RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGAP25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030047

Ensembl transcript IDs: ENSMUST00000071024.7, ENSMUST00000101197.9, ENSMUST00000113637.9

Found 263 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTTCAGTGGCAAGCCAACAGCAGCAATTGGGGCGGTACTGCCACCTaGGGCAAGCCACGGGAGCAGGGAGACCATTGTGGCCAGAGAGTA +
Preference number: 1 (lower is better)
Translates to: VQWQANSSNWGGTAT*GKPREQGDHCGQRV
Trigger: TACTCTCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCGCCCCAATTGCTGCTGTTGGCTTGCCACTGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR TCA 90 bp GACAACAAAGAACTGAGGCCTTGGCCCAGCTCTGGCCTGGGGTCCTaGGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTCATAC +
Preference number: 1 (lower is better)
Translates to: DNKELRPWPSSGLGS*DVTHLKCLLWTWSY
Trigger: GTATGACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAGAGCTGGGCCAAGGCCTCAGTTCTTTGTTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR TCA 90 bp ACCTTTGCTCTGAGACTTTGCAGACAAGTTTTGTCCACTGGAGGGTaGCTCAGGATGGAACCCAAAGCCCTGGTCACACAGCCATGTACC +
Preference number: 1 (lower is better)
Translates to: TFALRLCRQVLSTGG*LRMEPKALVTQPCT
Trigger: GGTACATGGCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAAAGTCTCAGAGCAAAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CCA 90 bp TCTTCCCACAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTaGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGT +
Preference number: 1 (lower is better)
Translates to: SSHSGITQSLEHSTG*QVSWCAPVHSQLLC
Trigger: ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 90 bp GGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTaGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTC +
Preference number: 1 (lower is better)
Translates to: GPGHTLEDSSSLFPQ*NNAILGAQHRVASV
Trigger: GACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 90 bp GTTGGAAACCTTTGCTCTGAGACTTTGCAGACAAGTTTTGTCCACTaGAGGGTGACTCAGGATGGAACCCAAAGCCCTGGTCACACAGCC +
Preference number: 1 (lower is better)
Translates to: VGNLCSETLQTSFVH*RVTQDGTQSPGHTA
Trigger: GGCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAAAGTCTCAGAGCAAAGGTTTCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CCA 90 bp CGGTACTGCCACCTGGGGCAAGCCACGGGAGCAGGGAGACCATTGTaGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTTTATA +
Preference number: 1 (lower is better)
Translates to: RYCHLGQATGAGRPL*PESNQRYCWLVVFI
Trigger: TATAAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR GCA 90 bp AACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTaGTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTG +
Preference number: 1 (lower is better)
Translates to: NAILGAQHRVASVLV*SCTLSTSVYLLRIV
Trigger: CACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 90 bp AAGTTTTGTCCACTGGAGGGTGACTCAGGATGGAACCCAAAGCCCTaGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGG +
Preference number: 1 (lower is better)
Translates to: KFCPLEGDSGWNPKP*SHSHVPQERFTCFR
Trigger: CCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CCA 90 bp GGAGCAGGGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTaGTTGGTTGTTTTTATAATTAACTCAGCAAAAGGCAGGTGGCAT +
Preference number: 1 (lower is better)
Translates to: GAGRPLWPESNQRYC*LVVFIINSAKGRWH
Trigger: ATGCCACCTGCCTTTTGCTGAGTTAATTATAAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp GCGGTACTGCCACCTGGGGCAAGCCACGGGAGCAGGGAGACCATTGTGGCCAGATCTGGCCTGGGGTCCTaGGATGTCACACACCTTAAA +
Preference number: 2 (lower is better)
Translates to: AVLPPGASHGSRETIVARSGLGS*DVTHLK
Trigger: TTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAGA...TCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAGAAATGGAGTGGAGTTaGCTGTCCCTGCCACACCAC +
Preference number: 2 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSEMEWS*LSLPHH
Trigger: GTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTC...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CAA 90 bp GGGCGGTACTGCCACCTGGGGCAAGCCACGGGAGCAGGGAGACCATaGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTTT +
Preference number: 2 (lower is better)
Translates to: GRYCHLGQATGAGRP*WPESNQRYCWLVVF
Trigger: AAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTGAAATGGAGTGGAGTTaGCTGTCCCTGCCACACCAC +
Preference number: 2 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGEMEWS*LSLPHH
Trigger: GTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTC...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp AGCCCTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGGAAATGGAGTGGAGTTaGCTGTCCCTGCCACACCAC +
Preference number: 2 (lower is better)
Translates to: SPGHTAMYHKKDSPASGKEMEWS*LSLPHH
Trigger: GTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTC...CTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CAA 90 bp TGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTaGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTA +
Preference number: 2 (lower is better)
Translates to: WKIPVHSSHSGITQS*EHSTGWQVSWCAPV
Trigger: TACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp TTTTGTCCACTGGAGGGTGACTCAGGATGGAACCCAAAGCCCTGGTCACACAGCGCCAGCACTGGAGAGTaGAGAAATATTTTCTGGCCA +
Preference number: 2 (lower is better)
Translates to: FCPLEGDSGWNPKPWSHSASTGE*RNIFWP
Trigger: TGGCCAGAAAATATTTCTTCACTCTCCAGTGCTGGC...GCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR CCA 90 bp TCCCACAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCAGGAGCATGAAGAAATaGAGTGGAGTTGACTGTCCC +
Preference number: 2 (lower is better)
Translates to: SHSGITQSLEHSTGWQVSRSMKK*SGVDCP
Trigger: GGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT...GGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCGAGCACAGCACAGGGTaGCAAGTGTCCTGGTGTGCT +
Preference number: 2 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSEHSTG*QVSWCA
Trigger: AGCACACCAGGACACTTGCCACCCTGTGCTGTGCTC...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CAA 90 bp GCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTaGCTGAGGATTGTGGCACATCCCTCAGATACCCTGTCCATCCTA +
Preference number: 2 (lower is better)
Translates to: ASVLVCSCTLSTSVY*LRIVAHPSDTLSIL
Trigger: TAGGATGGACAGGGTATCTGAGGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CCA 90 bp GCAGGGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTGGAACCCAAAGCCCTaGTCACACAGCCATGTACCA +
Preference number: 2 (lower is better)
Translates to: AGRPLWPESNQRYCWLVVWNPKP*SHSHVP
Trigger: TGGTACATGGCTGTGTGACCAGGGCTTTGGGTTCCA...AACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTAGCTCACTAGGAGCATaGAGAAATGGAGTGGAGTTG +
Preference number: 2 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFASSLGA*RNGVEL
Trigger: CAACTCCACTCCATTTCTTCATGCTCCTAGTGAGCT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CCA 90 bp AGCGACCAGAACCATCTGACTAGGCAAGACAGCCACAGAGACAACAAAGAACTGAGGAGCATGAAGAAATaGAGTGGAGTTGACTGTCCC +
Preference number: 2 (lower is better)
Translates to: SDQNHLTRQDSHRDNKELRSMKK*SGVDCP
Trigger: GGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT...CAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR TCA 90 bp TTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAAGCTCACTAGGAGCATaGAGAAATGGAGTGGAGTTG +
Preference number: 2 (lower is better)
Translates to: LDLVIHWKIPVHSSHSGISSLGA*RNGVEL
Trigger: CAACTCCACTCCATTTCTTCATGCTCCTAGTGAGCT...TATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAGGAGCATGAAGAAATaGAGTGGAGTTGACTGTCCC +
Preference number: 2 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHRSMKK*SGVDCP
Trigger: GGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 72 bp CAAGCCAACAGCAGCAATTGGGGCGGTACTGCCACCTaGGGCAAGCCACGGGAGCAGGGAGACCATTGTGGC +
Preference number: 3 (lower is better)
Translates to: QANSSNWGGTAT*GKPREQGDHCG
Trigger: GCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCGCCCCAATTGCTGCTGTTGGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CCA 72 bp CACCTGGGGCAAGCCACGGGAGCAGGGAGACCATTGTaGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTT +
Preference number: 3 (lower is better)
Translates to: HLGQATGAGRPL*PESNQRYCWLV
Trigger: AACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CCA 72 bp CCACTGGAGGGTGACTCAGGATGGAACCCAAAGCCCTaGTCACACAGCCATGTACCACAAGAAAGATTCACC +
Preference number: 3 (lower is better)
Translates to: PLEGDSGWNPKP*SHSHVPQERFT
Trigger: GGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR TCA 72 bp CTAGGAGGTAACCCTGCTTCCAGCTCACTAGGAGCATaGAGAAATGGAGTGGAGTTGACTGTCCCTGCCACA +
