Pregenerated sensors for ARFRP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038671Ensembl transcript IDs: ENSMUST00000108808.8, ENSMUST00000127988.8, ENSMUST00000170190.8, ENSMUST00000183499.2, ENSMUST00000185118.8
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCGATGCCCTCTCGAACTCCTTTGCCTGTGAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGGCCAATCTTACAGGTACAGTCACTG | + |
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Preference number: 1 (lower is better) Translates to: SMPSRTPLPVRAEQA*VRQSRRPILQVQSL Trigger: CAGTGACTGTACCTGTAAGATTGGCCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTCGAGAGGGCATCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR TCA 90 bp | GAGGTTGGAGGTCCTTATGTGATGTCCCTCTGCCGTGGTGGCCGGTaGACATTCCGCACGACACACTTCACCATCCATTCGATGCCCTCT | + |
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Preference number: 1 (lower is better) Translates to: EVGGPYVMSLCRGGR*TFRTTHFTIHSMPS Trigger: AGAGGGCATCGAATGGATGGTGAAGTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAAGGACCTCCAACCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR TCA 90 bp | AGCAGAGAATACTCTTCCAACACTAGGAGACGAACAGTCCAAGACTaGGGTTGGAGGTCCTTATGTGATGTCCCTCTGCCGTGGTGGCCG | + |
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Preference number: 1 (lower is better) Translates to: SREYSSNTRRRTVQD*GWRSLCDVPLPWWP Trigger: CGGCCACCACGGCAGAGGGACATCACATAAGGACCTCCAACCTCAGTCTTGGACTGTTCGTCTCCTAGTGTTGGAAGAGTATTCTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR CCA 90 bp | TGGAGAGGCAAGTCTCCACATCCTGCTTGTTGGCCAACACCAGGATaGGAACACCGTCCAGTGCTTCACTCGAAACCACCTTCTCAAATG | + |
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Preference number: 1 (lower is better) Translates to: WRGKSPHPACWPTPG*EHRPVLHSKPPSQM Trigger: CATTTGAGAAGGTGGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTGCCTCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| 3UTR TCA 90 bp | CTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCACACCAGGATaGCCACCACCCATAGGAAGGACTATCTGTTCCCTGTCCACCATA | + |
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Preference number: 1 (lower is better) Translates to: LSSHYASKPASSTPG*PPPIGRTICSLSTI Trigger: TATGGTGGACAGGGAACAGATAGTCCTTCCTATGGGTGGTGGTCATCCTGGTGTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR TCA 90 bp | ACGTCCACAGTGCCAACTGGAAAGAGTACAGAAAGAGCTAGCTCCTaGCCTTTACACACAAGGTTCCAGCTCTCCCCAGGATGGGACAAA | + |
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Preference number: 1 (lower is better) Translates to: TSTVPTGKSTERASS*PLHTRFQLSPGWDK Trigger: TTTGTCCCATCCTGGGGAGAGCTGGAACCTTGTGTGTAAAGGTCAGGAGCTAGCTCTTTCTGTACTCTTTCCAGTTGGCACTGTGGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| 3UTR TCA 90 bp | AACCCTGTTCTGAGAGTGTATCAGAACCTAGTAGAAAACTCAGTGTaGTGCCCACCTGTAATCCCCACAGATATAGGGAAGGAGGCGGAG | + |
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Preference number: 1 (lower is better) Translates to: NPVLRVYQNLVENSV*CPPVIPTDIGKEAE Trigger: CTCCGCCTCCTTCCCTATATCTGTGGGGATTACAGGTGGGCATCACACTGAGTTTTCTACTAGGTTCTGATACACTCTCAGAACAGGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR CCA 90 bp | CAGTCCCAGCATAGCTGCTGCCTCCCCAGGAACCTGCACCTTACATaGAACATATACCTCACACACATCTGGAGATATAGTGAAATCTGT | + |
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Preference number: 1 (lower is better) Translates to: QSQHSCCLPRNLHLT*NIYLTHIWRYSEIC Trigger: ACAGATTTCACTATATCTCCAGATGTGTGTGAGGTATATGTTCCATGTAAGGTGCAGGTTCCTGGGGAGGCAGCAGCTATGCTGGGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR GCA 90 bp | TTCTTCATCAGTGGAATCAATTACATAGATGACACCATGGCACTCTaGATAGTACTTGTCCCACAAAGACTGCAGCTCTTCCTGCCCACC | + |
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Preference number: 1 (lower is better) Translates to: FFISGINYIDDTMAL*IVLVPQRLQLFLPT Trigger: GGTGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAGTACTATGCAGAGTGCCATGGTGTCATCTATGTAATTGATTCCACTGATGAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| 3UTR CCA 90 bp | TTTTATAAAGCTAATCATTTCAGCAAAACAATTACTCTCAAGTTGTaGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: FYKANHFSKTITLKL*EAFIPLCFQASKLH Trigger: GTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGAAATGATTAGCTTTATAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCCAGACCGTCCCTCTGCCGTGGTaGCCGGTGAACATTCCGCAC | + |
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Preference number: 2 (lower is better) Translates to: LGMASCLPVLTRLGGFQTVPLPW*PVNIPH Trigger: GTGCGGAATGTTCACCGGCCACCACGGCAGAGGGAC...GGTCTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTTGGATCGTTGGCGTGCCCCAGATGTCCCTCTGCCGTaGTGGCCGGTGAACATTCCG | + |
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Preference number: 2 (lower is better) Translates to: LSGDGGVGHVDLDRWRAPDVPLP*WPVNIP Trigger: CGGAATGTTCACCGGCCACCACGGCAGAGGGACATC...TGGGGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCCAGACCATCTCTGTCAGGGGATaGAGGTGTAGGGCATGTAGA | + |
