RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGAP23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049807

Ensembl transcript IDs: ENSMUST00000093940.4, ENSMUST00000107601.8, ENSMUST00000121799.8, ENSMUST00000142465.8

Found 375 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCGGGCGACAGTaGGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTGCCACG +
Preference number: 1 (lower is better)
Translates to: VAAPATPAPPRLGRQ*APQPHGQHVVGGAT
Trigger: CGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCCCACTGTCGCCCGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCAC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 90 bp GTTCGTCGTCCGCCTCGTCGCCCGCGCCCGCGCGCCGCCCGCCGGTaGCCGAGCACACGCTACGGTCCATGGTGGACAGGGTGGAGTAGC +
Preference number: 1 (lower is better)
Translates to: VRRPPRRPRPRAARR*PSTRYGPWWTGWSS
Trigger: GCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGCGGCGCGCGGGCGCGGGCGACGAGGCGGACGACGAAC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 90 bp CCCTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCCCGCGCCTCC +
Preference number: 1 (lower is better)
Translates to: PSGGSCVPTAALCAS*SESSSVLLPRPRAS
Trigger: GGAGGCGCGGGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 90 bp CCGCGCGCCGCCCGCCGGTGCCCGAGCACACGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCGAGACGATGGAGCGCGTGTCCGCCG +
Preference number: 1 (lower is better)
Translates to: PRAARRCPSTRYGPW*TGWSSPRRWSACPP
Trigger: CGGCGGACACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGCGGCGCGCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 90 bp CGCCCGCGCGCCGCCCGCCGGTGCCCGAGCACACGCTACGGTCCATaGTGGACAGGGTGGAGTAGCCCGAGACGATGGAGCGCGTGTCCG +
Preference number: 1 (lower is better)
Translates to: RPRAARRCPSTRYGP*WTGWSSPRRWSACP
Trigger: CGGACACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGCGGCGCGCGGGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 90 bp GGCAGCTGCCCCTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCC +
Preference number: 1 (lower is better)
Translates to: GSCPSGGSCVPTAAL*ASCSESSSVLLPRP
Trigger: GGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 90 bp GCGACAGTGGGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTaGCACGGAGACGTAGCCGCAGGGCTTCCACGCGCGAAGGTCGTG +
Preference number: 1 (lower is better)
Translates to: ATVGAAAARPACRRR*HGDVAAGLPRAKVV
Trigger: CACGACCTTCGCGCGTGGAAGCCCTGCGGCTACGTCTCCGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCCCACTGTCGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 90 bp GCCCGCCGGTGCCCGAGCACACGCTACGGTCCATGGTGGACAGGGTaGAGTAGCCCGAGACGATGGAGCGCGTGTCCGCCGCAGGCCGTT +
Preference number: 1 (lower is better)
Translates to: ARRCPSTRYGPWWTG*SSPRRWSACPPQAV
Trigger: AACGGCCTGCGGCGGACACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 90 bp CCCAGCTCCTTCCACTCGTTGAAGTTGAGGTCGGTCAGCGGGCTCTaGACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGC +
Preference number: 1 (lower is better)
Translates to: PSSFHSLKLRSVSGL*TTTVWRRQLLRRRR
Trigger: GCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCTGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 90 bp TCGTTGAAGTTGAGGTCGGTCAGCGGGCTCTGCACCACCACTGTGTaGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCGGGCGACAGT +
Preference number: 1 (lower is better)
Translates to: SLKLRSVSGLCTTTV*RRQLLRRRRVSGDS
Trigger: ACTGTCGCCCGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAACGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 90 bp GGGTATCACAGACACTGGTGGAGGCGGGCGGCAGCTGAGCGGCGCTaGGGCAGACCCTGCAGGGCCCCTAGGTCCCCAGATGGCAGTGAT +
Preference number: 1 (lower is better)
Translates to: GYHRHWWRRAAAERR*GRPCRAPRSPDGSD
Trigger: ATCACTGCCATCTGGGGACCTAGGGGCCCTGCAGGGTCTGCCCCAGCGCCGCTCAGCTGCCGCCCGCCTCCACCAGTGTCTGTGATACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR TCA 90 bp GTGATGCGGCGGATGAGGCCCGTGCCTTGGTGGACTCCAGGCTGCTaGGGCCAGAGTCCTTATTGTCGCTGTGCGGTCGCACGCCCACGG +
Preference number: 1 (lower is better)
Translates to: VMRRMRPVPWWTPGC*GQSPYCRCAVARPR
Trigger: CCGTGGGCGTGCGACCGCACAGCGACAATAAGGACTCTGGCCTCAGCAGCCTGGAGTCCACCAAGGCACGGGCCTCATCCGCCGCATCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR TCA 90 bp AATAGCCCCTCCCCTCTCCTGAGGACTCCCACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGC +
Preference number: 1 (lower is better)
Translates to: NSPSPLLRTPTSVWL*FLCPPHLTPACHTS
Trigger: GCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTGGGAGTCCTCAGGAGAGGGGAGGGGCTATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR TCA 90 bp CGACTGAAGGCGAGTCCGCATGCTAAGCTGCCGAAGGATGCAGGGTaGACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAG +
Preference number: 1 (lower is better)
Translates to: RLKASPHAKLPKDAG*TWRRKMPAVRGSRQ
Trigger: CTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCACCCTGCATCCTTCGGCAGCTTAGCATGCGGACTCGCCTTCAGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR GCA 90 bp CCTGTATTTTTCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTaGATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGC +
Preference number: 1 (lower is better)
Translates to: PVFFLLYETWAVHPH*MGHQGSLSRLTEKG
Trigger: GCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGAAAAATACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR CCA 90 bp GGGACTAGTGCTTTAGGTCTATTTACAATGTGTGGGAAGAGAAGCTaGTCCCACCCACCCTGCAAGAACAGCCCAGCTGAGACTCTATAC +
Preference number: 1 (lower is better)
Translates to: GTSALGLFTMCGKRS*SHPPCKNSPAETLY
Trigger: GTATAGAGTCTCAGCTGGGCTGTTCTTGCAGGGTGGGTGGGACCAGCTTCTCTTCCCACACATTGTAAATAGACCTAAAGCACTAGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp TGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCGGGCCAGCTGCCCCTCGGGTaGCTCCTGCGTCCCCACCGC +
Preference number: 2 (lower is better)
Translates to: CTTTVWRRQLLRRRRVSGQLPLG*LLRPHR
Trigger: GCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTG...GCCCGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CAA 90 bp CCCGGCAGCTGCCCCTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTaGTGCGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTGCCCAGG +
Preference number: 2 (lower is better)
Translates to: PGSCPSGGSCVPTAA*CASCSESSSVLLPR
Trigger: CCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTGCCGGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp CCCTCCGTGTCCGTCTCCACGTGGCTCAGCTCGCTGCGTTCGTCGTCCGCCTCGCCCTCGGGTGGCTCCTaGGTCCCCACCGCAGCCTTG +
Preference number: 2 (lower is better)
Translates to: PSVSVSTWLSSLRSSSASPSGGS*VPTAAL
Trigger: CAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG...CGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGACGGACACGGAGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp GTCGGTCAGCGGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGGCAGCGACTCCTGGCTaGTGGACGATGCCGAGCCCG +
Preference number: 2 (lower is better)
Translates to: VGQRALHHHCVAAPATPAAATPG*WTMPSP
Trigger: CGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGC...CGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp GGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTGGCATGAGATGGTGTaGGCTGAAGGATGGCCGGCG +
Preference number: 2 (lower is better)
Translates to: GLCTTTVWRRQLLRRRRVWHEMV*AEGWPA
Trigger: CGCCGGCCATCCTTCAGCTCACACCATCTCATGCCA...GACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp GTCTCCACGTGGCTCAGCTCGCTGCGTTCGTCGTCCGCCTCGTCGCCCGCGCCCGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTG +
Preference number: 2 (lower is better)
Translates to: VSTWLSSLRSSSASSPAPALCAS*SESSSV
Trigger: CACCGACGATGACTCCGAGCAGGAGGCGCACAAGGC...GGGCGCGGGCGACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp GTCGGTCAGCGGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCA +
Preference number: 2 (lower is better)
Translates to: VGQRALHHHCVAAPATPAPTAAL*ASCSES
Trigger: TGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGG...CGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp GGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTGCCACGGAGACGTAGCCCGTAAGGCTCTTTCTTaGGGACCCAGGAACCCTTGG +
Preference number: 2 (lower is better)
Translates to: GAAAARPACRRRCHGDVARKALS*GPRNPW
Trigger: CCAAGGGTTCCTGGGTCCCCAAGAAAGAGCCTTACG...GGCTACGTCTCCGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp CCCTCCACCCAGCTCCTTCCACTCGTTGAAGTTGAGGTCGGTCAGCGGGCTCTGCGATGCCGAGCCCGGTaGCTCCGGACCGCGGGGACA +
Preference number: 2 (lower is better)
Translates to: PSTQLLPLVEVEVGQRALRCRAR*LRTAGT
Trigger: TGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCG...CAGAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCTGGGTGGAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp GCTGCTGAGGCCAGAGTCCTTATTGTCGCTGTGCGGTCGCACGCCCACGGACTCGCGACTCCTGGCTGCTaGACGATGCCGAGCCCGGTG +
Preference number: 2 (lower is better)
Translates to: AAEARVLIVAVRSHAHGLATPGC*TMPSPV
Trigger: CACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGC...GAGTCCGTGGGCGTGCGACCGCACAGCGACAATAAGGACTCTGGCCTCAGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CCCTCCGTGTCCGTCTCCACGTGGCTCAGCTCGCTGCGTTCGTCGTCCGCCTCGACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCAC +
Preference number: 2 (lower is better)
Translates to: PSVSVSTWLSSLRSSSASTSVWL*FLCPPH
Trigger: GTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGT...CGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGACGGACACGGAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACTCAGTCCTGCCTCTGTaGAAGTGGCCTCAACCCAGC +
Preference number: 2 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNSVLPL*KWPQPS
Trigger: GCTGGGTTGAGGCCACTTCCACAGAGGCAGGACTGA...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp TGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCGGGCGGTAACAAACACCTTTaGACTGTGACTACACACACA +
Preference number: 2 (lower is better)
Translates to: CTTTVWRRQLLRRRRVSGGNKHL*TVTTHT
Trigger: TGTGTGTGTAGTCACAGTGCAAAGGTGTTTGTTACC...GCCCGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp GTTGAAGTTGAGGTCGGTCAGCGGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTAAGGTGCCTGTGTaGACCAAAGGCAGGGTCCTG +
Preference number: 2 (lower is better)
Translates to: VEVEVGQRALHHHCVAAPAKVPV*TKGRVL
Trigger: CAGGACCCTGCCTTTGGTGCACACAGGCACCTTAGC...TGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp GCTGCTGAGGCCAGAGTCCTTATTGTCGCTGTGCGGTCGCACGCCCACGGACTCTTCATCCAAGGGACATaGCTCCCAATAGCCCCTCCC +
Preference number: 2 (lower is better)
Translates to: AAEARVLIVAVRSHAHGLFIQGT*LPIAPP
Trigger: GGGAGGGGCTATTGGGAGTCATGTCCCTTGGATGAA...GAGTCCGTGGGCGTGCGACCGCACAGCGACAATAAGGACTCTGGCCTCAGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACATAAACCCGAAAGACTaGCAGACCTGGGCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNINPKD*QTWAAE
Trigger: CTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTAT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGTCATCGTCGGTGCTaGTGCCCAGGCCCCGCGCCT +
Preference number: 2 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVSHRRC*CPGPAP
Trigger: AGGCGCGGGGCCTGGGCAGCAGCACCGACGATGACT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCG +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPRYGPW*TGWSSP
Trigger: CGGGCTACTCCACCCTGTCCACCATGGACCGTAGCG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGCCCCTCCCCTCTCCTaGGGACTCCCACTTCGGTCT +
Preference number: 2 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEAPPLS*GLPLRS
Trigger: AGACCGAAGTGGGAGTCCTCAGGAGAGGGGAGGGGC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGTTCATCCAAGGGACATaGCTCCCAATAGCCCCTCCC +
Preference number: 2 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVFIQGT*LPIAPP
Trigger: GGGAGGGGCTATTGGGAGTCATGTCCCTTGGATGAA...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAAGTGGGGTTCAGTCCTaGCTCTGTGGAAGTGGCCTC +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPSGVQS*LCGSGL
