Pregenerated sensors for ARFIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074513Ensembl transcript IDs: ENSMUST00000098990.10, ENSMUST00000107687.9, ENSMUST00000143514.3
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCACACTCTGGGGAATGTAAATAACCATCACAAGTTACTCTGCTaGGAGAATAAAATGAAGCTCTCTCAGAGCACACATACACAGGAG | + |
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Preference number: 1 (lower is better) Translates to: RHTLGNVNNHHKLLC*ENKMKLSQSTHTQE Trigger: CTCCTGTGTATGTGTGCTCTGAGAGAGCTTCATTTTATTCTCCCAGCAGAGTAACTTGTGATGGTTATTTACATTCCCCAGAGTGTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 90 bp | ATTACTGCATCGGAGAAGGCACGTATCTGTGATTTAAGGCTTAACTaGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTC | + |
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Preference number: 1 (lower is better) Translates to: ITASEKARICDLRLN*YSHAWKPMNTVWKF Trigger: GAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAGCCTTAAATCACAGATACGTGCCTTCTCCGATGCAGTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 90 bp | AAGGCACGTATCTGTGATTTAAGGCTTAACTGGTATAGTCACGCATaGAAGCCAATGAACACAGTCTGGAAATTCTCTTCTATCAAAACG | + |
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Preference number: 1 (lower is better) Translates to: KARICDLRLNWYSHA*KPMNTVWKFSSIKT Trigger: CGTTTTGATAGAAGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAGCCTTAAATCACAGATACGTGCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 90 bp | AATCAAATGTTATCCATAGGGGTTTCCTCATGTATGTACAATGGTTaGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTA | + |
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Preference number: 1 (lower is better) Translates to: NQMLSIGVSSCMYNG*ARITASEKARICDL Trigger: TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAGGAAACCCCTATGGATAACATTTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR-3UTR CCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACATGTAAACCTCCCTTaGAAAACTATAGCTGGCCCT | + |
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Preference number: 2 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKHVNLP*KTIAGP Trigger: AGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATG...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| 3UTR-3UTR TCA 90 bp | TACAATGGTTGGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTAACACGTCATAAAATATaGCTGTGTGATTCCCGGACC | + |
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Preference number: 2 (lower is better) Translates to: YNGWARITASEKARICDLTRHKI*LCDSRT Trigger: GGTCCGGGAATCACACAGTCATATTTTATGACGTGT...TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR-3UTR CCA 90 bp | CTTAACTGGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTTGGAAAACTATAGCTaGCCCTCATTTCTGGGACCA | + |
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Preference number: 2 (lower is better) Translates to: LNWYSHAWKPMNTVWKFSLENYS*PSFLGP Trigger: TGGTCCCAGAAATGAGGGCCAGCTATAGTTTTCCAA...AGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR-3UTR TCA 90 bp | CACTGGATTTTCCGTCCTACGACCTCCACACACTTTACACAACCTTTTCATTACTCAAGTGTGGTTTTATaGGGACAAAATATCCCAACG | + |
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Preference number: 2 (lower is better) Translates to: HWIFRPTTSTHFTQPFHYSSVVL*GQNIPT Trigger: CGTTGGGATATTTTGTCCTCATAAAACCACACTTGA...GTAATGAAAAGGTTGTGTAAAGTGTGTGGAGGTCGTAGGACGGAAAATCCAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR-3UTR TCA 90 bp | GTAAATAACCATCACAAGTTACTCTGCTGGGAGAATAAAATGAAGCTCTCTCAGACGCATGGAAGCCAATaGACACAGTCTGGAAATTCT | + |
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Preference number: 2 (lower is better) Translates to: VNNHHKLLCWENKMKLSQTHGSQ*TQSGNS Trigger: AGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGT...CTGAGAGAGCTTCATTTTATTCTCCCAGCAGAGTAACTTGTGATGGTTATTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR-3UTR GCA 90 bp | GTAAATAACCATCACAAGTTACTCTGCTGGGAGAATAAAATGAAGCTCTCTCAGTTGGGCAAGAATTACTaGATCGGAGAAGGCACGTAT | + |