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Preference number: 2 (lower is better) Translates to: LGMASCLPVLTRLGGFQTISVRG*RCRACR Trigger: TCTACATGCCCTACACCTCCATCCCCTGACAGAGAT...GGTCTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGGTTGGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGG | + |
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Preference number: 2 (lower is better) Translates to: TRLGGFQTLTCLSGRALNRAEQA*VRQSRR Trigger: CCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCT...ATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR-3UTR GCA 90 bp | AGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCACACCACTAGGCATGGCCTCATaGCTCCCTGTCCTCACAAGG | + |
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Preference number: 2 (lower is better) Translates to: SCGKLSSHYASKPASSTPLGMAS*LPVLTR Trigger: CCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG...TGGTGTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | CTGGGGCTACAGAGAAATCTTGTCTCTTCCACACGTATATCCAACTCCACACAAGAACTCCTTTGCCTGTaGGGGCAGAGCAGGCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: LGLQRNLVSSTRISNSTQELLCL*GQSRPG Trigger: CCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTC...TTGTGTGGAGTTGGATATACGTGTGGAAGAGACAAGATTTCTCTGTAGCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGGGATCTCTGTCAGGGGATaGAGGTGTAGGGCATGTAGA | + |
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Preference number: 2 (lower is better) Translates to: RVPDPDMSIRQGSKSLSGISVRG*RCRACR Trigger: TCTACATGCCCTACACCTCCATCCCCTGACAGAGAT...CCCTGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTTCTCCATGGGCAAGCTGGACAAAACAGCTAGCTGTCACAGGAACAACCCCATCTCTGTCAGGGGATaGAGGTGTAGGGCATGTAGA | + |
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Preference number: 2 (lower is better) Translates to: TFSMGKLDKTASCHRNNPISVRG*RCRACR Trigger: TCTACATGCCCTACACCTCCATCCCCTGACAGAGAT...GGGGTTGTTCCTGTGACAGCTAGCTGTTTTGTCCAGCTTGCCCATGGAGAAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | CAACACCAGGATGGGAACACCGTCCAGTGCTTCACTCGAAACCACCTTCTCAAACAGCTCTCCCCAGGATaGGACAAACCATTCTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: QHQDGNTVQCFTRNHLLKQLSPG*DKPFWY Trigger: GTACCAGAATGGTTTGTCCCATCCTGGGGAGAGCTG...TTTGAGAAGGTGGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| 3UTR-3UTR TCA 90 bp | CACATCTGGAGATATAGTGAAATCTGTGTCCTTGGGATACCACACAACCTGTATTGCCGTGGTGGCCGGTaGACATTCCGCACGACACAC | + |
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Preference number: 2 (lower is better) Translates to: HIWRYSEICVLGIPHNLYCRGGR*TFRTTH Trigger: GTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCA...ATACAGGTTGTGTGGTATCCCAAGGACACAGATTTCACTATATCTCCAGATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR CAA 90 bp | GGCTCTAAATCTCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTaGGATCGTTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACT | + |
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Preference number: 2 (lower is better) Translates to: GSKSLSGDGGVGHVD*DRWRAPCLSLNTYT Trigger: AGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGAGATTTAGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCACCCACTAGATTTTTCTTaGACCGGTGGCTTAGCCACA | + |
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Preference number: 2 (lower is better) Translates to: LKLWEAFIPLCFQASKLHPLDFS*TGGLAT Trigger: TGTGGCTAAGCCACCGGTTCAAGAAAAATCTAGTGG...GTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCACACCATGCAGGACAGTTCCTTaGATCAGTATCTATCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: SCGKLSSHYASKPASSTPCRTVP*ISIYPL Trigger: GAGGGGATAGATACTGATTCAAGGAACTGTCCTGCA...TGGTGTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | ACTCCACACAAAACAACTAGGGGCCATGCTGGTCTCAGATGTGGGTTCTTTCTCTCTCCATGGGCAAGCTaGACAAAACAGCTAGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: TPHKTTRGHAGLRCGFFLSPWAS*TKQLAV Trigger: GACAGCTAGCTGTTTTGTCCAGCTTGCCCATGGAGA...GAGAAAGAACCCACATCTGAGACCAGCATGGCCCCTAGTTGTTTTGTGTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGTGTTGACAAAACTGAGTAAAGATGGCCAGAAAGACACCAGTGATATCTTGCTAGGCATGGCCTCATaGCTCCCTGTCCTCACAAGG | + |
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Preference number: 2 (lower is better) Translates to: PVLTKLSKDGQKDTSDILLGMAS*LPVLTR Trigger: CCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG...CAAGATATCACTGGTGTCTTTCTGGCCATCTTTACTCAGTTTTGTCAACACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGTATATGGGTGTACTGAAACACACACCAGTAAGATCAGCTCTCTCCTTAGGGGTTCTTTCTCCAAGTaGGGTAAGCCTTGGCCATTC | + |