Trigger: GAGGCCACTTCCACAGAGGCAGGACTGAACCCCACT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGACAGGCGACGGCGTaGCAGAGTGTCGCATGGCAT +
Preference number: 2 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVRQATA*QSVAWH
Trigger: ATGCCATGCGACACTCTGGCACGCCGTCGCCTGTCT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCATGTGGGAAGAGAAGCTaGTCCCACCCACCCTGCAAG +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPCGKRS*SHPPCK
Trigger: CTTGCAGGGTGGGTGGGACCAGCTTCTCTTCCCACA...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGGACCCAGGAACCCTTaGACTTGGCTGAGCTACAGG +
Preference number: 2 (lower is better)
Translates to: SPAETLYISAGQSSSRLKGPRNP*TWLSYR
Trigger: CCTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACCGAAGGATGCAGGGTaGACATGGAGGAGGAAGATG +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPPKDAG*TWRRKM
Trigger: CATCTTCCTCCTCCATGTTCACCCTGCATCCTTCGG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGTCAGTCCTGCCTCTGTaGAAGTGGCCTCAACCCAGC +
Preference number: 2 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQSVLPL*KWPQPS
Trigger: GCTGGGTTGAGGCCACTTCCACAGAGGCAGGACTGA...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCAC +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPTSVWL*FLCPPH
Trigger: GTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAATAAACCCGAAAGACTaGCAGACCTGGGCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPINPKD*QTWAAE
Trigger: CTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTAT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGCTAAGGTGCCTGTGTaGACCAAAGGCAGGGTCCTG +
Preference number: 2 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEAKVPV*TKGRVL
Trigger: CAGGACCCTGCCTTTGGTGCACACAGGCACCTTAGC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCAC +
Preference number: 2 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQTSVWL*FLCPPH
Trigger: GTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACAAGAACAGCCCAGCTaGGACTCTATACATCAGTGC +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPQEQPS*DSIHQC
Trigger: GCACTGATGTATAGAGTCTCAGCTGGGCTGTTCTTG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCAC +
Preference number: 2 (lower is better)
Translates to: KMPAVRGSRQIHRSESLETSVWL*FLCPPH
Trigger: GTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGT...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAAGTGGGGTTCAGTCCTaGCTCTGTGGAAGTGGCCTC +
Preference number: 2 (lower is better)
Translates to: YSKSLHKPERLTDLGSRASGVQS*LCGSGL
Trigger: GAGGCCACTTCCACAGAGGCAGGACTGAACCCCACT...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCATTCATCCAAGGGACATaGCTCCCAATAGCCCCTCCC +
Preference number: 2 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAFIQGT*LPIAPP
Trigger: GGGAGGGGCTATTGGGAGTCATGTCCCTTGGATGAA...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAAACACCTTTGCACTGTaGCTACACACACACACACAT +
Preference number: 2 (lower is better)
Translates to: HFGLALISLPTSPNSSLPNTFAL*LHTHTH
Trigger: ATGTGTGTGTGTGTGTAGTCACAGTGCAAAGGTGTT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR TCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAACACCTTTGCACTGTaGCTACACACACACACACAT +
Preference number: 2 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVNTFAL*LHTHTH
Trigger: ATGTGTGTGTGTGTGTAGTCACAGTGCAAAGGTGTT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGTAACAAACACCTTTaGACTGTGACTACACACACA +
Preference number: 2 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGNKHL*TVTTHT
Trigger: TGTGTGTGTAGTCACAGTGCAAAGGTGTTTGTTACC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGGTAACAAACACCTTTaGACTGTGACTACACACACA +
Preference number: 2 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQGNKHL*TVTTHT
Trigger: TGTGTGTGTAGTCACAGTGCAAAGGTGTTTGTTACC...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCTATTTACAATGTGTaGGAAGAGAAGCTGGTCCCA +
Preference number: 2 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYSIYNV*EEKLVP
Trigger: TGGGACCAGCTTCTCTTCCCACACATTGTAAATAGA...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR GCA 72 bp CGCCGGGGGCCGCAGCGACTCCTGGCTGCTGGACGATaGCGAGCCCGGTGGCTCCGGACCGCGGGGACACGC +
Preference number: 3 (lower is better)
Translates to: RRGPQRLLAAGR*RARWLRTAGTR
Trigger: GCGTGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGCCCCCGGCG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp CCAGCTACTCCGGCGCCGCCGCGTCTCGGGCGACAGTaGGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGC +
Preference number: 3 (lower is better)
Translates to: PATPAPPRLGRQ*APQPHGQHVVG
Trigger: GCCGACGACATGCTGGCCGTGCGGCTGCGGCGCCCACTGTCGCCCGAGACGCGGCGGCGCCGGAGTAGCTGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp CCCCCTCCGTGTCCGTCTCCACGTGGCTCAGCTCGCTaGGTTCGTCGTCCGCCTCGTCGCCCGCGCCCGCGC +
Preference number: 3 (lower is better)
Translates to: PPPCPSPRGSAR*VRRPPRRPRPR
Trigger: GCGCGGGCGCGGGCGACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGACGGACACGGAGGGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp GGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTaGCACGGAGACGTAGCCGCAGGGCTTCCACGCGCG +
Preference number: 3 (lower is better)
Translates to: GAAAARPACRRR*HGDVAAGLPRA
Trigger: CGCGCGTGGAAGCCCTGCGGCTACGTCTCCGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp CAGCGACTCCTGGCTGCTGGACGATGCCGAGCCCGGTaGCTCCGGACCGCGGGGACACGCCCGGGCCGTACC +
Preference number: 3 (lower is better)
Translates to: QRLLAAGRCRAR*LRTAGTRPGRT
Trigger: GGTACGGCCCGGGCGTGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp GTCGGTCAGCGGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGGTCCCCACCGCAGCCTaGTGCGCCTCCTGCTCGGAG +
Preference number: 3 (lower is better)
Translates to: VGQRALHHHCVAAPATPAVPTAA*CASCSE
Trigger: CTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGAC...CGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp CAGCCTTGTGCGCCTCCTGCTCGGAGTCATCGTCGGTaGTGCTGCCCAGGCCCCGCGCCTCCCGCCGCTTCT +
Preference number: 3 (lower is better)
Translates to: QPCAPPARSHRR*CCPGPAPPAAS
Trigger: AGAAGCGGCGGGAGGCGCGGGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp GGCTCCTGCGTCCCCACCGCAGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCC +
Preference number: 3 (lower is better)
Translates to: GSCVPTAALCAS*SESSSVLLPRP
Trigger: GGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp TTGAGGTCGGTCAGCGGGCTCTGCACCACCACTGTGTaGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCG +
Preference number: 3 (lower is better)
Translates to: LRSVSGLCTTTV*RRQLLRRRRVS
Trigger: CGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp AGACACTGGTGGAGGCGGGCGGCAGCTGAGCGGCGCTaGGGCAGACCCTGCAGGGCCCCTAGGTCCCCAGAT +
Preference number: 3 (lower is better)
Translates to: RHWWRRAAAERR*GRPCRAPRSPD
Trigger: ATCTGGGGACCTAGGGGCCCTGCAGGGTCTGCCCCAGCGCCGCTCAGCTGCCGCCCGCCTCCACCAGTGTCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp CCCTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTG +
Preference number: 3 (lower is better)
Translates to: PSGGSCVPTAAL*ASCSESSSVLL
Trigger: CAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp GCCCGCCGGTGCCCGAGCACACGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCGAGACGATGGAGCGCG +
Preference number: 3 (lower is better)
Translates to: ARRCPSTRYGPW*TGWSSPRRWSA
Trigger: CGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp GCCGCCCGCCGGTGCCCGAGCACACGCTACGGTCCATaGTGGACAGGGTGGAGTAGCCCGAGACGATGGAGC +
Preference number: 3 (lower is better)
Translates to: AARRCPSTRYGP*WTGWSSPRRWS
Trigger: GCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCACCGGCGGGCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp GGTCCATGGTGGACAGGGTGGAGTAGCCCGAGACGATaGAGCGCGTGTCCGCCGCAGGCCGTTCGTCGGGTG +
Preference number: 3 (lower is better)
Translates to: GPWWTGWSSPRR*SACPPQAVRRV
Trigger: CACCCGACGAACGGCCTGCGGCGGACACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp TGCCCGAGCACACGCTACGGTCCATGGTGGACAGGGTaGAGTAGCCCGAGACGATGGAGCGCGTGTCCGCCG +
Preference number: 3 (lower is better)
Translates to: CPSTRYGPWWTG*SSPRRWSACPP
Trigger: CGGCGGACACGCGCTCCATCGTCTCGGGCTACTCCACCCTGTCCACCATGGACCGTAGCGTGTGCTCGGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp GGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTGCCACGGAGACGTAGCCCACTTCGGTCTGGCTTaGATTTCTCTGCCCACCTCA +
Preference number: 3 (lower is better)
Translates to: GAAAARPACRRRCHGDVAHFGLA*ISLPTS
Trigger: TGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG...GGCTACGTCTCCGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CCA 72 bp AGGCGACGGCGTGCCAGAGTGTCGCATGGCATGAGATaGTGTGAGCTGAAGGATGGCCGGCGCGACAGGCGC +
Preference number: 3 (lower is better)
Translates to: RRRRARVSHGMR*CELKDGRRDRR
Trigger: GCGCCTGTCGCGCCGGCCATCCTTCAGCTCACACCATCTCATGCCATGCGACACTCTGGCACGCCGTCGCCT
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp CTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTTGTGCGCCTCCTGCTCGGAGTCTTCTTCCGTTTGCGGTaGACCGCAGAGATGAAGGAG +
Preference number: 3 (lower is better)
Translates to: LGWLLRPHRSLVRLLLGVFFRLR*TAEMKE
Trigger: CTCCTTCATCTCTGCGGTCAACCGCAAACGGAAGAA...GACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR GCA 72 bp TTCCACTCGTTGAAGTTGAGGTCGGTCAGCGGGCTCTaGACCACCACTGTGTGGCGGCGCCAGCTACTCCGG +
Preference number: 3 (lower is better)
Translates to: FHSLKLRSVSGL*TTTVWRRQLLR
Trigger: CCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCACTTCGGTCTGGCTTaGATTTCTCTGCCCACCTCA +
Preference number: 3 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNHFGLA*ISLPTS
Trigger: TGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR GCA 72 bp GTGAGGAGCGACTCCGGTAGTAGTGGGGTTCAGTCCTaGCTCTGTGGAAGTGGCCTCAACCCAGCCTCTGAC +
Preference number: 3 (lower is better)
Translates to: VRSDSGSSGVQS*LCGSGLNPASD
Trigger: GTCAGAGGCTGGGTTGAGGCCACTTCCACAGAGGCAGGACTGAACCCCACTACTACCGGAGTCGCTCCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR TCA 72 bp TCCCCTCTCCTGAGGACTCCCACTTCGGTCTGGCTTTaGTTTCTCTGCCCACCTCACCTAACTCCAGCCTGC +
Preference number: 3 (lower is better)
Translates to: SPLLRTPTSVWL*FLCPPHLTPAC
Trigger: GCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTGGGAGTCCTCAGGAGAGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR TCA 72 bp GCGAGTCCGCATGCTAAGCTGCCGAAGGATGCAGGGTaGACATGGAGGAGGAAGATGCCAGCTGTAAGGGGA +
Preference number: 3 (lower is better)
Translates to: ASPHAKLPKDAG*TWRRKMPAVRG
Trigger: TCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCACCCTGCATCCTTCGGCAGCTTAGCATGCGGACTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGGGACCCAGGAACCCTaGGACTTGGCTGAGCTACAG +
Preference number: 3 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQGTQEP*DLAELQ
Trigger: CTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCCC...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR TCA 72 bp AAGCTGGTCCCACCCACCCTGCAAGAACAGCCCAGCTaGGACTCTATACATCAGTGCCGGACAGAGTTCCTC +
Preference number: 3 (lower is better)
Translates to: KLVPPTLQEQPS*DSIHQCRTEFL
Trigger: GAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCTGTTCTTGCAGGGTGGGTGGGACCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGCGCCGCTTCTTCCGTTaGCGGTTGACCGCAGAGATG +
Preference number: 3 (lower is better)
Translates to: KMPAVRGSRQIHRSESLERRFFR*RLTAEM
Trigger: CATCTCTGCGGTCAACCGCAAACGGAAGAAGCGGCG...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTCACTTCGGTCTGGCTTaGATTTCTCTGCCCACCTCA +
Preference number: 3 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGHFGLA*ISLPTS
Trigger: TGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR TCA 72 bp GACTTTACAGCAAATCTTTGCATAAACCCGAAAGACTaGCAGACCTGGGCAGCAGAGCAGGTCACCCCACTG +
Preference number: 3 (lower is better)
