RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARFGEF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067851

Ensembl transcript IDs: ENSMUST00000088615.11, ENSMUST00000131556.2

Found 245 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGGTAGGCTaGTGCTGTGGGAACAGCCTTTCTGCTCAACATGAGCCCAACACG +
Preference number: 1 (lower is better)
Translates to: GLTLLRGQGRTLKVG*CCGNSLSAQHEPNT
Trigger: CGTGTTGGGCTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGCCTACCTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR TCA 90 bp CCTAAAGGTAGGCTGATGCTGTGGGAACAGCCTTTCTGCTCAACATaGGCCCAACACGAGACAGAGGCCACTGGGTTACTAAAGGGACTG +
Preference number: 1 (lower is better)
Translates to: PKGRLMLWEQPFCST*AQHETEATGLLKGL
Trigger: CAGTCCCTTTAGTAACCCAGTGGCCTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGCCTACCTTTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR CCA 90 bp ACAGCCTTTCTGCTCAACATGAGCCCAACACGAGACAGAGGCCACTaGGTTACTAAAGGGACTGGAGGGACTATTCCGACCTTGAGTTAT +
Preference number: 1 (lower is better)
Translates to: TAFLLNMSPTRDRGH*VTKGTGGTIPTLSY
Trigger: ATAACTCAAGGTCGGAATAGTCCCTCCAGTCCCTTTAGTAACCCAGTGGCCTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR GCA 90 bp AAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTaGCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCC +
Preference number: 1 (lower is better)
Translates to: KLSLYIYTSLGNFRT*HSVGSPCLEDREGP
Trigger: GGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR CCA 90 bp TATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTGGTaGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAACAG +
Preference number: 1 (lower is better)
Translates to: YVTGRSCQQGCFLPW*IPSCCHLDRHQPQQ
Trigger: CTGTTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR CCA 90 bp GAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTaGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAA +
Preference number: 1 (lower is better)
Translates to: EYVTGRSCQQGCFLP*WIPSCCHLDRHQPQ
Trigger: TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR TCA 90 bp GAGGCCACTGGGTTACTAAAGGGACTGGAGGGACTATTCCGACCTTaGGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAA +
Preference number: 1 (lower is better)
Translates to: EATGLLKGLEGLFRP*VIGVSVLPVTHTLQ
Trigger: TTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAAGGTCGGAATAGTCCCTCCAGTCCCTTTAGTAACCCAGTGGCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR GCA 90 bp CAGTGCAGGAGGAACAATATGTTTAAGATTTTTATATTACAGACCTaGATCTCTGTACATTTTCACAGAAAGATGATGATTTCCGGTGTC +
Preference number: 1 (lower is better)
Translates to: QCRRNNMFKIFILQT*ISVHFHRKMMISGV
Trigger: GACACCGGAAATCATCATCTTTCTGTGAAAATGTACAGAGATGCAGGTCTGTAATATAAAAATCTTAAACATATTGTTCCTCCTGCACTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR CAA 90 bp AGAGGCCACTGGGTTACTAAAGGGACTGGAGGGACTATTCCGACCTaGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACA +
Preference number: 2 (lower is better)
Translates to: RGHWVTKGTGGTIPT*SYRCKRLTSNSHTT
Trigger: TGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAAGGTCGGAATAGTCCCTCCAGTCCCTTTAGTAACCCAGTGGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR-3UTR TCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCCTTTCTGCTCAACATaGGCCCAACACGAGACAGAG +
Preference number: 2 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCPFCST*AQHETE
Trigger: CTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGG...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR TCA 72 bp AGGCTGATGCTGTGGGAACAGCCTTTCTGCTCAACATaGGCCCAACACGAGACAGAGGCCACTGGGTTACTA +
Preference number: 3 (lower is better)
Translates to: RLMLWEQPFCST*AQHETEATGLL
Trigger: TAGTAACCCAGTGGCCTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR TCA 72 bp CTGCTTAGAGGACAGGGAAGGACCCTAAAGGTAGGCTaGTGCTGTGGGAACAGCCTTTCTGCTCAACATGAG +
Preference number: 3 (lower is better)
Translates to: LLRGQGRTLKVG*CCGNSLSAQHE
