG +
Preference number: 5 (lower is better)
Translates to: EIVCFSVTADNLLTVDSLLGRLG*TTSRFE
Trigger: CTCAAACCTGGATGTGGTCAAACCTAGTCGGCCCAG...GAGAGAATCAACTGTTAACAGATTGTCAGCTGTTACAGAAAAACAGACTATCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CAA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATAGGCGTACAAAGCCTTaGCCTTCCGGAATGGTGTGC +
Preference number: 5 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYRRTKP*PSGMVC
Trigger: GCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCT...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp CTTCCTAGACAGCCAGAACATTCCTTTGAAAGACAGGTAGCTAAGCAGACGCTTAAACATCTTTCTCTCTaGCACTTCCTGCACCTTAAA +
Preference number: 5 (lower is better)
Translates to: LPRQPEHSFERQVAKQTLKHLSL*HFLHLK
Trigger: TTTAAGGTGCAGGAAGTGCAAGAGAGAAAGATGTTT...AAGCGTCTGCTTAGCTACCTGTCTTTCAAAGGAATGTTCTGGCTGTCTAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAGCGGTTTCTTGTATTTaGTATGCTGATGGTCAACTG +
Preference number: 5 (lower is better)
Translates to: SSDALSLALFSSCFFFPEAVSCI*YADGQL
Trigger: CAGTTGACCATCAGCATACAAAATACAAGAAACCGC...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp CATTCTGATATCAACTCATTCCTCATGATCTACCCCAGTTTTCCTTATTTGTGGTGGTTGTTAGCAACATaGGCCAGGTGGTTCATGAGC +
Preference number: 5 (lower is better)
Translates to: HSDINSFLMIYPSFPYLWWLLAT*ARWFMS
Trigger: GCTCATGAACCACCTGGCCAATGTTGCTAACAACCA...CCACAAATAAGGAAAACTGGGGTAGATCATGAGGAATGAGTTGATATCAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAAGATTCTGCTTGTGGTaGTTAGCAACATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: GWEFFENSLLEDALLNSKRFCLW*LATLAR
Trigger: CCTGGCCAATGTTGCTAACAACCACAAGCAGAATCT...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS-3UTR CAA 90 bp AGCAGCGATGCACTTTCTTTAGCACTATTCTCATCCTGCTTCTTCTTCCCAGAAGTCATCAGATTCTGCTaGTGGTTGTTAGCAACATTG +
Preference number: 5 (lower is better)
Translates to: SSDALSLALFSSCFFFPEVIRFC*WLLATL
Trigger: CAATGTTGCTAACAACCACAAGCAGAATCTGATGAC...TTCTGGGAAGAAGAAGCAGGATGAGAATAGTGCTAAAGAAAGTGCATCGCTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
CDS-3UTR CAA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATACACCACGCCCAGGTTaGCCACAGTCATCAGATTCT +
Preference number: 5 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYTPRPG*PQSSDS
Trigger: AGAATCTGATGACTGTGGCAAACCTGGGCGTGGTGT...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp AGTAAAGATGAGGGTCAGGAGATAGTCTGTTTTTCTGTAACAGCTGACAATCTGGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: SKDEGQEIVCFSVTADNLDSKLE*MMLFLC
Trigger: GCAGAGGAACAGCATCATCAACTCCAGTTTGGAATC...CAGATTGTCAGCTGTTACAGAAAAACAGACTATCTCCTGACCCTCATCTTTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141058.8
CDS-3UTR CAA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAAAAGCAAGTGCAGGTTaGGATGGCAGGGAACAAAGT +
Preference number: 5 (lower is better)
Translates to: GWEFFENSLLEDALLNSKKASAG*DGREQS