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Preference number: 2 (lower is better) Translates to: VNNHHKLLCWENKMKLSQLGKNY*IGEGTY Trigger: ATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAA...CTGAGAGAGCTTCATTTTATTCTCCCAGCAGAGTAACTTGTGATGGTTATTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR GCA 72 bp | ACAGTAGACAAGCCAACCGCATACACAAGACCACAGTaGTACACAAGTAACCCAGCACTGGATTTTCCGTCC | + |
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Preference number: 3 (lower is better) Translates to: TVDKPTAYTRPQ*YTSNPALDFPS Trigger: GGACGGAAAATCCAGTGCTGGGTTACTTGTGTAGCACTGTGGTCTTGTGTATGCGGTTGGCTTGTCTACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 72 bp | ACACAAGACCACAGTGCTACACAAGTAACCCAGCACTaGATTTTCCGTCCTACGACCTCCACACACTTTACA | + |
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Preference number: 3 (lower is better) Translates to: TQDHSATQVTQH*IFRPTTSTHFT Trigger: TGTAAAGTGTGTGGAGGTCGTAGGACGGAAAATCCAGTGCTGGGTTACTTGTGTAGCACTGTGGTCTTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 72 bp | TCGGAGAAGGCACGTATCTGTGATTTAAGGCTTAACTaGTATAGTCACGCATGGAAGCCAATGAACACAGTC | + |
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Preference number: 3 (lower is better) Translates to: SEKARICDLRLN*YSHAWKPMNTV Trigger: GACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAGCCTTAAATCACAGATACGTGCCTTCTCCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 72 bp | TTATCCATAGGGGTTTCCTCATGTATGTACAATGGTTaGGCAAGAATTACTGCATCGGAGAAGGCACGTATC | + |
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Preference number: 3 (lower is better) Translates to: LSIGVSSCMYNG*ARITASEKARI Trigger: GATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAGGAAACCCCTATGGATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 72 bp | AATGTTATCCATAGGGGTTTCCTCATGTATGTACAATaGTTGGGCAAGAATTACTGCATCGGAGAAGGCACG | + |
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Preference number: 3 (lower is better) Translates to: NVIHRGFLMYVQ*LGKNYCIGEGT Trigger: CGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAGGAAACCCCTATGGATAACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| 3UTR CCA 72 bp | ATATCTGACATTGATACAAATCATGTAAACCTCCCTTaGAAAACTATAGCTGGCCCTCATTTCTGGGACCAA | + |
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Preference number: 3 (lower is better) Translates to: ISDIDTNHVNLP*KTIAGPHFWDQ Trigger: TTGGTCCCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTCAGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| 3UTR CCA 72 bp | ATCTGTGATTTAAGGCTTAACTGGTATAGTCACGCATaGAAGCCAATGAACACAGTCTGGAAATTCTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: ICDLRLNWYSHA*KPMNTVWKFSS Trigger: AGAAGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAGCCTTAAATCACAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCTATCTGTGCAAGAGCCACTACAATGGTGGTCACTCCACGGCCTCCGGTGCTGAGGAACCTTaGGGTGCTCCTGCTTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: NKSYLCKSHYNGGHSTASGAEEP*GAPASV Trigger: TACTGAAGCAGGAGCACCCCAAGGTTCCTCAGCACC...GGAGGCCGTGGAGTGACCACCATTGTAGTGGCTCTTGCACAGATAGCTTTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
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| CDS-3UTR TCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAATGGCAAAGGTGGTGCTaGGGAACCTTGGGGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKWQRWC*GTLGCS Trigger: GGAGCACCCCAAGGTTCCTCAGCACCACCTTTGCCA...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | CTTAACTGGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTTGGCCACCTTGGGGTaGTCCTGCTTCAGTAACCCC | + |
