RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGAP12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041225

Ensembl transcript IDs: ENSMUST00000062584.14, ENSMUST00000077128.13, ENSMUST00000182038.2, ENSMUST00000182066.8, ENSMUST00000182213.8, ENSMUST00000182383.8, ENSMUST00000182559.8, ENSMUST00000182921.2

Found 420 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAAATCAGACAGCAAGCCTTCACCCAAGGGATTCTATCTGGGTTATaGGCTTCGGCACTTAAGACTGCCACTCATGCAAACACCCTGAAA +
Preference number: 1 (lower is better)
Translates to: KIRQQAFTQGILSGL*ASALKTATHANTLK
Trigger: TTTCAGGGTGTTTGCATGAGTGGCAGTCTTAAGTGCCGAAGCTCATAACCCAGATAGAATCCCTTGGGTGAAGGCTTGCTGTCTGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 90 bp GTGTGCTGCTCCAACAGACAACTAAGGTATCTAGCAAGAATGCCATaGGACAGTAAAATCAGACAGCAAGCCTTCACCCAAGGGATTCTA +
Preference number: 1 (lower is better)
Translates to: VCCSNRQLRYLARMP*DSKIRQQAFTQGIL
Trigger: TAGAATCCCTTGGGTGAAGGCTTGCTGTCTGATTTTACTGTCTCATGGCATTCTTGCTAGATACCTTAGTTGTCTGTTGGAGCAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 90 bp AGAGTCACTGCTTGGTCCAAAATGAAACACACCACGTATAAGATTTaGAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTG +
Preference number: 1 (lower is better)
Translates to: RVTAWSKMKHTTYKI*NLGIQHLFHRLSFV
Trigger: CACAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACGTGGTGTGTTTCATTTTGGACCAAGCAGTGACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 90 bp GTTGTCCTTACCAAATTATCCAGTGTATATGACTGGTTAGAATTCTaGGTTTTGATGTTTACTGATAGTCAGAGGATGAAATGCAAGCAT +
Preference number: 1 (lower is better)
Translates to: VVLTKLSSVYDWLEF*VLMFTDSQRMKCKH
Trigger: ATGCTTGCATTTCATCCTCTGACTATCAGTAAACATCAAAACTCAGAATTCTAACCAGTCATATACACTGGATAATTTGGTAAGGACAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 90 bp AGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATTTaGGCTGGGTTAGGATTCTGTAATGATGATTCTAATGTCTGCTGT +
Preference number: 1 (lower is better)
Translates to: SVIFYPTSNLHVSTI*AGLGFCNDDSNVCC
Trigger: ACAGCAGACATTAGAATCATCATTACAGAATCCTAACCCAGCTCAAATAGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGATCAGAGTCACTGCTTaGTCCAAAATGAAACACACC +
Preference number: 2 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSIRVTA*SKMKHT
Trigger: GGTGTGTTTCATTTTGGACCAAGCAGTGACTCTGAT...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACACAACAAGCAGCAAATaGGGGCCCAGCTGTCGCCTT +
Preference number: 2 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNTTSSK*GPSCRL
Trigger: AAGGCGACAGCTGGGCCCTCATTTGCTGCTTGTTGT...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR CAA 90 bp GCAAGCATCCAGGATAAAATGAATCCAAATTTACACAGTCATAACTaGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCG +
Preference number: 2 (lower is better)
Translates to: ASIQDKMNPNLHSHN*LFAHNKQQMRAQLS
Trigger: CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATTTGGATTCATTTTATCCTGGATGCTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACATCAGAGTCACTGCTTaGTCCAAAATGAAACACACC +
Preference number: 2 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNIRVTA*SKMKHT
Trigger: GGTGTGTTTCATTTTGGACCAAGCAGTGACTCTGAT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACAACTTTCCCAAATCATaGCCTCTATCTGCAGGAAGC +
Preference number: 2 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNNFPKS*PLSAGS
Trigger: GCTTCCTGCAGATAGAGGCCATGATTTGGGAAAGTT...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
3UTR-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGGGTTAGATGTACTCTaGGCCTATACAACACGGTTA +
Preference number: 2 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNGLDVL*AYTTRL
Trigger: TAACCGTGTTGTATAGGCTCAGAGTACATCTAACCC...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACCAGTACCATTCTCATTaGAGTGGTCTGCTTCTAAGT +
Preference number: 2 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNQYHSH*SGLLLS
Trigger: ACTTAGAAGCAGACCACTGCAATGAGAATGGTACTG...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
3UTR-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACGCATCCAGGATAAAATaGATCCAAATTTACACAGTC +
Preference number: 2 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNASRIK*IQIYTV
Trigger: GACTGTGTAAATTTGGATTCATTTTATCCTGGATGC...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACTACACAGTCATAACTTaGTGTTTGCTCACAACAAGC +
Preference number: 2 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNYTVIT*CLLTTS
Trigger: GCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTA...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
3UTR-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCTACATTATCCAGTTTaGAGTCAGCAAGGACAATAC +
Preference number: 2 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDLHYPV*SQQGQY
Trigger: GTATTGTCCTTGCTGACTGCAAACTGGATAATGTAG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATATCTTCAACAGACCATaGCTCCCTGTAACAAAACCT +
Preference number: 2 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYIFNRP*LPVTKP
Trigger: AGGTTTTGTTACAGGGAGGCATGGTCTGTTGAAGAT...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
3UTR-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCACCACGTATAAGATTTaGAATCTTGGAATCCAGCAT +
Preference number: 2 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRATTYKI*NLGIQH
Trigger: ATGCTGGATTCCAAGATTTCAAATCTTATACGTGGT...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATACCACGTATAAGATTTaGAATCTTGGAATCCAGCAT +
Preference number: 2 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDTTYKI*NLGIQH
Trigger: ATGCTGGATTCCAAGATTTCAAATCTTATACGTGGT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCTACATTATCCAGTTTaGAGTCAGCAAGGACAATAC +
Preference number: 2 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETLHYPV*SQQGQY
Trigger: GTATTGTCCTTGCTGACTGCAAACTGGATAATGTAG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTACCACGTATAAGATTTaGAATCTTGGAATCCAGCAT +
Preference number: 2 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTITTYKI*NLGIQH
Trigger: ATGCTGGATTCCAAGATTTCAAATCTTATACGTGGT...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGCATCCAGGATAAAATaGATCCAAATTTACACAGTC +
Preference number: 2 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNASRIK*IQIYTV
Trigger: GACTGTGTAAATTTGGATTCATTTTATCCTGGATGC...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTTACACAGTCATAACTTaGTGTTTGCTCACAACAAGC +
Preference number: 2 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTYTVIT*CLLTTS
Trigger: GCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTA...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTATCAGAGTCACTGCTTaGTCCAAAATGAAACACACC +
Preference number: 2 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIIRVTA*SKMKHT
Trigger: GGTGTGTTTCATTTTGGACCAAGCAGTGACTCTGAT...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACACCACGTATAAGATTTaGAATCTTGGAATCCAGCAT +
Preference number: 2 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNTTYKI*NLGIQH
Trigger: ATGCTGGATTCCAAGATTTCAAATCTTATACGTGGT...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATAAACACCCTGAAATATaGAGTACACAGGTTTCAAAT +
Preference number: 2 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNKHPEI*STQVSN
Trigger: ATTTGAAACCTGTGTACTGCATATTTCAGGGTGTTT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATCAGAGTCACTGCTTaGTCCAAAATGAAACACACC +
Preference number: 2 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTIRVTA*SKMKHT
Trigger: GGTGTGTTTCATTTTGGACCAAGCAGTGACTCTGAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTCTACATTATCCAGTTTaGAGTCAGCAAGGACAATAC +
Preference number: 2 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTLHYPV*SQQGQY
Trigger: GTATTGTCCTTGCTGACTGCAAACTGGATAATGTAG...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR CAA 90 bp TTAGCTATAATTCAGTACAGCAAGACAGGTACCAAATACCCTGATTaGACTTATACTAACCAGAACTCCAGTATATCACAGTGTTTTAAG +
Preference number: 2 (lower is better)
Translates to: LAIIQYSKTGTKYPD*TYTNQNSSISQCFK
Trigger: CTTAAAACACTGTGATATACTGGAGTTCTGGTTAGTATAAGTCAAATCAGGGTATTTGGTACCTGTCTTGCTGTACTGAATTATAGCTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTAAACACCCTGAAATATaGAGTACACAGGTTTCAAAT +
Preference number: 2 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTKHPEI*STQVSN
Trigger: ATTTGAAACCTGTGTACTGCATATTTCAGGGTGTTT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR GCA 72 bp TTACGGACCATGAGAAGGAATCTACATTATCCAGTTTaGAGTCAGCAAGGACAATACCACAGGGGACTCACA +
Preference number: 3 (lower is better)
Translates to: LRTMRRNLHYPV*SQQGQYHRGLT
Trigger: TGTGAGTCCCCTGTGGTATTGTCCTTGCTGACTGCAAACTGGATAATGTAGATTCCTTCTCATGGTCCGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CAA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAAGGGGACTCACAGAGTaGTCCTTACCAAATTATCCA +
Preference number: 3 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQRGLTE*SLPNYP
Trigger: TGGATAATTTGGTAAGGACAACTCTGTGAGTCCCCT...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR GCA 72 bp GGTACACAGTCAAGACACAAGAGCCCTAAAGCACACTaGGTTATTAATGGCATCTTCAGGTTACACATTCTG +
Preference number: 3 (lower is better)
Translates to: GTQSRHKSPKAH*VINGIFRLHIL
Trigger: CAGAATGTGTAACCTGAAGATGCCATTAATAACGCAGTGTGCTTTAGGGCTCTTGTGTCTTGACTGTGTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182066.8
3UTR-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGGGGACTCACAGAGTaGTCCTTACCAAATTATCCA +
Preference number: 3 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDRGLTE*SLPNYP
Trigger: TGGATAATTTGGTAAGGACAACTCTGTGAGTCCCCT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 72 bp TCCAACAGACAACTAAGGTATCTAGCAAGAATGCCATaGGACAGTAAAATCAGACAGCAAGCCTTCACCCAA +
Preference number: 3 (lower is better)
Translates to: SNRQLRYLARMP*DSKIRQQAFTQ
Trigger: TTGGGTGAAGGCTTGCTGTCTGATTTTACTGTCTCATGGCATTCTTGCTAGATACCTTAGTTGTCTGTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 72 bp GCTTGGTCCAAAATGAAACACACCACGTATAAGATTTaGAATCTTGGAATCCAGCATCTATTCCACAGGCTG +
Preference number: 3 (lower is better)
Translates to: AWSKMKHTTYKI*NLGIQHLFHRL
Trigger: CAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACGTGGTGTGTTTCATTTTGGACCAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CAA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTGTCATAACTTGCTGTTaGCTCACAACAAGCAGCAAA +
Preference number: 3 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTVITCC*LTTSSK
Trigger: TTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGAC...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTGTCATAACTTGCTGTTaGCTCACAACAAGCAGCAAA +
Preference number: 3 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIVITCC*LTTSSK
Trigger: TTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGAC...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR TCA 72 bp TTCAGTACAGCAAGACAGGTACCAAATACCCTGATTTaGCTTATACTAACCAGAACTCCAGTATATCACAGT +
Preference number: 3 (lower is better)
Translates to: FSTARQVPNTLI*LILTRTPVYHS
Trigger: ACTGTGATATACTGGAGTTCTGGTTAGTATAAGTCAAATCAGGGTATTTGGTACCTGTCTTGCTGTACTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR-3UTR CAA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTGTCATAACTTGCTGTTaGCTCACAACAAGCAGCAAA +
Preference number: 3 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTVITCC*LTTSSK
Trigger: TTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGAC...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCTTCTGACCAACCCCTaGGAGGAGAGCCACACTGAC +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSLLTNP*EESHTD