Translates to: DFTANLCINPKD*QTWAAEQVTPL
Trigger: CAGTGGGGTGACCTGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTAAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR TCA 72 bp CAGACCCTAAATCCAGCCTGTATTTTTCCTTCTGTATaGAACTTGGGCGGTCCACCCACACTGCATGGGTCA +
Preference number: 3 (lower is better)
Translates to: QTLNPACIFPSV*NLGGPPTLHGS
Trigger: TGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGAAAAATACAGGCTGGATTTAGGGTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp TGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCGGGCCCGGTAAATGCCAGTTaGTTCCAGCCCCCGGGCCTC +
Preference number: 4 (lower is better)
Translates to: CTTTVWRRQLLRRRRVSGPVNAS*FQPPGL
Trigger: GAGGCCCGGGGGCTGGAATCAACTGGCATTTACCGG...GCCCGAGACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGGTCCTGGGAGGCACTaGGGGCCCGGGGTGGCATGG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTGPGRH*GPGVAW
Trigger: CCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTCAGCTGCCCCTCGGGTaGCTCCTGCGTCCCCACCGC +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTQLPLG*LLRPHR
Trigger: GCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTG...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
3UTR CAA 72 bp TGCCCCTCGGGTGGCTCCTGCGTCCCCACCGCAGCCTaGTGCGCCTCCTGCTCGGAGTCATCGTCGGTGCTG +
Preference number: 4 (lower is better)
Translates to: CPSGGSCVPTAA*CASCSESSSVL
Trigger: CAGCACCGACGATGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCCGGGGTGGCATGGCTaGGCACCGTCTCTCCCCCGC +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNPGWHG*APSLPR
Trigger: GCGGGGGAGAGACGGTGCCCAGCCATGCCACCCCGG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTGTGCGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCCCGCGCCCCAGGCGTTCCCCTCTaGCCTCGGGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: LCASCSESSSVLLPRPRAPGVPL*PRVLGT
Trigger: AGTCCCCAGAACCCGAGGCCAGAGGGGAACGCCTGG...GGCGCGGGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCCCTCGGGTGGCTCCTaGGTCCCCACCGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNPSGGS*VPTAAL
Trigger: CAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCCAGCCGGTCTCCTGTaGGAAGCCCCGCCCTGTGGG +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNPAGLL*EAPPCG
Trigger: CCCACAGGGCGGGGCTTCGCACAGGAGACCGGCTGG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGGCCGCAGCGACTCCTaGCTGCTGGACGATGCCGAG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTGRSDS*LLDDAE
Trigger: CTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGCC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCCTGGGGGCTGCTCCTaGGTTCTGAGGCCGCGGACT +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNPGGCS*VLRPRT
Trigger: AGTCCGCGGCCTCAGAACTCAGGAGCAGCCCCCAGG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp CCCTCCGTGTCCGTCTCCACGTGGCTCAGCTCGCTGCGTTCGTCGTCCGCCTCGGGCCCACGGTTGAGCTaGTCCTGCAGGCTAGACACC +
Preference number: 4 (lower is better)
Translates to: PSVSVSTWLSSLRSSSASGPRLS*SCRLDT
Trigger: GGTGTCTAGCCTGCAGGAGCAGCTCAACCGTGGGCC...CGAGGCGGACGACGAACGCAGCGAGCTGAGCCACGTGGAGACGGACACGGAGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGGGCTTGGGCGGGGCTaGCTCATCCCCAAGGAAGAG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTGLGRG*LIPKEE
Trigger: CTCTTCCTTGGGGATGAGCCAGCCCCGCCCAAGCCC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTALCAS*SESSSV
Trigger: CACCGACGATGACTCCGAGCAGGAGGCGCACAAGGC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCTGGCTGCTGGACGATaGCGAGCCCGGTGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHLAAGR*RARWLR
Trigger: CCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGGCCCACGGTTGAGCTaGTCCTGCAGGCTAGACACC +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTGPRLS*SCRLDT
Trigger: GGTGTCTAGCCTGCAGGAGCAGCTCAACCGTGGGCC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACAGTAGCCCGAGACGATaGAGCGCGTGTCCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNSSPRR*SACPPQ
Trigger: CTGCGGCGGACACGCGCTCCATCGTCTCGGGCTACT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTTGGCATGAGATGGTGTaGGCTGAAGGATGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTWHEMV*AEGWPA
Trigger: CGCCGGCCATCCTTCAGCTCACACCATCTCATGCCA...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp GCTGCTGAGGCCAGAGTCCTTATTGTCGCTGTGCGGTCGCACGCCCACGGACTCAACGGCGGCCTGCCTTaGTGCTGCTGCAGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: AAEARVLIVAVRSHAHGLNGGLP*CCCSPG
Trigger: CCCAGGACTGCAGCAGCATCAAGGCAGGCCGCCGTT...GAGTCCGTGGGCGTGCGACCGCACAGCGACAATAAGGACTCTGGCCTCAGCAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACAGTCATCGTCGGTGCTaGTGCCCAGGCCCCGCGCCT +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHSHRRC*CPGPAP
Trigger: AGGCGCGGGGCCTGGGCAGCAGCACCGACGATGACT...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTACGAGGGGACACCAGTaGTCCTGGACCCAGTGCTTC +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTTRGHQ*SWTQCF
Trigger: GAAGCACTGGGTCCAGGAGCACTGGTGTCCCCTCGT...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTGTGCGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCCCGCGCCGTTGGGCACCGACTGTaGCTCCTTGTCATCAACAGG +
Preference number: 4 (lower is better)
Translates to: LCASCSESSSVLLPRPRAVGHRL*LLVINR
Trigger: CCTGTTGATGACAAGGAGCCACAGTCGGTGCCCAAC...GGCGCGGGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGTAGCAGAGTGGAGGTaGTTCTGGGATGCTGCGGGC +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTVAEWR*FWDAAG
Trigger: GCCCGCAGCATCCCAGAACCACCTCCACTCTGCTAC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
3UTR CAA 72 bp AGGCCCCGCGCCTCCCGCCGCTTCTTCCGTTTGCGGTaGACCGCAGAGATGAAGGAGATCGCCAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: RPRASRRFFRLR*TAEMKEIASIS
Trigger: GGAGATGCTGGCGATCTCCTTCATCTCTGCGGTCAACCGCAAACGGAAGAAGCGGCGGGAGGCGCGGGGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
3UTR CAA 72 bp GGGCCCCCTCCACCCAGCTCCTTCCACTCGTTGAAGTaGAGGTCGGTCAGCGGGCTCTGCACCACCACTGTG +
Preference number: 4 (lower is better)
Translates to: GPPPPSSFHSLK*RSVSGLCTTTV
Trigger: CACAGTGGTGGTGCAGAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCTGGGTGGAGGGGGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACAGACAGGCGACGGCGTaGCAGAGTGTCGCATGGCAT +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNRQATA*QSVAWH
Trigger: ATGCCATGCGACACTCTGGCACGCCGTCGCCTGTCT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACTGCTCCTGGACCCAGTaGTTCAGCAGAGCGGGTAGC +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNCSWTQ*FSRAGS
Trigger: GCTACCCGCTCTGCTGAAGCACTGGGTCCAGGAGCA...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGTGGTTCTGGGATGCTaGGGGCCTCTCCAGAATACG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTVVLGC*GPLQNT
Trigger: CGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCAC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCGATGCCGAGCCCGGTaGCTCCGGACCGCGGGGACA +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVRCRAR*LRTAGT
Trigger: TGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACTGCACCACCACTGTGTaGCGGCGCCAGCTACTCCGG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHCTTTV*RRQLLR
Trigger: CCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGACTCTGAAGGGAGGTaGGGAAAGGCACCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTDSEGR*GKAPGL
Trigger: AAGCCCTGGTGCCTTTCCCCACCTCCCTTCAGAGTC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCCCTCCTGGCCCAGCTaGCTCAAGGCATCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHPSWPS*LKASWE
Trigger: CTCCCAGGATGCCTTGAGCCAGCTGGGCCAGGAGGG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACAGAGGTGCGGGCAGATaGGCGCTGGGAAGCCCAACC +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHRGAGR*ALGSPT
Trigger: GGTTGGGCTTCCCAGCGCCCATCTGCCCGCACCTCT...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAGCCCCGGAACAGGGGAGGGTATCACAGACACTGGTGGAGGCGGGCGGCAGCTGAAGGTTGGCGAGGATaGGCTAGTTCCCAGGACAGG +
Preference number: 4 (lower is better)
Translates to: QPRNRGGYHRHWWRRAAAEGWRG*ASSQDR
Trigger: CCTGTCCTGGGAACTAGCCCATCCTCGCCAACCTTC...AGCTGCCGCCCGCCTCCACCAGTGTCTGTGATACCCTCCCCTGTTCCGGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACATCGTCGGTGCTGCTaGCCAGGCCCCGCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPHRRCC*PGPAPP
Trigger: GGGAGGCGCGGGGCCTGGGCAGCAGCACCGACGATG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CAGCCCCGGAACAGGGGAGGGTATCACAGACACTGGTGGAGGCGGGCGGCAGCTATGACATTGAGGTCCTaGCAGCGCTCATCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: QPRNRGGYHRHWWRRAAAMTLRS*QRSSCR
Trigger: CCTGCAGGATGAGCGCTGGCAGGACCTCAATGTCAT...AGCTGCCGCCCGCCTCCACCAGTGTCTGTGATACCCTCCCCTGTTCCGGGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTCATCCTGAAGACTCTTaGGCAGCAGCAGTGTCCTCG +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTHPEDS*AAAVSS
Trigger: CGAGGACACTGCTGCTGCGCAAGAGTCTTCAGGATG...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACAGCTGCCCCTCGGGTaGCTCCTGCGTCCCCACCGC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPQLPLG*LLRPHR
Trigger: GCGGTGGGGACGCAGGAGCCACCCGAGGGGCAGCTG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACACACGCTACGGTCCATaGTGGACAGGGTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNTRYGP*WTGWSS
Trigger: GCTACTCCACCCTGTCCACCATGGACCGTAGCGTGT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACGATGCCGAGCCCGGTaGCTCCGGACCGCGGGGACA +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPRCRAR*LRTAGT
Trigger: TGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTCCGGGGTGGCATGGCTaGGCACCGTCTCTCCCCCGC +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGPGWHG*APSLPR
Trigger: GCGGGGGAGAGACGGTGCCCAGCCATGCCACCCCGG...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAGGGCCCGGGGTGGCATaGCTGGGCACCGTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPGPGVA*LGTVSP
Trigger: GGGAGAGACGGTGCCCAGCCATGCCACCCCGGGCCC...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGTCCTCCAACCGGTCCTaGGAGGCACTGCGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVSSNRS*EALRAR
Trigger: CCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAGGA...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GGGCTCTGCACCACCACTGTGTGGCGGCGCCAGCTACTCCGGCGCCGCCGCGTCTCTTCATCCTCTCCCTaGAATCTTCTATCCGATTGG +
Preference number: 4 (lower is better)
Translates to: GLCTTTVWRRQLLRRRRVSSSSP*NLLSDW
Trigger: CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGA...GACGCGGCGGCGCCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCAGAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACGGACCCAGGAACCCTTaGACTTGGCTGAGCTACAGG +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNGPRNP*TWLSYR
Trigger: CCTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCC...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACAGTCCGGCGCTGGAATaGTGGGCTATAGCTCCGATA +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNSPALE*WAIAPI
Trigger: TATCGGAGCTATAGCCCATCATTCCAGCGCCGGACT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCTGGGGGCTGCTCCTaGGTTCTGAGGCCGCGGACT +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPGGCS*VLRPRT
Trigger: AGTCCGCGGCCTCAGAACTCAGGAGCAGCCCCCAGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCATCGTCGGTGCTGCTaGCCAGGCCCCGCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQHRRCC*PGPAPP
Trigger: GGGAGGCGCGGGGCCTGGGCAGCAGCACCGACGATG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCATCGTCGGTGCTGCTaGCCAGGCCCCGCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYHRRCC*PGPAPP
Trigger: GGGAGGCGCGGGGCCTGGGCAGCAGCACCGACGATG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTCTGGCTGCTGGACGATaGCGAGCCCGGTGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGLAAGR*RARWLR