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Preference number: 4 (lower is better) Translates to: LNWYSHAWKPMNTVWKFSLATLG*SCFSNP Trigger: GGGGTTACTGAAGCAGGAGCACCCCAAGGTGGCCAA...AGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR GCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACTTTGGCCACCTGCTTaGTGGGTCAGCTTACTAGCT | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKLWPPA*WVSLLA Trigger: AGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAG...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | AATAAAAGCTATCTGTGCAAGAGCCACTACAATGGTGGTCACTCCACGGCCTCCAACAGATGCTGCGACTaGTCAATTTTTGGCAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: NKSYLCKSHYNGGHSTASNRCCD*SIFGRV Trigger: CACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTT...GGAGGCCGTGGAGTGACCACCATTGTAGTGGCTCTTGCACAGATAGCTTTTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTGGCCACCTGCTTGCTaGGTCAGCTTACTAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHWPPAC*VSLLAA Trigger: GGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCA...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCTATCTGTGCAAGAGCCACTACAATGGTGGTCACTCCACGGCCTCCCGACTGCTCAATTTTTaGCAGAGTGTTTGCATCACG | + |
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Preference number: 4 (lower is better) Translates to: NKSYLCKSHYNGGHSTASRLLNF*QSVCIT Trigger: CGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCG...GGAGGCCGTGGAGTGACCACCATTGTAGTGGCTCTTGCACAGATAGCTTTTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | CTTAACTGGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTGGGTGTGCACCATCTaGAAAAGCTGCGTCGACAAG | + |
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Preference number: 4 (lower is better) Translates to: LNWYSHAWKPMNTVWKFSWVCTI*KSCVDK Trigger: CTTGTCGACGCAGCTTTTCCAGATGGTGCACACCCA...AGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CCA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTTCGAGCCAAGATaGAGCGTCCACTCCAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHFFEPR*SVHSRG Trigger: ACCCCTGGAGTGGACGCTCCATCTTGGCTCGAAGAA...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | CCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACAGCTTCTTTTCTTCGAGCCAAGATaGAGCGTCCACTCCAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: PLCDTAGHHKTYSVKQLLFFEPR*SVHSRG Trigger: ACCCCTGGAGTGGACGCTCCATCTTGGCTCGAAGAA...AAGAAGCTGTTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR TCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAATGTGATCTGAGTTTCTaGGAGTCCAAGTCCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKCDLSF*ESKSRW Trigger: CCATCTGGACTTGGACTCTCAGAAACTCAGATCACA...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR TCA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTGTGATCTGAGTTTCTaGGAGTCCAAGTCCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVCDLSF*ESKSRW Trigger: CCATCTGGACTTGGACTCTCAGAAACTCAGATCACA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | CACTGGATTTTCCGTCCTACGACCTCCACACACTTTACACAACCTTTTCATTACAGTTGCTTTTGGGTGTaGACCATCTGGAAAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HWIFRPTTSTHFTQPFHYSCFWV*TIWKSC Trigger: GCAGCTTTTCCAGATGGTGCACACCCAAAAGCAACT...GTAATGAAAAGGTTGTGTAAAGTGTGTGGAGGTCGTAGGACGGAAAATCCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR GCA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTTTTGGCAGAGTGTTTaGATCACGTGGCCCAAGGTT | + |
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Preference number: 4 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVFWQSV*ITWPKV Trigger: AACCTTGGGCCACGTGATGCAAACACTCTGCCAAAA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | CACTGGATTTTCCGTCCTACGACCTCCACACACTTTACACAACCTTTTCATTACAGTGTTTGCATCACGTaGCCCAAGGTTCAGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HWIFRPTTSTHFTQPFHYSVCIT*PKVQFF Trigger: GAAGAACTGAACCTTGGGCCACGTGATGCAAACACT...GTAATGAAAAGGTTGTGTAAAGTGTGTGGAGGTCGTAGGACGGAAAATCCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CCA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATGTTCTTTGGCCACCTTaGGGTGCTCCTGCTTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHVLWPP*GAPASV Trigger: TACTGAAGCAGGAGCACCCCAAGGTGGCCAAAGAAC...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR TCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAAGGTTGCGTAGCACTTTaGCCTTATTTTCCTCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKGCVAL*PYFPRE Trigger: TTCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACC...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | GATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTGGAGTTGCTTTTGGGTGTaGACCATCTGGAAAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DTNHVNLPWKTIAGPHFWSCFWV*TIWKSC Trigger: GCAGCTTTTCCAGATGGTGCACACCCAAAAGCAACT...CCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTAACAGATGCTGCGACTaGTCAATTTTTGGCAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVNRCCD*SIFGRV Trigger: CACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTT...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | CTTAACTGGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTCTCCGAGTTGCTTTTaGGTGTGCACCATCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: LNWYSHAWKPMNTVWKFSSPSCF*VCTIWK Trigger: TTTCCAGATGGTGCACACCCAAAAGCAACTCGGAGA...AGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACGACTGCTCAATTTTTaGCAGAGTGTTTGCATCACG | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKRLLNF*QSVCIT Trigger: CGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCG...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| 3UTR CAA 72 bp | GTTATCCATAGGGGTTTCCTCATGTATGTACAATGGTaGGGCAAGAATTACTGCATCGGAGAAGGCACGTAT | + |
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Preference number: 4 (lower is better) Translates to: VIHRGFLMYVQW*GKNYCIGEGTY Trigger: ATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAGGAAACCCCTATGGATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR TCA 90 bp | TACAATGGTTGGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTAGGTTGCGTAGCACTTTaGCCTTATTTTCCTCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: YNGWARITASEKARICDLGCVAL*PYFPRE Trigger: TTCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACC...TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR GCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAAATTTGGAACAGATGCTaGGACTGCTCAATTTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKIWNRC*DCSIFG Trigger: GCCAAAAATTGAGCAGTCGCAGCATCTGTTCCAAAT...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | CCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACAGCTTCTTTCTCCGAGTTGCTTTTaGGTGTGCACCATCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: PLCDTAGHHKTYSVKQLLSPSCF*VCTIWK Trigger: TTTCCAGATGGTGCACACCCAAAAGCAACTCGGAGA...AAGAAGCTGTTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CCA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATAGTGTTTGCATCACGTaGCCCAAGGTTCAGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHSVCIT*PKVQFF Trigger: GAAGAACTGAACCTTGGGCCACGTGATGCAAACACT...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | GATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTGGTACTGGGATTTCTGCTaGAGAGTTTTTGGGAGATTC | + |
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Preference number: 4 (lower is better) Translates to: DTNHVNLPWKTIAGPHFWYWDFC*RVFGRF Trigger: GAATCTCCCAAAAACTCTGCAGCAGAAATCCCAGTA...CCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAAGTTCTTCCAAATCAGTaGGGTACGCATCATATTCAA | + |
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Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKVLPNQ*GTHHIQ Trigger: TTGAATATGATGCGTACCGCACTGATTTGGAAGAAC...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR GCA 90 bp | TATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTCTATCAAATTTTGGCAGAGTGTTTaGATCACGTGGCCCAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: YSHAWKPMNTVWKFSSIKFWQSV*ITWPKV Trigger: AACCTTGGGCCACGTGATGCAAACACTCTGCCAAAA...TTTGATAGAAGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS-3UTR GCA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTAATCTGACATGGAACTaGTTAAGTGTCAGTTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVNLTWN*LSVSSS Trigger: GCTTGAACTGACACTTAAGCAGTTCCATGTCAGATT...