Trigger: GTCAGTGTGGCTCTCCTCCCAGGGGTTGGTCAGAAG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGTGGTTGCCCTCATCTaGTCAGTGGAGCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSVVALI*SVELLL
Trigger: TAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCAC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTTCTCACGAACAGCTTaGAAAGTGGGGCGCCGGGTA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSFSRTA*KVGRRV
Trigger: TACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGGAGGAGAGCCACACTaGCTATCTGACTGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSGGEPH*LSDWLK
Trigger: TTTCAGCCAGTCAGATAGTCAGTGTGGCTCTCCTCC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGATTAGGGGGTGTGGTTaGCCTCATCTGCTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSIRGCG*PHLLSG
Trigger: TCCACTGAGCAGATGAGGGCAACCACACCCCCTAAT...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCGAACCCTGCAGCACTaGCCAAGAAGACAACCAGTT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSRTLQH*PRRQPV
Trigger: AACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGGTCCAGGCTTAGGTTaGGAGTCTGGCCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSGPGLG*ESGLNY
Trigger: ATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSPDSES*CILSEP
Trigger: AGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACTTCTGACCAACCCCTaGGAGGAGAGCCACACTGAC +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQLLTNP*EESHTD
Trigger: GTCAGTGTGGCTCTCCTCCCAGGGGTTGGTCAGAAG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGCTCCCGTGATGACATaGATGTCTTCCCATTTACTG +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSAPVMT*MSSHLL
Trigger: CAGTAAATGGGAAGACATTCATGTCATCACGGGAGC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSLALEG*GQKQSL
Trigger: TAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAGGAGGAGAGCCACACTaGCTATCTGACTGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQGGEPH*LSDWLK
Trigger: TTTCAGCCAGTCAGATAGTCAGTGTGGCTCTCCTCC...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCGGCAGTCCTGTTGCCTaGTTCACAGGTGGCATCAGA +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRAGSPVA*FTGGIR
Trigger: TCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCC...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATGTGGTTGCCCTCATCTaGTCAGTGGAGCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDVVALI*SVELLL
Trigger: TAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCAC...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTTCTCACGAACAGCTTaGAAAGTGGGGCGCCGGGTA +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDFSRTA*KVGRRV
Trigger: TACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAA...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCC +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSVHCEF*FGLITP
Trigger: GGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTGTTCCTTGAACAGATaGCGATGGCTTTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSCSLNR*RWLSKT
Trigger: AGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGATAAGACCTGTTCCTTaGACAGATGACGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSIRPVP*TDDDGF
Trigger: AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTAT...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAGGTCCAGGCTTAGGTTaGGAGTCTGGCCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQGPGLG*ESGLNY
Trigger: ATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACC...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTA +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNSGPGK*PNKRVL
Trigger: TAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGA...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGAATCTGGCCTTCCTTaGTTAGGGGGTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIESGLP*LGGVVA
Trigger: GGCAACCACACCCCCTAATCAAGGAAGGCCAGATTC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGAATCTGGCCTTCCTTaGTTAGGGGGTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETESGLP*LGGVVA
Trigger: GGCAACCACACCCCCTAATCAAGGAAGGCCAGATTC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACATTCCCCATTAACTTaGATTGCTGGGCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQHSPLT*IAGLPG
Trigger: TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGTCCATATTTCTCCTaGCCCTTCAGACTGCCGGCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDSPYFS*PFRLPA
Trigger: AGCCGGCAGTCTGAAGGGTCAGGAGAAATATGGACT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182213.8
CDS-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTTCATCCAGCTCTTCTaGCCAACCCCTGGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNFIQLF*PTPGRR
Trigger: TCTCCTCCCAGGGGTTGGTCAGAAGAGCTGGATGAA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTTCATCCAGCTCTTCTaGCCAACCCCTGGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIFIQLF*PTPGRR
Trigger: TCTCCTCCCAGGGGTTGGTCAGAAGAGCTGGATGAA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGGCAGTCCTGTTGCCTaGTTCACAGGTGGCATCAGA +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNGSPVA*FTGGIR
Trigger: TCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCC...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGGCAGTCCTGTTGCCTaGTTCACAGGTGGCATCAGA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETGSPVA*FTGGIR
Trigger: TCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGGCAGTCCTGTTGCCTaGTTCACAGGTGGCATCAGA +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIGSPVA*FTGGIR
Trigger: TCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNIWQSC*LLHRWH
Trigger: ATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAAT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCT +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQPDSES*CILSEP
Trigger: AGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACAACACTATTGGTTCTTaGAGCCGCCTGTCCAAGCTC +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNNTIGS*SRLSKL
Trigger: GAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACTGTTTCCTCTTCAGCTaGTTCATCGGCCTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNCFLFS*FIGLCY
Trigger: GTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACA...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCCATGCTCTTCGACATaGTCAATGCATAACTTCACA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSPCSST*SMHNFT
Trigger: TGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGAGTTTTGTGGTAGTTaGAGAATCCTTGTCGTTGGA +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSEFCGS*RILVVG
Trigger: TCCAACGACAAGGATTCTCCAACTACCACAAAACTC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGGCTCTTGCTCTCCTaGGCTCTGAAAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDRLLLS*ALKISA
Trigger: AGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGCTTCTGACCAACCCCTaGGAGGAGAGCCACACTGAC +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMLLTNP*EESHTD
Trigger: GTCAGTGTGGCTCTCCTCCCAGGGGTTGGTCAGAAG...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000077128.13
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDSAPLV*SQSFCP
Trigger: AGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTGGCTTTCCAAAACTTaGAAGCTCAGGCATTTTGTT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSWLSKT*KLRHFV
Trigger: AACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCGGTCCAGGCTTAGGTTaGGAGTCTGGCCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRAGPGLG*ESGLNY
Trigger: ATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACC...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTA +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRASGPGK*PNKRVL
Trigger: TAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGAATCTGGCCTTCCTTaGTTAGGGGGTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLESGLP*LGGVVA
Trigger: GGCAACCACACCCCCTAATCAAGGAAGGCCAGATTC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAGAATCTGGCCTTCCTTaGTTAGGGGGTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEESGLP*LGGVVA
Trigger: GGCAACCACACCCCCTAATCAAGGAAGGCCAGATTC...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACCTTCAGGTCCACTGTaGATTCTGGTTTGGACTGAT +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQPSGPL*ILVWTD
Trigger: ATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGCATCATTATCAGACTaGATTAGCAGTTCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSASLSD*ISSSVP
Trigger: AGGAACAGAACTGCTAATTCAGTCTGATAATGATGC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACTTTTCTACCCCTGGTaGATCTGGTGTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQLFYPW*IWCFLF
Trigger: GAAGAGGAAACACCAGATTCACCAGGGGTAGAAAAG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGATCTGCATTGTATCTTaGTTTGGCTTTGGCAACTGT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSICIVS*FGFGNC
Trigger: ACAGTTGCCAAAGCCAAATCAAGATACAATGCAGAT...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCGCCACACTGACTATCTaGCTGGCTGAAACAACTGCT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRAATLTI*LAETTA
Trigger: AGCAGTTGTTTCAGCCAGTCAGATAGTCAGTGTGGC...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGGAGGAGAGCCACACTaGCTATCTGACTGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETGGEPH*LSDWLK
Trigger: TTTCAGCCAGTCAGATAGTCAGTGTGGCTCTCCTCC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAATTCATCCAGCTCTTCTaGCCAACCCCTGGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEFIQLF*PTPGRR
Trigger: TCTCCTCCCAGGGGTTGGTCAGAAGAGCTGGATGAA...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGGCAGTCCTGTTGCCTaGTTCACAGGTGGCATCAGA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLGSPVA*FTGGIR
Trigger: TCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDIWQSC*LLHRWH
Trigger: ATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAAT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDPDSES*CILSEP
Trigger: AGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGTGGTTGCCCTCATCTaGTCAGTGGAGCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLVVALI*SVELLL
Trigger: TAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCAC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGGTGGTTGCCCTCATCTaGTCAGTGGAGCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMVVALI*SVELLL
Trigger: TAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCAC...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCATTAGGGGGTGTGGTTaGCCTCATCTGCTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETIRGCG*PHLLSG
Trigger: TCCACTGAGCAGATGAGGGCAACCACACCCCCTAAT...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACCCCATTAACTTGAATTaGTGGGCTCCCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNPINLN*WAPRKR
Trigger: CCTCTTCCTGGGAGCCCAGCAATTCAAGTTAATGGG...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCCCATTAACTTGAATTaGTGGGCTCCCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRAPINLN*WAPRKR
Trigger: CCTCTTCCTGGGAGCCCAGCAATTCAAGTTAATGGG...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCAACACTATTGGTTCTTaGAGCCGCCTGTCCAAGCTC +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRANTIGS*SRLSKL
Trigger: GAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTT...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATCGAACCCTGCAGCACTaGCCAAGAAGACAACCAGTT +
Preference number: 4 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYRTLQH*PRRQPV
Trigger: AACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCG...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATCGAACCCTGCAGCACTaGCCAAGAAGACAACCAGTT +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNRTLQH*PRRQPV
Trigger: AACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCG...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGTAAAGACGAACCCTaGAGCACTGCCCAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDSKDEP*STAQED