Trigger: CTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGCCTACCTTTAGGGTCCTTCCCTGTCCTCTAAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR TCA 72 bp TTTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTaGCAGGCATCAGCCACAACAGATTCAGGGCACAGC +
Preference number: 3 (lower is better)
Translates to: FSTLVDPLLLSS*QASATTDSGHS
Trigger: GCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR CCA 72 bp GGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTGGTaGATCCCCTCCTGTTGTCATCTTGACAGGCATCAG +
Preference number: 3 (lower is better)
Translates to: GRSCQQGCFLPW*IPSCCHLDRHQ
Trigger: CTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAACATCCCTGCTGACAAGACCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR GCA 72 bp CTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTaGCACAGTGTGGGCTCACCCTGCTTAGAGGACAGG +
Preference number: 3 (lower is better)
Translates to: LYIYTSLGNFRT*HSVGSPCLEDR
Trigger: CCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR-3UTR CAA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAACTCACACACTACAATaGAGAGAAACATTTTTCAGG +
Preference number: 3 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRETHTLQ*RETFFR
Trigger: CCTGAAAAATGTTTCTCTCAATTGTAGTGTGTGAGT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
3UTR-3UTR CAA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACTACAGCTCTCCTGAGTaGTACTTCTCGCAGAAGCTC +
Preference number: 3 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNYSSPE*YFSQKL
Trigger: GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTA...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGGGTGACTCGGGCTCATaGTGGCTTACTGGAGACTGT +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKGDSGS*WLTGDC
Trigger: ACAGTCTCCAGTAAGCCATCATGAGCCCGAGTCACC...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACCCACCTCGCACGCTTTaGGCAGCTGGGAGTGATGCG +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDPPRTL*AAGSDA
Trigger: CGCATCACTCCCAGCTGCGCAAAGCGTGCGAGGTGG...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGTGTCGATGGTCTGGATaGGTTCCAGCTGCACAACAC +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKCRWSG*VPAAQH
Trigger: GTGTTGTGCAGCTGGAACTCATCCAGACCATCGACA...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAACTTGGAGACCCACACTaGATGCAGCCAGAAAAGGTG +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRELGDPH*MQPEKV
Trigger: CACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAG...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGTTTCTGAGCTTCTCCTaGAAGCCGGAATCCTTCCAG +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKFLSFS*KPESFQ
Trigger: CTGGAAGGATTCCGGCTTCCAGGAGAAGCTCAGAAA...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGGTTGCCTTCTGTACTTaGACTGATAGCCATCCCTTC +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKVAFCT*TDSHPF
Trigger: GAAGGGATGGCTATCAGTGCAAGTACAGAAGGCAAC...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGCCTGAAAACAGGTCCTaGATTCTGCAGAATGGACAG +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKPENRS*ILQNGQ
Trigger: CTGTCCATTCTGCAGAATGCAGGACCTGTTTTCAGG...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCACATCCGGAAGAGAATaGGCAGCCCACACGCCAGGC +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSTSGRE*AAHTPG
Trigger: GCCTGGCGTGTGGGCTGCGCATTCTCTTCCGGATGT...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGACGTTTAAAAGCCTCTaGTGGACTTCTTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKTFKSL*WTSSQA
Trigger: TGCCTGGGAAGAAGTCCAGCAGAGGCTTTTAAACGT...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGTCTACTGCATCTCTCTaGGCTGCAGCTAAGTTCTCT +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKSTASL*AAAKFS
Trigger: AGAGAACTTAGCTGCAGCCCAGAGAGATGCAGTAGA...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAATTGGGGTTCACATACTaGTCCTTGCTCCATTCAACC +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRELGFTY*SLLHST
Trigger: GGTTGAATGGAGCAAGGATCAGTATGTGAACCCCAA...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGGCATCTCTTTCCAGCTaGATGCTGAAAATGCATGCA +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKASLSS*MLKMHA