Preference number: 3 (lower is better)
Translates to: LGGNPASSSLGA*RNGVELTVPAT
Trigger: TGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCTAGTGAGCTGGAAGCAGGGTTACCTCCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR TCA 72 bp CTGAGACTTTGCAGACAAGTTTTGTCCACTGGAGGGTaGCTCAGGATGGAACCCAAAGCCCTGGTCACACAG +
Preference number: 3 (lower is better)
Translates to: LRLCRQVLSTGG*LRMEPKALVTQ
Trigger: CTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAAAGTCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR-3UTR CAA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGGGAATAACGCAATCCTaGGAGCACAGCACAGGGTGG +
Preference number: 3 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLGITQS*EHSTGW
Trigger: CCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCC...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CAA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTAGAAATGGAGTGGAGTaGACTGTCCCTGCCACACCA +
Preference number: 3 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFARNGVE*TVPATP
Trigger: TGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 72 bp CAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTaGTGTGCTCCTGTACACTCTCAACTTCTGTGTATT +
Preference number: 3 (lower is better)
Translates to: QSLEHSTGWQVS*CAPVHSQLLCI
Trigger: AATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 72 bp CTTTGCTCTGAGACTTTGCAGACAAGTTTTGTCCACTaGAGGGTGACTCAGGATGGAACCCAAAGCCCTGGT +
Preference number: 3 (lower is better)
Translates to: LCSETLQTSFVH*RVTQDGTQSPG
Trigger: ACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAAAGTCTCAGAGCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR TCA 72 bp TCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTaGAGAAATATTTTCTGGCCATGTTTTAGAGCGACC +
Preference number: 3 (lower is better)
Translates to: SPSSPQLASTGE*RNIFWPCFRAT
Trigger: GGTCGCTCTAAAACATGGCCAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CCA 72 bp ATTCCAACAGTTCAGCCTCTCCAAGCAGCCCTCAGTTaGCCAGCACTGGAGAGTGAAGAAATATTTTCTGGC +
Preference number: 3 (lower is better)
Translates to: IPTVQPLQAALS*PALESEEIFSG
Trigger: GCCAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAGGCTGAACTGTTGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CAA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAGAAATGGAGTGGAGTaGACTGTCCCTGCCACACCA +
Preference number: 3 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNRNGVE*TVPATP
Trigger: TGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCT...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR TCA 72 bp TGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTaGGGATTGTGGCACATCCCTCAGATACCCTGTCCA +
Preference number: 3 (lower is better)
Translates to: CAPVHSQLLCIC*GLWHIPQIPCP
Trigger: TGGACAGGGTATCTGAGGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CAA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTCGGGTGTTTGTTTGTTaGCATATATGTATGGGCAGC +
Preference number: 3 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGRVFVC*HICMGS
Trigger: GCTGCCCATACATATATGCAAACAAACAAACACCCG...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR TCA 72 bp ATTTTCTGGCCATGTTTTAGAGCGACCAGAACCATCTaGCTAGGCAAGACAGCCACAGAGACAACAAAGAAC +
Preference number: 3 (lower is better)
Translates to: IFWPCFRATRTI*LGKTATETTKN
Trigger: GTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCTCTAAAACATGGCCAGAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR-3UTR CAA 90 bp CAGCGATATTGTTGGTTGGTTGTTTTTATAATTAACTCAGCAAAAGGCAGGTGGAGAAATGGAGTGGAGTaGACTGTCCCTGCCACACCA +
Preference number: 3 (lower is better)
Translates to: QRYCWLVVFIINSAKGRWRNGVE*TVPATP
Trigger: TGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCT...CCACCTGCCTTTTGCTGAGTTAATTATAAAAACAACCAACCAACAATATCGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR GCA 72 bp TGGTCACACAGCCATGTACCACAAGAAAGATTCACCTaGTTCAGGCAAGAGGTGCCTTTTACTAATTATTTT +
Preference number: 3 (lower is better)
Translates to: WSHSHVPQERFT*FRQEVPFTNYF
Trigger: AAAATAATTAGTAAAAGGCACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GCGGTACTGCCACCTGGGGCAAGCCACGGGAGCAGGGAGACCATTGTGGCCAGACACCATGTTCCAGGATaGACTCAGCGCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: AVLPPGASHGSRETIVARHHVPG*TQRTSP
Trigger: TGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTG...TCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGTGGCAGTACCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTGGCAGGGGGAGAGAGTaGACCTGCTGGGTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGGRGRE*TCWVPL
Trigger: CAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCC...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGGCAGGGGGAGAGAGTaGACCTGCTGGGTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCGRGRE*TCWVPL
Trigger: CAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCC...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAAGGAACCACAGGCTCTaGCAGGTCTCGGAGGTAGAG +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSRNHRL*QVSEVE
Trigger: CTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCT...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TCCCACAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCCCTGATGCTGGTCACTaGGCAGTGGTCCAGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SHSGITQSLEHSTGWQVSPDAGH*AVVQWD
Trigger: GTCCCACTGGACCACTGCCCAGTGACCAGCATCAGG...GGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCCCTGGGAGCTGGCCATaGGGACGTAGGAGTCTTGTC +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTPGSWP*GRRSLV
Trigger: GACAAGACTCCTACGTCCTCATGGCCAGCTCCCAGG...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCACCCTTGGGACTGTGGTaGGGTGGGGACATTATCGTA +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSPLGLW*GGDIIV
Trigger: TACGATAATGTCCCCACCTCACCACAGTCCCAAGGG...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TCCCACAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCCGGGCAGGCGGAAGATaGCCTCTTCACTCACACCAT +
Preference number: 4 (lower is better)
Translates to: SHSGITQSLEHSTGWQVSRAGGR*PLHSHH
Trigger: ATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCG...GGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTGGGAGAGAGTGCACCTaGTGGGTTCCCTTGGGACTG +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGGRECT*WVPLGL
Trigger: CAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCC...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTCACCCCGATCACAGTaGCCAGGTTGTCCACGCTCA +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVSPRSQ*PGCPRS
Trigger: TGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCATGTCCTAGAAAGGGGTaGGTCTTCCGTGGCATCCCA +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSCPRKG*VFRGIP
Trigger: TGGGATGCCACGGAAGACCCACCCCTTTCTAGGACA...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTTGGGAGTGGTGGGTaGGTGAAAGGCCGCCATCTG +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCVGSGG*VKGRHL
Trigger: CAGATGGCGGCCTTTCACCCACCCACCACTCCCAAC...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGGGGGGTTGGGAGTGGTaGGTGGGTGAAAGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLGGWEW*VGERPP
Trigger: TGGCGGCCTTTCACCCACCCACCACTCCCAACCCCC...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTGCCTTTCCAGGGGGTTaGGAGTGGTGGGTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGAFPGG*EWWVGE
Trigger: TTCACCCACCCACCACTCCCAACCCCCTGGAAAGGC...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCACACCATGTTCCAGGATaGACTCAGCGCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSHHVPG*TQRTSP
Trigger: TGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTG...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTCCTCATCTGCGTTCATaGGCTGCCCACAGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCPHLRS*AAHRAG
Trigger: TCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGG...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCCCTCATCTGCGTTCATaGGCTGCCCACAGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTPHLRS*AAHRAG
Trigger: TCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGG...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCATCCTGCCTTAGCCTCTaGAGATGGAGACCAGAACTC +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSSCLSL*RWRPEL
Trigger: GAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGA...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACAGGAGTGGTGGGTGGGTaGAAGGCCGCCATCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTGVVGG*KAAICS