Trigger: GTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCAGTAAAGACGAACCCTaGAGCACTGCCCAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRASKDEP*STAQED
Trigger: GTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACT...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTGCCATTTCAATCACTaGCCCCTTCAGGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRACHFNH*PLQVHC
Trigger: ACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACTGTTTCCTCTTCAGCTaGTTCATCGGCCTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNCFLFS*FIGLCY
Trigger: GTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACA...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTTCTCACGAACAGCTTaGAAAGTGGGGCGCCGGGTA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLFSRTA*KVGRRV
Trigger: TACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGTTCTCACGAACAGCTTaGAAAGTGGGGCGCCGGGTA +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTFSRTA*KVGRRV
Trigger: TACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAA...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACTTCTCACGAACAGCTTaGAAAGTGGGGCGCCGGGTA +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNFSRTA*KVGRRV
Trigger: TACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAA...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACCTGGTATACAAGGTATaGCCACGTTCATCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNLVYKV*PRSSSS
Trigger: AGAGCTGGATGAACGTGGGCATACCTTGTATACCAG...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATGCCACCAGTCATCATTaGTCTTCTTCACCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDATSHH*SSSPGG
Trigger: ACCTCCTGGTGAAGAAGACCAATGATGACTGGTGGC...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTGCCTGCTTCACAGGTaGCATCAGAGCTTTGCGAGT +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTICLLHR*HQSFAS
Trigger: ACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAATTAACTTGAATTGCTaGGCTCCCAGGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQINLNC*APRKRR
Trigger: CCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAAT...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCCACTCTTGCTCTCCTaGGCTCTGAAAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETPLLLS*ALKISA
Trigger: AGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGTGG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCT +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTISAPLV*SQSFCP
Trigger: AGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCT...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETSAPLV*SQSFCP
Trigger: AGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCT...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGGTCCAGGCTTAGGTTaGGAGTCTGGCCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETGPGLG*ESGLNY
Trigger: ATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTA +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTISGPGK*PNKRVL
Trigger: TAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCATTCCCCATTAACTTaGATTGCTGGGCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETHSPLT*IAGLPG
Trigger: TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGATCATCAACATGCTTaGGCCACTCTTGCTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIDHQHA*ATLALL
Trigger: CAGGAGAGCAAGAGTGGCTCAAGCATGTTGATGATC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGTCCATATTTCTCCTaGCCCTTCAGACTGCCGGCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSPYFS*PFRLPA
Trigger: AGCCGGCAGTCTGAAGGGTCAGGAGAAATATGGACT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062584.14
ENSMUST00000182213.8
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCTTTTCTACCCCTGGTaGATCTGGTGTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDLFYPW*IWCFLF
Trigger: GAAGAGGAAACACCAGATTCACCAGGGGTAGAAAAG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACAGTTTTCTTCTGCTCTaGAGAATCCATGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNSFLLL*RIHAGS
Trigger: GGATCCAGCATGGATTCTTCAGAGCAGAAGAAAACT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGCCACACTGACTATCTaGCTGGCTGAAACAACTGCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETATLTI*LAETTA
Trigger: AGCAGTTGTTTCAGCCAGTCAGATAGTCAGTGTGGC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTCATCAGGTCTGACTTaGCACCAGTCATCATTGGTC +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDSSGLT*HQSSLV
Trigger: GACCAATGATGACTGGTGGCAAGTCAGACCTGATGA...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYIWQSC*LLHRWH
Trigger: ATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAAT...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTGTGGTTGCCCTCATCTaGTCAGTGGAGCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIVVALI*SVELLL
Trigger: TAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCAC...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATTAGGGGGTGTGGTTaGCCTCATCTGCTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLIRGCG*PHLLSG
Trigger: TCCACTGAGCAGATGAGGGCAACCACACCCCCTAAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTATTAGGGGGTGTGGTTaGCCTCATCTGCTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTIRGCG*PHLLSG
Trigger: TCCACTGAGCAGATGAGGGCAACCACACCCCCTAAT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCCCATTAACTTGAATTaGTGGGCTCCCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETPINLN*WAPRKR
Trigger: CCTCTTCCTGGGAGCCCAGCAATTCAAGTTAATGGG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCGAACCCTGCAGCACTaGCCAAGAAGACAACCAGTT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLRTLQH*PRRQPV
Trigger: AACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCGAACCCTGCAGCACTaGCCAAGAAGACAACCAGTT +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNRTLQH*PRRQPV
Trigger: AACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTGTTTCCTCTTCAGCTaGTTCATCGGCCTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTICFLFS*FIGLCY
Trigger: GTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCTTCGACATGCTCAATaGATAACTTCACAAACTTTG +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSLRHAQ*ITSQTL
Trigger: CAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACGGATCACGGCAAGGTTaGCACTCACTCTGTAAATAC +
Preference number: 4 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNGSRQG*HSLCKY
Trigger: GTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCC...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCTGGTATACAAGGTATaGCCACGTTCATCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDLVYKV*PRSSSS
Trigger: AGAGCTGGATGAACGTGGGCATACCTTGTATACCAG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCTGGTATACAAGGTATaGCCACGTTCATCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRALVYKV*PRSSSS
Trigger: AGAGCTGGATGAACGTGGGCATACCTTGTATACCAG...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGCCTGCTTCACAGGTaGCATCAGAGCTTTGCGAGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCLLHR*HQSFAS
Trigger: ACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATATTAACTTGAATTGCTaGGCTCCCAGGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDINLNC*APRKRR
Trigger: CCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAAT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCACTCTTGCTCTCCTaGGCTCTGAAAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPLLLS*ALKISA
Trigger: AGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGTGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
CDS-3UTR CCA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGCATTGTATCTTGATTTaGCTTTGGCAACTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSHCILI*LWQLSD
Trigger: ATCAGACAGTTGCCAAAGCCAAATCAAGATACAATG...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTA +
Preference number: 4 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNLALEG*GQKQSL
Trigger: TAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAG...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGGCTCTTGCTCTCCTaGGCTCTGAAAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLRLLLS*ALKISA
Trigger: AGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTAGGCTCTTGCTCTCCTaGGCTCTGAAAATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTRLLLS*ALKISA
Trigger: AGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSAPLV*SQSFCP
Trigger: AGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTSAPLV*SQSFCP
Trigger: AGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATAGTTCTCATCAGGTCTaGCTTGCCACCAGTCATCAT +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNSSHQV*LATSHH
Trigger: ATGATGACTGGTGGCAAGTCAGACCTGATGAGAACT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAATGTTCCTTGAACAGATaGCGATGGCTTTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQCSLNR*RWLSKT
Trigger: AGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACA...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACATAAGACCTGTTCCTTaGACAGATGACGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNIRPVP*TDDDGF
Trigger: AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTAT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGGTCCAGGCTTAGGTTaGGAGTCTGGCCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLGPGLG*ESGLNY
Trigger: ATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSGPGK*PNKRVL
Trigger: TAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTGAATCTGGCCTTCCTTaGTTAGGGGGTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTESGLP*LGGVVA
Trigger: GGCAACCACACCCCCTAATCAAGGAAGGCCAGATTC...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCATTCCCCATTAACTTaGATTGCTGGGCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLHSPLT*IAGLPG
Trigger: TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCATTCCCCATTAACTTaGATTGCTGGGCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNHSPLT*IAGLPG
Trigger: TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGATCATCAACATGCTTaGGCCACTCTTGCTCTCCTG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLDHQHA*ATLALL
Trigger: CAGGAGAGCAAGAGTGGCTCAAGCATGTTGATGATC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACAATTCTGGTTTGGACTaGTTACTCCCAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNNSGLD*LLPNQL
Trigger: AAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATCCTTCAGGTCCACTGTaGATTCTGGTTTGGACTGAT +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNPSGPL*ILVWTD
Trigger: ATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGG...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCTTTTCTACCCCTGGTaGATCTGGTGTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETLFYPW*IWCFLF
Trigger: GAAGAGGAAACACCAGATTCACCAGGGGTAGAAAAG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLIWQSC*LLHRWH
Trigger: ATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPDSES*CILSEP
Trigger: AGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCCATTAACTTGAATTaGTGGGCTCCCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPINLN*WAPRKR
Trigger: CCTCTTCCTGGGAGCCCAGCAATTCAAGTTAATGGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAACACTATTGGTTCTTaGAGCCGCCTGTCCAAGCTC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLNTIGS*SRLSKL
Trigger: GAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGTAAAGACGAACCCTaGAGCACTGCCCAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSKDEP*STAQED
Trigger: GTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACAGTAAAGACGAACCCTaGAGCACTGCCCAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNSKDEP*STAQED