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR CCA 90 bp | GATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTGGTCCATTACTAGTTACTaGGATTTCTGCTGCAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: DTNHVNLPWKTIAGPHFWSITSY*DFCCRV Trigger: AACTCTGCAGCAGAAATCCCAGTAACTAGTAATGGA...CCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR CCA 90 bp | TACAATGGTTGGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTATTTTCCTTATGTATTTaGAACAGATGCTGCGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: YNGWARITASEKARICDLFSLCI*NRCCDC Trigger: GCAGTCGCAGCATCTGTTCCAAATACATAAGGAAAA...TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS-3UTR CCA 90 bp | TTCGGCTGCCCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAAGTTTTCAATCTGACATaGAACTGCTTAAGTGTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: FGCPLCDTAGHHKTYSVKVFNLT*NCLSVS Trigger: ACTGACACTTAAGCAGTTCCATGTCAGATTGAAAAC...TTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGGGCAGCCGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR GCA 90 bp | GTAAATAACCATCACAAGTTACTCTGCTGGGAGAATAAAATGAAGCTCTCTCAGTACTGGGATTTCTGCTaGAGAGTTTTTGGGAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: VNNHHKLLCWENKMKLSQYWDFC*RVFGRF Trigger: GAATCTCCCAAAAACTCTGCAGCAGAAATCCCAGTA...CTGAGAGAGCTTCATTTTATTCTCCCAGCAGAGTAACTTGTGATGGTTATTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS-3UTR GCA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTTCTCAGATATAATTTaGCGGGTACACTTATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVFSDII*RVHLYV Trigger: CACATATAAGTGTACCCGGCAAATTATATCTGAGAA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR CCA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTTTCCTTATGTATTTaGAACAGATGCTGCGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHFSLCI*NRCCDC Trigger: GCAGTCGCAGCATCTGTTCCAAATACATAAGGAAAA...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR GCA 90 bp | TATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTCTATCAAAAATCTGACATGGAACTaGTTAAGTGTCAGTTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: YSHAWKPMNTVWKFSSIKNLTWN*LSVSSS Trigger: GCTTGAACTGACACTTAAGCAGTTCCATGTCAGATT...TTTGATAGAAGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS-3UTR CCA 90 bp | GTAAATAACCATCACAAGTTACTCTGCTGGGAGAATAAAATGAAGCTCTCTCAGTCCATTACTAGTTACTaGGATTTCTGCTGCAGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VNNHHKLLCWENKMKLSQSITSY*DFCCRV Trigger: AACTCTGCAGCAGAAATCCCAGTAACTAGTAATGGA...CTGAGAGAGCTTCATTTTATTCTCCCAGCAGAGTAACTTGTGATGGTTATTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS-3UTR GCA 90 bp | CCCTTGTGTGACACTGCAGGACATCATAAAACTTATTCTGTGAAACAGCTTCTTTTCTCAGATATAATTTaGCGGGTACACTTATATGTG | + |
|
Preference number: 4 (lower is better) Translates to: PLCDTAGHHKTYSVKQLLFSDII*RVHLYV Trigger: CACATATAAGTGTACCCGGCAAATTATATCTGAGAA...AAGAAGCTGTTTCACAGAATAAGTTTTATGATGTCCTGCAGTGTCACACAAGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS CCA 90 bp | CTGCTGGGAGACAGAACACATGGCAAAGGTGGTGCTGAGGAACCTTaGGGTGCTCCTGCTTCAGTAACCCCCTCTTTGGTACTGTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LLGDRTHGKGGAEEP*GAPASVTPSLVLSK Trigger: CTTTGACAGTACCAAAGAGGGGGTTACTGAAGCAGGAGCACCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTCTCCCAGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS GCA 90 bp | AGAATAACTGGTCCTCCTTTTGTGTGTGTTCTTTGGCCACCTGCTTaGTGGGTCAGCTTACTAGCTGCCACCCTGCTGGGAGACAGAACA | + |
|
Preference number: 5 (lower is better) Translates to: RITGPPFVCVLWPPA*WVSLLAATLLGDRT Trigger: TGTTCTGTCTCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAAGGAGGACCAGTTATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS CCA 90 bp | ATAACTGGTCCTCCTTTTGTGTGTGTTCTTTGGCCACCTGCTTGCTaGGTCAGCTTACTAGCTGCCACCCTGCTGGGAGACAGAACACAT | + |
|
Preference number: 5 (lower is better) Translates to: ITGPPFVCVLWPPAC*VSLLAATLLGDRTH Trigger: ATGTGTTCTGTCTCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAAGGAGGACCAGTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS CCA 90 bp | ATTTCATCTGCTAGAATAACTGGTCCTCCTTTTGTGTGTGTTCTTTaGCCACCTGCTTGCTGGGTCAGCTTACTAGCTGCCACCCTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ISSARITGPPFVCVL*PPACWVSLLAATLL Trigger: CAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAAGGAGGACCAGTTATTCTAGCAGATGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS CCA 90 bp | CAGATGCTGCGACTGCTCAATTTTTGGCAGAGTGTTTGCATCACGTaGCCCAAGGTTCAGTTCTTCCAAATCAGTGCGGTACGCATCATA | + |