Trigger: CCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAG...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGGCAGCGACTCCTGGCTaGTGGACGATGCCGAGCCCG +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVAATPG*WTMPSP
Trigger: CGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGC...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCTTCCTCCTTCAGGATaGAGTGCACGGCCGACTCGG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHLPPSG*SARPTR
Trigger: CCGAGTCGGCCGTGCACTGCATCCTGAAGGAGGAAG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCCATGGTGGACAGGGTaGAGTAGCCCGAGACGATGG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHPWWTG*SSPRRW
Trigger: CCATCGTCTCGGGCTACTCCACCCTGTCCACCATGG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCGATGCCGAGCCCGGTaGCTCCGGACCGCGGGGACA +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQRCRAR*LRTAGT
Trigger: TGTCCCCGCGGTCCGGAGCCACCGGGCTCGGCATCG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGCAGCTGAGCGGCGCTaGGGCAGACCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYAAERR*GRPCRA
Trigger: GGCCCTGCAGGGTCTGCCCCAGCGCCGCTCAGCTGC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCAGGTGGGCACGGGTaGCAGATGGGACACGGGACC +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPGGHG*QMGHGT
Trigger: GGTCCCGTGTCCCATCTGCCACCCGTGCCCACCTGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCATCCTCCAACCGGTCCTaGGAGGCACTGCGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPSSNRS*EALRAR
Trigger: CCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAGGA...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGCTCCAGGCGGTGCCGTaGGGAGGGTCCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKLQAVP*GGSSSS
Trigger: GGAGGAGGAGGACCCTCCCCACGGCACCGCCTGGAG...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TTGTGCGCCTCCTGCTCGGAGTCATCGTCGGTGCTGCTGCCCAGGCCCCGCGCCTGTCCTCATCATCACTaGAGAACCAGTCAGAATGCT +
Preference number: 4 (lower is better)
Translates to: LCASCSESSSVLLPRPRACPHHH*RTSQNA
Trigger: AGCATTCTGACTGGTTCTTCAGTGATGATGAGGACA...GGCGCGGGGCCTGGGCAGCAGCACCGACGATGACTCCGAGCAGGAGGCGCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTAGTAGGTCTTCCCAATaGTGCTCTCCCCATTCACCT +
Preference number: 4 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTSRSSQ*CSPHSP
Trigger: AGGTGAATGGGGAGAGCATCATTGGGAAGACCTACT...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCA +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPTAAL*ASCSES
Trigger: TGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCCCTCGGGTGGCTCCTaGGTCCCCACCGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQPSGGS*VPTAAL
Trigger: CAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCGTGGCTCAGCTCGCTaGGTTCGTCGTCCGCCTCGT +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVRGSAR*VRRPPR
Trigger: ACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGCAGCGACTCCTGGCTaGTGGACGATGCCGAGCCCG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKAATPG*WTMPSP
Trigger: CGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACAAGGTTCATCTGCCTTaGTGGGGTCAGCTGGACCTT +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNKVHLP*WGQLDL
Trigger: AAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGCAGCTGAGCGGCGCTaGGGCAGACCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEAAERR*GRPCRA
Trigger: GGCCCTGCAGGGTCTGCCCCAGCGCCGCTCAGCTGC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGAAAGGCACCAGGGCTTaGGCGGGGCTGGCTCATCCC +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVKGTRA*AGLAHP
Trigger: GGGATGAGCCAGCCCCGCCCAAGCCCTGGTGCCTTT...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCACTGCGGGCCCGGGGTaGCATGGCTGGGCACCGTCT +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVTAGPG*HGWAPS
Trigger: AGACGGTGCCCAGCCATGCCACCCCGGGCCCGCAGT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCCTCCTGGCCCAGCTaGCTCAAGGCATCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPSWPS*LKASWE
Trigger: CTCCCAGGATGCCTTGAGCCAGCTGGGCCAGGAGGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACTGGCTGAGCTACAGGTaGTGGAATCTGAGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNWLSYR*WNLSLD
Trigger: ATCCAGGCTCAGATTCCACCACCTGTAGCTCAGCCA...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCCCTGGGGGCTGCTCCTaGGTTCTGAGGCCGCGGACT +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVPGGCS*VLRPRT
Trigger: AGTCCGCGGCCTCAGAACTCAGGAGCAGCCCCCAGG...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCGGTAAATGCCAGTTaGTTCCAGCCCCCGGGCCTC +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPVNAS*FQPPGL
Trigger: GAGGCCCGGGGGCTGGAATCAACTGGCATTTACCGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGCCCTCGGGTGGCTCCTaGGTCCCCACCGCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEPSGGS*VPTAAL
Trigger: CAAGGCTGCGGTGGGGACGCAGGAGCCACCCGAGGG...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGGTCCTGGGAGGCACTaGGGGCCCGGGGTGGCATGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRGPGRH*GPGVAW
Trigger: CCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGTCTGAGCGAGCTCGGTaGCAACCCTCCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKSERAR*QPSWPS
Trigger: GCTGGGCCAGGAGGGTTGGCACCGAGCTCGCTCAGA...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCGACTCCTGGCTGCTaGACGATGCCGAGCCCGGTG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVATPGC*TMPSPV
Trigger: CACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGGCCGCAGCGACTCCTaGCTGCTGGACGATGCCGAG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVGRSDS*LLDDAE
Trigger: CTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGCC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCATGCACCACCACTGTGTaGCGGCGCCAGCTACTCCGG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPCTTTV*RRQLLR
Trigger: CCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGCAGCTGAGCGGCGCTaGGGCAGACCCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRAAERR*GRPCRA
Trigger: GGCCCTGCAGGGTCTGCCCCAGCGCCGCTCAGCTGC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGGGCTTGGGCGGGGCTaGCTCATCCCCAAGGAAGAG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKGLGRG*LIPKEE
Trigger: CTCTTCCTTGGGGATGAGCCAGCCCCGCCCAAGCCC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGGCACTCCAGTCTGCTaGGAAGCACCCGGCTGCCAG +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGGTPVC*EAPGCQ
Trigger: CTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGACTGCGGGCCCGGGGTaGCATGGCTGGGCACCGTCT +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLETAGPG*HGWAPS
Trigger: AGACGGTGCCCAGCCATGCCACCCCGGGCCCGCAGT...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAAGAGGTGCGGGCAGATaGGCGCTGGGAAGCCCAACC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPRGAGR*ALGSPT
Trigger: GGTTGGGCTTCCCAGCGCCCATCTGCCCGCACCTCT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACCGGACGACCCTAGGTaGTTCGGAGGCCTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPPDDPR*FGGLWW
Trigger: CCACCAGAGGCCTCCGAACCACCTAGGGTCGTCCGG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTCCAGGCGTTCCCCTCTaGCCTCGGGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGPGVPL*PRVLGT
Trigger: AGTCCCCAGAACCCGAGGCCAGAGGGGAACGCCTGG...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGAACGGCGGCCTGCCTTaGTGCTGCTGCAGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQNGGLP*CCCSPG
Trigger: CCCAGGACTGCAGCAGCATCAAGGCAGGCCGCCGTT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCCCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCA +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVPTAAL*ASCSES
Trigger: TGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGG...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCGTGGCTCAGCTCGCTaGGTTCGTCGTCCGCCTCGT +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQRGSAR*VRRPPR
Trigger: ACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGCTGGCTGCTGGACGATaGCGAGCCCGGTGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRLAAGR*RARWLR
Trigger: CCGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAG...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCTGGCACTCCAGTCTaGTGGGAAGCACCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVAGTPV*WEAPGC
Trigger: GCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACAAGGGCAAGCAGAGGTaGGGGCAGATGGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYKGKQR*GQMGAG
Trigger: CCCAGCGCCCATCTGCCCGCACCTCTGCTTGCCCTT...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGAAGGGCAAGCAGAGGTaGGGGCAGATGGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQKGKQR*GQMGAG
Trigger: CCCAGCGCCCATCTGCCCGCACCTCTGCTTGCCCTT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCGGAAGGAGAGGGCGTaGAAGAGACCAGTCCGGCGC +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQRKERA*KRPVRR
Trigger: GCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGTAGCCCGAGACGATaGAGCGCGTGTCCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVSSPRR*SACPPQ
Trigger: CTGCGGCGGACACGCGCTCCATCGTCTCGGGCTACT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGAGTAGCCCGAGACGATaGAGCGCGTGTCCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQSSPRR*SACPPQ
Trigger: CTGCGGCGGACACGCGCTCCATCGTCTCGGGCTACT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGTGGGACACGGGACCCTaGGTCACTCCAGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQWDTGP*VTPGSR
Trigger: CCTGCTGCCTGGAGTGACCCAGGGTCCCGTGTCCCA...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGAAAGGCACCAGGGCTTaGGCGGGGCTGGCTCATCCC +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQKGTRA*AGLAHP
Trigger: GGGATGAGCCAGCCCCGCCCAAGCCCTGGTGCCTTT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGCACTCCAGTCTGCTaGGAAGCACCCGGCTGCCAG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGTPVC*EAPGCQ
Trigger: CTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGGGCCCGGGGTGGCATaGCTGGGCACCGTCTCTCCC +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAGPGVA*LGTVSP
Trigger: GGGAGAGACGGTGCCCAGCCATGCCACCCCGGGCCC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCGGTGCCAACCCTCCTaGCCCAGCTGGCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYRCQPS*PSWLKA
Trigger: TGCCTTGAGCCAGCTGGGCCAGGAGGGTTGGCACCG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCCAGGCGTTCCCCTCTaGCCTCGGGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYPGVPL*PRVLGT
Trigger: AGTCCCCAGAACCCGAGGCCAGAGGGGAACGCCTGG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGAGTGGAGGTGGTTCTaGGATGCTGCGGGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKEWRWF*DAAGLS
Trigger: GGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQALCAS*SESSSV
Trigger: CACCGACGATGACTCCGAGCAGGAGGCGCACAAGGC...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCCTTGTGCGCCTCCTaGTCGGAGTCATCGTCGGTG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVALCAS*SESSSV
Trigger: CACCGACGATGACTCCGAGCAGGAGGCGCACAAGGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGAGACAGGCGACGGCGTaGCAGAGTGTCGCATGGCAT +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKRQATA*QSVAWH
Trigger: ATGCCATGCGACACTCTGGCACGCCGTCGCCTGTCT...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGTCGGTCAGCGGGCTCTaGACCACCACTGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLESVSGL*TTTVWR
Trigger: CCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGA...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCAGTGTGACAGAGCCTaGTGGCACTCCAGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVQCDRA*WHSSLL
Trigger: CAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGCCCGTTGGAGGCTTCTaGCTCAGGACCACCTCATCA +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVPVGGF*LRTTSS
Trigger: TGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGG...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACCATGGTGGACAGGGTaGAGTAGCCCGAGACGATGG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPPWWTG*SSPRRW