Trigger: ACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTT...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp GTTTTTAACCTGACTTTTAATAAGTCACCAAGGAACGCAGCTGTGGATAACTATTACTTCGTAGAAATGTaGCCGAACCAGGTCCACTTG +
Preference number: 5 (lower is better)
Translates to: VFNLTFNKSPRNAAVDNYYFVEM*PNQVHL
Trigger: CAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTA...ATAGTTATCCACAGCTGCGTTCCTTGGTGACTTATTAAAAGTCAGGTTAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS-3UTR CAA 90 bp GGGTGGGAGTTCTTTGAAAATTCACTGCTTGAAGATGCTCTTTTGAACTCCAAAGTCATCAGATTCTGCTaGTGGTTGTTAGCAACATTG +
Preference number: 5 (lower is better)
Translates to: GWEFFENSLLEDALLNSKVIRFC*WLLATL
Trigger: CAATGTTGCTAACAACCACAAGCAGAATCTGATGAC...TTTGGAGTTCAAAAGAGCATCTTCAAGCAGTGAATTTTCAAAGAACTCCCACCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
CDS CAA 90 bp GAAGACGGTGCCCGCTGTGAAGGAGAGCTCCGAGTCGTGCTCAGCTaGGCAGGCGTACAAAGCCTTTGCCTTCCGGAATGGTGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: EDGARCEGELRVVLS*AGVQSLCLPEWCAD
Trigger: ATCAGCACACCATTCCGGAAGGCAAAGGCTTTGTACGCCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155576.8
CDS TCA 72 bp CTCCCATGGAATCATTATCGAAGACGGTGCCCGCTGTaGAGGAGAGCTCCGAGTCGTGCTCAGCTTGGCAGG +
Preference number: 6 (lower is better)
Translates to: LPWNHYRRRCPL*RRAPSRAQLGR
Trigger: CCTGCCAAGCTGAGCACGACTCGGAGCTCTCCTTCACAGCGGGCACCGTCTTCGATAATGATTCCATGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS GCA 72 bp TCCATCCAGAGCCTACGGTCCTCTTCCGACAACGCCTaGATGGTGATAACCCCTGGCCTGTCTACTGCTTCC +
Preference number: 6 (lower is better)
Translates to: SIQSLRSSSDNA*MVITPGLSTAS
Trigger: GGAAGCAGTAGACAGGCCAGGGGTTATCACCATGCAGGCGTTGTCGGAAGAGGACCGTAGGCTCTGGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS TCA 72 bp AGCAGCCTTGGAGCTGCTTCGGACCACATACCTGAGTaGGGATGGTGTAGAGGTGGTCTTCCCAGCCAACCA +
Preference number: 6 (lower is better)
Translates to: SSLGAASDHIPE*GWCRGGLPSQP
Trigger: TGGTTGGCTGGGAAGACCACCTCTACACCATCCTCACTCAGGTATGTGGTCCGAAGCAGCTCCAAGGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148850.8
CDS CAA 72 bp TCCAATTGTGCGGTCCCTTCGCTCTGGCTGTCTCTGTaGGAGTTGTACACAGGTTCCCGGCCATCCATGGCT +
Preference number: 6 (lower is better)
Translates to: SNCAVPSLWLSL*ELYTGSRPSMA
Trigger: AGCCATGGATGGCCGGGAACCTGTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS CAA 90 bp GGCTTGGAGTCACTGCTTTTCTTCCGGGACAGGTGTAGCTGGGCGTaGGTGAGGGGCACATCAGGCACCGTGTTGAATATCTTCTCATGG +
Preference number: 6 (lower is better)
Translates to: GLESLLFFRDRCSWA*VRGTSGTVLNIFSW
Trigger: CCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGACTCCAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS GCA 72 bp ACATTGGCCAGGTGGTTCATGAGCAGCTGCAACATCTaGCGATTCTTCTCCGGGAGCCGATGGACAAGACTG +
Preference number: 6 (lower is better)
Translates to: TLARWFMSSCNI*RFFSGSRWTRL