Trigger: GTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACT...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGCCATTTCAATCACTaGCCCCTTCAGGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCHFNH*PLQVHC
Trigger: ACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAATGCCATTTCAATCACTaGCCCCTTCAGGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIECHFNH*PLQVHC
Trigger: ACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCA...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTTGCCATTTCAATCACTaGCCCCTTCAGGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTCHFNH*PLQVHC
Trigger: ACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCA...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRACFIGL*YLVIDS
Trigger: ACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGTTTCCTCTTCAGCTaGTTCATCGGCCTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCFLFS*FIGLCY
Trigger: GTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGGATCACGGCAAGGTTaGCACTCACTCTGTAAATAC +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIGSRQG*HSLCKY
Trigger: GTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGGATCACGGCAAGGTTaGCACTCACTCTGTAAATAC +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNGSRQG*HSLCKY
Trigger: GTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCC...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCTCATCATGATTGACTaGGAACCTCAGCTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDLIMID*EPQLLD
Trigger: ATCCAGAAGCTGAGGTTCGCAGTCAATCATGATGAG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGCCACCAGTCATCATTaGTCTTCTTCACCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLATSHH*SSSPGG
Trigger: ACCTCCTGGTGAAGAAGACCAATGATGACTGGTGGC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGGCCACCAGTCATCATTaGTCTTCTTCACCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTATSHH*SSSPGG
Trigger: ACCTCCTGGTGAAGAAGACCAATGATGACTGGTGGC...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTATGTCCAAGAACTCTaGCCCGGGAAAATGACCAAA +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDYVQEL*PGKMTK
Trigger: TTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATA...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATATTAACTTGAATTGCTaGGCTCCCAGGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNINLNC*APRKRR
Trigger: CCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAAT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAGAGTTTTGTGGTAGTTaGAGAATCCTTGTCGTTGGA +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQEFCGS*RILVVG
Trigger: TCCAACGACAAGGATTCTCCAACTACCACAAAACTC...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETLALEG*GQKQSL
Trigger: TAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGTTCTCATCAGGTCTaGCTTGCCACCAGTCATCAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSSHQV*LATSHH
Trigger: ATGATGACTGGTGGCAAGTCAGACCTGATGAGAACT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATATAAGACCTGTTCCTTaGACAGATGACGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDIRPVP*TDDDGF
Trigger: AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTAT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTCACATGACTGTTCCTaGGAGAAGCTAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRASHDCS*EKLVFS
Trigger: AGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCATTCCCCATTAACTTaGATTGCTGGGCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIHSPLT*IAGLPG
Trigger: TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAATTCTGGTTTGGACTaGTTACTCCCAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDNSGLD*LLPNQL
Trigger: AAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCTTCAGGTCCACTGTaGATTCTGGTTTGGACTGAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPSGPL*ILVWTD
Trigger: ATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGCCTTCAGGTCCACTGTaGATTCTGGTTTGGACTGAT +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTPSGPL*ILVWTD
Trigger: ATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGG...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGCCTTCAGGTCCACTGTaGATTCTGGTTTGGACTGAT +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMPSGPL*ILVWTD
Trigger: ATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGG...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCTTTTCTACCCCTGGTaGATCTGGTGTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLFYPW*IWCFLF
Trigger: GAAGAGGAAACACCAGATTCACCAGGGGTAGAAAAG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGCTTTTCTACCCCTGGTaGATCTGGTGTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTLFYPW*IWCFLF
Trigger: GAAGAGGAAACACCAGATTCACCAGGGGTAGAAAAG...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGCTCCCGTGATGACATaGATGTCTTCCCATTTACTG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLAPVMT*MSSHLL
Trigger: CAGTAAATGGGAAGACATTCATGTCATCACGGGAGC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGGCTCCCGTGATGACATaGATGTCTTCCCATTTACTG +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTAPVMT*MSSHLL
Trigger: CAGTAAATGGGAAGACATTCATGTCATCACGGGAGC...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACGCTCCCGTGATGACATaGATGTCTTCCCATTTACTG +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNAPVMT*MSSHLL
Trigger: CAGTAAATGGGAAGACATTCATGTCATCACGGGAGC...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACATCTGCATTGTATCTTaGTTTGGCTTTGGCAACTGT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNICIVS*FGFGNC
Trigger: ACAGTTGCCAAAGCCAAATCAAGATACAATGCAGAT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACAATATACGCTTGTCCTaGAGTGATCTTTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNNIRLS*SDLSTS
Trigger: AGAAGTGGAAAGATCACTGCAGGACAAGCGTATATT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCATCAGGTCTGACTTaGCACCAGTCATCATTGGTC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSSGLT*HQSSLV
Trigger: GACCAATGATGACTGGTGGCAAGTCAGACCTGATGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTAGTAAAGACGAACCCTaGAGCACTGCCCAAGAAGAC +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNISKDEP*STAQED
Trigger: GTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACT...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGT +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNCFIGL*YLVIDS
Trigger: ACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETCFIGL*YLVIDS
Trigger: ACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACTCAACATCTAAACCATaGTCTTCGACATGCTCAATG +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNSTSKP*SSTCSM
Trigger: CATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGA...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGGATCACGGCAAGGTTaGCACTCACTCTGTAAATAC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLGSRQG*HSLCKY
Trigger: GTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACGGATCACGGCAAGGTTaGCACTCACTCTGTAAATAC +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNGSRQG*HSLCKY
Trigger: GTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCC...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACCAAAAACAATCGCTATaGTCTGATAGGTCATTCGGT +
Preference number: 4 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNQKQSL*SDRSFG
Trigger: ACCGAATGACCTATCAGAGCATAGCGATTGTTTTTG...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTATGTCCAAGAACTCTaGCCCGGGAAAATGACCAAA +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNYVQEL*PGKMTK
Trigger: TTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATTAACTTGAATTGCTaGGCTCCCAGGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLINLNC*APRKRR
Trigger: CCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCC +
Preference number: 4 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYVHCEF*FGLITP
Trigger: GGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLALEG*GQKQSL
Trigger: TAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTA +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTLALEG*GQKQSL
Trigger: TAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAG...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTTGGATCCGAAATTCTaGTTGGCATCACGAATAAGA +
Preference number: 4 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRALDPKF*LASRIR
Trigger: TCTTATTCGTGATGCCAATCAGAATTTCGGATCCAA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATTCACATGACTGTTCCTaGGAGAAGCTAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYSHDCS*EKLVFS
Trigger: AGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGA...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTCACATGACTGTTCCTaGGAGAAGCTAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETSHDCS*EKLVFS
Trigger: AGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTCTTTGCTGCTGAGATaGAGCATTATACTTTGGCAA +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDSLLLR*SIILWQ
Trigger: TTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGA...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGTTTTCTTCTGCTCTaGAGAATCCATGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSFLLL*RIHAGS
Trigger: GGATCCAGCATGGATTCTTCAGAGCAGAAGAAAACT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTGCCACACTGACTATCTaGCTGGCTGAAACAACTGCT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTATLTI*LAETTA
Trigger: AGCAGTTGTTTCAGCCAGTCAGATAGTCAGTGTGGC...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000077128.13
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTIWQSC*LLHRWH
Trigger: ATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTCCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTPDSES*CILSEP
Trigger: AGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGG...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTGCCATTTCAATCACTaGCCCCTTCAGGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTCHFNH*PLQVHC
Trigger: ACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCFIGL*YLVIDS
Trigger: ACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATCCATGCTCTTCGACATaGTCAATGCATAACTTCACA +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNPCSST*SMHNFT
Trigger: TGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGG...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCTCATCATGATTGACTaGGAACCTCAGCTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLIMID*EPQLLD
Trigger: ATCCAGAAGCTGAGGTTCGCAGTCAATCATGATGAG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCTCATCATGATTGACTaGGAACCTCAGCTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNLIMID*EPQLLD
Trigger: ATCCAGAAGCTGAGGTTCGCAGTCAATCATGATGAG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCAAAAACAATCGCTATaGTCTGATAGGTCATTCGGT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDQKQSL*SDRSFG
Trigger: ACCGAATGACCTATCAGAGCATAGCGATTGTTTTTG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTAAGCGTGTCCTATTCTaGCTGGAAACTTTAGGAGAA +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIKRVLF*LETLGE
Trigger: TTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTT...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTATGTCCAAGAACTCTaGCCCGGGAAAATGACCAAA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLYVQEL*PGKMTK
Trigger: TTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLVHCEF*FGLITP
Trigger: GGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCC +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTVHCEF*FGLITP
Trigger: GGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTAGTTCTCATCAGGTCTaGCTTGCCACCAGTCATCAT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTSSHQV*LATSHH