|
Preference number: 5 (lower is better) Translates to: QMLRLLNFWQSVCIT*PKVQFFQISAVRII Trigger: TATGATGCGTACCGCACTGATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS-3UTR CAA 90 bp | TACAATGGTTGGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTATGTTCTTTGGCCACCTaGGGGTGCTCCTGCTTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: YNGWARITASEKARICDLCSLAT*GCSCFS Trigger: ACTGAAGCAGGAGCACCCCAAGGTGGCCAAAGAACA...TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS GCA 90 bp | TATTTGGAACAGATGCTGCGACTGCTCAATTTTTGGCAGAGTGTTTaGATCACGTGGCCCAAGGTTCAGTTCTTCCAAATCAGTGCGGTA | + |
|
Preference number: 5 (lower is better) Translates to: YLEQMLRLLNFWQSV*ITWPKVQFFQISAV Trigger: TACCGCACTGATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTTCCAAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS-3UTR CAA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTCTTTGGCCACCTGCTaGCTGGGTCAGCTTACTAGC | + |
|
Preference number: 5 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHSLATC*LGQLTS Trigger: GCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGA...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS-3UTR CAA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTTTTGTGTGTGTTCTTaGGCCACCTGCTTGCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVFCVCS*ATCLLG Trigger: ACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS-3UTR CAA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTTTTTGGCAGAGTGTTaGCATCACGTGGCCCAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVFLAEC*HHVAQG Trigger: ACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 47% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS-3UTR CAA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATCAAGGTCCACAGTTCTaGAGCCACGGCCTAGTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHQGPQF*SHGLVS Trigger: AGAAACTAGGCCGTGGCTCAAGAACTGTGGACCTTG...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CAA 90 bp | GATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTGGAAAGGCATCTCCGAGTaGCTTTTGGGTGTGCACCAT | + |
|
Preference number: 5 (lower is better) Translates to: DTNHVNLPWKTIAGPHFWKGISE*LLGVHH Trigger: ATGGTGCACACCCAAAAGCAACTCGGAGATGCCTTT...CCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CAA 90 bp | TACAATGGTTGGGCAAGAATTACTGCATCGGAGAAGGCACGTATCTGTGATTTATTTTTGGCAGAGTGTTaGCATCACGTGGCCCAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: YNGWARITASEKARICDLFLAEC*HHVAQG Trigger: ACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAA...TAAATCACAGATACGTGCCTTCTCCGATGCAGTAATTCTTGCCCAACCATTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CAA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTGCGACTGCTCAATTTTaGGCAGAGTGTTTGCATCAC | + |
|
Preference number: 5 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVATAQF*AECLHH Trigger: GTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGC...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CAA 90 bp | TATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTCTATCAAACAAGGTCCACAGTTCTaGAGCCACGGCCTAGTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: YSHAWKPMNTVWKFSSIKQGPQF*SHGLVS Trigger: AGAAACTAGGCCGTGGCTCAAGAACTGTGGACCTTG...TTTGATAGAAGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CAA 90 bp | GATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTTCTGGGCGACTGCTCAATTTTaGGCAGAGTGTTTGCATCAC | + |
|
Preference number: 5 (lower is better) Translates to: DTNHVNLPWKTIAGPHFWATAQF*AECLHH Trigger: GTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGC...CCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS-3UTR CAA 90 bp | GTCACTCCACGGCCTCCCCAACACTACTTAACTCTTACTAGTTCATTAGTTGTTTGGTTGCGTAGCACTTaGACCTTATTTTCCTCGAGA | + |