Trigger: CCATCGTCTCGGGCTACTCCACCCTGTCCACCATGG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYRYGPW*TGWSSP
Trigger: CGGGCTACTCCACCCTGTCCACCATGGACCGTAGCG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGGCCGCAGCGACTCCTaGCTGCTGGACGATGCCGAG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRGRSDS*LLDDAE
Trigger: CTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGCC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGAAGAGTTGTCCAGGTaGGCACGGGTGGCAGATGGG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKEELSR*ARVADG
Trigger: CCCATCTGCCACCCGTGCCCACCTGGACAACTCTTC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGGACTCTGAAGGGAGGTaGGGAAAGGCACCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVDSEGR*GKAPGL
Trigger: AAGCCCTGGTGCCTTTCCCCACCTCCCTTCAGAGTC...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGCGGTGCCAACCCTCCTaGCCCAGCTGGCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLERCQPS*PSWLKA
Trigger: TGCCTTGAGCCAGCTGGGCCAGGAGGGTTGGCACCG...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGCCGGACGACCCTAGGTaGTTCGGAGGCCTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEPDDPR*FGGLWW
Trigger: CCACCAGAGGCCTCCGAACCACCTAGGGTCGTCCGG...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCACGGCCGACTCGGGTaGGTACACGATGAAGTGGCG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYHGRLG*VHDEVA
Trigger: CGCCACTTCATCGTGTACCCACCCGAGTCGGCCGTG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCATTCTTCACAAAGATaGTGTCCATGGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHHSSQR*CPWAPG
Trigger: GCCTGGAGCCCATGGACACCATCTTTGTGAAGAATG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCCCCAGGCAGGGGCCCTaGTTGGTGGAGCATAGGTCT +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVPRQGP*LVEHRS
Trigger: AGACCTATGCTCCACCAACCAGGGCCCCTGCCTGGG...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
3UTR CAA 72 bp CTCCCCTCTCCTGAGGACTCCCACTTCGGTCTGGCTTaGATTTCTCTGCCCACCTCACCTAACTCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: LPSPEDSHFGLA*ISLPTSPNSSL
Trigger: CAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTGGGAGTCCTCAGGAGAGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
3UTR CAA 72 bp TCTGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTaGGGGCTAAGGTGCCTGTGTGCACCAAAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: SVEVASTQPLTN*GLRCLCAPKAG
Trigger: CCCTGCCTTTGGTGCACACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCTGGCATGAGATGGTGTaGGCTGAAGGATGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVWHEMV*AEGWPA
Trigger: CGCCGGCCATCCTTCAGCTCACACCATCTCATGCCA...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAGCTCTGCGGGGTATCTaGTTGGACAGCCAGTGTGAC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPALRGI*LDSQCD
Trigger: GTCACACTGGCTGTCCAATCAGATACCCCGCAGAGC...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGAGTCCGGCGCTGGAATaGTGGGCTATAGCTCCGATA +
Preference number: 4 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVSPALE*WAIAPI
Trigger: TATCGGAGCTATAGCCCATCATTCCAGCGCCGGACT...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGCCTCTGGTGGGAATaGTGCAGGAGACTGGGCCAA +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGLWWE*CRRLGQ
Trigger: TTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGAACGGCGGCCTGCCTTaGTGCTGCTGCAGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRNGGLP*CCCSPG
Trigger: CCCAGGACTGCAGCAGCATCAAGGCAGGCCGCCGTT...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGCTCATCCTGCAGGTTaGTGTCACTTGGCCCACGGT +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGAHPAG*CHLAHG
Trigger: ACCGTGGGCCAAGTGACATCAACCTGCAGGATGAGC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAAGTCATCGTCGGTGCTaGTGCCCAGGCCCCGCGCCT +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRASHRRC*CPGPAP
Trigger: AGGCGCGGGGCCTGGGCAGCAGCACCGACGATGACT...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGCAGTGTGACAGAGCCTaGTGGCACTCCAGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKQCDRA*WHSSLL
Trigger: CAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTG...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCTGCTCCTGGACCCAGTaGTTCAGCAGAGCGGGTAGC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVCSWTQ*FSRAGS
Trigger: GCTACCCGCTCTGCTGAAGCACTGGGTCCAGGAGCA...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCACGAGGGGACACCAGTaGTCCTGGACCCAGTGCTTC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVTRGHQ*SWTQCF
Trigger: GAAGCACTGGGTCCAGGAGCACTGGTGTCCCCTCGT...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGCGGAAGGAGAGGGCGTaGAAGAGACCAGTCCGGCGC +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRRKERA*KRPVRR
Trigger: GCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCG...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGGCCCACGGTTGAGCTaGTCCTGCAGGCTAGACACC +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEGPRLS*SCRLDT
Trigger: GGTGTCTAGCCTGCAGGAGCAGCTCAACCGTGGGCC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGTCCTTCAGGATGCAGTaGACGGCCGACTCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLESFRMQ*TADSGG
Trigger: CCCACCCGAGTCGGCCGTGCACTGCATCCTGAAGGA...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCCCATGGTGGACAGGGTaGAGTAGCCCGAGACGATGG +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVPWWTG*SSPRRW
Trigger: CCATCGTCTCGGGCTACTCCACCCTGTCCACCATGG...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGCGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLERYGPW*TGWSSP
Trigger: CGGGCTACTCCACCCTGTCCACCATGGACCGTAGCG...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGCGACTCCTGGCTGCTaGACGATGCCGAGCCCGGTG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAATPGC*TMPSPV
Trigger: CACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGTGCACCACCACTGTGTaGCGGCGCCAGCTACTCCGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRCTTTV*RRQLLR
Trigger: CCGGAGTAGCTGGCGCCGCCACACAGTGGTGGTGCA...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGTGGGACACGGGACCCTaGGTCACTCCAGGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRWDTGP*VTPGSR
Trigger: CCTGCTGCCTGGAGTGACCCAGGGTCCCGTGTCCCA...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGGTGGAGCAGGGCCATaGGTGGTGGGTAGTCACATC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVGGAGP*VVGSHI
Trigger: GATGTGACTACCCACCACCCATGGCCCTGCTCCACC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGTGGAGCAGGGCCATaGGTGGTGGGTAGTCACATC +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGGAGP*VVGSHI
Trigger: GATGTGACTACCCACCACCCATGGCCCTGCTCCACC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGACCTTGCGACCCGTTaGAGGCTTCTGCCTCAGGAC +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYDLATR*RLLPQD
Trigger: GTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGAAGGTTGGCGAGGATaGGCTAGTTCCCAGGACAGG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKEGWRG*ASSQDR
Trigger: CCTGTCCTGGGAACTAGCCCATCCTCGCCAACCTTC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGGACCCAGGAACCCTTaGACTTGGCTGAGCTACAGG +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGGPRNP*TWLSYR
Trigger: CCTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCAAAGATGGTGTCCATaGGCTCCAGGCGGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYQRWCP*APGGAV
Trigger: CACGGCACCGCCTGGAGCCCATGGACACCATCTTTG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGCCGGTAAATGCCAGTTaGTTCCAGCCCCCGGGCCTC +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRPVNAS*FQPPGL
Trigger: GAGGCCCGGGGGCTGGAATCAACTGGCATTTACCGG...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCTCATCCTGCAGGTTaGTGTCACTTGGCCCACGGT +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVAHPAG*CHLAHG
Trigger: ACCGTGGGCCAAGTGACATCAACCTGCAGGATGAGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCATCTTGTTCTTCTCTaGGTGGTCAGCAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHHLVLL*VVSNGL
Trigger: AAGACCATTGCTGACCACTCAGAGAAGAACAAGATG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACCCACCGCAGCCTTGTaGGCCTCCTGCTCGGAGTCA +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAPTAAL*ASCSES
Trigger: TGACTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACGTGGCTCAGCTCGCTaGGTTCGTCGTCCGCCTCGT +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRARGSAR*VRRPPR
Trigger: ACGAGGCGGACGACGAACGCAGCGAGCTGAGCCACG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCATCGGTCAGCGGGCTCTaGACCACCACTGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRASVSGL*TTTVWR
Trigger: CCGCCACACAGTGGTGGTGCAGAGCCCGCTGACCGA...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGCTGGCACTCCAGTCTaGTGGGAAGCACCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAAGTPV*WEAPGC
Trigger: GCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCATCTGAGCGAGCTCGGTaGCAACCCTCCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRASERAR*QPSWPS
Trigger: GCTGGGCCAGGAGGGTTGGCACCGAGCTCGCTCAGA...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCCCGTTGGAGGCTTCTaGCTCAGGACCACCTCATCA +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQPVGGF*LRTTSS
Trigger: TGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGATGACATTGAGGTCCTaGCAGCGCTCATCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKMTLRS*QRSSCR
Trigger: CCTGCAGGATGAGCGCTGGCAGGACCTCAATGTCAT...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGACACGCTACGGTCCATaGTGGACAGGGTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQTRYGP*WTGWSS
Trigger: GCTACTCCACCCTGTCCACCATGGACCGTAGCGTGT...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGAGCAGGGCCATGGGTaGTGGGTAGTCACATCCTCC +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEEQGHG*WVVTSS
Trigger: GGAGGATGTGACTACCCACCACCCATGGCCCTGCTC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCATCTGGCCTCGGGTTCTaGGGACTCATCACCAAATCC +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPSGLGF*GLITKS
Trigger: GGATTTGGTGATGAGTCCCCAGAACCCGAGGCCAGA...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACTCTTCATCCTCTCCCTaGAATCTTCTATCCGATTGG +
Preference number: 4 (lower is better)
Translates to: FLCPPHLTPACHTSAALHSSSSP*NLLSDW
Trigger: CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGA...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAGTTGGGCACCGACTGTaGCTCCTTGTCATCAACAGG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPVGHRL*LLVINR
Trigger: CCTGTTGATGACAAGGAGCCACAGTCGGTGCCCAAC...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGTTGGGCACCGACTGTaGCTCCTTGTCATCAACAGG +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGVGHRL*LLVINR
Trigger: CCTGTTGATGACAAGGAGCCACAGTCGGTGCCCAAC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGCTCTGCGGGGTATCTaGTTGGACAGCCAGTGTGAC +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEALRGI*LDSQCD
Trigger: GTCACACTGGCTGTCCAATCAGATACCCCGCAGAGC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGCTCAGGTAATCGTCTaGGCGAGCTCGGTGCCAACC +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRAQVIV*ASSVPT
Trigger: GGTTGGCACCGAGCTCGCTCAGACGATTACCTGAGC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGAAACCAAAGCCATCCTaGAGACTCTTGCGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKKPKPS*RLLRSS
Trigger: GCTGCTGCGCAAGAGTCTTCAGGATGGCTTTGGTTT...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGTCTGGATCAGACCTATaGCCTGGGAGTAGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKSGSDL*PGSRSS
Trigger: GGAAGACCTACTCCCAGGTCATAGGTCTGATCCAGA...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCAAAGGTTCATCTGCCTTaGTGGGGTCAGCTGGACCTT +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPKVHLP*WGQLDL
Trigger: AAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTT...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACCGCGGACTGCAGTCTaGTTGAGGAATTCAGACTTG +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPPRTAV*LRNSDL