Trigger: GGAGCAGATGGCGGCCTTTCACCCACCCACCACTCC...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTCTGCGTTCATGAGCTaGCCACAGAGCAGGAACCCT +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVSAFMS*PQSRNP
Trigger: AGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGGCAGGGGGAGAGAGTaGACCTGCTGGGTTCCCTTG +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAGRGRE*TCWVPL
Trigger: CAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCC...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TCCCACAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCACTTCTCCACCAAGATaGGCACCAGGTGAGGGCCAA +
Preference number: 4 (lower is better)
Translates to: SHSGITQSLEHSTGWQVSTSPPR*APGEGQ
Trigger: TTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGT...GGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTTCACCCCGATCACAGTaGCCAGGTTGTCCACGCTCA +
Preference number: 4 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCSPRSQ*PGCPRS
Trigger: TGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGA...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTTCACCCCGATCACAGTaGCCAGGTTGTCCACGCTCA +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCSPRSQ*PGCPRS
Trigger: TGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGA...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGAGGTGGCGCAAGTCTTaGGACATAGTTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVRWRKS*DIVRLC
Trigger: GCACAGGCGAACTATGTCCCAAGACTTGCGCCACCT...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCTTCACCAACTCCTGCTaGGCCTTTGCCTCATCTGCG +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTFTNSC*AFASSA
Trigger: CGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAA...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTCCACGCTCATCTTGTTaGCGGCACAGTTCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCPRSSC*RHSSAG
Trigger: TCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGG...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTTTTCCGCTGTCTTCCTaGTGCTGGTCACTGGGCAGT +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGFPLSS*CWSLGS
Trigger: ACTGCCCAGTGACCAGCATCAGGAAGACAGCGGAAA...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGCGGTTGGGAAGCGTTTaGGTCCTTTTACGGGATTGC +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVRLGSV*VLLRDC
Trigger: GCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCG...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCCCCTTGGGACTGTGGTaGGGTGGGGACATTATCGTA +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTPLGLW*GGDIIV
Trigger: TACGATAATGTCCCCACCTCACCACAGTCCCAAGGG...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTTTGTCCACTGGAGGGTGACTCAGGATGGAACCCAAAGCCCTGGTCACACAGCTTGGCATCGTTTTTCTaGGCAGGGGGTGAGATCGGT +
Preference number: 4 (lower is better)
Translates to: FCPLEGDSGWNPKPWSHSLASFF*AGGEIG
Trigger: ACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAA...GCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGCCTGATGCTGGTCACTaGGCAGTGGTCCAGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLPDAGH*AVVQWD
Trigger: GTCCCACTGGACCACTGCCCAGTGACCAGCATCAGG...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTCCTGATGCTGGTCACTaGGCAGTGGTCCAGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGPDAGH*AVVQWD
Trigger: GTCCCACTGGACCACTGCCCAGTGACCAGCATCAGG...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCATTTCCAGTTTACTGCTaGTGGTGCCTTGGAATGCGG +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSFPVYC*WCLGMR
Trigger: CCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAA...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTAGGTGGCGCAAGTCTTaGGACATAGTTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGRWRKS*DIVRLC
Trigger: GCACAGGCGAACTATGTCCCAAGACTTGCGCCACCT...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp AGCGACCAGAACCATCTGACTAGGCAAGACAGCCACAGAGACAACAAAGAACTGGTTGGGAGTGGTGGGTaGGTGAAAGGCCGCCATCTG +
Preference number: 4 (lower is better)
Translates to: SDQNHLTRQDSHRDNKELVGSGG*VKGRHL
Trigger: CAGATGGCGGCCTTTCACCCACCCACCACTCCCAAC...CAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGGGGTTGGGAGTGGTaGGTGGGTGAAAGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHGGWEW*VGERPP
Trigger: TGGCGGCCTTTCACCCACCCACCACTCCCAACCCCC...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGGCCTTTCCAGGGGGTTaGGAGTGGTGGGTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLAFPGG*EWWVGE
Trigger: TTCACCCACCCACCACTCCCAACCCCCTGGAAAGGC...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CAA 72 bp CCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTaGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: PVHSSHSGITQS*EHSTGWQVSWC
Trigger: ACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCCCTGGGAGCTGGCCATaGGGACGTAGGAGTCTTGTC +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPPGSWP*GRRSLV
Trigger: GACAAGACTCCTACGTCCTCATGGCCAGCTCCCAGG...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCAGGAACCCTTCATACTaGCTCCAAGGAACCACAGGC +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTRNPSY*LQGTTG
Trigger: GCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCT...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCCGGTTGGGAAGCGTTTaGGTCCTTTTACGGGATTGC +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTRLGSV*VLLRDC
Trigger: GCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCG...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGAGGAGTCTTGTCCAATaGGGTTCTGGTCACTTGAGG +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVRSLVQ*GSGHLR
Trigger: CCTCAAGTGACCAGAACCGCATTGGACAAGACTCCT...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCAGAGATGCCACCGTGTaGACATCTGTGTCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTRDATV*TSVSLS
Trigger: TGACAGGGACACAGATGTGCACACGGTGGCATCTCT...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTTGCCTGGCAGATACATaGAGCCCTGTGGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCCLADT*SPVALS
Trigger: ACTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCA...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTTTGGCATCGTTTTTCTaGGCAGGGGGTGAGATCGGT +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCLASFF*AGGEIG
Trigger: ACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAA...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCGCACTGGAGCCTTCTTaGCATCGTTTTTCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTALEPS*HRFSGQ
Trigger: CTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGC...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCTGGGCAGTGGTCCAGTaGGACTGGTGGCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPWAVVQ*DWWHQD
Trigger: GTCCTGATGCCACCAGTCCCACTGGACCACTGCCCA...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGGCAGTGGTCCAGTaGGACTGGTGGCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTWAVVQ*DWWHQD
Trigger: GTCCTGATGCCACCAGTCCCACTGGACCACTGCCCA...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAGATCCGTCTTTGTCTTaGGCTTCTCCATCGACTTCA +
Preference number: 4 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSDPSLS*ASPSTS
Trigger: TGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATC...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CAA 72 bp GGGTGTCAGATCTCCTGGAACTGGAGCTACAGAGGTTaGTTAGCCATCATCGTGTGGATGCTGAGTCCTCTG +
Preference number: 4 (lower is better)
Translates to: GCQISWNWSYRG*LAIIVWMLSPL
Trigger: CAGAGGACTCAGCATCCACACGATGATGGCTAACAAACCTCTGTAGCTCCAGTTCCAGGAGATCTGACACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGCCACGCTCATCTTGTTaGCGGCACAGTTCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLPRSSC*RHSSAG
Trigger: TCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGG...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGGACTTCGTGGTCTCTaGTCATCATGGTCATCACTC +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCGLRGL*SSWSSL
Trigger: GAGTGATGACCATGATGATCAGAGACCACGAAGTCC...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTTTTCCGCTGTCTTCCTaGTGCTGGTCACTGGGCAGT +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAFPLSS*CWSLGS
Trigger: ACTGCCCAGTGACCAGCATCAGGAAGACAGCGGAAA...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTAGGAGTCTTGTCCAATaGGGTTCTGGTCACTTGAGG +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGRSLVQ*GSGHLR
Trigger: CCTCAAGTGACCAGAACCGCATTGGACAAGACTCCT...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTTCTGCGTTCATGAGCTaGCCACAGAGCAGGAACCCT +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFASAFMS*PQSRNP