Trigger: ATGATGACTGGTGGCAAGTCAGACCTGATGAGAACT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTGGCTTTCCAAAACTTaGAAGCTCAGGCATTTTGTT +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIWLSKT*KLRHFV
Trigger: AACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGTTCCTTGAACAGATaGCGATGGCTTTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCSLNR*RWLSKT
Trigger: AGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTTGTTCCTTGAACAGATaGCGATGGCTTTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTCSLNR*RWLSKT
Trigger: AGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACA...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATAAGACCTGTTCCTTaGACAGATGACGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLIRPVP*TDDDGF
Trigger: AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTTGGATCCGAAATTCTaGTTGGCATCACGAATAAGA +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETLDPKF*LASRIR
Trigger: TCTTATTCGTGATGCCAATCAGAATTTCGGATCCAA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCACATGACTGTTCCTaGGAGAAGCTAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSHDCS*EKLVFS
Trigger: AGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTCTTTGCTGCTGAGATaGAGCATTATACTTTGGCAA +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTISLLLR*SIILWQ
Trigger: TTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTCTTTGCTGCTGAGATaGAGCATTATACTTTGGCAA +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNSLLLR*SIILWQ
Trigger: TTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAATTCTGGTTTGGACTaGTTACTCCCAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLNSGLD*LLPNQL
Trigger: AAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTAATTCTGGTTTGGACTaGTTACTCCCAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTNSGLD*LLPNQL
Trigger: AAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGCATCATTATCAGACTaGATTAGCAGTTCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIASLSD*ISSSVP
Trigger: AGGAACAGAACTGCTAATTCAGTCTGATAATGATGC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTAGTTTTCTTCTGCTCTaGAGAATCCATGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNISFLLL*RIHAGS
Trigger: GGATCCAGCATGGATTCTTCAGAGCAGAAGAAAACT...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTTTCTGGTACACAGTATaGACTGCTATATTACCAGTC +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIFWYTV*TAILPV
Trigger: GACTGGTAATATAGCAGTTCATACTGTGTACCAGAA...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTTCTGGTACACAGTATaGACTGCTATATTACCAGTC +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNFWYTV*TAILPV
Trigger: GACTGGTAATATAGCAGTTCATACTGTGTACCAGAA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTAATATACGCTTGTCCTaGAGTGATCTTTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTINIRLS*SDLSTS
Trigger: AGAAGTGGAAAGATCACTGCAGGACAAGCGTATATT...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCAATATACGCTTGTCCTaGAGTGATCTTTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETNIRLS*SDLSTS
Trigger: AGAAGTGGAAAGATCACTGCAGGACAAGCGTATATT...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATAATATACGCTTGTCCTaGAGTGATCTTTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNNIRLS*SDLSTS
Trigger: AGAAGTGGAAAGATCACTGCAGGACAAGCGTATATT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTCATCAGGTCTGACTTaGCACCAGTCATCATTGGTC +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTSSGLT*HQSSLV
Trigger: GACCAATGATGACTGGTGGCAAGTCAGACCTGATGA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAAATACATTCTTCTTaGTCGATTTGTCCTTTGATG +
Preference number: 4 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQQIHSS*SICPLM
Trigger: CATCAAAGGACAAATCGAGCAAGAAGAATGTATTTG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGT +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNICFIGL*YLVIDS
Trigger: ACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCA...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCATGCTCTTCGACATaGTCAATGCATAACTTCACA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPCSST*SMHNFT
Trigger: TGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCCATGCTCTTCGACATaGTCAATGCATAACTTCACA +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNPCSST*SMHNFT
Trigger: TGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATGTACACAGTATGAACTaGTATATTACCAGTCTCTCT +
Preference number: 4 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDVHSMN*YITSLS
Trigger: AGAGAGACTGGTAATATAGCAGTTCATACTGTGTAC...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAAGCGTGTCCTATTCTaGCTGGAAACTTTAGGAGAA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLKRVLF*LETLGE
Trigger: TTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAAAGCGTGTCCTATTCTaGCTGGAAACTTTAGGAGAA +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEKRVLF*LETLGE
Trigger: TTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTT...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATTAACTTGAATTGCTaGGCTCCCAGGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTINLNC*APRKRR
Trigger: CCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGAGTTTTGTGGTAGTTaGAGAATCCTTGTCGTTGGA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLEFCGS*RILVVG
Trigger: TCCAACGACAAGGATTCTCCAACTACCACAAAACTC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAGAGTTTTGTGGTAGTTaGAGAATCCTTGTCGTTGGA +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEEFCGS*RILVVG
Trigger: TCCAACGACAAGGATTCTCCAACTACCACAAAACTC...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR CAA 72 bp CACAAGATATTAGCCACAGGACTTAGGAGAAAGGTTTaGGACAGATCATACACACACACACACAAATTGTTC +
Preference number: 4 (lower is better)
Translates to: HKILATGLRRKV*DRSYTHTHKLF
Trigger: GAACAATTTGTGTGTGTGTGTGTATGATCTGTCCAAAACCTTTCTCCTAAGTCCTGTGGCTAATATCTTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLHIKCF*VLIRSD
Trigger: GTCAGACCTGATGAGAACTCAAAAGCATTTTATGTG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTHIKCF*VLIRSD
Trigger: GTCAGACCTGATGAGAACTCAAAAGCATTTTATGTG...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNHIKCF*VLIRSD
Trigger: GTCAGACCTGATGAGAACTCAAAAGCATTTTATGTG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGGCTTTCCAAAACTTaGAAGCTCAGGCATTTTGTT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLWLSKT*KLRHFV
Trigger: AACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTGGCTTTCCAAAACTTaGAAGCTCAGGCATTTTGTT +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMWLSKT*KLRHFV
Trigger: AACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCA...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTTGTTCCTTGAACAGATaGCGATGGCTTTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNICSLNR*RWLSKT
Trigger: AGTTTTGGAAAGCCATCGTCATCTGTTCAAGGAACA...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTTGGATCCGAAATTCTaGTTGGCATCACGAATAAGA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLDPKF*LASRIR
Trigger: TCTTATTCGTGATGCCAATCAGAATTTCGGATCCAA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACTTGGATCCGAAATTCTaGTTGGCATCACGAATAAGA +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNLDPKF*LASRIR
Trigger: TCTTATTCGTGATGCCAATCAGAATTTCGGATCCAA...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCTTTGCTGCTGAGATaGAGCATTATACTTTGGCAA +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSLLLR*SIILWQ
Trigger: TTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACTCTTTGCTGCTGAGATaGAGCATTATACTTTGGCAA +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNSLLLR*SIILWQ
Trigger: TTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGA...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGCATCATTATCAGACTaGATTAGCAGTTCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLASLSD*ISSSVP
Trigger: AGGAACAGAACTGCTAATTCAGTCTGATAATGATGC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGGCATCATTATCAGACTaGATTAGCAGTTCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMASLSD*ISSSVP
Trigger: AGGAACAGAACTGCTAATTCAGTCTGATAATGATGC...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGGCATCATTATCAGACTaGATTAGCAGTTCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTASLSD*ISSSVP
Trigger: AGGAACAGAACTGCTAATTCAGTCTGATAATGATGC...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTAGTTTTCTTCTGCTCTaGAGAATCCATGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTSFLLL*RIHAGS
Trigger: GGATCCAGCATGGATTCTTCAGAGCAGAAGAAAACT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATCTGCATTGTATCTTaGTTTGGCTTTGGCAACTGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLICIVS*FGFGNC
Trigger: ACAGTTGCCAAAGCCAAATCAAGATACAATGCAGAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAATCTGCATTGTATCTTaGTTTGGCTTTGGCAACTGT +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEICIVS*FGFGNC
Trigger: ACAGTTGCCAAAGCCAAATCAAGATACAATGCAGAT...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTATCTGCATTGTATCTTaGTTTGGCTTTGGCAACTGT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTICIVS*FGFGNC
Trigger: ACAGTTGCCAAAGCCAAATCAAGATACAATGCAGAT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTTCTGGTACACAGTATaGACTGCTATATTACCAGTC +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLFWYTV*TAILPV
Trigger: GACTGGTAATATAGCAGTTCATACTGTGTACCAGAA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTCTGGTACACAGTATaGACTGCTATATTACCAGTC +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMFWYTV*TAILPV
Trigger: GACTGGTAATATAGCAGTTCATACTGTGTACCAGAA...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR TCA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGTTCTGGTACACAGTATaGACTGCTATATTACCAGTC +
Preference number: 4 (lower is better)
Translates to: LRELSNSLVCYLFKKITTFWYTV*TAILPV
Trigger: GACTGGTAATATAGCAGTTCATACTGTGTACCAGAA...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAATATACGCTTGTCCTaGAGTGATCTTTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLNIRLS*SDLSTS
Trigger: AGAAGTGGAAAGATCACTGCAGGACAAGCGTATATT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACCAAATACATTCTTCTTaGTCGATTTGTCCTTTGATG +
Preference number: 4 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNQIHSS*SICPLM
Trigger: CATCAAAGGACAAATCGAGCAAGAAGAATGTATTTG...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCCATGCTCTTCGACATaGTCAATGCATAACTTCACA +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIPCSST*SMHNFT
Trigger: TGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCAACATCTAAACCATaGTCTTCGACATGCTCAATG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSTSKP*SSTCSM
Trigger: CATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACTCAACATCTAAACCATaGTCTTCGACATGCTCAATG +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNSTSKP*SSTCSM
Trigger: CATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGA...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCAAAAACAATCGCTATaGTCTGATAGGTCATTCGGT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLQKQSL*SDRSFG
Trigger: ACCGAATGACCTATCAGAGCATAGCGATTGTTTTTG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCGTACACAGTATGAACTaGTATATTACCAGTCTCTCT +
Preference number: 4 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETVHSMN*YITSLS
Trigger: AGAGAGACTGGTAATATAGCAGTTCATACTGTGTAC...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCC +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTVHCEF*FGLITP
Trigger: GGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
3UTR CAA 72 bp ATTCAGTACAGCAAGACAGGTACCAAATACCCTGATTaGACTTATACTAACCAGAACTCCAGTATATCACAG +