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Preference number: 2 (lower is better) Translates to: PVYGCTETHTSKISSLLRGSFSK*GKPWPF Trigger: GAATGGCCAAGGCTTACCTCACTTGGAGAAAGAACC...CCTAAGGAGAGAGCTGATCTTACTGGTGTGTGTTTCAGTACACCCATATACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGAAATCTCTGTCAGGGGATaGAGGTGTAGGGCATGTAGA | + |
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Preference number: 2 (lower is better) Translates to: LACPMFVSEYLHFSRHREISVRG*RCRACR Trigger: TCTACATGCCCTACACCTCCATCCCCTGACAGAGAT...TTCTCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAAAGCAAATAAAAGAATaGACAGACAAAGGCAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: GRVPDPDMSIRQGSKSLSKQIKE*TDKGSS Trigger: TGAGCTGCCTTTGTCTGTTCATTCTTTTATTTGCTT...TGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | TCAACCCCCAGTGTCAGTAGGATAGAAGCCAGCAGAGAATACTCTTCCAACACTCCCCATGTTTGTCTCTaGATACCTACACTTTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: STPSVSRIEASREYSSNTPHVCL*IPTLFQ Trigger: CTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGG...AGTGTTGGAAGAGTATTCTCTGCTGGCTTCTATCCTACTGACACTGGGGGTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGGGCTACAGAGAAATCTTGTCTCTTCCACACGTATATCCAACTCCACACAATGCTGGTCTCAGATGTaGGTTCTTTCTCCAAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: LGLQRNLVSSTRISNSTQCWSQM*VLSPSE Trigger: CTCACTTGGAGAAAGAACCCACATCTGAGACCAGCA...TTGTGTGGAGTTGGATATACGTGTGGAAGAGACAAGATTTCTCTGTAGCCCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGTTGGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTAAGCAAATAAAAGAATaGACAGACAAAGGCAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: KVGRVPDPDMSIRQGSKSKQIKE*TDKGSS Trigger: TGAGCTGCCTTTGTCTGTTCATTCTTTTATTTGCTT...AGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | GACACCTATGTGCAGGACAGTTCCTTGAATCAGTATCTATCCCCTCCTGATTTTAACTCCAAACCTCCCTaGAGAGAACCCTACTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: DTYVQDSSLNQYLSPPDFNSKPP*REPYSE Trigger: TTCTGAGTAGGGTTCTCTTCAGGGAGGTTTGGAGTT...AAAATCAGGAGGGGATAGATACTGATTCAAGGAACTGTCCTGCACATAGGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGCAAAACAATTACTCTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCCCCACTAGATTTTTCTTaGACCGGTGGCTTAGCCACA | + |
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Preference number: 2 (lower is better) Translates to: SAKQLLSSCGKLSSHYASPLDFS*TGGLAT Trigger: TGTGGCTAAGCCACCGGTTCAAGAAAAATCTAGTGG...GGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGAAAAGCAAATAAAAGAATaGACAGACAAAGGCAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: LACPMFVSEYLHFSRHREKQIKE*TDKGSS Trigger: TGAGCTGCCTTTGTCTGTTCATTCTTTTATTTGCTT...TTCTCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CCA 90 bp | GACACCTATGTGCAGGACAGTTCCTTGAATCAGTATCTATCCCCTCCTGATTTTTACCTCACACACATCTaGAGATATAGTGAAATCTGT | + |
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Preference number: 2 (lower is better) Translates to: DTYVQDSSLNQYLSPPDFYLTHI*RYSEIC Trigger: ACAGATTTCACTATATCTCCAGATGTGTGTGAGGTA...AAAATCAGGAGGGGATAGATACTGATTCAAGGAACTGTCCTGCACATAGGTGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR TCA 90 bp | TATACCTCACACACATCTGGAGATATAGTGAAATCTGTGTCCTTGGGATACCACAAGCAAATAAAAGAATaGACAGACAAAGGCAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: YTSHTSGDIVKSVSLGYHKQIKE*TDKGSS Trigger: TGAGCTGCCTTTGTCTGTTCATTCTTTTATTTGCTT...GTGGTATCCCAAGGACACAGATTTCACTATATCTCCAGATGTGTGTGAGGTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR CAA 90 bp | ACTTTTTATAAAGCTAATCATTTCAGCAAAACAATTACTCTCAAGTaGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: TFYKANHFSKTITLK*WEAFIPLCFQASKL Trigger: GAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGAAATGATTAGCTTTATAAAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR GCA 72 bp | AGTAGGTCTAGTGGGCATGGCCAGTCCCAGCATAGCTaGTGCCTCCCCAGGAACCTGCACCTTACATGGAAC | + |
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Preference number: 3 (lower is better) Translates to: SRSSGHGQSQHS*CLPRNLHLTWN Trigger: GTTCCATGTAAGGTGCAGGTTCCTGGGGAGGCAGCAGCTATGCTGGGACTGGCCATGCCCACTAGACCTACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR TCA 72 bp | GGTCCTTATGTGATGTCCCTCTGCCGTGGTGGCCGGTaGACATTCCGCACGACACACTTCACCATCCATTCG | + |
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Preference number: 3 (lower is better) Translates to: GPYVMSLCRGGR*TFRTTHFTIHS Trigger: CGAATGGATGGTGAAGTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAAGGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR CCA 72 bp | TCTCGAACTCCTTTGCCTGTGAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGGCCAATCTTACAGGTA | + |
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Preference number: 3 (lower is better) Translates to: SRTPLPVRAEQA*VRQSRRPILQV Trigger: TACCTGTAAGATTGGCCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTCGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR CCA 72 bp | GGTTGGAGGTCCTTATGTGATGTCCCTCTGCCGTGGTaGCCGGTGAACATTCCGCACGACACACTTCACCAT | + |