Trigger: AGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGA...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp ACTAGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGAGCCTTTGCCTCATCTaGGTTCATGAGCTGCCCACA +
Preference number: 4 (lower is better)
Translates to: TRSMKKWSGVDCPCHTTQSLCLI*VHELPT
Trigger: TGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCT...CTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGACATAGTTCGCCTGTaGCCTTCTCCTGCCTTAGCC +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFADIVRL*PSPALA
Trigger: GGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTC...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTGACATAGTTCGCCTGTaGCCTTCTCCTGCCTTAGCC +
Preference number: 4 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGDIVRL*PSPALA
Trigger: GGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTC...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGGAGAGAGTGCACCTaGTGGGTTCCCTTGGGACTG +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHGRECT*WVPLGL
Trigger: CAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCC...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTACTTCTCCACCAAGATaGGCACCAGGTGAGGGCCAA +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFATSPPR*APGEGQ
Trigger: TTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATATGGGCAGTGGTCCAGTaGGACTGGTGGCATCAGGAC +
Preference number: 4 (lower is better)
Translates to: LDLVIHWKIPVHSSHSGIWAVVQ*DWWHQD
Trigger: GTCCTGATGCCACCAGTCCCACTGGACCACTGCCCA...TATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGGTCATTGGAAAGGTaGCGCAAGTCTTGGGACATA +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVWSLER*RKSWDI
Trigger: TATGTCCCAAGACTTGCGCCACCTTTCCAATGACCA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTAAGTCCGCTGGTCATTaGAAAGGTGGCGCAAGTCTT +
Preference number: 4 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCKSAGH*KGGASL
Trigger: AAGACTTGCGCCACCTTTCCAATGACCAGCGGACTT...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGGATCCGTCTTTGTCTTaGGCTTCTCCATCGACTTCA +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVDPSLS*ASPSTS
Trigger: TGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATC...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTTTTGACTGTACTGCCTaGCAGATACATGCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCFDCTA*QIHAAL
Trigger: CAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAA...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTTTTGACTGTACTGCCTaGCAGATACATGCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGFDCTA*QIHAAL
Trigger: CAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAA...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTTGTGGCAATTTCTTTaGCTGTACTGCCTGGCAGAT +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVLWQFL*LYCLAD
Trigger: ATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGCGACCAGAACCATCTGACTAGGCAAGACAGCCACAGAGACAACAAAGAACTGAGGAACCCTTCATACTaGCTCCAAGGAACCACAGGC +
Preference number: 4 (lower is better)
Translates to: SDQNHLTRQDSHRDNKELRNPSY*LQGTTG
Trigger: GCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCT...CAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTAGGAACCCTTCATACTaGCTCCAAGGAACCACAGGC +
Preference number: 4 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGRNPSY*LQGTTG
Trigger: GCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCT...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATCCTCATCTGCGTTCATaGGCTGCCCACAGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNPHLRS*AAHRAG
Trigger: TCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGG...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCTTCACCAACTCCTGCTaGGCCTTTGCCTCATCTGCG +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPFTNSC*AFASSA
Trigger: CGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAA...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATTTCCGCTGTCTTCCTaGTGCTGGTCACTGGGCAGT +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTFPLSS*CWSLGS
Trigger: ACTGCCCAGTGACCAGCATCAGGAAGACAGCGGAAA...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTTCCTGCCTTAGCCTCTaGAGATGGAGACCAGAACTC +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFASCLSL*RWRPEL
Trigger: GAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGA...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATCGGGCAGGCGGAAGATaGCCTCTTCACTCACACCAT +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNRAGGR*PLHSHH
Trigger: ATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCG...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTAAAGCATCTCTCAGCTaGTTCACAAGGTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCKASLS*FTRLSC
Trigger: GCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTT...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAGGAACCACAGGCTCTaGCAGGTCTCGGAGGTAGAG +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNRNHRL*QVSEVE
Trigger: CTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCT...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTCTCATAATCACAGCTaGGTCTTCAACCTTCGACCT +
Preference number: 4 (lower is better)
Translates to: QWNNAILGAQHRVASVLVSHNHS*VFNLRP
Trigger: AGGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGCACTGGAGCCTTCTTaGCATCGTTTTTCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAALEPS*HRFSGQ
Trigger: CTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGC...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGTCCTAGAAAGGGGTaGGTCTTCCGTGGCATCCCA +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTCPRKG*VFRGIP
Trigger: TGGGATGCCACGGAAGACCCACCCCTTTCTAGGACA...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp ACTAGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGTTTCCAGTTTACTGCTaGTGGTGCCTTGGAATGCGG +
Preference number: 4 (lower is better)
Translates to: TRSMKKWSGVDCPCHTTQFPVYC*WCLGMR
Trigger: CCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAA...CTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCTTGTGGCAATTTCTTTaGCTGTACTGCCTGGCAGAT +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTLWQFL*LYCLAD
Trigger: ATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAA...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAAGATGGGCACCAGGTaGGGGCCAAACTTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHKMGTR*GPNFCS
Trigger: TGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCAAGATGGGCACCAGGTaGGGGCCAAACTTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSKMGTR*GPNFCS
Trigger: TGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTT...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTCACCAACTCCTGCTaGGCCTTTGCCTCATCTGCG +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSFTNSC*AFASSA
Trigger: CGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAA...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCCCACGCTCATCTTGTTaGCGGCACAGTTCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSPRSSC*RHSSAG
Trigger: TCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGG...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCATCACTCTTTGGATCTaGGGAGTCCCTCTCATAATC +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTITLWI*GVPLII
Trigger: GATTATGAGAGGGACTCCTCAGATCCAAAGAGTGAT...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCCGACCGAGCTATTTTTaGAGCCTCCGCTTTCAAATT +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTRPSYF*SLRFQI
Trigger: AATTTGAAAGCGGAGGCTTCAAAAATAGCTCGGTCG...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCAGAGATGCCACCGTGTaGACATCTGTGTCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPRDATV*TSVSLS
Trigger: TGACAGGGACACAGATGTGCACACGGTGGCATCTCT...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GCAGGGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTAGAGATGCCACCGTGTaGACATCTGTGTCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: AGRPLWPESNQRYCWLVVRDATV*TSVSLS
Trigger: TGACAGGGACACAGATGTGCACACGGTGGCATCTCT...AACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACAAGCCTTTGCCTCATCTaGGTTCATGAGCTGCCCACA +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTSLCLI*VHELPT
Trigger: TGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCT...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATGACATAGTTCGCCTGTaGCCTTCTCCTGCCTTAGCC +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNDIVRL*PSPALA
Trigger: GGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTC...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTTTAGGGAGAGAGTGCACCTaGTGGGTTCCCTTGGGACTG +