Trigger: CAAGTCTGAATTCCTCAAGCAGACTGCAGTCCGCGG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACATGACATTGAGGTCCTaGCAGCGCTCATCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYMTLRS*QRSSCR
Trigger: CCTGCAGGATGAGCGCTGGCAGGACCTCAATGTCAT...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACGCTACGGTCCATGGTaGACAGGGTGGAGTAGCCCG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRARYGPW*TGWSSP
Trigger: CGGGCTACTCCACCCTGTCCACCATGGACCGTAGCG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGAAGAGTTGTCCAGGTaGGCACGGGTGGCAGATGGG +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPREELSR*ARVADG
Trigger: CCCATCTGCCACCCGTGCCCACCTGGACAACTCTTC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGAGCAGGGCCATGGGTaGTGGGTAGTCACATCCTCC +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPREQGHG*WVVTSS
Trigger: GGAGGATGTGACTACCCACCACCCATGGCCCTGCTC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCTCTGGCCTCGGGTTCTaGGGACTCATCACCAAATCC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVSGLGF*GLITKS
Trigger: GGATTTGGTGATGAGTCCCCAGAACCCGAGGCCAGA...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCATGGCTGAGCTACAGGTaGTGGAATCTGAGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPWLSYR*WNLSLD
Trigger: ATCCAGGCTCAGATTCCACCACCTGTAGCTCAGCCA...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGGCCTCTGGTGGGAATaGTGCAGGAGACTGGGCCAA +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAGLWWE*CRRLGQ
Trigger: TTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR GCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCCGCGGACTGCAGTCTaGTTGAGGAATTCAGACTTG +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYPRTAV*LRNSDL
Trigger: CAAGTCTGAATTCCTCAAGCAGACTGCAGTCCGCGG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACAGAATACGGCTCGTTaGCCTTTAGGTAGGCATCCT +
Preference number: 4 (lower is better)
Translates to: HFGLALISLPTSPNSSLPQNTAR*PLGRHP
Trigger: AGGATGCCTACCTAAAGGGCAACGAGCCGTATTCTG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGACCTTGCGACCCGTTaGAGGCTTCTGCCTCAGGAC +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRADLATR*RLLPQD
Trigger: GTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACCTGAGCTACAGGTGGTaGAATCTGAGCCTGGATCAC +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYLSYRW*NLSLDH
Trigger: GTGATCCAGGCTCAGATTCCACCACCTGTAGCTCAG...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCCTGAGCTACAGGTGGTaGAATCTGAGCCTGGATCAC +
Preference number: 4 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVLSYRW*NLSLDH
Trigger: GTGATCCAGGCTCAGATTCCACCACCTGTAGCTCAG...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGGGTACACGATGAAGTaGCGCAGGGTGAAACCAAAG +
Preference number: 4 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQGYTMK*RRVKPK
Trigger: CTTTGGTTTCACCCTGCGCCACTTCATCGTGTACCC...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGCCGTGGGTAGCAGAGTaGAGGTGGTTCTGGGATGCT +
Preference number: 4 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRPWVAE*RWFWDA
Trigger: AGCATCCCAGAACCACCTCCACTCTGCTACCCACGG...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGCTCATCCTGCAGGTTaGTGTCACTTGGCCCACGGT +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAAHPAG*CHLAHG
Trigger: ACCGTGGGCCAAGTGACATCAACCTGCAGGATGAGC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGAATCCAAGGTTCATCTaGCTTGCTGGGGTCAGCTGG +
Preference number: 4 (lower is better)
Translates to: KMPAVRGSRQIHRSESLENPRFI*LAGVSW
Trigger: CCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATT...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAACACGCTACGGTCCATaGTGGACAGGGTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRATRYGP*WTGWSS
Trigger: GCTACTCCACCCTGTCCACCATGGACCGTAGCGTGT...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAGAAGGTTGGCGAGGATaGGCTAGTTCCCAGGACAGG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAEGWRG*ASSQDR
Trigger: CCTGTCCTGGGAACTAGCCCATCCTCGCCAACCTTC...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTGTATTTGTCATCAGTaGAAAGAGGCTCCGGCAGCT +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYCICHQ*KEAPAA
Trigger: AGCTGCCGGAGCCTCTTTTCACTGATGACAAATACA...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR TCA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGCATCTTGTTCTTCTCTaGGTGGTCAGCAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: SPAETLYISAGQSSSRLKHLVLL*VVSNGL
Trigger: AAGACCATTGCTGACCACTCAGAGAAGAACAAGATG...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTTCTTCATCCTCTCCCTaGAATCTTCTATCCGATTGG +
Preference number: 4 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGSSSSP*NLLSDW
Trigger: CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGA...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACGTAAGGCTCTTTCTTaGGGACCCAGGAACCCTTGG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRARKALS*GPRNPW
Trigger: CCAAGGGTTCCTGGGTCCCCAAGAAAGAGCCTTACG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTGTCCTCATCATCACTaGAGAACCAGTCAGAATGCT +
Preference number: 4 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYCPHHH*RTSQNA
Trigger: AGCATTCTGACTGGTTCTTCAGTGATGATGAGGACA...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR GCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCAAATCCAAGGTTCATCTaGCTTGCTGGGGTCAGCTGG +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRANPRFI*LAGVSW
Trigger: CCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATT...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR TCA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACATCTTGTTCTTCTCTaGGTGGTCAGCAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: YSKSLHKPERLTDLGSRAHLVLL*VVSNGL
Trigger: AAGACCATTGCTGACCACTCAGAGAAGAACAAGATG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp CCGGGGGCCGCAGCGACTCCTGGCTGCTGGACGATGCCGAGCCCGGTGGCTCCGGCAACACTGTCTTCCTaGCTTCCTGGGGGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PGAAATPGCWTMPSPVAPATLSS*LPGGCS
Trigger: GGAGCAGCCCCCAGGAAGCAAGGAAGACAGTGTTGC...CGGAGCCACCGGGCTCGGCATCGTCCAGCAGCCAGGAGTCGCTGCGGCCCCCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS CCA 90 bp GAGCAGGGCCATGGGTGGTGGGTAGTCACATCCTCCAACCGGTCCTaGGAGGCACTGCGGGCCCGGGGTGGCATGGCTGGGCACCGTCTC +
Preference number: 5 (lower is better)
Translates to: EQGHGWWVVTSSNRS*EALRARGGMAGHRL
Trigger: GAGACGGTGCCCAGCCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAGGATGTGACTACCCACCACCCATGGCCCTGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACGTCCCCACCGCAGCCTaGTGCGCCTCCTGCTCGGAG +
Preference number: 5 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNVPTAA*CASCSE
Trigger: CTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGAC...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GGGCTTGGGCGGGGCTGGCTCATCCCCAAGGAAGAGTTGTCCAGGTaGGCACGGGTGGCAGATGGGACACGGGACCCTGGGTCACTCCAG +
Preference number: 5 (lower is better)
Translates to: GLGRGWLIPKEELSR*ARVADGTRDPGSLQ
Trigger: CTGGAGTGACCCAGGGTCCCGTGTCCCATCTGCCACCCGTGCCCACCTGGACAACTCTTCCTTGGGGATGAGCCAGCCCCGCCCAAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp GTGACAGAGCCTGCTGGCACTCCAGTCTGCTGGGAAGCACCCGGCTaGCAGGCTCTGGGAAGGCACGGGGTGTCCGGGACTCTGAAGGGA +
Preference number: 5 (lower is better)
Translates to: VTEPAGTPVCWEAPG*QALGRHGVSGTLKG
Trigger: TCCCTTCAGAGTCCCGGACACCCCGTGCCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GCTCATCCCCAAGGAAGAGTTGTCCAGGTGGGCACGGGTGGCAGATaGGACACGGGACCCTGGGTCACTCCAGGCAGCAGGACTCCGGGG +
Preference number: 5 (lower is better)
Translates to: AHPQGRVVQVGTGGR*DTGPWVTPGSRTPG
Trigger: CCCCGGAGTCCTGCTGCCTGGAGTGACCCAGGGTCCCGTGTCCCATCTGCCACCCGTGCCCACCTGGACAACTCTTCCTTGGGGATGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp GGCGCCGCAGCCGCACGGCCAGCATGTCGTCGGCGGTGCCACGGAGACGTAGCCTTGCGGAAGAAAGCCTaGAGCAGGCTGCTGATGACA +
Preference number: 5 (lower is better)
Translates to: GAAAARPACRRRCHGDVALRKKA*SRLLMT
Trigger: TGTCATCAGCAGCCTGCTCAAGGCTTTCTTCCGCAA...GGCTACGTCTCCGTGGCACCGCCGACGACATGCTGGCCGTGCGGCTGCGGCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS TCA 90 bp ACCCAGTGCTTCAGCAGAGCGGGTAGCCCGGCTCAGGTAATCGTCTaGGCGAGCTCGGTGCCAACCCTCCTGGCCCAGCTGGCTCAAGGC +
Preference number: 5 (lower is better)
Translates to: TQCFSRAGSPAQVIV*ASSVPTLLAQLAQG
Trigger: GCCTTGAGCCAGCTGGGCCAGGAGGGTTGGCACCGAGCTCGCTCAGACGATTACCTGAGCCGGGCTACCCGCTCTGCTGAAGCACTGGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp GCGCTGGGAAGCCCAACCACAGCGTTCAAGACGAGGGGACACCAGTaGTCCTGGACCCAGTGCTTCAGCAGAGCGGGTAGCCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: ALGSPTTAFKTRGHQ*SWTQCFSRAGSPAQ
Trigger: CTGAGCCGGGCTACCCGCTCTGCTGAAGCACTGGGTCCAGGAGCACTGGTGTCCCCTCGTCTTGAACGCTGTGGTTGGGCTTCCCAGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GATTGGACAGCCAGTGTGACAGAGCCTGCTGGCACTCCAGTCTGCTaGGAAGCACCCGGCTGCCAGGCTCTGGGAAGGCACGGGGTGTCC +
Preference number: 5 (lower is better)
Translates to: DWTASVTEPAGTPVC*EAPGCQALGRHGVS
Trigger: GGACACCCCGTGCCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGCTGTCCAATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTGGGACCCAGGAACCCTaGGACTTGGCTGAGCTACAG +
Preference number: 5 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTGTQEP*DLAELQ
Trigger: CTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCCC...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 90 bp TGCAGGAGACTGGGCCAAGCTGAAGGTGGGAAGTCCCCCAAAGGGTaGGTCCCGGAAGGAGAGGGCGTGCAAGAGACCAGTCCGGCGCTG +
Preference number: 5 (lower is better)
Translates to: CRRLGQAEGGKSPKG*VPEGEGVQETSPAL
Trigger: CAGCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCGGGACTCACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp TCTGATTGGACAGCCAGTGTGACAGAGCCTGCTGGCACTCCAGTCTaGTGGGAAGCACCCGGCTGCCAGGCTCTGGGAAGGCACGGGGTG +
Preference number: 5 (lower is better)
Translates to: SDWTASVTEPAGTPV*WEAPGCQALGRHGV
Trigger: CACCCCGTGCCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGCTGTCCAATCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GCATGGCTGGGCACCGTCTCTCCCCCGCTCTGCGGGGTATCTGATTaGACAGCCAGTGTGACAGAGCCTGCTGGCACTCCAGTCTGCTGG +
Preference number: 5 (lower is better)
Translates to: AWLGTVSPPLCGVSD*TASVTEPAGTPVCW
Trigger: CCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGCTGTCCAATCAGATACCCCGCAGAGCGGGGGAGAGACGGTGCCCAGCCATGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GGGCGGGGCCACCATCCTTCACATTCTTCACAAAGATGGTGTCCATaGGCTCCAGGCGGTGCCGTGGGGAGGGTCCTCCTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: GRGHHPSHSSQRWCP*APGGAVGRVLLLLL
Trigger: GAGGAGGAGGAGGAGGACCCTCCCCACGGCACCGCCTGGAGCCCATGGACACCATCTTTGTGAAGAATGTGAAGGATGGTGGCCCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 90 bp AGTAGCCCAGGCAGGGGCCCTGGTTGGTGGAGCATAGGTCTTCCGTaGGTAGCAGAGTGGAGGTGGTTCTGGGATGCTGCGGGCCTCTCC +
Preference number: 5 (lower is better)
Translates to: SSPGRGPGWWSIGLP*VAEWRWFWDAAGLS
Trigger: GGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATGCTCCACCAACCAGGGCCCCTGCCTGGGCTACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CAGCCCCGGAACAGGGGAGGGTATCACAGACACTGGTGGAGGCGGGCGGCAGCTTTGAGGAATTCAGACTaGAGGCCTCCCAGGCCCCGA +
Preference number: 5 (lower is better)
Translates to: QPRNRGGYHRHWWRRAAALRNSD*RPPRPR
Trigger: TCGGGGCCTGGGAGGCCTCAAGTCTGAATTCCTCAA...AGCTGCCGCCCGCCTCCACCAGTGTCTGTGATACCCTCCCCTGTTCCGGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCGCTCATCCTGCAGGTaGATGTCACTTGGCCCACGG +
Preference number: 5 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNRSSCR*MSLGPR
Trigger: CCGTGGGCCAAGTGACATCAACCTGCAGGATGAGCG...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTAGCTCCTTCCACTCGTaGAAGTTGAGGTCGGTCAGC +
Preference number: 5 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTSSFHS*KLRSVS