Trigger: CAGTCTTGTCCATCGGCTCCCGGAGAAGAATCGGCAGATGTTGCAGCTGCTCATGAACCACCTGGCCAATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CCA 72 bp AAGCCGATACTGTCCAATTGTGCGGTCCCTTCGCTCTaGCTGTCTCTGTTGGAGTTGTACACAGGTTCCCGG +
Preference number: 6 (lower is better)
Translates to: KPILSNCAVPSL*LSLLELYTGSR
Trigger: CCGGGAACCTGTGTACAACTCCAACAGAGACAGCCAGAGCGAAGGGACCGCACAATTGGACAGTATCGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS CAA 72 bp TCACTGCTTTTCTTCCGGGACAGGTGTAGCTGGGCGTaGGTGAGGGGCACATCAGGCACCGTGTTGAATATC +
Preference number: 6 (lower is better)
Translates to: SLLFFRDRCSWA*VRGTSGTVLNI
Trigger: GATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCTACACCTGTCCCGGAAGAAAAGCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 90 bp TTCCAGTGTGTTGGCAAGCATCTTTCCCCTCCAAGGCAAGCAGCCTaGGAGCTGCTTCGGACCACATACCTGAGTGAGGATGGTGTAGAG +
Preference number: 6 (lower is better)
Translates to: FQCVGKHLSPPRQAA*ELLRTTYLSEDGVE
Trigger: CTCTACACCATCCTCACTCAGGTATGTGGTCCGAAGCAGCTCCAAGGCTGCTTGCCTTGGAGGGGAAAGATGCTTGCCAACACACTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148850.8
CDS GCA 72 bp GGGCTGCAGGCTGCTGCTAGAGTTAAGGATGCTGTTTaGACTCGAGGAGACCGATTCCAAACTGGAGTTGAT +
Preference number: 6 (lower is better)
Translates to: GLQAAARVKDAV*TRGDRFQTGVD
Trigger: ATCAACTCCAGTTTGGAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS GCA 72 bp TCACGGACCGCTTCTTCTGGCCTGTCAAAAAGCAAGTaGAGGTTTGGATGGCAGGGAACAAAGTTGACGAGG +
Preference number: 6 (lower is better)
Translates to: SRTASSGLSKSK*RFGWQGTKLTR
Trigger: CCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS CCA 72 bp GAATGGTGTGCTGGAGTCTTCACGGACCGCTTCTTCTaGCCTGTCAAAAAGCAAGTGCAGGTTTGGATGGCA +
Preference number: 6 (lower is better)
Translates to: EWCAGVFTDRFF*PVKKQVQVWMA
Trigger: TGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCGGTCCGTGAAGACTCCAGCACACCATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS CAA 90 bp CGACTAGGTTTGACCACATCCAGGTTTGAGTCGCTGGAATTCAGATaGGGCTGCAGGCTGCTGCTAGAGTTAAGGATGCTGTTTGCACTC +
Preference number: 6 (lower is better)
Translates to: RLGLTTSRFESLEFR*GCRLLLELRMLFAL
Trigger: GAGTGCAAACAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAATTCCAGCGACTCAAACCTGGATGTGGTCAAACCTAGTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS TCA 72 bp TGGTCTCCACCGCATGGATGCATTTCCTTATTATGCTaGAGCCGATACTGTCCAATTGTGCGGTCCCTTCGC +
Preference number: 6 (lower is better)
Translates to: WSPPHGCISLLC*SRYCPIVRSLR
Trigger: GCGAAGGGACCGCACAATTGGACAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS TCA 72 bp CTGGGAGCATTCTCAGGTAGGTCTTCAGAGCACTGGTaGCGGTCTTTATCTCCCATTCGGCACAGATATCAG +
Preference number: 6 (lower is better)
Translates to: LGAFSGRSSEHW*RSLSPIRHRYQ
Trigger: CTGATATCTGTGCCGAATGGGAGATAAAGACCGTCACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS GCA 72 bp CCATTCGGCACAGATATCAGTTTCTGTCTCAGAAGCTaGTTTGGGGTCCATCAGGACGCTCAGCAACTTCTG +