Trigger: TGCATGCATTTTCAGCATTCAGCTGGAAAGAGATGC...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACTGGTGTCGTACTATCTaGAGCCCTGCCAGTCAAGTG +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDWCRTI*SPASQV
Trigger: CACTTGACTGGCAGGGCTCCAGATAGTACGACACCA...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACTGGCTGCCCCTTCCTTaGGCAATTTTCGACAGGTCA +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDWLPLP*AIFDRS
Trigger: TGACCTGTCGAAAATTGCCCAAGGAAGGGGCAGCCA...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGCCAGATCGTGCTAACTaGTCATTGTCTTGTTGTACA +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKPDRAN*SLSCCT
Trigger: TGTACAACAAGACAATGAGCAGTTAGCACGATCTGG...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGAATCTGGCTAGTGCTTaGACATATGCATCTCTTTCC +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKNLASA*TYASLS
Trigger: GGAAAGAGATGCATATGTCCAAGCACTAGCCAGATT...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATGTGCCAGCTCTAACTaGCTGATGCACTTCAGGATC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQCASSN*LMHFRI
Trigger: GATCCTGAAGTGCATCAGTCAGTTAGAGCTGGCACA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAAATGTTCTTCCATCCTaGACGAATATTTGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRENVLPS*TNICSL
Trigger: CAGGCTGCAAATATTCGTTCAGGATGGAAGAACATT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAATGTGCCCTGTTGTCTaGAATGCAAGTTCTACTATG +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDREMCPVV*NASSTM
Trigger: CATAGTAGAACTTGCATTTCAGACAACAGGGCACAT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACTTTCGGATGTTAGAGTaGGGAAGTAGCTCAGCGCTT +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDFRMLE*GSSSAL
Trigger: AAGCGCTGAGCTACTTCCTCACTCTAACATCCGAAA...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAATCTGTGTACTGTAGCTaGCAATTCCTGATGATGATG +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRESVYCS*QFLMMM
Trigger: CATCATCATCAGGAATTGGCAGCTACAGTACACAGA...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAACACAGCTTCCATGAGTaGTTTAGCCGTCTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQHSFHE*FSRLGH
Trigger: ATGGCCAAGACGGCTAAAGCACTCATGGAAGCTGTG...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAGAGACCCACACTGAATaGAGCCAGAAAAGGTGTCCA +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQETHTE*SQKRCP
Trigger: TGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTC...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGTGGATGAGTTCCAGCTaGACAACACATTTAATCAAC +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKWMSSS*TTHLIN
Trigger: GTTGATTAAATGTGTTGTGCAGCTGGAACTCATCCA...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCCGGGGACATTTGGACTaGCATGCCAACTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSRGHLD*HANSKG
Trigger: ACCCTTTGAGTTGGCATGCCAGTCCAAATGTCCCCG...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGGGGATTCCATTTGCTTaGATGTTTTCACTGTCACTA +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKGIPFA*MFSLSL
Trigger: TAGTGACAGTGAAAACATCCAAGCAAATGGAATCCC...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTGGTGGAAGGGTGCCTaGTCCAGCTTTTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGWWKGA*SSFCFS
Trigger: GGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACCA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCCACTTGTGTACTCCTTaGAAGCCTGCGGTCTATCAG +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSHLCTP*KPAVYQ
Trigger: CTGATAGACCGCAGGCTTTCAAGGAGTACACAAGTG...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATGTTTCAGCTGCAGTTaGCTGATCAGCTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQCFSCS*LISFCL
Trigger: CAGACAGAAGCTGATCAGGCAACTGCAGCTGAAACA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAACTGGACAATATCAAGTaGCTTTTCTTCATAGTCTCC +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRELDNIK*LFFIVS