Preference number: 4 (lower is better)
Translates to: IQYSKTGTKYPD*TYTNQNSSISQ
Trigger: CTGTGATATACTGGAGTTCTGGTTAGTATAAGTCAAATCAGGGTATTTGGTACCTGTCTTGCTGTACTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIHIKCF*VLIRSD
Trigger: GTCAGACCTGATGAGAACTCAAAAGCATTTTATGTG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATAAGACCTGTTCCTTaGACAGATGACGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTIRPVP*TDDDGF
Trigger: AAAGCCATCGTCATCTGTTCAAGGAACAGGTCTTAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTCACATGACTGTTCCTaGGAGAAGCTAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTSHDCS*EKLVFS
Trigger: AGAGAAAACTAGCTTCTCTCAGGAACAGTCATGTGA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTAATTCTGGTTTGGACTaGTTACTCCCAAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTNSGLD*LLPNQL
Trigger: AAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCTTCGACATGCTCAATaGATAACTTCACAAACTTTG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLRHAQ*ITSQTL
Trigger: CAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTCTTCGACATGCTCAATaGATAACTTCACAAACTTTG +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTLRHAQ*ITSQTL
Trigger: CAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAG...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCAAAAACAATCGCTATaGTCTGATAGGTCATTCGGT +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIQKQSL*SDRSFG
Trigger: ACCGAATGACCTATCAGAGCATAGCGATTGTTTTTG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGTACACAGTATGAACTaGTATATTACCAGTCTCTCT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLVHSMN*YITSLS
Trigger: AGAGAGACTGGTAATATAGCAGTTCATACTGTGTAC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGGCCTGAATTATAATTaGATCCGAAATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLGLNYN*IRNSDW
Trigger: CCAATCAGAATTTCGGATCCAATTATAATTCAGGCC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAGGCCTGAATTATAATTaGATCCGAAATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEGLNYN*IRNSDW
Trigger: CCAATCAGAATTTCGGATCCAATTATAATTCAGGCC...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGGGCCTGAATTATAATTaGATCCGAAATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMGLNYN*IRNSDW
Trigger: CCAATCAGAATTTCGGATCCAATTATAATTCAGGCC...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CCA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACGGCCTGAATTATAATTaGATCCGAAATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNGLNYN*IRNSDW
Trigger: CCAATCAGAATTTCGGATCCAATTATAATTCAGGCC...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCATTGTATCTTGATTTaGCTTTGGCAACTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLHCILI*LWQLSD
Trigger: ATCAGACAGTTGCCAAAGCCAAATCAAGATACAATG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTCATTGTATCTTGATTTaGCTTTGGCAACTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTHCILI*LWQLSD
Trigger: ATCAGACAGTTGCCAAAGCCAAATCAAGATACAATG...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAACATTGTATCTTGATTTaGCTTTGGCAACTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: SISQYHSHCSGLLLSVIEHCILI*LWQLSD
Trigger: ATCAGACAGTTGCCAAAGCCAAATCAAGATACAATG...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR TCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTGGCTTTCCAAAACTTaGAAGCTCAGGCATTTTGTT +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTWLSKT*KLRHFV
Trigger: AACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCAAATACATTCTTCTTaGTCGATTTGTCCTTTGATG +
Preference number: 4 (lower is better)
Translates to: RIRFEILESSIYSTGCLLQIHSS*SICPLM
Trigger: CATCAAAGGACAAATCGAGCAAGAAGAATGTATTTG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCTTCGACATGCTCAATaGATAACTTCACAAACTTTG +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNILRHAQ*ITSQTL
Trigger: CAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTCAACATCTAAACCATaGTCTTCGACATGCTCAATG +
Preference number: 4 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTSTSKP*SSTCSM
Trigger: CATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTGGCCTGAATTATAATTaGATCCGAAATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIGLNYN*IRNSDW
Trigger: CCAATCAGAATTTCGGATCCAATTATAATTCAGGCC...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR GCA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTCAAATACATTCTTCTTaGTCGATTTGTCCTTTGATG +
Preference number: 4 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIQIHSS*SICPLM
Trigger: CATCAAAGGACAAATCGAGCAAGAAGAATGTATTTG...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS GCA 90 bp ATGAAAGAGGCTCTTGCTCTCCTGGGCTCTGAAAATCTCGGCTTGTaGTCACATCTCGAGCCCATCGAGGTGGTTTCCAGGTTCGCTCCT +
Preference number: 5 (lower is better)
Translates to: MKEALALLGSENLGL*SHLEPIEVVSRFAP
Trigger: AGGAGCGAACCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTTTCTCACGAACAGCTaGCAAAGTGGGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSFLTNS*QSGAPG
Trigger: ACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CCA 90 bp GCTCTGAAAATCTCGGCTTGTGCTCACATCTCGAGCCCATCGAGGTaGTTTCCAGGTTCGCTCCTGGGTTGTGCGGTTATAGTAGTAACA +
Preference number: 5 (lower is better)
Translates to: ALKISACAHISSPSR*FPGSLLGCAVIVVT
Trigger: TGTTACTACTATAACCGCACAACCCAGGAGCGAACCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGGGTGGCATCAGAGCTTaGCGAGTGACCTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSGGIRA*RVTSLT
Trigger: TGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACC...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTCTGAAAATCTCGGCTaGTGCTCACATCTCGAGCCC +
Preference number: 5 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSSENLG*CSHLEP
Trigger: GGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CCA 90 bp TGTCTTCATAGAGTTATTTGGCAGTCCTGTTGCCTGCTTCACAGGTaGCATCAGAGCTTTGCGAGTGACCTCCTTGACATACTGTGCTGG +
Preference number: 5 (lower is better)
Translates to: CLHRVIWQSCCLLHR*HQSFASDLLDILCW
Trigger: CCAGCACAGTATGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACTTTCTCACGAACAGCTaGCAAAGTGGGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNFLTNS*QSGAPG
Trigger: ACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAA...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS TCA 90 bp CATCTGCGCTGTAGTAATACTGTCTACCTTGATCATCAACATGCTTaGGCCACTCTTGCTCTCCTGGGCTCTGAAAATCTCGGCTTGTGC +
Preference number: 5 (lower is better)
Translates to: HLRCSNTVYLDHQHA*ATLALLGSENLGLC
Trigger: GCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACTACAGCGCAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182383.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACTTGCGAGTGACCTCCTaGACATACTGTGCTGGCACA +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNLRVTS*TYCAGT
Trigger: TGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAA...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACCCATTCCCCATTAACTaGAATTGCTGGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNPFPIN*NCWAPR
Trigger: CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGG...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTTTCTCACGAACAGCTaGCAAAGTGGGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETFLTNS*QSGAPG
Trigger: ACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS TCA 90 bp GCGAGTGACCTCCTTGACATACTGTGCTGGCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGACTTGCCACCAGTCATCATTGGTCTT +
Preference number: 5 (lower is better)
Translates to: ASDLLDILCWHIKCF*VLIRSDLPPVIIGL
Trigger: AAGACCAATGATGACTGGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAGGTCACTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS GCA 90 bp CAGGAGGTAGCGCTCCCCTTGTCTGATCACAATCTTTCTGTCCTTTaGGTCATACTCATAATCATACTCCACCTCAATATACGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: QEVALPLSDHNLSVL*VILIIILHLNIRLS
Trigger: GGACAAGCGTATATTGAGGTGGAGTATGATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNEVALP*SDHNLS
Trigger: AGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTC...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTGCCACCAGTCATCATaGGTCTTCTTCACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRACHQSS*VFFTRR
Trigger: CCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACTCATCAGGTCTGACTaGCCACCAGTCATCATTGGT +
Preference number: 5 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQLIRSD*PPVIIG
Trigger: ACCAATGATGACTGGTGGCAAGTCAGACCTGATGAG...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGGTGGCATCAGAGCTTaGCGAGTGACCTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIGGIRA*RVTSLT
Trigger: TGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATAGAATCTGGCCTTCCTaGATTAGGGGGTGTGGTTGC +
Preference number: 5 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDRIWPS*IRGCGC
Trigger: GCAACCACACCCCCTAATCAAGGAAGGCCAGATTCT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCCATTCCCCATTAACTaGAATTGCTGGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDPFPIN*NCWAPR
Trigger: CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCCAGCTGTCGTACTCCCAAACCAGCTaGTACTACTTCCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: SHNLLFAHNKQQMRAQLSYSQTS*YYFLEF
Trigger: AAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTA...CGACAGCTGGGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTTTCTCACGAACAGCTaGCAAAGTGGGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLFLTNS*QSGAPG
Trigger: ACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACTTTCTCACGAACAGCTaGCAAAGTGGGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNFLTNS*QSGAPG
Trigger: ACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAA...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDEVALP*SDHNLS
Trigger: AGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTC...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTGCCACCAGTCATCATaGGTCTTCTTCACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETCHQSS*VFFTRR
Trigger: CCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACCTCATCAGGTCTGACTaGCCACCAGTCATCATTGGT +
Preference number: 5 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNLIRSD*PPVIIG
Trigger: ACCAATGATGACTGGTGGCAAGTCAGACCTGATGAG...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATCTCATCAGGTCTGACTaGCCACCAGTCATCATTGGT +
Preference number: 5 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDLIRSD*PPVIIG
Trigger: ACCAATGATGACTGGTGGCAAGTCAGACCTGATGAG...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGGTGGCATCAGAGCTTaGCGAGTGACCTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLGGIRA*RVTSLT
Trigger: TGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATCCATTCCCCATTAACTaGAATTGCTGGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNPFPIN*NCWAPR
Trigger: CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGG...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCCATTCCCCATTAACTaGAATTGCTGGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETPFPIN*NCWAPR
Trigger: CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTCTGAAAATCTCGGCTaGTGCTCACATCTCGAGCCC +
Preference number: 5 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNSENLG*CSHLEP
Trigger: GGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS TCA 90 bp AGTCATCATTGGTCTTCTTCACCAGGAGGTAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCTTTGCGTCATACTCATAATCATACT +
Preference number: 5 (lower is better)
Translates to: SHHWSSSPGGSAPLV*SQSFCPLRHTHNHT
Trigger: AGTATGATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS TCA 90 bp GAGAAGCTAGTTTTCTCTATGTCCAAGAACTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTATTCTGGCTGGAAACTTTAGGAGAA +