Preference number: 4 (lower is better)
Translates to: GDHCGQRVISDIVGWLFLGRECT*WVPLGL
Trigger: CAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCC...TAAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCTGCCTGGCAGATACATaGAGCCCTGTGGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPCLADT*SPVALS
Trigger: ACTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCA...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATACTTCTCCACCAAGATaGGCACCAGGTGAGGGCCAA +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNTSPPR*APGEGQ
Trigger: TTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGT...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAGGTGGCGCAAGTCTTaGGACATAGTTCGCCTGTGC +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHRWRKS*DIVRLC
Trigger: GCACAGGCGAACTATGTCCCAAGACTTGCGCCACCT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
3UTR CAA 72 bp CTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTaGCTGAGGATTGTGGCACATCCCTCAGATACCCTG +
Preference number: 4 (lower is better)
Translates to: LVCSCTLSTSVY*LRIVAHPSDTL
Trigger: CAGGGTATCTGAGGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTAAGATGGGCACCAGGTaGGGGCCAAACTTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILKMGTR*GPNFCS
Trigger: TGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTT...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATCGGTTGGGAAGCGTTTaGGTCCTTTTACGGGATTGC +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNRLGSV*VLLRDC
Trigger: GCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCG...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTCCTGCCTTAGCCTCTaGAGATGGAGACCAGAACTC +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSSCLSL*RWRPEL
Trigger: GAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGA...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTCCTCCGCTTTCAAATTaGAATCCCAGTTCCTTGGCA +
Preference number: 4 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGPPLSN*NPSSLA
Trigger: TGCCAAGGAACTGGGATTTCAATTTGAAAGCGGAGG...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGAAAGCATCTCTCAGCTaGTTCACAAGGTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLKASLS*FTRLSC
Trigger: GCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTT...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCTTTCATGCAGAAATCTaGAGATGTAGCTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTFHAEI*RCSSGG
Trigger: ACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAA...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGTGGTCATTGGAAAGGTaGCGCAAGTCTTGGGACATA +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLWSLER*RKSWDI
Trigger: TATGTCCCAAGACTTGCGCCACCTTTCCAATGACCA...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTCTCCAAGCAGCCCTCAGTTGGCCAGCACTGGAGAGTGAAGAAATATTTTCTGTTGTGGCAATTTCTTTaGCTGTACTGCCTGGCAGAT +
Preference number: 4 (lower is better)
Translates to: LSKQPSVGQHWRVKKYFLLWQFL*LYCLAD
Trigger: ATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAA...CAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTCACCATGTTCCAGGATaGACTCAGCGCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILHHVPG*TQRTSP
Trigger: TGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTG...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp CTGGTCACACAGCCATGTACCACAAGAAAGATTCACCTGCTTCAGGCAAGAGGTATCACTCTTTGGATCTaGGGAGTCCCTCTCATAATC +
Preference number: 4 (lower is better)
Translates to: LVTQPCTTRKIHLLQARGITLWI*GVPLII
Trigger: GATTATGAGAGGGACTCCTCAGATCCAAAGAGTGAT...ACCTCTTGCCTGAAGCAGGTGAATCTTTCTTGTGGTACATGGCTGTGTGACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAGGACTTCGTGGTCTCTaGTCATCATGGTCATCACTC +
Preference number: 4 (lower is better)
Translates to: LDLVIHWKIPVHSSHSGIGLRGL*SSWSSL
Trigger: GAGTGATGACCATGATGATCAGAGACCACGAAGTCC...TATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATGGACTTCGTGGTCTCTaGTCATCATGGTCATCACTC +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNGLRGL*SSWSSL
Trigger: GAGTGATGACCATGATGATCAGAGACCACGAAGTCC...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAGGAGTCTTGTCCAATaGGGTTCTGGTCACTTGAGG +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHRSLVQ*GSGHLR
Trigger: CCTCAAGTGACCAGAACCGCATTGGACAAGACTCCT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTAGCCTTTGCCTCATCTaGGTTCATGAGCTGCCCACA +
Preference number: 4 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILSLCLI*VHELPT
Trigger: TGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCT...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCACAAAGTACCGCTGCTaGCAGTTTTTCACGATGGAC +
Preference number: 4 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPTKYRC*QFFTMD
Trigger: GTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGT...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTTCTCATAATCACAGCTaGGTCTTCAACCTTCGACCT +
Preference number: 4 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFASHNHS*VFNLRP
Trigger: AGGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGA...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATGGGAAGAGGACTTCGTaGTCTCTGATCATCATGGTC +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNGKRTS*SLIIMV
Trigger: GACCATGATGATCAGAGACCACGAAGTCCTCTTCCC...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGGAAGAGGACTTCGTaGTCTCTGATCATCATGGTC +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHGKRTS*SLIIMV
Trigger: GACCATGATGATCAGAGACCACGAAGTCCTCTTCCC...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTGCACTGGAGCCTTCTTaGCATCGTTTTTCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILALEPS*HRFSGQ
Trigger: CTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGC...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACAGGAAACACTTCCGGTTaGGAAGCGTTTGAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTGNTSG*EAFESF
Trigger: AAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCC...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAAGTCCGCTGGTCATTaGAAAGGTGGCGCAAGTCTT +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHKSAGH*KGGASL
Trigger: AAGACTTGCGCCACCTTTCCAATGACCAGCGGACTT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAAAGCATCTCTCAGCTaGTTCACAAGGTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHKASLS*FTRLSC
Trigger: GCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATACAAAGTACCGCTGCTaGCAGTTTTTCACGATGGAC +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNTKYRC*QFFTMD
Trigger: GTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGT...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATGGAAACACTTCCGGTTaGGAAGCGTTTGAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNGNTSG*EAFESF
Trigger: AAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCC...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGAAACACTTCCGGTTaGGAAGCGTTTGAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHGNTSG*EAFESF
Trigger: AAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCC...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTGGTCATTGGAAAGGTaGCGCAAGTCTTGGGACATA +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSWSLER*RKSWDI
Trigger: TATGTCCCAAGACTTGCGCCACCTTTCCAATGACCA...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATATCACTCTTTGGATCTaGGGAGTCCCTCTCATAATC +
Preference number: 4 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHITLWI*GVPLII
Trigger: GATTATGAGAGGGACTCCTCAGATCCAAAGAGTGAT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GTTTGCATATATGTATGGGCAGCATATGTATATATGGTGTCCTCAGAGGGTGTCTTTCCAGTTTACTGCTaGTGGTGCCTTGGAATGCGG +
Preference number: 4 (lower is better)
Translates to: VCIYVWAAYVYMVSSEGVFPVYC*WCLGMR
Trigger: CCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAA...GACACCCTCTGAGGACACCATATATACATATGCTGCCCATACATATATGCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTTTAAAGTCCGCTGGTCATTaGAAAGGTGGCGCAAGTCTT +
Preference number: 4 (lower is better)
Translates to: GDHCGQRVISDIVGWLFLKSAGH*KGGASL
Trigger: AAGACTTGCGCCACCTTTCCAATGACCAGCGGACTT...TAAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR TCA 90 bp GACTATTCACTATACAAATCCACACCCCTAAAGTCATTTCATAGTTGGAAACCTCCCTTGGGACTGTGGTaGGGTGGGGACATTATCGTA +
Preference number: 4 (lower is better)
Translates to: DYSLYKSTPLKSFHSWKPPLGLW*GGDIIV
Trigger: TACGATAATGTCCCCACCTCACCACAGTCCCAAGGG...AGGTTTCCAACTATGAAATGACTTTAGGGGTGTGGATTTGTATAGTGAATAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTTCATGCAGAAATCTaGAGATGTAGCTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSFHAEI*RCSSGG