Trigger: GGAGACTATGAAGAAAAGCCACTTGATATTGTCCAG...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAATTCCTGAGTATCATTaGAGGAGACAGATAACCTGT +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDREIPEYH*RRQITC
Trigger: ACAGGTTATCTGTCTCCTCCAATGATACTCAGGAAT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGATAACCATCCACTTATaGTCAAATGAGCTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKITIHL*SNELVD
Trigger: GTCTACAAGCTCATTTGACCATAAGTGGATGGTTAT...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAAAAAGGGTTTGTCCTTaGTTGCACTCTAGGTATCTT +
Preference number: 4 (lower is better)
Translates to: GNFRTCHSVGSPCLEDREKRVCP*LHSRYL
Trigger: AAGATACCTAGAGTGCAACCAAGGACAAACCCTTTT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACGTATCATCACAGTCTTaGAGACCCACACTGAATGCA +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDVSSQS*RPTLNA
Trigger: TGCATTCAGTGTGGGTCTCCAAGACTGTGATGATAC...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAACACTTCACTGCATCCTaGAAAGAATCAATGGTGGCC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQHFTAS*KESMVA
Trigger: GGCCACCATTGATTCTTTCCAGGATGCAGTGAAGTG...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAGCTTACACAATGACCTaGACACTAGAAAGGCATCCT +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQAYTMT*TLERHP
Trigger: AGGATGCCTTTCTAGTGTTCAGGTCATTGTGTAAGC...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAGAGAGGGTAGTAGAATaGTGCGTGAGCTTTAAACCT +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQERVVE*CVSFKP
Trigger: AGGTTTAAAGCTCACGCATCATTCTACTACCCTCTC...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGGGTTTGTCCTTGGTTaGACTCTAGGTATCTTGCAG +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPGFVLG*TLGILQ
Trigger: CTGCAAGATACCTAGAGTGCAACCAAGGACAAACCC...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTTGCACTTGTAAAAGGTaGCTGAACATGGCTCACAGC +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPCTCKR*LNMAHS
Trigger: GCTGTGAGCCATGTTCAGGCACCTTTTACAAGTGCA...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCGTGCTCCAAGTGTGTTaGACTTGTAAAAGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSVLQVC*TCKRCL
Trigger: CAGGCACCTTTTACAAGTGCAACACACTTGGAGCAC...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACAGAAATGGGTGTTCCTaGGATTCCATTTGCTTGGAT +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDRNGCS*DSICLD
Trigger: ATCCAAGCAAATGGAATCCCAGGAACACCCATTTCT...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTATGTTGTCGATGGTCTaGATGAGTTCCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPMLSMV*MSSSCT
Trigger: TGTGCAGCTGGAACTCATCCAGACCATCGACAACAT...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACTTGCGCAGCTGGGAGTaGTGCGCCTTCTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNLRSWE*CAFFTS
Trigger: GGAAGTGAAGAAGGCGCATCACTCCCAGCTGCGCAA...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACTTTCAAATACAAGAGTaGCAATGTGCCCTGTTGTCT +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDFQIQE*QCALLS
Trigger: AGACAACAGGGCACATTGTCACTCTTGTATTTGAAA...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCGTCCAGGCTTCCCGGTaGCTTTCGGATGTTAGAGTG +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLVQASR*LSDVRV
Trigger: CACTCTAACATCCGAAAGTCACCGGGAAGCCTGGAC...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAACCTCAGAGAGTCTACTaGAAATATGGCTACATCTTC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQPQRVY*KYGYIF
Trigger: GAAGATGTAGCCATATTTGCAGTAGACTCTCTGAGG...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAAACTTCATTGATAGCTaGCTCAGAGAGTCTACTGCA +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQNFIDS*LRESTA
Trigger: TGCAGTAGACTCTCTGAGGCAGCTATCAATGAAGTT...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACCCTGTCTTCAGGTaGCACGCTCATGTCATCACT +
Preference number: 4 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCHPVFR*HAHVIT
Trigger: AGTGATGACATGAGCGTGGCACCTGAAGACAGGGTG...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTAGCTCAGCGCTTCCCTaGAGACGTTTAAAAGCCTCT +
Preference number: 4 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLSSALP*RRLKAS