Preference number: 5 (lower is better)
Translates to: EKLVFSMSKNSGPGK*PNKRVLFWLETLGE
Trigger: TTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGAGAAAACTAGCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
ENSMUST00000182921.2
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGCCACCAGTCATCATaGGTCTTCTTCACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCHQSS*VFFTRR
Trigger: CCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTTGCGAGTGACCTCCTaGACATACTGTGCTGGCACA +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLRVTS*TYCAGT
Trigger: TGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAATTGCGAGTGACCTCCTaGACATACTGTGCTGGCACA +
Preference number: 5 (lower is better)
Translates to: SISQYHSHCSGLLLSVIELRVTS*TYCAGT
Trigger: TGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAA...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTGGTGGCATCAGAGCTTaGCGAGTGACCTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIGGIRA*RVTSLT
Trigger: TGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACC...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGTCCAGGCTTAGGTaGAGAGTCTGGCCTGAATTA +
Preference number: 5 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYRSRLR*RVWPEL
Trigger: TAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCT...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATAGGTCCAGGCTTAGGTaGAGAGTCTGGCCTGAATTA +
Preference number: 5 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNRSRLR*RVWPEL
Trigger: TAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGAATCTGGCCTTCCTaGATTAGGGGGTGTGGTTGC +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLRIWPS*IRGCGC
Trigger: GCAACCACACCCCCTAATCAAGGAAGGCCAGATTCT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAAGAATCTGGCCTTCCTaGATTAGGGGGTGTGGTTGC +
Preference number: 5 (lower is better)
Translates to: SISQYHSHCSGLLLSVIERIWPS*IRGCGC
Trigger: GCAACCACACCCCCTAATCAAGGAAGGCCAGATTCT...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCCATTCCCCATTAACTaGAATTGCTGGGCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLPFPIN*NCWAPR
Trigger: CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTCTGAAAATCTCGGCTaGTGCTCACATCTCGAGCCC +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLSENLG*CSHLEP
Trigger: GGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTTCTGAAAATCTCGGCTaGTGCTCACATCTCGAGCCC +
Preference number: 5 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTSENLG*CSHLEP
Trigger: GGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGA...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATGCTTGAGCCACTCTaGCTCTCCTGGGCTCTGAAA +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLMLEPL*LSWALK
Trigger: TTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp ACCAGAACTCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAAATAACTTCACAAACTTaGGCACTGTCCCATTCTCCC +
Preference number: 5 (lower is better)
Translates to: TRTPVYHSVLSPVSVLLQITSQT*ALSHSP
Trigger: GGGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTAT...TTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS TCA 90 bp TCGAGTTTTCAGCTCAAATACATTCTTCTTGCTCGATTTGTCCTTTaGTGCCATTTCAATCACTGCCCCCTTCAGGTCCACTGTGAATTC +
Preference number: 5 (lower is better)
Translates to: SSFQLKYILLARFVL*CHFNHCPLQVHCEF
Trigger: GAATTCACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGAAAACTCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCCACCTCAATATACGCTaGTCCTGCAGTGATCTTTCC +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETHLNIR*SCSDLS
Trigger: GGAAAGATCACTGCAGGACAAGCGTATATTGAGGTG...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLEVALP*SDHNLS
Trigger: AGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTEVALP*SDHNLS
Trigger: AGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTC...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AATCATTTCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: NHFLSNTDDKEVCGAREMEVALP*SDHNLS
Trigger: AGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTC...CATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGAAATGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTTGCCACCAGTCATCATaGGTCTTCTTCACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: AGSLIVMETVTNVMIRNICHQSS*VFFTRR
Trigger: CCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCA...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCTCATCAGGTCTGACTaGCCACCAGTCATCATTGGT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLLIRSD*PPVIIG
Trigger: ACCAATGATGACTGGTGGCAAGTCAGACCTGATGAG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCTCATCAGGTCTGACTaGCCACCAGTCATCATTGGT +
Preference number: 5 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNLIRSD*PPVIIG
Trigger: ACCAATGATGACTGGTGGCAAGTCAGACCTGATGAG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTTTGCGAGTGACCTCCTaGACATACTGTGCTGGCACA +
Preference number: 5 (lower is better)
Translates to: AGSLIVMETVTNVMIRNILRVTS*TYCAGT
Trigger: TGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAA...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAGGTCCAGGCTTAGGTaGAGAGTCTGGCCTGAATTA +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLRSRLR*RVWPEL
Trigger: TAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AGTATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAAGGTCCAGGCTTAGGTaGAGAGTCTGGCCTGAATTA +
Preference number: 5 (lower is better)
Translates to: SISQYHSHCSGLLLSVIERSRLR*RVWPEL
Trigger: TAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCT...TTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAATACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTAGAATCTGGCCTTCCTaGATTAGGGGGTGTGGTTGC +
Preference number: 5 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIRIWPS*IRGCGC
Trigger: GCAACCACACCCCCTAATCAAGGAAGGCCAGATTCT...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATATAACTTCACAAACTTaGGCACTGTCCCATTCTCCC +
Preference number: 5 (lower is better)
Translates to: ASICRKPNSHGNSYQCHDITSQT*ALSHSP
Trigger: GGGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTAT...ATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CCA 90 bp TATGAACTGCTATATTACCAGTCTCTCTTTCTGGCTTTAGAAGGGTaGGGCCAAAAACAATCGCTATGCTCTGATAGGTCATTCGGTTTT +
Preference number: 5 (lower is better)
Translates to: YELLYYQSLFLALEG*GQKQSLCSDRSFGF
Trigger: AAAACCGAATGACCTATCAGAGCATAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAGAAAGAGAGACTGGTAATATAGCAGTTCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCACCTCAATATACGCTaGTCCTGCAGTGATCTTTCC +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLHLNIR*SCSDLS
Trigger: GGAAAGATCACTGCAGGACAAGCGTATATTGAGGTG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACCACCTCAATATACGCTaGTCCTGCAGTGATCTTTCC +
Preference number: 5 (lower is better)
Translates to: SAGSLIVMETVTNVMIRNHLNIR*SCSDLS
Trigger: GGAAAGATCACTGCAGGACAAGCGTATATTGAGGTG...GTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTTGCCACCAGTCATCATaGGTCTTCTTCACCAGGAGG +
Preference number: 5 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTCHQSS*VFFTRR
Trigger: CCTCCTGGTGAAGAAGACCAATGATGACTGGTGGCA...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACATGGCTTTCCAAAACTaGAAAGCTCAGGCATTTTGT +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNMAFQN*KAQAFC
Trigger: ACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCAT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp GCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATGTCATGATTAGAAACATTAGGTCCAGGCTTAGGTaGAGAGTCTGGCCTGAATTA +
Preference number: 5 (lower is better)
Translates to: AGSLIVMETVTNVMIRNIRSRLR*RVWPEL
Trigger: TAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCT...AATGTTTCTAATCATGACATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTAGAATCTGGCCTTCCTaGATTAGGGGGTGTGGTTGC +
Preference number: 5 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTRIWPS*IRGCGC
Trigger: GCAACCACACCCCCTAATCAAGGAAGGCCAGATTCT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATGCTTGAGCCACTCTaGCTCTCCTGGGCTCTGAAA +
Preference number: 5 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTMLEPL*LSWALK
Trigger: TTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp ACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATAGGAAGAACTACTCCCAAACCAGCTaGTACTACTTCCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: TLMIRKCVVLGKCWYRKNYSQTS*YYFLEF
Trigger: AAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTA...GTTCTTCCTATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCTGCTCGATTTGTCCTTaGATGCCATTTCAATCACTG +
Preference number: 5 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRACSICP*MPFQSL
Trigger: CAGTGATTGAAATGGCATCAAAGGACAAATCGAGCA...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACAATCTGCATTGTATCTaGATTTGGCTTTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNNLHCI*IWLWQL
Trigger: CAGTTGCCAAAGCCAAATCAAGATACAATGCAGATT...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCAGTATATCACAGTGTTTTAAGTCCTGTCAGTGTGCTGCTCCAACAGACAACCAATCTTTCTGTCCTTaGCGTCATACTCATAATCAT +
Preference number: 5 (lower is better)
Translates to: SSISQCFKSCQCAAPTDNQSFCP*RHTHNH
Trigger: ATGATTATGAGTATGACGCAAAGGACAGAAAGATTG...GTTGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AATTTACACAGTCATAACTTGCTGTTTGCTCACAACAAGCAGCAAATGAGGGCCGTAATACTGTCTACCTaGATCATCAACATGCTTGAG +
Preference number: 5 (lower is better)
Translates to: NLHSHNLLFAHNKQQMRAVILST*IINMLE
Trigger: CTCAAGCATGTTGATGATCAAGGTAGACAGTATTAC...GGCCCTCATTTGCTGCTTGTTGTGAGCAAACAGCAAGTTATGACTGTGTAAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATTACTCCCAAACCAGCTaGTACTACTTCCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNYSQTS*YYFLEF
Trigger: AAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTA...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATTGCTCGATTTGTCCTTaGATGCCATTTCAATCACTG +
Preference number: 5 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYCSICP*MPFQSL
Trigger: CAGTGATTGAAATGGCATCAAAGGACAAATCGAGCA...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCTGCTCGATTTGTCCTTaGATGCCATTTCAATCACTG +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETCSICP*MPFQSL
Trigger: CAGTGATTGAAATGGCATCAAAGGACAAATCGAGCA...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATAACTTCACAAACTTaGGCACTGTCCCATTCTCCC +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLITSQT*ALSHSP
Trigger: GGGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp TCCTTTCAAACACTGATGATAAGGAAGTGTGTGGTGCTAGGGAAATGTTGGTATATGGCTTTCCAAAACTaGAAAGCTCAGGCATTTTGT +
Preference number: 5 (lower is better)
Translates to: SFQTLMIRKCVVLGKCWYMAFQN*KAQAFC
Trigger: ACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCAT...ATACCAACATTTCCCTAGCACCACACACTTCCTTATCATCAGTGTTTGAAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTATGGCTTTCCAAAACTaGAAAGCTCAGGCATTTTGT +
Preference number: 5 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIMAFQN*KAQAFC
Trigger: ACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCAT...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTGCTGTACACATTAAATAACCTAAGGAGCTGCTCCTGTAGTGTGTTCACTATTGTAATACTGTCTACCTaGATCATCAACATGCTTGAG +
Preference number: 5 (lower is better)
Translates to: LLYTLNNLRSCSCSVFTIVILST*IINMLE
Trigger: CTCAAGCATGTTGATGATCAAGGTAGACAGTATTAC...AATAGTGAACACACTACAGGAGCAGCTCCTTAGGTTATTTAATGTGTACAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTACTCCCAAACCAGCTaGTACTACTTCCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLYSQTS*YYFLEF