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Preference number: 3 (lower is better) Translates to: GWRSLCDVPLPW*PVNIPHDTLHH Trigger: ATGGTGAAGTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAAGGACCTCCAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR TCA 72 bp | ACGAACAGTCCAAGACTGAGGTTGGAGGTCCTTATGTaGTGTCCCTCTGCCGTGGTGGCCGGTGAACATTCC | + |
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Preference number: 3 (lower is better) Translates to: TNSPRLRLEVLM*CPSAVVAGEHS Trigger: GGAATGTTCACCGGCCACCACGGCAGAGGGACATCACATAAGGACCTCCAACCTCAGTCTTGGACTGTTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| 3UTR CCA 72 bp | AAGCCTTGGCCATTCCCACCTTCTCCATGGGCAAGCTaGACAAAACAGCTAGCTGTCACAGGAACAACCCCC | + |
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Preference number: 3 (lower is better) Translates to: KPWPFPPSPWAS*TKQLAVTGTTP Trigger: GGGGGTTGTTCCTGTGACAGCTAGCTGTTTTGTCCAGCTTGCCCATGGAGAAGGTGGGAATGGCCAAGGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR-3UTR CAA 90 bp | GACACCTATGTGCAGGACAGTTCCTTGAATCAGTATCTATCCCCTCCTGATTTTCCTGTCCTCACAAGGTaGGGAGGGTTCCAGACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: DTYVQDSSLNQYLSPPDFPVLTR*GGFQTL Trigger: CAGGGTCTGGAACCCTCCCAACCTTGTGAGGACAGG...AAAATCAGGAGGGGATAGATACTGATTCAAGGAACTGTCCTGCACATAGGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR TCA 72 bp | TTGAACCGGTGGCTTAGCCACAACTCCAAACCTCCCTaGAGAGAACCCTACTCAGAAGGTACTCCAGAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LNRWLSHNSKPP*REPYSEGTPEE Trigger: CTCTTCTGGAGTACCTTCTGAGTAGGGTTCTCTTCAGGGAGGTTTGGAGTTGTGGCTAAGCCACCGGTTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR TCA 72 bp | GTGCCAACTGGAAAGAGTACAGAAAGAGCTAGCTCCTaGCCTTTACACACAAGGTTCCAGCTCTCCCCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: VPTGKSTERASS*PLHTRFQLSPG Trigger: TCCTGGGGAGAGCTGGAACCTTGTGTGTAAAGGTCAGGAGCTAGCTCTTTCTGTACTCTTTCCAGTTGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| 3UTR GCA 72 bp | CTTGTTGGCCAACACCAGGATGGGAACACCGTCCAGTaGTTCACTCGAAACCACCTTCTCAAATGCCTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: LVGQHQDGNTVQ*FTRNHLLKCLF Trigger: AAAGAGGCATTTGAGAAGGTGGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| 3UTR-3UTR CAA 90 bp | CCAGTGTTGACAAAACTGAGTAAAGATGGCCAGAAAGACACCAGTGATATCTTGCCTGTCCTCACAAGGTaGGGAGGGTTCCAGACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PVLTKLSKDGQKDTSDILPVLTR*GGFQTL Trigger: CAGGGTCTGGAACCCTCCCAACCTTGTGAGGACAGG...CAAGATATCACTGGTGTCTTTCTGGCCATCTTTACTCAGTTTTGTCAACACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGCACCTTACATGGAACATATACCTCACACACATCTGGAGATATAGTGAAATCCCTGTCCTCACAAGGTaGGGAGGGTTCCAGACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: LHLTWNIYLTHIWRYSEIPVLTR*GGFQTL Trigger: CAGGGTCTGGAACCCTCCCAACCTTGTGAGGACAGG...GATTTCACTATATCTCCAGATGTGTGTGAGGTATATGTTCCATGTAAGGTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR CCA 72 bp | ATCCCCACAGATATAGGGAAGGAGGCGGAGATTAACTaGGGCTACAGAGAAATCTTGTCTCTTCCACACGTA | + |
|
Preference number: 3 (lower is better) Translates to: IPTDIGKEAEIN*GYREILSLPHV Trigger: TACGTGTGGAAGAGACAAGATTTCTCTGTAGCCCCAGTTAATCTCCGCCTCCTTCCCTATATCTGTGGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTGAAGTTCAGGACCAGGCACCATTGCCACAATTGTTTCAGTTGCTGATGAAGGTGAAATCTGTGTCCTaGGGATACCACACAACCTGT | + |
|
Preference number: 3 (lower is better) Translates to: SEVQDQAPLPQLFQLLMKVKSVS*GYHTTC Trigger: ACAGGTTGTGTGGTATCCCAAGGACACAGATTTCAC...CTTCATCAGCAACTGAAACAATTGTGGCAATGGTGCCTGGTCCTGAACTTCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170190.8 |
||
| 3UTR TCA 72 bp | CTGAGAGTGTATCAGAACCTAGTAGAAAACTCAGTGTaGTGCCCACCTGTAATCCCCACAGATATAGGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: LRVYQNLVENSV*CPPVIPTDIGK Trigger: CTTCCCTATATCTGTGGGGATTACAGGTGGGCATCACACTGAGTTTTCTACTAGGTTCTGATACACTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR TCA 72 bp | ACTGCTAGCCTGGACAATAGGGAACCACCATCTAACTaGTTGAAGGGATGGTTAGACAGGCAGCCTTTATTT | + |
|
Preference number: 3 (lower is better) Translates to: TASLDNREPPSN*LKGWLDRQPLF Trigger: AAATAAAGGCTGCCTGTCTAACCATCCCTTCAATCAGTTAGATGGTGGTTCCCTATTGTCCAGGCTAGCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR GCA 72 bp | AGTGGAATCAATTACATAGATGACACCATGGCACTCTaGATAGTACTTGTCCCACAAAGACTGCAGCTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: SGINYIDDTMAL*IVLVPQRLQLF Trigger: GAAGAGCTGCAGTCTTTGTGGGACAAGTACTATGCAGAGTGCCATGGTGTCATCTATGTAATTGATTCCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| 3UTR CCA 72 bp | CTGCACCTTACATGGAACATATACCTCACACACATCTaGAGATATAGTGAAATCTGTGTCCTTGGGATACCA | + |
|
Preference number: 3 (lower is better) Translates to: LHLTWNIYLTHI*RYSEICVLGIP Trigger: TGGTATCCCAAGGACACAGATTTCACTATATCTCCAGATGTGTGTGAGGTATATGTTCCATGTAAGGTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR CCA 72 bp | GCTAATCATTTCAGCAAAACAATTACTCTCAAGTTGTaGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGC | + |
|
Preference number: 3 (lower is better) Translates to: ANHFSKTITLKL*EAFIPLCFQAS Trigger: GCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGAAATGATTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| 3UTR GCA 72 bp | ATGTACAGATTTCCTTGTGACTGGCTAACTCTTTACTaGACACAGGACTTTATTCTACGCTTGCAGTCAATG | + |
|
Preference number: 3 (lower is better) Translates to: MYRFPCDWLTLY*TQDFILRLQSM Trigger: CATTGACTGCAAGCGTAGAATAAAGTCCTGTGTGCAGTAAAGAGTTAGCCAGTCACAAGGAAATCTGTACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170190.8 |
||
| CDS-3UTR CCA 90 bp | GGCCTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCCAGAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: GLGMASCLPVLTRLGGFQRAEQA*VRQSRR Trigger: CCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCT...CTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR TCA 90 bp | ACAGGCCTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCTGCCGTGGTGGCCGGTaGACATTCCGCACGACACAC | + |
|
Preference number: 4 (lower is better) Translates to: TGLGMASCLPVLTRLGGFCRGGR*TFRTTH Trigger: GTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCA...GAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAGGCCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR CCA 90 bp | TCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTTGGATCGTTGGCGTGCCCCGATGTCCCTCTGCCGTaGTGGCCGGTGAACATTCCG | + |
|
Preference number: 4 (lower is better) Translates to: SVRGWRCRACRFGSLACPDVPLP*WPVNIP Trigger: CGGAATGTTCACCGGCCACCACGGCAGAGGGACATC...GGGGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | CTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCCAGACCCAAGTCTCCACATCCTaGTTGTTGGCCAACACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LGMASCLPVLTRLGGFQTQVSTS*LLANTR Trigger: CCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTG...GGTCTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| 3UTR CAA 72 bp | CTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTaGGGAGGGTTCCAGACCCTGACATGTCTATCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LGMASCLPVLTR*GGFQTLTCLSG Trigger: GCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| CDS-3UTR CCA 90 bp | ACAAGGTTGGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATGTCCCTCTGCCGTGGTaGCCGGTGAACATTCCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TRLGGFQTLTCLSGRALNVPLPW*PVNIPH Trigger: GTGCGGAATGTTCACCGGCCACCACGGCAGAGGGAC...ATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR CCA 90 bp | AGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGGGGATGTCCCTCTGCCGTaGTGGCCGGTGAACATTCCG | + |
|
Preference number: 4 (lower is better) Translates to: RVPDPDMSIRQGSKSLSGDVPLP*WPVNIP Trigger: CGGAATGTTCACCGGCCACCACGGCAGAGGGACATC...CCCTGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR TCA 90 bp | ACTCTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCTGCCGTGGTGGCCGGTaGACATTCCGCACGACACAC | + |
|
Preference number: 4 (lower is better) Translates to: TLKLWEAFIPLCFQASKLCRGGR*TFRTTH Trigger: GTGTGTCGTGCGGAATGTTCACCGGCCACCACGGCA...GAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | TCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTTGGATCGTTGGCGTGCCCCCAAGTCTCCACATCCTaGTTGTTGGCCAACACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SVRGWRCRACRFGSLACPQVSTS*LLANTR Trigger: CCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTG...GGGGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| 3UTR CAA 72 bp | TCAGGAATGGAGAGGCAAGTCTCCACATCCTGCTTGTaGGCCAACACCAGGATGGGAACACCGTCCAGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SGMERQVSTSCL*ANTRMGTPSSA Trigger: AGCACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTGCCTCTCCATTCCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| CDS-3UTR TCA 90 bp | TCGTTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGAACTCCTTTGCCTGTaGGGGCAGAGCAGGCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLACPMFVSEYLHFSRHRELLCL*GQSRPG Trigger: CCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTC...TCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | TCTCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTTGGATCGTTGGCGTGCCCAAGTCTCCACATCCTaGTTGTTGGCCAACACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLSGDGGVGHVDLDRWRAQVSTS*LLANTR Trigger: CCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTG...GGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| 3UTR CAA 72 bp | ATGTCAGGAATGGAGAGGCAAGTCTCCACATCCTGCTaGTTGGCCAACACCAGGATGGGAACACCGTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: MSGMERQVSTSC*LANTRMGTPSS Trigger: ACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTGCCTCTCCATTCCTGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| CDS-3UTR TCA 90 bp | TTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGAAGAACTCCTTTGCCTGTaGGGGCAGAGCAGGCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LACPMFVSEYLHFSRHREELLCL*GQSRPG Trigger: CCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTC...TTCTCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | GGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGACTGCAGCTCTTCCTaGCCACCTAAGTCCCAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: GRVPDPDMSIRQGSKSLSDCSSS*PPKSQN Trigger: GTTTTGGGACTTAGGTGGGCAGGAAGAGCTGCAGTC...TGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| CDS-3UTR CCA 90 bp | TTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGAAAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: LACPMFVSEYLHFSRHRERAEQA*VRQSRR Trigger: CCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCT...TTCTCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR TCA 90 bp | GACACCTATGTGCAGGACAGTTCCTTGAATCAGTATCTATCCCCTCCTGATTTTGAACTCCTTTGCCTGTaGGGGCAGAGCAGGCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: DTYVQDSSLNQYLSPPDFELLCL*GQSRPG Trigger: CCCAGGCCTGCTCTGCCCTCACAGGCAAAGGAGTTC...AAAATCAGGAGGGGATAGATACTGATTCAAGGAACTGTCCTGCACATAGGTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | GGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGGCCCAGGATCAGGATaGAGTATTCATCCTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: GRVPDPDMSIRQGSKSLSGPGSG*SIHPSG Trigger: TCCAGAAGGATGAATACTGCATCCTGATCCTGGGCC...TGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000185118.8 |
||
| CDS-3UTR CCA 90 bp | TATACCTCACACACATCTGGAGATATAGTGAAATCTGTGTCCTTGGGATACCACAGGGCAGAGCAGGCCTaGGTCAGACAATCTCGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: YTSHTSGDIVKSVSLGYHRAEQA*VRQSRR Trigger: CCGGCGAGATTGTCTGACCCAGGCCTGCTCTGCCCT...GTGGTATCCCAAGGACACAGATTTCACTATATCTCCAGATGTGTGTGAGGTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| 3UTR CAA 72 bp | TCTCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTaGGATCGTTGGCGTGCCCCATGTTTGTCTCTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: SLSGDGGVGHVD*DRWRAPCLSLN Trigger: ATTCAGAGACAAACATGGGGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| CDS-3UTR TCA 90 bp | TGCTTGTTGGCCAACACCAGGATGGGAACACCGTCCAGTGCTTCACTCGAAACCGTTAAAGCGTGTTTTTaGCTGTTCCAGGAAAGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: CLLANTRMGTPSSASLETVKACF*LFQESR Trigger: ACGACTTTCCTGGAACAGTCAAAAACACGCTTTAAC...GGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTTGGCCAACAAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| CDS-3UTR TCA 90 bp | TCTCTGTCAGGGGATGGAGGTGTAGGGCATGTAGATTTGGATCGTTGGCGTGCCGTTAAAGCGTGTTTTTaGCTGTTCCAGGAAAGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SLSGDGGVGHVDLDRWRAVKACF*LFQESR Trigger: ACGACTTTCCTGGAACAGTCAAAAACACGCTTTAAC...GGCACGCCAACGATCCAAATCTACATGCCCTACACCTCCATCCCCTGACAGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000185118.8 |
||
| CDS-3UTR GCA 90 bp | AACACCAGGATGGGAACACCGTCCAGTGCTTCACTCGAAACCACCTTCTCAAATGGCCCAGGATCAGGATaGAGTATTCATCCTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: NTRMGTPSSASLETTFSNGPGSG*SIHPSG Trigger: TCCAGAAGGATGAATACTGCATCCTGATCCTGGGCC...ATTTGAGAAGGTGGTTTCGAGTGAAGCACTGGACGGTGTTCCCATCCTGGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
||
| CDS-3UTR GCA 90 bp | ACTCCACACAAAACAACTAGGGGCCATGCTGGTCTCAGATGTGGGTTCTTTCTCGGCCCAGGATCAGGATaGAGTATTCATCCTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TPHKTTRGHAGLRCGFFLGPGSG*SIHPSG Trigger: TCCAGAAGGATGAATACTGCATCCTGATCCTGGGCC...GAGAAAGAACCCACATCTGAGACCAGCATGGCCCCTAGTTGTTTTGTGTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000185118.8 |
||
| CDS-3UTR TCA 90 bp | GGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGTTAAAGCGTGTTTTTaGCTGTTCCAGGAAAGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: GRVPDPDMSIRQGSKSLSVKACF*LFQESR Trigger: ACGACTTTCCTGGAACAGTCAAAAACACGCTTTAAC...TGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000185118.8 |
||
| CDS-3UTR TCA 90 bp | TCGTTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGACTAAGTCCCAAAACATaGGACGAGCCTTTCCCACGT | + |
|
Preference number: 4 (lower is better) Translates to: SLACPMFVSEYLHFSRHRLSPKT*DEPFPR Trigger: ACGTGGGAAAGGCTCGTCTCATGTTTTGGGACTTAG...TCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAACGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| CDS-3UTR CCA 90 bp | TTCAGCAAAACAATTACTCTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCGATGTCCCTCTGCCGTaGTGGCCGGTGAACATTCCG | + |
|
Preference number: 4 (lower is better) Translates to: FSKTITLKLWEAFIPLCFDVPLP*WPVNIP Trigger: CGGAATGTTCACCGGCCACCACGGCAGAGGGACATC...GAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| 3UTR CAA 72 bp | GGGCATGTAGATTTGGATCGTTGGCGTGCCCCATGTTaGTCTCTGAATACCTACACTTTTCCAGACACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: GHVDLDRWRAPC*SLNTYTFPDTE Trigger: CTCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAACGATCCAAATCTACATGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