Trigger: AGAGGCTTTTAAACGTCTGCAGGGAAGCGCTGAGCT...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAACCAACAAATTCATCTaGAGCCTGATCTTTTGTCCC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQTNKFI*SLIFCP
Trigger: GGGACAAAAGATCAGGCTCCAGATGAATTTGTTGGT...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATTCCATACTTGTGTCTaGGAAAGCTGCATTACATGC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQFHTCV*ESCITC
Trigger: GCATGTAATGCAGCTTTCCCAGACACAAGTATGGAA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAAGAAACAGAAACCAGTaGTGCTTGCTGTCTGTTATC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQRNRNQ*CLLSVI
Trigger: GATAACAGACAGCAAGCACCACTGGTTTCTGTTTCT...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAAATCCTTTTGGAATCTaGAGTTTGCAAGCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQNPFGI*SLQALL
Trigger: AAGGAGAGCTTGCAAACTTCAGATTCCAAAAGGATT...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTCCAAAAGTACATCGCTaGGAACTTCTAAATACTGGG +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPPKVHR*ELLNTG
Trigger: CCCAGTATTTAGAAGTTCTCAGCGATGTACTTTTGG...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCTACATTCCTTGGTCTTaGGTATCAACTCGAACATCG +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSYIPWS*VSTRTS
Trigger: CGATGTTCGAGTTGATACTCAAGACCAAGGAATGTA...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTGGAGACTGTAACAAATaGTGCTGCTGCCGATGTCTT +
Preference number: 4 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLGDCNK*CCCRCL
Trigger: AAGACATCGGCAGCAGCAGCATTTGTTACAGTCTCC...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACATCAGACACATATTTTaGACAATGGCGAATAAGTCG +
Preference number: 4 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDIRHIF*TMANKS
Trigger: CGACTTATTCGCCATTGTGCAAAATATGTGTCTGAT...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATACTCCTTCATCTGTTTaGGGACCTTGGAAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYTPSSV*GPWKQP
Trigger: TGGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATGTCTGTTCATTTTCTaGACTGGAAATATCAGATCC +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQCLFIF*TGNIRS
Trigger: GGATCTGATATTTCCAGTGCAGAAAATGAACAGACA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAACCATTTCTTCTACAATaGTCTGGACAATATCAAGTG +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQPFLLQ*SGQYQV
Trigger: CACTTGATATTGTCCAGAGCATTGTAGAAGAAATGG...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATTGTTCTGGGAATTTTaGTGTGGATTTCACTTTGCT +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQLFWEF*CGFHFA
Trigger: AGCAAAGTGAAATCCACAGCAAAATTCCCAGAACAA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATAACATCGAAGTCTACTaGATCTCTCTGGGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYNIEVY*ISLGCS
Trigger: GCTGCAGCCCAGAGAGATGCAGTAGACTTCGATGTT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCCTATGCGGGGACATTTaGACTGGCATGCCAACTCAA +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLLCGDI*TGMPTQ
Trigger: TTGAGTTGGCATGCCAGTCCAAATGTCCCCGCATAG...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAATGTCCACCACACTCTaGGCATCTGCACAGATCCTT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERMSTTL*ASAQIL
Trigger: AAGGATCTGTGCAGATGCTCAGAGTGTGGTGGACAT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATAATCGATCAATTTTCTaGGCTTCTCCTGGAAGCCGG +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYNRSIF*ASPGSR
Trigger: CCGGCTTCCAGGAGAAGCTCAGAAAATTGATCGATT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACCTTGTAAAAGGTGCCTaGACATGGCTCACAGCTTCC +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNLVKGA*TWLTAS
Trigger: GGAAGCTGTGAGCCATGTTCAGGCACCTTTTACAAG...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATCAAGTCAGAAGCGCGTaGGGAATTGTGGTTTTGAAG +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYQVRSA*GIVVLK
Trigger: CTTCAAAACCACAATTCCTCACGCGCTTCTGACTTG...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTTTGCTGTCTGTTATCTaGAGATCTTGGTTGAATAGA +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPLLSVI*RSWLNR