Trigger: AAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGTACTCCCAAACCAGCTaGTACTACTTCCTTGAGTTT +
Preference number: 5 (lower is better)
Translates to: LRELSNSLVCYLFKKITTYSQTS*YYFLEF
Trigger: AAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTA...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGTGCTCGATTTGTCCTTaGATGCCATTTCAATCACTG +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLCSICP*MPFQSL
Trigger: CAGTGATTGAAATGGCATCAAAGGACAAATCGAGCA...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ATTTCCCAGTACCATTCTCATTGCAGTGGTCTGCTTCTAAGTGTAATTGAAACCAATCTGCATTGTATCTaGATTTGGCTTTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: ISQYHSHCSGLLLSVIETNLHCI*IWLWQL
Trigger: CAGTTGCCAAAGCCAAATCAAGATACAATGCAGATT...GGTTTCAATTACACTTAGAAGCAGACCACTGCAATGAGAATGGTACTGGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp AAATCATGGCCTCTATCTGCAGGAAGCCTAATAGTCATGGAAACAGTTACCAATAATCTGCATTGTATCTaGATTTGGCTTTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: KSWPLSAGSLIVMETVTNNLHCI*IWLWQL
Trigger: CAGTTGCCAAAGCCAAATCAAGATACAATGCAGATT...ATTGGTAACTGTTTCCATGACTATTAGGCTTCCTGCAGATAGAGGCCATGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CCA 90 bp GAATCTGGTGTTTCCTCTTCAGCTGCTTCATCGGCCTCTGCTACCTaGTTATTGATAGTACTACTAAGAACTTTAAACCAATCATTAATA +
Preference number: 5 (lower is better)
Translates to: ESGVSSSAASSASAT*LLIVLLRTLNQSLI
Trigger: TATTAATGATTGGTTTAAAGTTCTTAGTAGTACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACACCAGATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGATGGCTTTCCAAAACTaGAAAGCTCAGGCATTTTGT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLMAFQN*KAQAFC
Trigger: ACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCAT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGGTAATACTGTCTACCTaGATCATCAACATGCTTGAG +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLVILST*IINMLE
Trigger: CTCAAGCATGTTGATGATCAAGGTAGACAGTATTAC...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTGCGTGAGCTGTCAAACAGCTTAGTTTGTTACCTATTTAAGAAGATTACAACGGTAATACTGTCTACCTaGATCATCAACATGCTTGAG +
Preference number: 5 (lower is better)
Translates to: LRELSNSLVCYLFKKITTVILST*IINMLE
Trigger: CTCAAGCATGTTGATGATCAAGGTAGACAGTATTAC...CGTTGTAATCTTCTTAAATAGGTAACAAACTAAGCTGTTTGACAGCTCACGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGAATCTGCATTGTATCTaGATTTGGCTTTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLNLHCI*IWLWQL
Trigger: CAGTTGCCAAAGCCAAATCAAGATACAATGCAGATT...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp ACATCAAACAATGTCTGTCTCCACAGTGTCATACCAAAAACTCAATATGGCACTAATCTGCATTGTATCTaGATTTGGCTTTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: TSNNVCLHSVIPKTQYGTNLHCI*IWLWQL
Trigger: CAGTTGCCAAAGCCAAATCAAGATACAATGCAGATT...AGTGCCATATTGAGTTTTTGGTATGACACTGTGGAGACAGACATTGTTTGATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CGTATAAGATTTGAAATCTTGGAATCCAGCATCTATTCCACAGGCTGTCTTTTGCAATCTTTCTGTCCTTaGCGTCATACTCATAATCAT +
Preference number: 5 (lower is better)
Translates to: RIRFEILESSIYSTGCLLQSFCP*RHTHNH
Trigger: ATGATTATGAGTATGACGCAAAGGACAGAAAGATTG...CAAAAGACAGCCTGTGGAATAGATGCTGGATTCCAAGATTTCAAATCTTATACG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS-3UTR CAA 90 bp CTCAAATTTCGCAGTGTCATTTTCTATCCAACATCCAATTTACATGTTTCCACTATGGCTTTCCAAAACTaGAAAGCTCAGGCATTTTGT +
Preference number: 5 (lower is better)
Translates to: LKFRSVIFYPTSNLHVSTMAFQN*KAQAFC
Trigger: ACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCAT...AGTGGAAACATGTAAATTGGATGTTGGATAGAAAATGACACTGCGAAATTTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS GCA 72 bp GCTCTTGCTCTCCTGGGCTCTGAAAATCTCGGCTTGTaGTCACATCTCGAGCCCATCGAGGTGGTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: ALALLGSENLGL*SHLEPIEVVSR
Trigger: CCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS GCA 72 bp ACTCTTGCTCTCCTGGGCTCTGAAAATCTCGGCTTGTaGTCACATCTCGAGCCCATCGAGGTGGTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: TLALLGSENLGL*SHLEPIEVVSR
Trigger: CCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182383.8
CDS CAA 90 bp CTGATGAAAGAGGCTCTTGCTCTCCTGGGCTCTGAAAATCTCGGCTaGTGCTCACATCTCGAGCCCATCGAGGTGGTTTCCAGGTTCGCT +
Preference number: 6 (lower is better)
Translates to: LMKEALALLGSENLG*CSHLEPIEVVSRFA
Trigger: AGCGAACCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CAA 72 bp AGTCCTGTTGCCTGCTTCACAGGTGGCATCAGAGCTTaGCGAGTGACCTCCTTGACATACTGTGCTGGCACA +
Preference number: 6 (lower is better)
Translates to: SPVACFTGGIRA*RVTSLTYCAGT
Trigger: TGTGCCAGCACAGTATGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS TCA 72 bp TCAACATGCTTGAGCCACTCTTGCTCTCCTGGGCTCTaGAAATCTCGGCTTGTGCTCACATCTCGAGCCCAT +
Preference number: 6 (lower is better)
Translates to: STCLSHSCSPGL*KSRLVLTSRAH
Trigger: ATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCATGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182383.8
CDS TCA 72 bp TCTTCTGATGAAAGAGGCTCTTGCTCTCCTGGGCTCTaGAAATCTCGGCTTGTGCTCACATCTCGAGCCCAT +
Preference number: 6 (lower is better)
Translates to: SSDERGSCSPGL*KSRLVLTSRAH
Trigger: ATGGGCTCGAGATGTGAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS GCA 72 bp GAGCTGCTGCTAAGTTCATCTCCAGACTCGGAATCCTaGTGTATTCTTTCGGAGCCTTCTCCAGCTGAGTCA +
Preference number: 6 (lower is better)
Translates to: ELLLSSSPDSES*CILSEPSPAES
Trigger: TGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGGAGATGAACTTAGCAGCAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
ENSMUST00000182921.2
CDS CCA 72 bp AGAGTTATTTGGCAGTCCTGTTGCCTGCTTCACAGGTaGCATCAGAGCTTTGCGAGTGACCTCCTTGACATA +
Preference number: 6 (lower is better)
Translates to: RVIWQSCCLLHR*HQSFASDLLDI
Trigger: TATGTCAAGGAGGTCACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp CTGTCTACCTTGATCATCAACATGCTTGAGCCACTCTaGCTCTCCTGGGCTCTGAAAATCTCGGCTTGTGCT +
Preference number: 6 (lower is better)
Translates to: LSTLIINMLEPL*LSWALKISACA
Trigger: AGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182383.8
CDS TCA 72 bp TGGTCTTCTTCACCAGGAGGTAGCGCTCCCCTTGTCTaGTCACAATCTTTCTGTCCTTTGCGTCATACTCAT +
Preference number: 6 (lower is better)
Translates to: WSSSPGGSAPLV*SQSFCPLRHTH
Trigger: ATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp CCGAGATCCATCTGCGCTGTAGTAATACTGTCTACCTaGATCATCAACATGCTTGAGCCACTCTTGCTCTCC +
Preference number: 6 (lower is better)
Translates to: PRSICAVVILST*IINMLEPLLLS
Trigger: GGAGAGCAAGAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACTACAGCGCAGATGGATCTCGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182383.8
CDS CAA 90 bp CCACCAGTCATCATTGGTCTTCTTCACCAGGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCTGTCCTTTGCGTCATACTCATAATC +
Preference number: 6 (lower is better)
Translates to: PPVIIGLLHQEVALP*SDHNLSVLCVILII
Trigger: GATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACTGGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS GCA 72 bp CTGTATTGTCTTCATAGAGTTATTTGGCAGTCCTGTTaGCTGCTTCACAGGTGGCATCAGAGCTTTGCGAGT +
Preference number: 6 (lower is better)
Translates to: LYCLHRVIWQSC*LLHRWHQSFAS
Trigger: ACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACAATACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CCA 72 bp TTCAATCACTGCCCCCTTCAGGTCCACTGTGAATTCTaGTTTGGACTGATTACTCCCAAACCAGCTTGTACT +
Preference number: 6 (lower is better)
Translates to: FNHCPLQVHCEF*FGLITPKPACT
Trigger: AGTACAAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGGGGGCAGTGATTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp ATCATTGGTCTTCTTCACCAGGAGGTAGCGCTCCCCTaGTCTGATCACAATCTTTCTGTCCTTTGCGTCATA +
Preference number: 6 (lower is better)
Translates to: IIGLLHQEVALP*SDHNLSVLCVI
Trigger: TATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS TCA 72 bp CTCCTTGACATACTGTGCTGGCACATAAAATGCTTTTaGGTTCTCATCAGGTCTGACTTGCCACCAGTCATC +
Preference number: 6 (lower is better)
Translates to: LLDILCWHIKCF*VLIRSDLPPVI
Trigger: GATGACTGGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS TCA 72 bp GTTTTCTCTATGTCCAAGAACTCTGGCCCGGGAAAATaGCCAAATAAGCGTGTCCTATTCTGGCTGGAAACT +
Preference number: 6 (lower is better)
Translates to: VFSMSKNSGPGK*PNKRVLFWLET
Trigger: AGTTTCCAGCCAGAATAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGAGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
ENSMUST00000182921.2
CDS CAA 72 bp TCAGGTAAGCAGAGTTTTGTGGTAGTTGGAGAATCCTaGTCGTTGGAGTCCAACACAATGGTGCTATGTCTC +
Preference number: 6 (lower is better)
Translates to: SGKQSFVVVGES*SLESNTMVLCL
Trigger: GAGACATAGCACCATTGTGTTGGACTCCAACGACAAGGATTCTCCAACTACCACAAAACTCTGCTTACCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000062584.14
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS CAA 90 bp GTTCCTTGTCGAGTTTTCAGCTCAAATACATTCTTCTTGCTCGATTaGTCCTTTGATGCCATTTCAATCACTGCCCCCTTCAGGTCCACT +
Preference number: 6 (lower is better)
Translates to: VPCRVFSSNTFFLLD*SFDAISITAPFRST
Trigger: AGTGGACCTGAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGAAAACTCGACAAGGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp TCAGCTCAAATACATTCTTCTTGCTCGATTTGTCCTTaGATGCCATTTCAATCACTGCCCCCTTCAGGTCCA +
Preference number: 6 (lower is better)
Translates to: SAQIHSSCSICP*MPFQSLPPSGP
Trigger: TGGACCTGAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp CCGAGATCCATCTGCGCTGTAGTAATACTGTCTACCTaGATCATCAACATGCTTGAGCCACTTTTCCTTAGT +
Preference number: 6 (lower is better)
Translates to: PRSICAVVILST*IINMLEPLFLS
Trigger: ACTAAGGAAAAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACTACAGCGCAGATGGATCTCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182213.8
ENSMUST00000182559.8
CDS GCA 72 bp GCGCTCCCCTTGTCTGATCACAATCTTTCTGTCCTTTaGGTCATACTCATAATCATACTCCACCTCAATATA +
Preference number: 6 (lower is better)
Translates to: ALPLSDHNLSVL*VILIIILHLNI
Trigger: TATATTGAGGTGGAGTATGATTATGAGTATGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182038.2
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS GCA 72 bp ATCTGGTGTTTCCTCTTCAGCTGCTTCATCGGCCTCTaGTACCTGGTTATTGATAGTACTACTAAGAACTTT +
Preference number: 6 (lower is better)
Translates to: IWCFLFSCFIGL*YLVIDSTTKNF
Trigger: AAAGTTCTTAGTAGTACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACACCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp CGAGTTTTCAGCTCAAATACATTCTTCTTGCTCGATTaGTCCTTTGATGCCATTTCAATCACTGCCCCCTTC +
Preference number: 6 (lower is better)
Translates to: RVFSSNTFFLLD*SFDAISITAPF
Trigger: GAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGAAAACTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS GCA 72 bp CATCAACATCTAAACCATGCTCTTCGACATGCTCAATaGATAACTTCACAAACTTTGGCACTGTCCCATTCT +
Preference number: 6 (lower is better)
Translates to: HQHLNHALRHAQ*ITSQTLALSHS
Trigger: AGAATGGGACAGTGCCAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CCA 72 bp GTTTCCTCTTCAGCTGCTTCATCGGCCTCTGCTACCTaGTTATTGATAGTACTACTAAGAACTTTAAACCAA +
Preference number: 6 (lower is better)
Translates to: VSSSAASSASAT*LLIVLLRTLNQ
Trigger: TTGGTTTAAAGTTCTTAGTAGTACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8
CDS CAA 72 bp GTTCCTTGTCGAGTTTTCAGCTCAAATACATTCTTCTaGCTCGATTTGTCCTTTGATGCCATTTCAATCACT +
Preference number: 6 (lower is better)
Translates to: VPCRVFSSNTFF*LDLSFDAISIT
Trigger: AGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGAAAACTCGACAAGGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000062584.14
ENSMUST00000077128.13
ENSMUST00000182066.8
ENSMUST00000182213.8
ENSMUST00000182383.8
ENSMUST00000182559.8