Trigger: ACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAA...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CCA 90 bp GGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTTTAGATCCGTCTTTGTCTTaGGCTTCTCCATCGACTTCA +
Preference number: 4 (lower is better)
Translates to: GDHCGQRVISDIVGWLFLDPSLS*ASPSTS
Trigger: TGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATC...TAAAAACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
3UTR CAA 72 bp AGTCATTTCATAGTTGGAAACCTTTGCTCTGAGACTTaGCAGACAAGTTTTGTCCACTGGAGGGTGACTCAG +
Preference number: 4 (lower is better)
Translates to: SHFIVGNLCSET*QTSFVHWRVTQ
Trigger: CTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAAAGTCTCAGAGCAAAGGTTTCCAACTATGAAATGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR GCA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTTTTCATGCAGAAATCTaGAGATGTAGCTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILFHAEI*RCSSGG
Trigger: ACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAA...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 90 bp CTGTCAAAGGAGGGCCGCTCCCCCGCATCGAAAGCATCTCTCAGCTaGTTCACAAGGTTGTCCTGCCCGGGCAGGCGGAAGATGCCCTCT +
Preference number: 5 (lower is better)
Translates to: LSKEGRSPASKASLS*FTRLSCPGRRKMPS
Trigger: AGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp CGGGCAGGCGGAAGATGCCCTCTTCACTCACACCATGTTCCAGGATaGACTCAGCGCACTTCTCCACCAAGATGGGCACCAGGTGAGGGC +
Preference number: 5 (lower is better)
Translates to: RAGGRCPLHSHHVPG*TQRTSPPRWAPGEG
Trigger: GCCCTCACCTGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp GGCAGGGGGAGAGAGTGCACCTGCTGGGTTCCCTTGGGACTGTGGTaGGGTGGGGACATTATCGTAGGTAGAAGTCCGCTGGTCATTGGA +
Preference number: 5 (lower is better)
Translates to: GRGRECTCWVPLGLW*GGDIIVGRSPLVIG
Trigger: TCCAATGACCAGCGGACTTCTACCTACGATAATGTCCCCACCTCACCACAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 90 bp TCCCCCGCATCGAAAGCATCTCTCAGCTGCTTCACAAGGTTGTCCTaGCCGGGCAGGCGGAAGATGCCCTCTTCACTCACACCATGTTCC +
Preference number: 5 (lower is better)
Translates to: SPASKASLSCFTRLS*PGRRKMPSSLTPCS
Trigger: GGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 90 bp AGGACTACTTGCTGTGTTACTGAAGCTGTCTGTCCTAGAAAGGGGTaGGTCTTCCGTGGCATCCCACCCCACAGAGCTTCGCGGCACTGG +
Preference number: 5 (lower is better)
Translates to: RTTCCVTEAVCPRKG*VFRGIPPHRASRHW
Trigger: CCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTTCAGTAACACAGCAAGTAGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTAGCTGCTTCACAAGGTaGTCCTGCCCGGGCAGGCGG +
Preference number: 5 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFASCFTR*SCPGRR
Trigger: CCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAGGTGCATCCTTAGACTaGGGGAAGAGGACTTCGTGG +
Preference number: 5 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSGASLD*GKRTSW
Trigger: CCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACC...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp TCCTCTTCTCAACGTCCTCCCGGGAGCGCTCCACATTTCGAAGGCTaGTTTCCAGGGCCGCGAATTTCTTCCTCTCCCTCTCGAGTTCTT +
Preference number: 5 (lower is better)
Translates to: SSSQRPPGSAPHFEG*FPGPRISSSPSRVL
Trigger: AAGAACTCGAGAGGGAGAGGAAGAAATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCAGCTGCTTCACAAGGTaGTCCTGCCCGGGCAGGCGG +
Preference number: 5 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPSCFTR*SCPGRR
Trigger: CCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCT...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGGGCACTGGAGCCTTCTaGGCATCGTTTTTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: QWNNAILGAQHRVASVLVGTGAF*ASFFWA
Trigger: TGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCC...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCACCGGTTGGGAAGCGTTaGAGTCCTTTTACGGGATTG +
Preference number: 5 (lower is better)
Translates to: LGAQHRVASVLVCSCTLSPVGKR*SPFTGL
Trigger: CAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGG...TGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTGCAGCCCTGTGGCTTaGAGTCCTCTTCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: QWNNAILGAQHRVASVLVCSPVA*SPLRPC
Trigger: ACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTGGTGCATCCTTAGACTaGGGGAAGAGGACTTCGTGG +
Preference number: 5 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCGASLD*GKRTSW
Trigger: CCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACC...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTAAGGTGGCGCAAGTCTaGGGACATAGTTCGCCTGTG +
Preference number: 5 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGKVAQV*GHSSPV
Trigger: CACAGGCGAACTATGTCCCAAGACTTGCGCCACCTT...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp AGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTACAAGAGCATCTCTCTaGGAGTCACTGGCAGGGGGA +
Preference number: 5 (lower is better)
Translates to: STGWQVSWCAPVHSQLLCTRASL*ESLAGG
Trigger: TCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGT...ACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGTCCTCGCCAGAGTTCTaGCTTCCAGCCTCCATTTCA +
Preference number: 5 (lower is better)
Translates to: QWNNAILGAQHRVASVLVSSPEF*LPASIS
Trigger: TGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGA...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 90 bp TGGTCATTGGAAAGGTGGCGCAAGTCTTGGGACATAGTTCGCCTGTaGCCTTCTCCTGCCTTAGCCTCTGAAGATGGAGACCAGAACTCA +
Preference number: 5 (lower is better)
Translates to: WSLERWRKSWDIVRL*PSPALASEDGDQNS
Trigger: TGAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 90 bp TGCTGGTGGTGCCTTGGAATGCGGACGTCAGGAAACACTTCCGGTTaGGAAGCGTTTGAGTCCTTTTACGGGATTGCATCTTCCAGTCTC +
Preference number: 5 (lower is better)
Translates to: CWWCLGMRTSGNTSG*EAFESFYGIASSSL
Trigger: GAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTATCACAGTGGCCAGGTaGTCCACGCTCATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGITVAR*STLILL
Trigger: CAACAAGATGAGCGTGGACAACCTGGCCACTGTGAT...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CAGTGGAATAACGCAATCCTTGGAGCACAGCACAGGGTGGCAAGTGTCCTGGTGAGTCCTTTTACGGGATaGCATCTTCCAGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: QWNNAILGAQHRVASVLVSPFTG*HLPVSW
Trigger: CCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACT...CACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp ACAGCACAGGGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTCTCTCGAGTTCTTCATaGAGCCTCACCACCTTAGCC +
Preference number: 5 (lower is better)
Translates to: TAQGGKCPGVLLYTLNFCLSSSS*SLTTLA
Trigger: GGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAG...ACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACCCTGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp GGTTCACCCCGATCACAGTGGCCAGGTTGTCCACGCTCATCTTGTTaGCGGCACAGTTCAGCTGGATTTCATGCAGAAATCTGCAGATGT +
Preference number: 5 (lower is better)
Translates to: GSPRSQWPGCPRSSC*RHSSAGFHAEICRC
Trigger: ACATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp CCTTGGAATGCGGACGTCAGGAAACACTTCCGGTTGGGAAGCGTTTaGGTCCTTTTACGGGATTGCATCTTCCAGTCTCCTGGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: PWNADVRKHFRLGSV*VLLRDCIFQSPGFS
Trigger: GGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTAAGGTGGCGCAAGTCTaGGGACATAGTTCGCCTGTG +
Preference number: 5 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAKVAQV*GHSSPV
Trigger: CACAGGCGAACTATGTCCCAAGACTTGCGCCACCTT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 90 bp TGCTTCTGGGTTTCTATTTCCTTCTGTAGGCTCTGGACTGTCCTCTaGAGAGAATCAAGGTCATCCTCGCCAGAGTTCTTGCTTCCAGCC +
Preference number: 5 (lower is better)
Translates to: CFWVSISFCRLWTVL*RESRSSSPEFLLPA
Trigger: GGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp AGCGACCAGAACCATCTGACTAGGCAAGACAGCCACAGAGACAACAAAGAACTGTTGTCCACGCTCATCTaGTTGACGGCACAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: SDQNHLTRQDSHRDNKELLSTLI*LTAQFS
Trigger: GCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAA...CAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTATCACAGTGGCCAGGTaGTCCACGCTCATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAITVAR*STLILL
Trigger: CAACAAGATGAGCGTGGACAACCTGGCCACTGTGAT...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACAACAAGAGCATCTCTCTaGGAGTCACTGGCAGGGGGA +
Preference number: 5 (lower is better)
Translates to: GVLLYTLNFCVFAEDCGTTRASL*ESLAGG
Trigger: TCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGT...TGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp AGCGACCAGAACCATCTGACTAGGCAAGACAGCCACAGAGACAACAAAGAACTGCTCTCGAGTTCTTCATaGAGCCTCACCACCTTAGCC +