Trigger: TCTATTCAACCAAGATCTTCAGATAACAGACAGCAA...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCAGCAGTCCAGTAGCTTaGACAGTTGTTGTGATGTTA +
Preference number: 4 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGSSPVA*TVVVML
Trigger: TAACATCACAACAACTGTTCAAGCTACTGGACTGCT...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACTACTATCTGGAGCCCTaGCAGTCAAGTGCCCATAAG +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNYYLEP*QSSAHK
Trigger: CTTATGGGCACTTGACTGGCAGGGCTCCAGATAGTA...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAAAGAATACCTCAATTTaGATCTTCAGATGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQKNTSI*IFRCVL
Trigger: CAAGACACATCTGAAGATGCAAATTGAGGTATTCTT...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTTCACATACTGATCCTTaGTCCATTCAACCATACATT +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPSHTDP*SIQPYI
Trigger: AATGTATGGTTGAATGGAGCAAGGATCAGTATGTGA...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCTATCTTCGGGTGTGGTaGCAAGCATCCCTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLYLRVW*QASLVL
Trigger: AAGAACAAGGGATGCTTGGCACCACACCCGAAGATA...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAAACATCGGCCTCACGTaGTCCAAGTGTGTTGCACTT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERNIGLT*SKCVAL
Trigger: AAGTGCAACACACTTGGAGCACGTGAGGCCGATGTT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCGAAAGCTGCATTACATaGGAATTCAGACAAACACTT +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSESCIT*EFRQTL
Trigger: AAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTC...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTGTGTCTGGGAAAGCTaGATTACATGCGAATTCAGA +
Preference number: 4 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGCVWES*ITCEFR
Trigger: TCTGAATTCGCATGTAATGCAGCTTTCCCAGACACA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTCCTGAAAAGTCATGTTaGTCTACATATGCATACATG +
Preference number: 4 (lower is better)
Translates to: TSILLWVISVPATVWAHPPEKSC*STYAYM
Trigger: CATGTATGCATATGTAGACCAACATGACTTTTCAGG...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCTTACTGTTAAGCCCCTaGTTCTTACATCTAATTTGC +
Preference number: 4 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSLLLSP*FLHLIC
Trigger: GCAAATTAGATGTAAGAACCAGGGGCTTAACAGTAA...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAACAGGTCCTGCATTCTaGAGAATGGACAGAAGCAAC +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERTGPAF*RMDRSN
Trigger: GTTGCTTCTGTCCATTCTGCAGAATGCAGGACCTGT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGACACACTCTGAGCATCTaGACAGATCCTTGTCAGTGT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERHTLSI*TDPCQC
Trigger: ACACTGACAAGGATCTGTGCAGATGCTCAGAGTGTG...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGATACCAAGTTCTTGGCTaGCCCTTCCTTGGGCAATTT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERYQVLG*PFLGQF
Trigger: AAATTGCCCAAGGAAGGGGCAGCCAAGAACTTGGTA...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATGCGAATAAGTCGGATTaGTTCCATACTTGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYANKSD*FHTCVW
Trigger: CCAGACACAAGTATGGAAGCAATCCGACTTATTCGC...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAGCCTCCTGTAATGCTTaGTTTTCCATGCGTGCAAAG +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERASCNA*FSMRAK
Trigger: CTTTGCACGCATGGAAAACCAAGCATTACAGGAGGC...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTATATGCAACAGAAATaGGTGTTCCTGGGATTCCAT +
Preference number: 4 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGYMQQK*VFLGFH
Trigger: ATGGAATCCCAGGAACACCCATTTCTGTTGCATATA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTGACCTCAAATTGTTCTaGATTATCAGTGCCAGACAT +
Preference number: 4 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLDLKLF*IISARH
Trigger: ATGTCTGGCACTGATAATCCAGAACAATTTGAGGTC...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCAGCATCCCTTGTTCTTaGAGGTATTGTATTCCTCTC +