|
Preference number: 5 (lower is better) Translates to: VTPRPPQHYLTLTSSLVVWLRST*TLFSSR Trigger: TCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACCA...AACAACTAATGAACTAGTAAGAGTTAAGTAGTGTTGGGGAGGCCGTGGAGTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
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| CDS CCA 90 bp | TTTTTCCTTATGTATTTGGAACAGATGCTGCGACTGCTCAATTTTTaGCAGAGTGTTTGCATCACGTGGCCCAAGGTTCAGTTCTTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: FFLMYLEQMLRLLNF*QSVCITWPKVQFFQ Trigger: TTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTTCCAAATACATAAGGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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| CDS-3UTR CAA 90 bp | CTTAACTGGTATAGTCACGCATGGAAGCCAATGAACACAGTCTGGAAATTCTCTTGGTTGCGTAGCACTTaGACCTTATTTTCCTCGAGA | + |
|
Preference number: 5 (lower is better) Translates to: LNWYSHAWKPMNTVWKFSWLRST*TLFSSR Trigger: TCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACCA...AGAGAATTTCCAGACTGTGTTCATTGGCTTCCATGCGTGACTATACCAGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
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| CDS-3UTR CAA 90 bp | GACATTGATACAAATCATGTAAACCTCCCTTGGAAAACTATAGCTGGCCCTCATTCGAGAAATTTCAATTaGACAGAAACATCACTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: DIDTNHVNLPWKTIAGPHSRNFN*TETSLR Trigger: GCGCAGTGATGTTTCTGTCAAATTGAAATTTCTCGA...ATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAATGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 |
||
| CDS TCA 72 bp | CCTGCTGGGAGACAGAACACATGGCAAAGGTGGTGCTaGGGAACCTTGGGGTGCTCCTGCTTCAGTAACCCC | + |
|
Preference number: 6 (lower is better) Translates to: PAGRQNTWQRWC*GTLGCSCFSNP Trigger: GGGGTTACTGAAGCAGGAGCACCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTCTCCCAGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS GCA 72 bp | CTTTGGCCACCTGCAGGAACAGTCAGATCACCTGCTTaGTGGGTCAGCTTACTAGCTGCCACCCTGCTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: LWPPAGTVRSPA*WVSLLAATLLG Trigger: TCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGATCTGACTGTTCCTGCAGGTGGCCAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143514.3 |
||
| CDS CAA 72 bp | TCTTTGGCCACCTGCAGGAACAGTCAGATCACCTGCTaGCTGGGTCAGCTTACTAGCTGCCACCCTGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SLATCRNSQITC*LGQLTSCHPAG Trigger: CCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGATCTGACTGTTCCTGCAGGTGGCCAAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143514.3 |
||
| CDS GCA 72 bp | TCTTTGGCCACCTGCTTGCTGGGTCAGCTTACTAGCTaGCACCCTGCTGGGAGACAGAACACATGGCAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SLATCLLGQLTS*HPAGRQNTWQR Trigger: CCTTTGCCATGTGTTCTGTCTCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS GCA 72 bp | GGTCCTCCTTTTGTGTGTGTTCTTTGGCCACCTGCTTaGTGGGTCAGCTTACTAGCTGCCACCCTGCTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: GPPFVCVLWPPA*WVSLLAATLLG Trigger: TCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAAGGAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS GCA 72 bp | AGTCAGATCACCTGCTTGCTGGGTCAGCTTACTAGCTaGCACCCTGCTGGGAGACAGAACACATGGCAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: SQITCLLGQLTS*HPAGRQNTWQR Trigger: CCTTTGCCATGTGTTCTGTCTCCCAGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGATCTGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143514.3 |
||
| CDS GCA 72 bp | AACTGGTCCTCCTTTTGTGTGTGTTCTTTGGCCACCTaGTTGCTGGGTCAGCTTACTAGCTGCCACCCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: NWSSFCVCSLAT*LLGQLTSCHPA Trigger: AGCAGGGTGGCAGCTAGTAAGCTGACCCAGCAAGCAGGTGGCCAAAGAACACACACAAAAGGAGGACCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107687.9 |
||
| CDS CCA 72 bp | GACAGAACACATGGCAAAGGTGGTGCTGAGGAACCTTaGGGTGCTCCTGCTTCAGTAACCCCCTCTTTGGTA | + |
|