Preference number: 6 (lower is better)
Translates to: PFGTDISFCLRS*FGVHQDAQQLL
Trigger: CAGAAGTTGCTGAGCGTCCTGATGGACCCCAAAGCAGCTTCTGAGACAGAAACTGATATCTGTGCCGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CCA 72 bp AGCCCCTGCTCATTGATCCCTCTGGTCTCCACCGCATaGATGCATTTCCTTATTATGCTGAAGCCGATACTG +
Preference number: 6 (lower is better)
Translates to: SPCSLIPLVSTA*MHFLIMLKPIL
Trigger: CAGTATCGGCTTCAGCATAATAAGGAAATGCATCCATGCGGTGGAGACCAGAGGGATCAATGAGCAGGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CCA 72 bp CGCTTCTTCTGGCCTGTCAAAAAGCAAGTGCAGGTTTaGATGGCAGGGAACAAAGTTGACGAGGAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: RFFWPVKKQVQV*MAGNKVDEEAE
Trigger: TTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGAAGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS CAA 72 bp AGCTGGGCGTTGGTGAGGGGCACATCAGGCACCGTGTaGAATATCTTCTCATGGTTCTCGATTAAGATCTCG +
Preference number: 6 (lower is better)
Translates to: SWALVRGTSGTV*NIFSWFSIKIS
Trigger: CGAGATCTTAATCGAGAACCATGAGAAGATATTCAACACGGTGCCTGATGTGCCCCTCACCAACGCCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 72 bp TTGACCACATCCAGGTTTGAGTCGCTGGAATTCAGATaGGGCTGCAGGCTGCTGCTAGAGTTAAGGATGCTG +
Preference number: 6 (lower is better)
Translates to: LTTSRFESLEFR*GCRLLLELRML
Trigger: CAGCATCCTTAACTCTAGCAGCAGCCTGCAGCCCAATCTGAATTCCAGCGACTCAAACCTGGATGTGGTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
ENSMUST00000235660.2
CDS TCA 72 bp AATCCTTGGCCAGCTCATAACCATGGTGATAGAAAGTaGAGAGTCCTTGCAGGAAGGCCAGCAGAGGCTCTA +
Preference number: 6 (lower is better)
Translates to: NPWPAHNHGDRK*RVLAGRPAEAL
Trigger: TAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTGGCCAAGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS CCA 72 bp TCTTCTGGCCTGTCAAAAAGCAAGTGCAGGTTTGGATaGCAGGGAACAAAGTTGACGAGGAGGCTGAACACT +
Preference number: 6 (lower is better)
Translates to: SSGLSKSKCRFG*QGTKLTRRLNT
Trigger: AGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCACTTGCTTTTTGACAGGCCAGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097593.9
CDS CAA 72 bp CTTAAAGACATACTCCAGGGATACTTCGTAGAAATGTaGCCGAACCAGGTCCACTTGGCTGTCTGCCTCCTG +
Preference number: 6 (lower is better)
Translates to: LKDILQGYFVEM*PNQVHLAVCLL
Trigger: CAGGAGGCAGACAGCCAAGTGGACCTGGTTCGGCAACATTTCTACGAAGTATCCCTGGAGTATGTCTTTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS CCA 72 bp GAAACTTCTTTGAAACTGGTACATCATGAGGGGTCCTaGGAGCATTCTCAGGTAGGTCTTCAGAGCACTGGT +
Preference number: 6 (lower is better)
Translates to: ETSLKLVHHEGS*EHSQVGLQSTG
Trigger: ACCAGTGCTCTGAAGACCTACCTGAGAATGCTCCCAGGACCCCTCATGATGTACCAGTTTCAAAGAAGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 72 bp CTGTTTGCACTCGAGGAGACCGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGCTCCTGTTTTTCTGTG +
Preference number: 6 (lower is better)
Translates to: LFALEETDSKLE*MMLFLCSCFSV