Trigger: GCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCT...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 90 bp GTTCGGAGGCCTCTGGTGGGAATGATGCAGGAGACTGGGCCAAGCTaGAGGTGGGAAGTCCCCCAAAGGGTGAGTCCCGGAAGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: VRRPLVGMMQETGPS*RWEVPQRVSPGRRG
Trigger: CCCTCTCCTTCCGGGACTCACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 90 bp TTGCGACCCGTTGGAGGCTTCTGCCTCAGGACCACCTCATCACGATaGTCCTCTGCGGGAGGCTCTAGGGCTCGGGTGCTAGGATCTGGC +
Preference number: 5 (lower is better)
Translates to: LRPVGGFCLRTTSSR*SSAGGSRARVLGSG
Trigger: GCCAGATCCTAGCACCCGAGCCCTAGAGCCTCCCGCAGAGGATCATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp ACCCTAGGTGGTTCGGAGGCCTCTGGTGGGAATGATGCAGGAGACTaGGCCAAGCTGAAGGTGGGAAGTCCCCCAAAGGGTGAGTCCCGG +
Preference number: 5 (lower is better)
Translates to: TLGGSEASGGNDAGD*AKLKVGSPPKGESR
Trigger: CCGGGACTCACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAACCACCTAGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp AGGGGCCCTGGTTGGTGGAGCATAGGTCTTCCGTGGGTAGCAGAGTaGAGGTGGTTCTGGGATGCTGCGGGCCTCTCCAGAATACGGCTC +
Preference number: 5 (lower is better)
Translates to: RGPGWWSIGLPWVAE*RWFWDAAGLSRIRL
Trigger: GAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATGCTCCACCAACCAGGGCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTTTCTTCCGTTTGCGGTaGACCGCAGAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTFFRLR*TAEMKE
Trigger: CTCCTTCATCTCTGCGGTCAACCGCAAACGGAAGAA...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGTCCCCACCGCAGCCTaGTGCGCCTCCTGCTCGGAG +
Preference number: 5 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGVPTAA*CASCSE
Trigger: CTCCGAGCAGGAGGCGCACAAGGCTGCGGTGGGGAC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACAGCTCCTTCCACTCGTaGAAGTTGAGGTCGGTCAGC +
Preference number: 5 (lower is better)
Translates to: SPNSSLPHQRRPSHPTPNSSFHS*KLRSVS
Trigger: GCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCT...GTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGGAAAGGCACCAGGGCTaGGGCGGGGCTGGCTCATCC +
Preference number: 5 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVERHQG*GGAGSS
Trigger: GGATGAGCCAGCCCCGCCCAAGCCCTGGTGCCTTTC...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp GCCTGCCACACCAGCGCCGCCCTTCACACCCCACCCCCAACCTTCTGCAGCACTTTGCGGAAGAAAGCCTaGAGCAGGCTGCTGATGACA +
Preference number: 5 (lower is better)
Translates to: ACHTSAALHTPPPTFCSTLRKKA*SRLLMT
Trigger: TGTCATCAGCAGCCTGCTCAAGGCTTTCTTCCGCAA...AGTGCTGCAGAAGGTTGGGGGTGGGGTGTGAAGGGCGGCGCTGGTGTGGCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS TCA 90 bp ATCTGGCCGGACGACCCTAGGTGGTTCGGAGGCCTCTGGTGGGAATaGTGCAGGAGACTGGGCCAAGCTGAAGGTGGGAAGTCCCCCAAA +
Preference number: 5 (lower is better)
Translates to: IWPDDPRWFGGLWWE*CRRLGQAEGGKSPK
Trigger: TTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAACCACCTAGGGTCGTCCGGCCAGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp CACATTCTTCACAAAGATGGTGTCCATGGGCTCCAGGCGGTGCCGTaGGGAGGGTCCTCCTCCTCCTCCTCTTCCTCCTCGGCCTCCATT +
Preference number: 5 (lower is better)
Translates to: HILHKDGVHGLQAVP*GGSSSSSSSSSASI
Trigger: AATGGAGGCCGAGGAGGAAGAGGAGGAGGAGGAGGACCCTCCCCACGGCACCGCCTGGAGCCCATGGACACCATCTTTGTGAAGAATGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 90 bp CCTGGTTGGTGGAGCATAGGTCTTCCGTGGGTAGCAGAGTGGAGGTaGTTCTGGGATGCTGCGGGCCTCTCCAGAATACGGCTCGTTGCC +
Preference number: 5 (lower is better)
Translates to: PGWWSIGLPWVAEWR*FWDAAGLSRIRLVA
Trigger: GGCAACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATGCTCCACCAACCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGAAAGGCACCAGGGCTaGGGCGGGGCTGGCTCATCC +
Preference number: 5 (lower is better)
Translates to: SPAETLYISAGQSSSRLKERHQG*GGAGSS
Trigger: GGATGAGCCAGCCCCGCCCAAGCCCTGGTGCCTTTC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACCAAGGTTCATCTGCCTaGCTGGGGTCAGCTGGACCT +
Preference number: 5 (lower is better)
Translates to: FLCPPHLTPACHTSAALHQGSSA*LGSAGP
Trigger: AGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTG...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp AGAGTGTCGCATGGCATGAGATGGTGTGAGCTGAAGGATGGCCGGCGCGACAGGCGCTCATCCTGCAGGTaGATGTCACTTGGCCCACGG +
Preference number: 5 (lower is better)
Translates to: RVSHGMRWCELKDGRRDRRSSCR*MSLGPR
Trigger: CCGTGGGCCAAGTGACATCAACCTGCAGGATGAGCG...CCTGTCGCGCCGGCCATCCTTCAGCTCACACCATCTCATGCCATGCGACACTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142465.8
CDS GCA 90 bp CTGGCCTCGGGTTCTGGGGACTCATCACCAAATCCAAGGTTCATCTaGCTTGCTGGGGTCAGCTGGACCTTGCGACCCGTTGGAGGCTTC +
Preference number: 5 (lower is better)
Translates to: LASGSGDSSPNPRFI*LAGVSWTLRPVGGF
Trigger: GAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCCCCAGAACCCGAGGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp CTCGGGTTCTGGGGACTCATCACCAAATCCAAGGTTCATCTGCCTTaGTGGGGTCAGCTGGACCTTGCGACCCGTTGGAGGCTTCTGCCT +
Preference number: 5 (lower is better)
Translates to: LGFWGLITKSKVHLP*WGQLDLATRWRLLP
Trigger: AGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCCCCAGAACCCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp AAGGTTCATCTGCCTTGCTGGGGTCAGCTGGACCTTGCGACCCGTTaGAGGCTTCTGCCTCAGGACCACCTCATCACGATGATCCTCTGC +
Preference number: 5 (lower is better)
Translates to: KVHLPCWGQLDLATR*RLLPQDHLITMILC
Trigger: GCAGAGGATCATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp GGGTTCTGGGGACTCATCACCAAATCCAAGGTTCATCTGCCTTGCTaGGGTCAGCTGGACCTTGCGACCCGTTGGAGGCTTCTGCCTCAG +
Preference number: 5 (lower is better)
Translates to: GFWGLITKSKVHLPC*GQLDLATRWRLLPQ
Trigger: CTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCCCCAGAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACACCAGCGCCGCCCTTCACTTCTTCCGTTTGCGGTaGACCGCAGAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: FLCPPHLTPACHTSAALHFFRLR*TAEMKE
Trigger: CTCCTTCATCTCTGCGGTCAACCGCAAACGGAAGAA...GTGAAGGGCGGCGCTGGTGTGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGGGTCAGCTGGACCTaGCGACCCGTTGGAGGCTTC +
Preference number: 5 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGVSWT*RPVGGF
Trigger: GAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 90 bp GTCCCGGAAGGAGAGGGCGTGCAAGAGACCAGTCCGGCGCTGGAATaGTGGGCTATAGCTCCGATATCCAATGTACCCGATGTCATCCAG +
Preference number: 5 (lower is better)
Translates to: VPEGEGVQETSPALE*WAIAPISNVPDVIQ
Trigger: CTGGATGACATCGGGTACATTGGATATCGGAGCTATAGCCCATCATTCCAGCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp CACCAAATCCAAGGTTCATCTGCCTTGCTGGGGTCAGCTGGACCTTaGGACCCGTTGGAGGCTTCTGCCTCAGGACCACCTCATCACGAT +
Preference number: 5 (lower is better)
Translates to: HQIQGSSALLGSAGP*DPLEASASGPPHHD
Trigger: ATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 90 bp CATAGGTCTTCCGTGGGTAGCAGAGTGGAGGTGGTTCTGGGATGCTaGGGGCCTCTCCAGAATACGGCTCGTTGCCCTTTAGGTAGGCAT +
Preference number: 5 (lower is better)
Translates to: HRSSVGSRVEVVLGC*GPLQNTARCPLGRH
Trigger: ATGCCTACCTAAAGGGCAACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 90 bp GACTCATCACCAAATCCAAGGTTCATCTGCCTTGCTGGGGTCAGCTaGACCTTGCGACCCGTTGGAGGCTTCTGCCTCAGGACCACCTCA +
Preference number: 5 (lower is better)
Translates to: DSSPNPRFICLAGVS*TLRPVGGFCLRTTS
Trigger: TGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 90 bp TCCATTCTCTTCCTCCTTCAGGATGCAGTGCACGGCCGACTCGGGTaGGTACACGATGAAGTGGCGCAGGGTGAAACCAAAGCCATCCTG +
Preference number: 5 (lower is better)
Translates to: SILFLLQDAVHGRLG*VHDEVAQGETKAIL
Trigger: CAGGATGGCTTTGGTTTCACCCTGCGCCACTTCATCGTGTACCCACCCGAGTCGGCCGTGCACTGCATCCTGAAGGAGGAAGAGAATGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTATCCCCAAGGAAGAGTaGTCCAGGTGGGCACGGGTG +
Preference number: 5 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGIPKEE*SRWARV
Trigger: CACCCGTGCCCACCTGGACAACTCTTCCTTGGGGAT...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGGACCTTGCGACCCGTaGGAGGCTTCTGCCTCAGGA +
Preference number: 5 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVGPCDP*EASASG
Trigger: TCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGGACCTTGCGACCCGTaGGAGGCTTCTGCCTCAGGA +
Preference number: 5 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYGPCDP*EASASG
Trigger: TCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTCGCTCATCCTGCAGGTaGATGTCACTTGGCCCACGG +
Preference number: 5 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGRSSCR*MSLGPR
Trigger: CCGTGGGCCAAGTGACATCAACCTGCAGGATGAGCG...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGCGCCGCTTCTTCCGTTaGCGGTTGACCGCAGAGATG +
Preference number: 5 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQRRFFR*RLTAEM
Trigger: CATCTCTGCGGTCAACCGCAAACGGAAGAAGCGGCG...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTTTCCACTCGTTGAAGTaGAGGTCGGTCAGCGGGCTC +
Preference number: 5 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGFHSLK*RSVSGL
Trigger: GAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAA...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TGTGGAAGTGGCCTCAACCCAGCCTCTGACAAACTTGGGGCTAAGGTGCCTGTGAGCTCCTTCCACTCGTaGAAGTTGAGGTCGGTCAGC +
Preference number: 5 (lower is better)
Translates to: CGSGLNPASDKLGAKVPVSSFHS*KLRSVS
Trigger: GCTGACCGACCTCAACTTCAACGAGTGGAAGGAGCT...CACAGGCACCTTAGCCCCAAGTTTGTCAGAGGCTGGGTTGAGGCCACTTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CACTTCGGTCTGGCTTTGATTTCTCTGCCCACCTCACCTAACTCCAGCCTGCCACAAGGTTCATCTGCCTaGCTGGGGTCAGCTGGACCT +
Preference number: 5 (lower is better)
Translates to: HFGLALISLPTSPNSSLPQGSSA*LGSAGP
Trigger: AGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTG...TGGCAGGCTGGAGTTAGGTGAGGTGGGCAGAGAAATCAAAGCCAGACCGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACGCAACACTGTCTTCCTaGCTTCCTGGGGGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYATLSS*LPGGCS
Trigger: GGAGCAGCCCCCAGGAAGCAAGGAAGACAGTGTTGC...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCAACACTGTCTTCCTaGCTTCCTGGGGGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVATLSS*LPGGCS
Trigger: GGAGCAGCCCCCAGGAAGCAAGGAAGACAGTGTTGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTTCCACTCGTTGAAGTaGAGGTCGGTCAGCGGGCTC +
Preference number: 5 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYFHSLK*RSVSGL
Trigger: GAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAA...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGATCCCCAAGGAAGAGTaGTCCAGGTGGGCACGGGTG +
Preference number: 5 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRIPKEE*SRWARV
Trigger: CACCCGTGCCCACCTGGACAACTCTTCCTTGGGGAT...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGTTGAGGAATTCAGACTaGAGGCCTCCCAGGCCCCGA +
Preference number: 5 (lower is better)
Translates to: KMPAVRGSRQIHRSESLELRNSD*RPPRPR
Trigger: TCGGGGCCTGGGAGGCCTCAAGTCTGAATTCCTCAA...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGGGGACCCAGGAACCCTaGGACTTGGCTGAGCTACAG +
Preference number: 5 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRGTQEP*DLAELQ
Trigger: CTGTAGCTCAGCCAAGTCCAAGGGTTCCTGGGTCCC...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CCACACTGCATGGGTCACCAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTTCTTCCGTTTGCGGTaGACCGCAGAGATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: PHCMGHQGSLSRLTEKGYFFRLR*TAEMKE
Trigger: CTCCTTCATCTCTGCGGTCAACCGCAAACGGAAGAA...GTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTGGTGACCCATGCAGTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCACGCCGCTTCTTCCGTTaGCGGTTGACCGCAGAGATG +
Preference number: 5 (lower is better)
Translates to: YSKSLHKPERLTDLGSRARRFFR*RLTAEM
Trigger: CATCTCTGCGGTCAACCGCAAACGGAAGAAGCGGCG...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGTTCCACTCGTTGAAGTaGAGGTCGGTCAGCGGGCTC +