Preference number: 5 (lower is better)
Translates to: SDQNHLTRQDSHRDNKELLSSSS*SLTTLA
Trigger: GGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAG...CAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GCAGGGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTTGCAGCCCTGTGGCTTaGAGTCCTCTTCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: AGRPLWPESNQRYCWLVVCSPVA*SPLRPC
Trigger: ACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCA...AACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GGTGGCAAGTGTCCTGGTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTCATGGTCATCACTCTTaGGATCTGAGGAGTCCCTCT +
Preference number: 5 (lower is better)
Translates to: GGKCPGVLLYTLNFCVFAHGHHS*DLRSPS
Trigger: AGAGGGACTCCTCAGATCCAAAGAGTGATGACCATG...AGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACACCAGGACACTTGCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATGGTGCATCCTTAGACTaGGGGAAGAGGACTTCGTGG +
Preference number: 5 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHGASLD*GKRTSW
Trigger: CCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACC...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCGGCACTGGAGCCTTCTaGGCATCGTTTTTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSGTGAF*ASFFWA
Trigger: TGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCC...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TTTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATGGCACTGGAGCCTTCTaGGCATCGTTTTTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: FGPGHTLEDSSSLFPQWNGTGAF*ASFFWA
Trigger: TGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCC...ATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCTCCTCGCCAGAGTTCTaGCTTCCAGCCTCCATTTCA +
Preference number: 5 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPSSPEF*LPASIS
Trigger: TGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGA...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCCTCTCGAGTTCTTCATaGAGCCTCACCACCTTAGCC +
Preference number: 5 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPLSSSS*SLTTLA
Trigger: GGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAG...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp AGGACTTCGTGGTCTCTGATCATCATGGTCATCACTCTTTGGATCTaGGGAGTCCCTCTCATAATCACAGCTGGGTCTTCAACCTTCGAC +
Preference number: 5 (lower is better)
Translates to: RTSWSLIIMVITLWI*GVPLIITAGSSTFD
Trigger: GTCGAAGGTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGACCACGAAGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATATTGTCCACGCTCATCTaGTTGACGGCACAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: LDLVIHWKIPVHSSHSGILSTLI*LTAQFS
Trigger: GCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAA...TATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCCATGGTCATCACTCTTaGGATCTGAGGAGTCCCTCT +
Preference number: 5 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPHGHHS*DLRSPS
Trigger: AGAGGGACTCCTCAGATCCAAAGAGTGATGACCATG...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GCAGGGAGACCATTGTGGCCAGAGAGTAATCAGCGATATTGTTGGTTGGTTGTTAGTCCTTTTACGGGATaGCATCTTCCAGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: AGRPLWPESNQRYCWLVVSPFTG*HLPVSW
Trigger: CCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACT...AACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCGGTTGGGAAGCGTTaGAGTCCTTTTACGGGATTG +
Preference number: 5 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHPVGKR*SPFTGL
Trigger: CAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGG...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTCCTCGCCAGAGTTCTaGCTTCCAGCCTCCATTTCA +
Preference number: 5 (lower is better)
Translates to: VIHWKIPVHSSHSGITQSSSPEF*LPASIS
Trigger: TGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGA...GGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CTGGCCTGGGGTCCTGAGATGTCACACACCTTAAATGTCTCCTTTGGACCTGGTGACTTCACAAACTCCTaGACTTCTTCTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: LAWGPEMSHTLNVSFGPGDFTNS*TSSSKT
Trigger: AGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTC...ACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp AGGAGCATGAAGAAATGGAGTGGAGTTGACTGTCCCTGCCACACCACTCAGACCGACTTCACAAACTCCTaGACTTCTTCTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: RSMKKWSGVDCPCHTTQTDFTNS*TSSSKT
Trigger: AGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTC...GGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATCCCGCCTCCGCTTTCAAATaGAAATCCCAGTTCCTTGGC +
Preference number: 5 (lower is better)
Translates to: CSCTLSTSVYLLRIVAHPASAFK*KSQFLG
Trigger: GCCAAGGAACTGGGATTTCAATTTGAAAGCGGAGGC...GGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTTTGTCCACGCTCATCTaGTTGACGGCACAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILLSTLI*LTAQFS
Trigger: GCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAA...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTGTGCTCCTGTACACTCTCAACTTCTGTGTATTTGCTGAGGATTGTGGCACATAGTCCTTTTACGGGATaGCATCTTCCAGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: VCSCTLSTSVYLLRIVAHSPFTG*HLPVSW
Trigger: CCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACT...ATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTACAGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GTTTGCATATATGTATGGGCAGCATATGTATATATGGTGTCCTCAGAGGGTGTCACAAGAGCATCTCTCTaGGAGTCACTGGCAGGGGGA +
Preference number: 5 (lower is better)
Translates to: VCIYVWAAYVYMVSSEGVTRASL*ESLAGG
Trigger: TCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGT...GACACCCTCTGAGGACACCATATATACATATGCTGCCCATACATATATGCAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp CATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAACGCAATCCTTCATGGTCATCACTCTTaGGATCTGAGGAGTCCCTCT +
Preference number: 5 (lower is better)
Translates to: HTLEDSSSLFPQWNNAILHGHHS*DLRSPS
Trigger: AGAGGGACTCCTCAGATCCAAAGAGTGATGACCATG...AAGGATTGCGTTATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 90 bp GTCTTGGGACATAGTTCGCCTGTGCCCTTCTCCTGCCTTAGCCTCTaGAGATGGAGACCAGAACTCATTTTTAAAGATTTCCAGTTTACT +
Preference number: 5 (lower is better)
Translates to: VLGHSSPVPFSCLSL*RWRPELIFKDFQFT
Trigger: AGTAAACTGGAAATCTTTAAAAATGAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GACTATTCACTATACAAATCCACACCCCTAAAGTCATTTCATAGTTGGAAACCTAAGGTGGCGCAAGTCTaGGGACATAGTTCGCCTGTG +
Preference number: 5 (lower is better)
Translates to: DYSLYKSTPLKSFHSWKPKVAQV*GHSSPV
Trigger: CACAGGCGAACTATGTCCCAAGACTTGCGCCACCTT...AGGTTTCCAACTATGAAATGACTTTAGGGGTGTGGATTTGTATAGTGAATAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp TTGGACCTGGTCATACACTGGAAGATTCCAGTTCACTCTTCCCACAGTGGAATAGACTTCACAAACTCCTaGACTTCTTCTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: LDLVIHWKIPVHSSHSGIDFTNS*TSSSKT
Trigger: AGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTC...TATTCCACTGTGGGAAGAGTGAACTGGAATCTTCCAGTGTATGACCAGGTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS-3UTR CAA 90 bp GACTATTCACTATACAAATCCACACCCCTAAAGTCATTTCATAGTTGGAAACCTCCGGTTGGGAAGCGTTaGAGTCCTTTTACGGGATTG +
Preference number: 5 (lower is better)
Translates to: DYSLYKSTPLKSFHSWKPPVGKR*SPFTGL
Trigger: CAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGG...AGGTTTCCAACTATGAAATGACTTTAGGGGTGTGGATTTGTATAGTGAATAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113637.9
CDS GCA 72 bp GAGGGCCGCTCCCCCGCATCGAAAGCATCTCTCAGCTaGTTCACAAGGTTGTCCTGCCCGGGCAGGCGGAAG +
Preference number: 6 (lower is better)
Translates to: EGRSPASKASLS*FTRLSCPGRRK
Trigger: CTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp GGCCGCTCCCCCGCATCGAAAGCATCTCTCAGCTGCTTCACAAGGTaGTCCTGCCCGGGCAGGCGGAAGATGCCCTCTTCACTCACACCA +
Preference number: 6 (lower is better)
Translates to: GRSPASKASLSCFTR*SCPGRRKMPSSLTP
Trigger: TGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TTCCGTGGCATCCCACCCCACAGAGCTTCGCGGCACTaGAGCCTTCTTGGCATCGTTTTTCTGGGCAGGGGG +
Preference number: 6 (lower is better)
Translates to: FRGIPPHRASRH*SLLGIVFLGRG
Trigger: CCCCCTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TGGGGGCTTTTCCGCTGTCTTCCTGATGCTGGTCACTaGGCAGTGGTCCAGTGGGACTGGTGGCATCAGGAC +
Preference number: 6 (lower is better)
Translates to: WGLFRCLPDAGH*AVVQWDWWHQD
Trigger: GTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGACCAGCATCAGGAAGACAGCGGAAAAGCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp CCCGCATCGAAAGCATCTCTCAGCTGCTTCACAAGGTaGTCCTGCCCGGGCAGGCGGAAGATGCCCTCTTCA +