Trigger: CACAGAAAAACAGGAGCAGAGGAACAGCATCATCAACTCCAGTTTGGAATCGGTCTCCTCGAGTGCAAACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 90 bp TTAAGGATGCTGTTTGCACTCGAGGAGACCGATTCCAAACTGGAGTaGATGATGCTGTTCCTCTGCTCCTGTTTTTCTGTGGATGGCACA +
Preference number: 6 (lower is better)
Translates to: LRMLFALEETDSKLE*MMLFLCSCFSVDGT
Trigger: TGTGCCATCCACAGAAAAACAGGAGCAGAGGAACAGCATCATCAACTCCAGTTTGGAATCGGTCTCCTCGAGTGCAAACAGCATCCTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000141058.8
ENSMUST00000151757.8
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 72 bp CAGCTCATAACCATGGTGATAGAAAGTGAAGAGTCCTaGCAGGAAGGCCAGCAGAGGCTCTACAAACTCAAA +
Preference number: 6 (lower is better)
Translates to: QLITMVIESEES*QEGQQRLYKLK
Trigger: TTTGAGTTTGTAGAGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTATGAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS TCA 72 bp TTGGTGTCTTCCTTGGTCACTCTCCACCTTATTTCTTaGGACAGGGTCTCCCATGGAATCATTATCGAAGAC +
Preference number: 6 (lower is better)
Translates to: LVSSLVTLHLIS*DRVSHGIIIED
Trigger: GTCTTCGATAATGATTCCATGGGAGACCCTGTCTCAAGAAATAAGGTGGAGAGTGACCAAGGAAGACACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235660.2
CDS CCA 72 bp TGGACAAGACTGTGGATCTCAGACACTCGAGTCTCTTaGTTTTCCAGCTTTGCTGCTTTGATGAAACTTCTT +
Preference number: 6 (lower is better)
Translates to: WTRLWISDTRVS*FSSFAALMKLL
Trigger: AAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATCCACAGTCTTGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 72 bp CTCAGACCTGGTTCCTTCAAAGCGGTTTCTTGTATTTaGTATGCTGATGGTCAACTGTGTCTTAAAGTCACC +
Preference number: 6 (lower is better)
Translates to: LRPGSFKAVSCI*YADGQLCLKVT
Trigger: GGTGACTTTAAGACACAGTTGACCATCAGCATACAAAATACAAGAAACCGCTTTGAAGGAACCAGGTCTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000155576.8
CDS GCA 72 bp GATCTCAGACACTCGAGTCTCTTGGTTTTCCAGCTTTaGTGCTTTGATGAAACTTCTTTGAAACTGGTACAT +
Preference number: 6 (lower is better)
Translates to: DLRHSSLLVFQL*CFDETSLKLVH
Trigger: ATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAGCTGGAAAACCAAGAGACTCGAGTGTCTGAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000154551.8
ENSMUST00000155576.8
CDS CAA 72 bp CTCGTCTTCAAGATTCCTGAGAACAGCAGCAAATTCTaGCAAAGATCTCGCTATACACATCTCATCATCTGT +
Preference number: 6 (lower is better)
Translates to: LVFKIPENSSKF*QRSRYTHLIIC
Trigger: ACAGATGATGAGATGTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000148850.8
ENSMUST00000155576.8
CDS GCA 72 bp TCGTCTTCAAGATTCCTGAGAACAGCAGCAAATTCTTaGAAAGATCTCGCTATACACATCTCATCATCTGTT +
Preference number: 6 (lower is better)
Translates to: SSSRFLRTAANS*KDLAIHISSSV
Trigger: AACAGATGATGAGATGTGTATAGCGAGATCTTTGCAAGAATTTGCTGCTGTTCTCAGGAATCTTGAAGACGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000097593.9
ENSMUST00000137497.9
ENSMUST00000148850.8
ENSMUST00000155576.8