Preference number: 4 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCSIPCS*RYCIPL
Trigger: GAGAGGAATACAATACCTCCAAGAACAAGGGATGCT...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGACTATATCTTCGGGTGTaGTGCCAAGCATCCCTTGTT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERLYLRV*CQASLV
Trigger: AACAAGGGATGCTTGGCACCACACCCGAAGATATAG...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAACTTATCTCTTGCTCTaGGGGTTTTTCCTGACCAAG +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERTYLLL*GFFLTK
Trigger: CTTGGTCAGGAAAAACCCTCAGAGCAAGAGATAAGT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCGTCTACAGATTTTTGTaGTATTGCATCCAACGGCTT +
Preference number: 4 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCVYRFL*YCIQRL
Trigger: AAGCCGTTGGATGCAATATCACAAAAATCTGTAGAC...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACGACTGTAACAAATGCTaGTGCTGCCGATGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNDCNKC*CCRCLS
Trigger: AGAAAGACATCGGCAGCAGCAGCATTTGTTACAGTC...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTAATGCTGAAAATGCATaGAATCCTGATAGCACATCT +
Preference number: 4 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLNAENA*NPDSTS
Trigger: AGATGTGCTATCAGGATTGCATGCATTTTCAGCATT...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGACAAATCCGAGACCACTaGAGTCTTATTCTTCCCATG +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERQIRDH*SLILPM
Trigger: CATGGGAAGAATAAGACTGCAGTGGTCTCGGATTTG...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTCATATCTCGAATTGTTaGAGACCTGTTTCGTTTCAT +
Preference number: 4 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLHISNC*RPVSFH
Trigger: ATGAAACGAAACAGGTCTCCAACAATTCGAGATATG...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCGGAAAGAATCAATGGTaGCCGGAAAGTGTTTTTCAA +
Preference number: 4 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCGKNQW*PESVFQ
Trigger: TTGAAAAACACTTTCCGGCCACCATTGATTCTTTCC...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCCCTGGAAAGAATCAATaGTGGCCGGAAAGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLPGKNQ*WPESVF
Trigger: AAAAACACTTTCCGGCCACCATTGATTCTTTCCAGG...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACCTTCTTGCTTGTGGCTaGGAAGAAGACAATGTTGTC +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNLLACG*EEDNVV
Trigger: GACAACATTGTCTTCTTCCCAGCCACAAGCAAGAAG...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACATCCTTGTCAGTGTCTaGATAACCATCCACTTATGG +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNILVSV*ITIHLW
Trigger: CCATAAGTGGATGGTTATTCAGACACTGACAAGGAT...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACGAAACCAGTGGTGCTTaGTGTCTGTTATCTGAAGAT +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNETSGA*CLLSED
Trigger: ATCTTCAGATAACAGACAGCAAGCACCACTGGTTTC...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACCTCTTTCCATTTGTTTaGCCTCCTGTAATGCTTGGT +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNLFPFV*PPVMLG
Trigger: ACCAAGCATTACAGGAGGCCAAACAAATGGAAAGAG...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATATCAACAGTCTGAGGTaGCAAATATCTAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYINSLR*QISKMR
Trigger: CCTCATCTTAGATATTTGCCACCTCAGACTGTTGAT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTTCCTGATGATGATGTaGATTCTAAGGAGTTTAAAC +
Preference number: 4 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGFLMMM*ILRSLN
Trigger: GTTTAAACTCCTTAGAATCCACATCATCATCAGGAA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCTTTGTTTTTAACCTGTaGACTGTGAAGGTCTGTAGT +
Preference number: 4 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCFVFNL*TVKVCS
Trigger: ACTACAGACCTTCACAGTCCACAGGTTAAAAACAAA...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAACTATGCTTTCATCTTaGTCTGATGCAGCTAGATGG +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERTMLSS*SDAARW
Trigger: CCATCTAGCTGCATCAGACCAAGATGAAAGCATAGT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATCTCTGTCTGCTGTTCTaGCAATTTCATGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYLCLLF*QFHVVK