Preference number: 6 (lower is better)
Translates to: PASKASLSCFTR*SCPGRRKMPSS
Trigger: TGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 72 bp CAACGTCCTCCCGGGAGCGCTCCACATTTCGAAGGCTaGTTTCCAGGGCCGCGAATTTCTTCCTCTCCCTCT +
Preference number: 6 (lower is better)
Translates to: QRPPGSAPHFEG*FPGPRISSSPS
Trigger: AGAGGGAGAGGAAGAAATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp CTTCGCGGCACTGGAGCCTTCTTGGCATCGTTTTTCTaGGCAGGGGGTGAGATCGGTGCATCCTTAGACTTG +
Preference number: 6 (lower is better)
Translates to: LRGTGAFLASFF*AGGEIGASLDL
Trigger: CAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCCGCGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TGCTGTGTTACTGAAGCTGTCTGTCCTAGAAAGGGGTaGGTCTTCCGTGGCATCCCACCCCACAGAGCTTCG +
Preference number: 6 (lower is better)
Translates to: CCVTEAVCPRKG*VFRGIPPHRAS
Trigger: CGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTTCAGTAACACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TTTTCCGCTGTCTTCCTGATGCTGGTCACTGGGCAGTaGTCCAGTGGGACTGGTGGCATCAGGACTACTTGC +
Preference number: 6 (lower is better)
Translates to: FSAVFLMLVTGQ*SSGTGGIRTTC
Trigger: GCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGACCAGCATCAGGAAGACAGCGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp GACCTGATGAGGTTCACCCCGATCACAGTGGCCAGGTaGTCCACGCTCATCTTGTTGACGGCACAGTTCAGC +
Preference number: 6 (lower is better)
Translates to: DLMRFTPITVAR*STLILLTAQFS
Trigger: GCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 72 bp GAAAGGTGGCGCAAGTCTTGGGACATAGTTCGCCTGTaGCCTTCTCCTGCCTTAGCCTCTGAAGATGGAGAC +
Preference number: 6 (lower is better)
Translates to: ERWRKSWDIVRL*PSPALASEDGD
Trigger: GTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TGTCTTCCTGATGCTGGTCACTGGGCAGTGGTCCAGTaGGACTGGTGGCATCAGGACTACTTGCTGTGTTAC +
Preference number: 6 (lower is better)
Translates to: CLPDAGHWAVVQ*DWWHQDYLLCY
Trigger: GTAACACAGCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTGCCCAGTGACCAGCATCAGGAAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp GAAGTCCGCTGGTCATTGGAAAGGTGGCGCAAGTCTTaGGACATAGTTCGCCTGTGCCCTTCTCCTGCCTTA +
Preference number: 6 (lower is better)
Translates to: EVRWSLERWRKS*DIVRLCPSPAL
Trigger: TAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGACCAGCGGACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp AGAAGTCCGCTGGTCATTGGAAAGGTGGCGCAAGTCTaGGGACATAGTTCGCCTGTGCCCTTCTCCTGCCTT +
Preference number: 6 (lower is better)
Translates to: RSPLVIGKVAQV*GHSSPVPFSCL
Trigger: AAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGACCAGCGGACTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 72 bp GGAAGATGCCCTCTTCACTCACACCATGTTCCAGGATaGACTCAGCGCACTTCTCCACCAAGATGGGCACCA +
Preference number: 6 (lower is better)
Translates to: GRCPLHSHHVPG*TQRTSPPRWAP
Trigger: TGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 72 bp CAGTGGTCCAGTGGGACTGGTGGCATCAGGACTACTTaGTGTGTTACTGAAGCTGTCTGTCCTAGAAAGGGG +
Preference number: 6 (lower is better)
Translates to: QWSSGTGGIRTT*CVTEAVCPRKG
Trigger: CCCCTTTCTAGGACAGACAGCTTCAGTAACACAGCAAGTAGTCCTGATGCCACCAGTCCCACTGGACCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp ACCCCGATCACAGTGGCCAGGTTGTCCACGCTCATCTaGTTGACGGCACAGTTCAGCTGGATTTCATGCAGA +
Preference number: 6 (lower is better)
Translates to: TPITVARLSTLI*LTAQFSWISCR
Trigger: TCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp TTCTGGGCAGGGGGTGAGATCGGTGCATCCTTAGACTaGGGGAAGAGGACTTCGTGGTCTCTGATCATCATG +
Preference number: 6 (lower is better)
Translates to: FWAGGEIGASLD*GKRTSWSLIIM
Trigger: CATGATGATCAGAGACCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp TCAACCTTCGACCTGATGAGGTTCACCCCGATCACAGTGGCCAGGTaGTCCACGCTCATCTTGTTGACGGCACAGTTCAGCTGGATTTCA +
Preference number: 6 (lower is better)
Translates to: STFDLMRFTPITVAR*STLILLTAQFSWIS
Trigger: TGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTCGAAGGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 72 bp GCGGACGTCAGGAAACACTTCCGGTTGGGAAGCGTTTaGGTCCTTTTACGGGATTGCATCTTCCAGTCTCCT +
Preference number: 6 (lower is better)
Translates to: ADVRKHFRLGSV*VLLRDCIFQSP
Trigger: AGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp TGCGGACGTCAGGAAACACTTCCGGTTGGGAAGCGTTaGAGTCCTTTTACGGGATTGCATCTTCCAGTCTCC +
Preference number: 6 (lower is better)
Translates to: CGRQETLPVGKR*SPFTGLHLPVS
Trigger: GGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp AGGTTCACCCCGATCACAGTGGCCAGGTTGTCCACGCTCATCTTGTaGACGGCACAGTTCAGCTGGATTTCATGCAGAAATCTGCAGATG +
Preference number: 6 (lower is better)
Translates to: RFTPITVARLSTLIL*TAQFSWISCRNLQM
Trigger: CATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp ATGAGGTTCACCCCGATCACAGTGGCCAGGTTGTCCACGCTCATCTaGTTGACGGCACAGTTCAGCTGGATTTCATGCAGAAATCTGCAG +
Preference number: 6 (lower is better)
Translates to: MRFTPITVARLSTLI*LTAQFSWISCRNLQ
Trigger: CTGCAGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp GCCTTGGAATGCGGACGTCAGGAAACACTTCCGGTTGGGAAGCGTTaGAGTCCTTTTACGGGATTGCATCTTCCAGTCTCCTGGGTTTTC +
Preference number: 6 (lower is better)
Translates to: ALECGRQETLPVGKR*SPFTGLHLPVSWVF
Trigger: GAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 72 bp CGATCACAGTGGCCAGGTTGTCCACGCTCATCTTGTTaGCGGCACAGTTCAGCTGGATTTCATGCAGAAATC +
Preference number: 6 (lower is better)
Translates to: RSQWPGCPRSSC*RHSSAGFHAEI
Trigger: GATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS GCA 72 bp AAAGATTTCCAGTTTACTGCTGGTGGTGCCTTGGAATaGGGACGTCAGGAAACACTTCCGGTTGGGAAGCGT +
Preference number: 6 (lower is better)
Translates to: KDFQFTAGGALE*GRQETLPVGKR
Trigger: ACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TCTTTGGATCTGAGGAGTCCCTCTCATAATCACAGCTaGGTCTTCAACCTTCGACCTGATGAGGTTCACCCC +
Preference number: 6 (lower is better)
Translates to: SLDLRSPSHNHS*VFNLRPDEVHP
Trigger: GGGGTGAACCTCATCAGGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TGCCTTGGAATGCGGACGTCAGGAAACACTTCCGGTTaGGAAGCGTTTGAGTCCTTTTACGGGATTGCATCT +
Preference number: 6 (lower is better)
Translates to: CLGMRTSGNTSG*EAFESFYGIAS
Trigger: AGATGCAATCCCGTAAAAGGACTCAAACGCTTCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp CCGATCACAGTGGCCAGGTTGTCCACGCTCATCTTGTaGACGGCACAGTTCAGCTGGATTTCATGCAGAAAT +
Preference number: 6 (lower is better)
Translates to: PITVARLSTLIL*TAQFSWISCRN
Trigger: ATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp GGGGAAGAGGACTTCGTGGTCTCTGATCATCATGGTCATCACTCTTaGGATCTGAGGAGTCCCTCTCATAATCACAGCTGGGTCTTCAAC +
Preference number: 6 (lower is better)
Translates to: GEEDFVVSDHHGHHS*DLRSPSHNHSWVFN
Trigger: GTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGACCACGAAGTCCTCTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp ACCTGCTTCTGGGTTTCTATTTCCTTCTGTAGGCTCTaGACTGTCCTCTGCAGAGAATCAAGGTCATCCTCG +
Preference number: 6 (lower is better)
Translates to: TCFWVSISFCRL*TVLCRESRSSS
Trigger: CGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp CTCTGCAGAGAATCAAGGTCATCCTCGCCAGAGTTCTaGCTTCCAGCCTCCATTTCAGAGTCTGTGCTAACA +
Preference number: 6 (lower is better)
Translates to: LCRESRSSSPEF*LPASISESVLT
Trigger: TGTTAGCACAGACTCTGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp GGATCCGTCTTTGTCTTGGGCTTCTCCATCGACTTCACAAACTCCTaGACTTCTTCTTCCAAGACTCTGTTCCTCTTCTCAACGTCCTCC +
Preference number: 6 (lower is better)
Translates to: GSVFVLGFSIDFTNS*TSSSKTLFLFSTSS
Trigger: GGAGGACGTTGAGAAGAGGAACAGAGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 72 bp AATTTCCCAGCTTCTTCGGGGTTTGTGGCAATTTCTTaGACTGTACTGCCTGGCAGATACATGCAGCCCTGT +
Preference number: 6 (lower is better)
Translates to: NFPASSGFVAIS*TVLPGRYMQPC
Trigger: ACAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CAA 90 bp TCAAAGACAAATTTCCCAGCTTCTTCGGGGTTTGTGGCAATTTCTTaGACTGTACTGCCTGGCAGATACATGCAGCCCTGTGGCTTTGAG +
Preference number: 6 (lower is better)
Translates to: SKTNFPASSGFVAIS*TVLPGRYMQPCGFE
Trigger: CTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS CCA 72 bp TTTTTAAAGATTTCCAGTTTACTGCTGGTGGTGCCTTaGAATGCGGACGTCAGGAAACACTTCCGGTTGGGA +
Preference number: 6 (lower is better)
Translates to: FLKISSLLLVVP*NADVRKHFRLG
Trigger: TCCCAACCGGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9
CDS TCA 72 bp CATAGTTCGCCTGTGCCCTTCTCCTGCCTTAGCCTCTaGAGATGGAGACCAGAACTCATTTTTAAAGATTTC +
Preference number: 6 (lower is better)
Translates to: HSSPVPFSCLSL*RWRPELIFKDF
Trigger: GAAATCTTTAAAAATGAGTTCTGGTCTCCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071024.7
ENSMUST00000101197.9
ENSMUST00000113637.9