||
| CDS-3UTR GCA 90 bp | ACAAGGTTGGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATGGTACAGTCACTGAATaGAGTCTTGATGTCAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: TRLGGFQTLTCLSGRALNGTVTE*SLDVRN Trigger: ATTCCTGACATCAAGACTGCATTCAGTGACTGTACC...ATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
||
| CDS-3UTR GCA 90 bp | CCAGTGTTGACAAAACTGAGTAAAGATGGCCAGAAAGACACCAGTGATATCTTGGGCCCAGGATCAGGATaGAGTATTCATCCTTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PVLTKLSKDGQKDTSDILGPGSG*SIHPSG Trigger: TCCAGAAGGATGAATACTGCATCCTGATCCTGGGCC...CAAGATATCACTGGTGTCTTTCTGGCCATCTTTACTCAGTTTTGTCAACACTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| CDS-3UTR GCA 90 bp | TCAACCCCCAGTGTCAGTAGGATAGAAGCCAGCAGAGAATACTCTTCCAACACTGGTACAGTCACTGAATaGAGTCTTGATGTCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: STPSVSRIEASREYSSNTGTVTE*SLDVRN Trigger: ATTCCTGACATCAAGACTGCATTCAGTGACTGTACC...AGTGTTGGAAGAGTATTCTCTGCTGGCTTCTATCCTACTGACACTGGGGGTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR GCA 90 bp | CCCCAGGAACCTGCACCTTACATGGAACATATACCTCACACACATCTGGAGATAGGTACAGTCACTGAATaGAGTCTTGATGTCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: PQEPAPYMEHIPHTHLEIGTVTE*SLDVRN Trigger: ATTCCTGACATCAAGACTGCATTCAGTGACTGTACC...TATCTCCAGATGTGTGTGAGGTATATGTTCCATGTAAGGTGCAGGTTCCTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| 3UTR CAA 72 bp | AAGGAGGCGGAGATTAACTGGGGCTACAGAGAAATCTaGTCTCTTCCACACGTATATCCAACTCCACACAAA | + |
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Preference number: 4 (lower is better) Translates to: KEAEINWGYREI*SLPHVYPTPHK Trigger: TTTGTGTGGAGTTGGATATACGTGTGGAAGAGACAAGATTTCTCTGTAGCCCCAGTTAATCTCCGCCTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| 3UTR CAA 72 bp | TGCTCTAACTTTAGTGAAGTTCAGGACCAGGCACCATaGCCACAATTGTTTCAGTTGCTGATGAAGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: CSNFSEVQDQAP*PQLFQLLMKGR Trigger: CCTACCCTTCATCAGCAACTGAAACAATTGTGGCAATGGTGCCTGGTCCTGAACTTCACTAAAGTTAGAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170190.8 |
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| CDS-3UTR TCA 90 bp | CCTGTATATGGGTGTACTGAAACACACACCAGTAAGATCAGCTCTCTCCTTAGGGTTAAAGCGTGTTTTTaGCTGTTCCAGGAAAGTCGT | + |
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Preference number: 4 (lower is better) Translates to: PVYGCTETHTSKISSLLRVKACF*LFQESR Trigger: ACGACTTTCCTGGAACAGTCAAAAACACGCTTTAAC...CCTAAGGAGAGAGCTGATCTTACTGGTGTGTGTTTCAGTACACCCATATACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| 3UTR CAA 72 bp | GTGCTTCACTCGAAACCACCTTCTCAAATGCCTCTTTaGATTCTGACAGCCTTTCTTCATCAGTGGAATCAA | + |
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Preference number: 4 (lower is better) Translates to: VLHSKPPSQMPL*ILTAFLHQWNQ Trigger: TTGATTCCACTGATGAAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGAGAAGGTGGTTTCGAGTGAAGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| 3UTR CAA 72 bp | AAAGCTAATCATTTCAGCAAAACAATTACTCTCAAGTaGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: KANHFSKTITLK*WEAFIPLCFQA Trigger: GGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGTAATTGTTTTGCTGAAATGATTAGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | TGTCAGGAATGGAGAGGCAAGTCTCCACATCCTGCTTGTTGGCCAACACCAGGAGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: CQEWRGKSPHPACWPTPGVVFPA*SRPRIR Trigger: CCTGATCCTGGGCCTGGACAATGCTGGGAAGACGAC...TCCTGGTGTTGGCCAACAAGCAGGATGTGGAGACTTGCCTCTCCATTCCTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183499.2 |
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| CDS-3UTR CAA 90 bp | CTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCCACGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: LKLWEAFIPLCFQASKLHVVFPA*SRPRIR Trigger: CCTGATCCTGGGCCTGGACAATGCTGGGAAGACGAC...GTGGAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | CTAGGCATGGCCTCATGCCTCCCTGTCCTCACAAGGTTGGGAGGGTTCCAGACCACGGTAGTGGTGATTTaGGATAGACTCATCCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: LGMASCLPVLTRLGGFQTTVVVI*DRLIPL Trigger: CAAGGGGATGAGTCTATCCAAAATCACCACTACCGT...GGTCTGGAACCCTCCCAACCTTGTGAGGACAGGGAGGCATGAGGCCATGCCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | TCGTTGGCGTGCCCCATGTTTGTCTCTGAATACCTACACTTTTCCAGACACAGAGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: SLACPMFVSEYLHFSRHRVVFPA*SRPRIR Trigger: CCTGATCCTGGGCCTGGACAATGCTGGGAAGACGAC...TCTGTGTCTGGAAAAGTGTAGGTATTCAGAGACAAACATGGGGCACGCCAACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | ACAAGGTTGGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATTCCACATCCTGCTTGTaGGCCAACACCAGGATGGGA | + |