Preference number: 6 (lower is better) Translates to: DRTHGKGGAEEP*GAPASVTPSLV Trigger: TACCAAAGAGGGGGTTACTGAAGCAGGAGCACCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CCA 72 bp | ACTGGTCCTCCTTTTGTGTGTGTTCTTTGGCCACCTTaGGGTGCTCCTGCTTCAGTAACCCCCTCTTTGGTA | + |
|
Preference number: 6 (lower is better) Translates to: TGPPFVCVLWPP*GAPASVTPSLV Trigger: TACCAAAGAGGGGGTTACTGAAGCAGGAGCACCCCAAGGTGGCCAAAGAACACACACAAAAGGAGGACCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098990.10 |
||
| CDS GCA 72 bp | CAGATGCTGCGACTGCTCAATTTTTGGCAGAGTGTTTaGATCACGTGGCCCAAGGTTCAGTTCTTCCAAATC | + |
|
Preference number: 6 (lower is better) Translates to: QMLRLLNFWQSV*ITWPKVQFFQI Trigger: GATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CCA 72 bp | CGACTGCTCAATTTTTGGCAGAGTGTTTGCATCACGTaGCCCAAGGTTCAGTTCTTCCAAATCAGTGCGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RLLNFWQSVCIT*PKVQFFQISAV Trigger: TACCGCACTGATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CAA 90 bp | GTATTTGGAACAGATGCTGCGACTGCTCAATTTTTGGCAGAGTGTTaGCATCACGTGGCCCAAGGTTCAGTTCTTCCAAATCAGTGCGGT | + |
|
Preference number: 6 (lower is better) Translates to: VFGTDAATAQFLAEC*HHVAQGSVLPNQCG Trigger: ACCGCACTGATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTTCCAAATAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CCA 72 bp | ATGTATTTGGAACAGATGCTGCGACTGCTCAATTTTTaGCAGAGTGTTTGCATCACGTGGCCCAAGGTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: MYLEQMLRLLNF*QSVCITWPKVQ Trigger: CTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGTTCCAAATACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CAA 72 bp | ACAGATGCTGCGACTGCTCAATTTTTGGCAGAGTGTTaGCATCACGTGGCCCAAGGTTCAGTTCTTCCAAAT | + |
|
Preference number: 6 (lower is better) Translates to: TDAATAQFLAEC*HHVAQGSVLPN Trigger: ATTTGGAAGAACTGAACCTTGGGCCACGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCGCAGCATCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
||
| CDS CAA 90 bp | GCAGCAACTGCGCTGTGGAAGAGGACCAGTTGGTTGCGTAGCACTTaGACCTTATTTTCCTCGAGAAATTTCAATTTGACAGAAACATCA | + |
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Preference number: 6 (lower is better) Translates to: AATALWKRTSWLRST*TLFSSRNFNLTETS Trigger: TGATGTTTCTGTCAAATTGAAATTTCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACCAACTGGTCCTCTTCCACAGCGCAGTTGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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| CDS CAA 72 bp | GCGCTGTGGAAGAGGACCAGTTGGTTGCGTAGCACTTaGACCTTATTTTCCTCGAGAAATTTCAATTTGACA | + |
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Preference number: 6 (lower is better) Translates to: ALWKRTSWLRST*TLFSSRNFNLT Trigger: TGTCAAATTGAAATTTCTCGAGGAAAATAAGGTCAAAGTGCTACGCAACCAACTGGTCCTCTTCCACAGCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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| CDS CCA 72 bp | CTCATGAGCATCGTCAACTTCTCCATTACTAGTTACTaGGATTTCTGCTGCAGAGTTTTTGGGAGATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LMSIVNFSITSY*DFCCRVFGRFL Trigger: CAAGAATCTCCCAAAAACTCTGCAGCAGAAATCCCAGTAACTAGTAATGGAGAAGTTGACGATGCTCATGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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| CDS GCA 72 bp | GTTCTTGAGCCACGGCCTAGTTTCTCAGATATAATTTaGCGGGTACACTTATATGTGTTGAGACTCCATTTT | + |
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Preference number: 6 (lower is better) Translates to: VLEPRPSFSDII*RVHLYVLRLHF Trigger: AAAATGGAGTCTCAACACATATAAGTGTACCCGGCAAATTATATCTGAGAAACTAGGCCGTGGCTCAAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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| CDS CAA 90 bp | CGGCCTAGTTTCTCAGATATAATTTGCCGGGTACACTTATATGTGTaGAGACTCCATTTTCTAACAAGTTCTAACTTCTCCATTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: RPSFSDIICRVHLYV*RLHFLTSSNFSIAG Trigger: TCCTGCAATGGAGAAGTTAGAACTTGTTAGAAAATGGAGTCTCAACACATATAAGTGTACCCGGCAAATTATATCTGAGAAACTAGGCCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098990.10 ENSMUST00000107687.9 ENSMUST00000143514.3 |
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