Preference number: 5 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRFHSLK*RSVSGL
Trigger: GAGCCCGCTGACCGACCTCAACTTCAACGAGTGGAA...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093940.4
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGTTGAGGAATTCAGACTaGAGGCCTCCCAGGCCCCGA +
Preference number: 5 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRLRNSD*RPPRPR
Trigger: TCGGGGCCTGGGAGGCCTCAAGTCTGAATTCCTCAA...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp CAAGGGTCCCTAAGTAGACTCACAGAAAAGGGCTACTCGGTTCTTCATCCAAGGAGGATGTCCTCGTCCTaGGGCATGATAGAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: QGSLSRLTEKGYSVLHPRRMSSS*GMIESS
Trigger: GGAGCTCTCTATCATGCCCAAGGACGAGGACATCCT...CCTTGGATGAAGAACCGAGTAGCCCTTTTCTGTGAGTCTACTTAGGGACCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS-3UTR CAA 90 bp TCCTTCTGTATGAAACTTGGGCGGTCCACCCACACTGCATGGGTCACCAAGGGTGAATCTTCTATCCGATaGGCCTCGATGAAGTCATTG +
Preference number: 5 (lower is better)
Translates to: SFCMKLGRSTHTAWVTKGESSIR*ASMKSL
Trigger: CAATGACTTCATCGAGGCCAATCGGATAGAAGATTC...ACCCTTGGTGACCCATGCAGTGTGGGTGGACCGCCCAAGTTTCATACAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp AGCCCAGCTGAGACTCTATACATCAGTGCCGGACAGAGTTCCTCCCGACTGAAGGAATCTTCTATCCGATaGGCCTCGATGAAGTCATTG +
Preference number: 5 (lower is better)
Translates to: SPAETLYISAGQSSSRLKESSIR*ASMKSL
Trigger: CAATGACTTCATCGAGGCCAATCGGATAGAAGATTC...CTTCAGTCGGGAGGAACTCTGTCCGGCACTGATGTATAGAGTCTCAGCTGGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp TACAGCAAATCTTTGCATAAACCCGAAAGACTGACAGACCTGGGCAGCAGAGCATTGCGGAAGAAAGCCTaGAGCAGGCTGCTGATGACA +
Preference number: 5 (lower is better)
Translates to: YSKSLHKPERLTDLGSRALRKKA*SRLLMT
Trigger: TGTCATCAGCAGCCTGCTCAAGGCTTTCTTCCGCAA...TGCTCTGCTGCCCAGGTCTGTCAGTCTTTCGGGTTTATGCAAAGATTTGCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp AACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCGCCTCGATGAAGTCATaGTATTTGTCATCAGTGAAA +
Preference number: 5 (lower is better)
Translates to: NMEEEDASCKGIQTDPQVASMKS*YLSSVK
Trigger: TTTCACTGATGACAAATACAATGACTTCATCGAGGC...GACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp GTGAACATGGAGGAGGAAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGCCTCGATGAAGTCATaGTATTTGTCATCAGTGAAA +
Preference number: 5 (lower is better)
Translates to: VNMEEEDASCKGIQTDPQASMKS*YLSSVK
Trigger: TTTCACTGATGACAAATACAATGACTTCATCGAGGC...CTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTTCCTCCTCCATGTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS-3UTR CAA 90 bp AAGATGCCAGCTGTAAGGGGATCCAGACAGATCCACAGGTCAGAGAGCTTAGAGGCCTCGATGAAGTCATaGTATTTGTCATCAGTGAAA +
Preference number: 5 (lower is better)
Translates to: KMPAVRGSRQIHRSESLEASMKS*YLSSVK
Trigger: TTTCACTGATGACAAATACAATGACTTCATCGAGGC...CTCTAAGCTCTCTGACCTGTGGATCTGTCTGGATCCCCTTACAGCTGGCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS CCA 72 bp CTCCAACCGGTCCTGGGAGGCACTGCGGGCCCGGGGTaGCATGGCTGGGCACCGTCTCTCCCCCGCTCTGCG +
Preference number: 6 (lower is better)
Translates to: LQPVLGGTAGPG*HGWAPSLPRSA
Trigger: CGCAGAGCGGGGGAGAGACGGTGCCCAGCCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp AGAAGCTCCGCAGCACTCGTAGGCTGGGCACCCGGCTaGGAAGGCGCCGGAGCACTCGGCCCTCATCCCGGA +
Preference number: 6 (lower is better)
Translates to: RSSAALVGWAPG*EGAGALGPHPG
Trigger: TCCGGGATGAGGGCCGAGTGCTCCGGCGCCTTCCCAGCCGGGTGCCCAGCCTACGAGTGCTGCGGAGCTTCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS GCA 72 bp CCTGCTGGCACTCCAGTCTGCTGGGAAGCACCCGGCTaGCAGGCTCTGGGAAGGCACGGGGTGTCCGGGACT +
Preference number: 6 (lower is better)
Translates to: PAGTPVCWEAPG*QALGRHGVSGT
Trigger: AGTCCCGGACACCCCGTGCCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp CATGGGTGGTGGGTAGTCACATCCTCCAACCGGTCCTaGGAGGCACTGCGGGCCCGGGGTGGCATGGCTGGG +
Preference number: 6 (lower is better)
Translates to: HGWWVVTSSNRS*EALRARGGMAG
Trigger: CCCAGCCATGCCACCCCGGGCCCGCAGTGCCTCCCAGGACCGGTTGGAGGATGTGACTACCCACCACCCATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp GCCAGTGTGACAGAGCCTGCTGGCACTCCAGTCTGCTaGGAAGCACCCGGCTGCCAGGCTCTGGGAAGGCAC +
Preference number: 6 (lower is better)
Translates to: ASVTEPAGTPVC*EAPGCQALGRH
Trigger: GTGCCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 72 bp TTCAGCAGAGCGGGTAGCCCGGCTCAGGTAATCGTCTaGGCGAGCTCGGTGCCAACCCTCCTGGCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: FSRAGSPAQVIV*ASSVPTLLAQL
Trigger: CAGCTGGGCCAGGAGGGTTGGCACCGAGCTCGCTCAGACGATTACCTGAGCCGGGCTACCCGCTCTGCTGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 72 bp ACAGCCAGTGTGACAGAGCCTGCTGGCACTCCAGTCTaGTGGGAAGCACCCGGCTGCCAGGCTCTGGGAAGG +
Preference number: 6 (lower is better)
Translates to: TASVTEPAGTPV*WEAPGCQALGR
Trigger: CCTTCCCAGAGCCTGGCAGCCGGGTGCTTCCCAGCAGACTGGAGTGCCAGCAGGCTCTGTCACACTGGCTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp CAAGGAAGAGTTGTCCAGGTGGGCACGGGTGGCAGATaGGACACGGGACCCTGGGTCACTCCAGGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: QGRVVQVGTGGR*DTGPWVTPGSR
Trigger: CCTGCTGCCTGGAGTGACCCAGGGTCCCGTGTCCCATCTGCCACCCGTGCCCACCTGGACAACTCTTCCTTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp CACAAAGATGGTGTCCATGGGCTCCAGGCGGTGCCGTaGGGAGGGTCCTCCTCCTCCTCCTCTTCCTCCTCG +
Preference number: 6 (lower is better)
Translates to: HKDGVHGLQAVP*GGSSSSSSSSS
Trigger: CGAGGAGGAAGAGGAGGAGGAGGAGGACCCTCCCCACGGCACCGCCTGGAGCCCATGGACACCATCTTTGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 72 bp GGCACCGTCTCTCCCCCGCTCTGCGGGGTATCTGATTaGACAGCCAGTGTGACAGAGCCTGCTGGCACTCCA +
Preference number: 6 (lower is better)
Translates to: GTVSPPLCGVSD*TASVTEPAGTP
Trigger: TGGAGTGCCAGCAGGCTCTGTCACACTGGCTGTCCAATCAGATACCCCGCAGAGCGGGGGAGAGACGGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp GGGCGGGGCCACCATCCTTCACATTCTTCACAAAGATaGTGTCCATGGGCTCCAGGCGGTGCCGTGGGGAGG +
Preference number: 6 (lower is better)
Translates to: GRGHHPSHSSQR*CPWAPGGAVGR
Trigger: CCTCCCCACGGCACCGCCTGGAGCCCATGGACACCATCTTTGTGAAGAATGTGAAGGATGGTGGCCCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 72 bp GGCAGGGGCCCTGGTTGGTGGAGCATAGGTCTTCCGTaGGTAGCAGAGTGGAGGTGGTTCTGGGATGCTGCG +
Preference number: 6 (lower is better)
Translates to: GRGPGWWSIGLP*VAEWRWFWDAA
Trigger: CGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATGCTCCACCAACCAGGGCCCCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS TCA 72 bp CTGGGCCAAGCTGAAGGTGGGAAGTCCCCCAAAGGGTaGGTCCCGGAAGGAGAGGGCGTGCAAGAGACCAGT +
Preference number: 6 (lower is better)
Translates to: LGQAEGGKSPKG*VPEGEGVQETS
Trigger: ACTGGTCTCTTGCACGCCCTCTCCTTCCGGGACTCACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 72 bp CTTCAGAGGTGCCCCAGCTATCTAGAGACCCGTCCGTaGAGAAGCTCCGCAGCACTCGTAGGCTGGGCACCC +
Preference number: 6 (lower is better)
Translates to: LQRCPSYLETRP*RSSAALVGWAP
Trigger: GGGTGCCCAGCCTACGAGTGCTGCGGAGCTTCTTCACGGACGGGTCTCTAGATAGCTGGGGCACCTCTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
ENSMUST00000142465.8
CDS GCA 72 bp AGTCCCCCAAAGGGTGAGTCCCGGAAGGAGAGGGCGTaGAAGAGACCAGTCCGGCGCTGGAATGATGGGCTA +
Preference number: 6 (lower is better)
Translates to: SPPKGESRKERA*KRPVRRWNDGL
Trigger: TAGCCCATCATTCCAGCGCCGGACTGGTCTCTTGCACGCCCTCTCCTTCCGGGACTCACCCTTTGGGGGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp CTGCCTTGCTGGGGTCAGCTGGACCTTGCGACCCGTTaGAGGCTTCTGCCTCAGGACCACCTCATCACGATG +
Preference number: 6 (lower is better)
Translates to: LPCWGQLDLATR*RLLPQDHLITM
Trigger: CATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 72 bp CCTCTGGTGGGAATGATGCAGGAGACTGGGCCAAGCTaGAGGTGGGAAGTCCCCCAAAGGGTGAGTCCCGGA +
Preference number: 6 (lower is better)
Translates to: PLVGMMQETGPS*RWEVPQRVSPG
Trigger: TCCGGGACTCACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 72 bp GACGACCCTAGGTGGTTCGGAGGCCTCTGGTGGGAATaGTGCAGGAGACTGGGCCAAGCTGAAGGTGGGAAG +
Preference number: 6 (lower is better)
Translates to: DDPRWFGGLWWE*CRRLGQAEGGK
Trigger: CTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAACCACCTAGGGTCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS TCA 72 bp GTTGGAGGCTTCTGCCTCAGGACCACCTCATCACGATaGTCCTCTGCGGGAGGCTCTAGGGCTCGGGTGCTA +
Preference number: 6 (lower is better)
Translates to: VGGFCLRTTSSR*SSAGGSRARVL
Trigger: TAGCACCCGAGCCCTAGAGCCTCCCGCAGAGGATCATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 72 bp TTCAAGACGAGGGGACACCAGTGCTCCTGGACCCAGTaGTTCAGCAGAGCGGGTAGCCCGGCTCAGGTAATC +
Preference number: 6 (lower is better)
Translates to: FKTRGHQCSWTQ*FSRAGSPAQVI
Trigger: GATTACCTGAGCCGGGCTACCCGCTCTGCTGAAGCACTGGGTCCAGGAGCACTGGTGTCCCCTCGTCTTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 72 bp CTGGGATGCTGCGGGCCTCTCCAGAATACGGCTCGTTaGCCTTTAGGTAGGCATCCTGGGAGTAGGCCAGCT +
Preference number: 6 (lower is better)
Translates to: LGCCGPLQNTAR*PLGRHPGSRPA
Trigger: AGCTGGCCTACTCCCAGGATGCCTACCTAAAGGGCAACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 72 bp GGTTCGGAGGCCTCTGGTGGGAATGATGCAGGAGACTaGGCCAAGCTGAAGGTGGGAAGTCCCCCAAAGGGT +
Preference number: 6 (lower is better)
Translates to: GSEASGGNDAGD*AKLKVGSPPKG
Trigger: ACCCTTTGGGGGACTTCCCACCTTCAGCTTGGCCCAGTCTCCTGCATCATTCCCACCAGAGGCCTCCGAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp GGTTGGTGGAGCATAGGTCTTCCGTGGGTAGCAGAGTaGAGGTGGTTCTGGGATGCTGCGGGCCTCTCCAGA +
Preference number: 6 (lower is better)
Translates to: GWWSIGLPWVAE*RWFWDAAGLSR
Trigger: TCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTATGCTCCACCAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS GCA 72 bp TCCGTGGGTAGCAGAGTGGAGGTGGTTCTGGGATGCTaGGGGCCTCTCCAGAATACGGCTCGTTGCCCTTTA +
Preference number: 6 (lower is better)
Translates to: SVGSRVEVVLGC*GPLQNTARCPL
Trigger: TAAAGGGCAACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CAA 90 bp CAAGGTTCATCTGCCTTGCTGGGGTCAGCTGGACCTTGCGACCCGTaGGAGGCTTCTGCCTCAGGACCACCTCATCACGATGATCCTCTG +
Preference number: 6 (lower is better)
Translates to: QGSSALLGSAGPCDP*EASASGPPHHDDPL
Trigger: CAGAGGATCATCGTGATGAGGTGGTCCTGAGGCAGAAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 72 bp TGGGGACTCATCACCAAATCCAAGGTTCATCTGCCTTaGTGGGGTCAGCTGGACCTTGCGACCCGTTGGAGG +
Preference number: 6 (lower is better)
Translates to: WGLITKSKVHLP*WGQLDLATRWR
Trigger: CCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp TTCCTCCTTCAGGATGCAGTGCACGGCCGACTCGGGTaGGTACACGATGAAGTGGCGCAGGGTGAAACCAAA +
Preference number: 6 (lower is better)
Translates to: FLLQDAVHGRLG*VHDEVAQGETK
Trigger: TTTGGTTTCACCCTGCGCCACTTCATCGTGTACCCACCCGAGTCGGCCGTGCACTGCATCCTGAAGGAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS CCA 72 bp ATAGGTCTTCCGTGGGTAGCAGAGTGGAGGTGGTTCTaGGATGCTGCGGGCCTCTCCAGAATACGGCTCGTT +
Preference number: 6 (lower is better)
Translates to: IGLPWVAEWRWF*DAAGLSRIRLV
Trigger: AACGAGCCGTATTCTGGAGAGGCCCGCAGCATCCCAGAACCACCTCCACTCTGCTACCCACGGAAGACCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121799.8
CDS TCA 72 bp GGAGAGGGCGTGCAAGAGACCAGTCCGGCGCTGGAATaGTGGGCTATAGCTCCGATATCCAATGTACCCGAT +
Preference number: 6 (lower is better)
Translates to: GEGVQETSPALE*WAIAPISNVPD
Trigger: ATCGGGTACATTGGATATCGGAGCTATAGCCCATCATTCCAGCGCCGGACTGGTCTCTTGCACGCCCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS GCA 72 bp GGTTCTGGGGACTCATCACCAAATCCAAGGTTCATCTaGCTTGCTGGGGTCAGCTGGACCTTGCGACCCGTT +
Preference number: 6 (lower is better)
Translates to: GSGDSSPNPRFI*LAGVSWTLRPV
Trigger: AACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCCCCAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8
CDS CCA 72 bp GGACTCATCACCAAATCCAAGGTTCATCTGCCTTGCTaGGGTCAGCTGGACCTTGCGACCCGTTGGAGGCTT +
Preference number: 6 (lower is better)
Translates to: GLITKSKVHLPC*GQLDLATRWRL
Trigger: AAGCCTCCAACGGGTCGCAAGGTCCAGCTGACCCCAGCAAGGCAGATGAACCTTGGATTTGGTGATGAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107601.8
ENSMUST00000121799.8