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Preference number: 5 (lower is better) Translates to: TRLGGFQTLTCLSGRALNSTSCL*ANTRMG Trigger: TCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGA...ATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCCAACCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR CAA 90 bp | CCTGTATATGGGTGTACTGAAACACACACCAGTAAGATCAGCTCTCTCCTTAGGGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: PVYGCTETHTSKISSLLRVVFPA*SRPRIR Trigger: CCTGATCCTGGGCCTGGACAATGCTGGGAAGACGAC...CCTAAGGAGAGAGCTGATCTTACTGGTGTGTGTTTCAGTACACCCATATACAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | ACTCTCAAGTTGTGGGAAGCTTTCATCCCACTATGCTTCCAAGCCAGCAAGCTCTCCACATCCTGCTTGTaGGCCAACACCAGGATGGGA | + |
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Preference number: 5 (lower is better) Translates to: TLKLWEAFIPLCFQASKLSTSCL*ANTRMG Trigger: TCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGA...GAGCTTGCTGGCTTGGAAGCATAGTGGGATGAAAGCTTCCCACAACTTGAGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR CAA 90 bp | GACACCTATGTGCAGGACAGTTCCTTGAATCAGTATCTATCCCCTCCTGATTTTTCCACATCCTGCTTGTaGGCCAACACCAGGATGGGA | + |
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Preference number: 5 (lower is better) Translates to: DTYVQDSSLNQYLSPPDFSTSCL*ANTRMG Trigger: TCCCATCCTGGTGTTGGCCAACAAGCAGGATGTGGA...AAAATCAGGAGGGGATAGATACTGATTCAAGGAACTGTCCTGCACATAGGTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR CAA 90 bp | AGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAGGGTCTCAAATGCCTCTTTaGATTCTGACAGCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: RVPDPDMSIRQGSKSLSGSQMPL*ILTAFL Trigger: AAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGAGA...CCCTGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR CAA 90 bp | GGGAGGGTTCCAGACCCTGACATGTCTATCAGGCAGGGCTCTAAATCTCTGTCAAGTCAAATGCCTCTTTaGATTCTGACAGCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GRVPDPDMSIRQGSKSLSSQMPL*ILTAFL Trigger: AAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGACT...TGACAGAGATTTAGAGCCCTGCCTGATAGACATGTCAGGGTCTGGAACCCTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185118.8 |
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| CDS-3UTR CAA 90 bp | CCAACTCCACACAAAACAACTAGGGGCCATGCTGGTCTCAGATGTGGGTTCTTTTCTCAAATGCCTCTTTaGATTCTGACAGCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PTPHKTTRGHAGLRCGFFSQMPL*ILTAFL Trigger: AAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGAGA...AAAGAACCCACATCTGAGACCAGCATGGCCCCTAGTTGTTTTGTGTGGAGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS-3UTR CAA 90 bp | CCCCAGGAACCTGCACCTTACATGGAACATATACCTCACACACATCTGGAGATATCTCAAATGCCTCTTTaGATTCTGACAGCCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PQEPAPYMEHIPHTHLEISQMPL*ILTAFL Trigger: AAGAAAGGCTGTCAGAATCAAAAGAGGCATTTGAGA...TATCTCCAGATGTGTGTGAGGTATATGTTCCATGTAAGGTGCAGGTTCCTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127988.8 ENSMUST00000170190.8 |
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| CDS CAA 72 bp | GTTTTTGACTGTTCCAGGAAAGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGGATGCAGTATTCATCC | + |
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Preference number: 6 (lower is better) Translates to: VFDCSRKVVFPA*SRPRIRMQYSS Trigger: GGATGAATACTGCATCCTGATCCTGGGCCTGGACAATGCTGGGAAGACGACTTTCCTGGAACAGTCAAAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000183499.2 ENSMUST00000185118.8 |
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| CDS GCA 72 bp | TCGTCTTCCCAGCATTGTCCAGGCCCAGGATCAGGATaGAGTATTCATCCTTCTGGAACATGTACTTGTACA | + |
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Preference number: 6 (lower is better) Translates to: SSSQHCPGPGSG*SIHPSGTCTCT Trigger: TGTACAAGTACATGTTCCAGAAGGATGAATACTGCATCCTGATCCTGGGCCTGGACAATGCTGGGAAGACGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000183499.2 ENSMUST00000185118.8 |
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| CDS CAA 90 bp | TTAAAGCGTGTTTTTGACTGTTCCAGGAAAGTCGTCTTCCCAGCATaGTCCAGGCCCAGGATCAGGATGCAGTATTCATCCTTCTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: LKRVFDCSRKVVFPA*SRPRIRMQYSSFWN Trigger: GTTCCAGAAGGATGAATACTGCATCCTGATCCTGGGCCTGGACAATGCTGGGAAGACGACTTTCCTGGAACAGTCAAAAACACGCTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000183499.2 ENSMUST00000185118.8 |
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| CDS TCA 72 bp | ACTCATCCCCTTGTAGTTCTTGTTAAAGCGTGTTTTTaGCTGTTCCAGGAAAGTCGTCTTCCCAGCATTGTC | + |
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Preference number: 6 (lower is better) Translates to: THPLVVLVKACF*LFQESRLPSIV Trigger: GACAATGCTGGGAAGACGACTTTCCTGGAACAGTCAAAAACACGCTTTAACAAGAACTACAAGGGGATGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000108808.8 ENSMUST00000127988.8 ENSMUST00000183499.2 ENSMUST00000185118.8 |
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