Trigger: TTTGACAACATGAAATTGCCAGAACAGCAGACAGAG...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCAACATGATAATTaGGTAGGCCAAAACATAAGC +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLSQHDN*VGQNIS
Trigger: GCTTATGTTTTGGCCTACTCAATTATCATGTTGACT...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAACATAAGCAGTATCTaGACTAGCAAAAAGGGTTTG +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLNISSI*TSKKGL
Trigger: CAAACCCTTTTTGCTAGTGCAGATACTGCTTATGTT...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGACAAACACTTCACTaGATCCTGGAAAGAATCAAT +
Preference number: 4 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLRQTLH*ILERIN
Trigger: ATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCT...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAGCTTTTGCAAATCTATaGGACTCTAATAAGCAGTCC +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERAFANL*DSNKQS
Trigger: GGACTGCTTATTAGAGTCGCATAGATTTGCAAAAGC...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATTCTTCTACAATGCTCTaGACAATATCAAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYSSTML*TISSGF
Trigger: AAAGCCACTTGATATTGTCCAGAGCATTGTAGAAGA...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAGCAATGAAAGAATCTTaGACCGTAACTCATGAGACT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERAMKES*TVTHET
Trigger: AGTCTCATGAGTTACGGTCCAAGATTCTTTCATTGC...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR TCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAGGTGGTTGTGATATTTaGAATACTATTCCAATTCGC +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERGGCDI*NTIPIR
Trigger: GCGAATTGGAATAGTATTTCAAATATCACAACCACC...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATGAATACATCACATATTaGATAAAGGGCATGGTTACA +
Preference number: 4 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYEYITY*IKGMVT
Trigger: TGTAACCATGCCCTTTATGCAATATGTGATGTATTC...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp TTGAGTTATAGGTGTAAGCGTCTTACCAGTAACTCACACACTACAATTGAGAGAAGCACAGTTCCTTCATaGATTTCTATGTGTTGTGAT +
Preference number: 4 (lower is better)
Translates to: LSYRCKRLTSNSHTTIERSTVPS*ISMCCD
Trigger: ATCACAACACATAGAAATCCATGAAGGAACTGTGCT...TCTCTCAATTGTAGTGTGTGAGTTACTGGTAAGACGCTTACACCTATAACTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACACATATTTTGCACAATaGCGAATAAGTCGGATTGCT +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNTYFAQ*RISRIA
Trigger: AGCAATCCGACTTATTCGCCATTGTGCAAAATATGT...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR GCA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACAGAATTAACCATTTGTaGTATACACCGTACAACCAT +
Preference number: 4 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNRINHL*YTPYNH
Trigger: ATGGTTGTACGGTGTATAGCACAAATGGTTAATTCT...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp GGGGGTTCGGCCTCGCCAGAGGTGGGACGCCAAGTCAGAAGCGCGTaGGGAATTGTGGTTTTGAAGATATCCAGGGTGCAGTTACACGTT +
Preference number: 5 (lower is better)
Translates to: GGSASPEVGRQVRSA*GIVVLKISRVQLHV
Trigger: AACGTGTAACTGCACCCTGGATATCTTCAAAACCACAATTCCTCACGCGCTTCTGACTTGGCGTCCCACCTCTGGCGAGGCCGAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGCTTGGACTTGCCTTaGAAGCCTGCTTTCCACAGA +
Preference number: 5 (lower is better)
Translates to: GNFRTCHSVGSPCLEDREGLDLP*KPAFHR
Trigger: TCTGTGGAAAGCAGGCTTCAAAGGCAAGTCCAAGCC...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAGGACCCTAAAGATGTTTCAGCTGCAGTaGCCTGATCAGCTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: YLPQCGLTLLRGQGRTLKMFQLQ*PDQLLS
Trigger: AGACAGAAGCTGATCAGGCAACTGCAGCTGAAACAT...CTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACACTATGCGGGGACATTaGGACTGGCATGCCAACTCA +
Preference number: 5 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDTMRGH*DWHANS
Trigger: TGAGTTGGCATGCCAGTCCAAATGTCCCCGCATAGT...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAAGTGCTTTAGCCGTCTaGGCCATCTGTTCCATTTCT +
Preference number: 5 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRESALAV*AICSIS
Trigger: AGAAATGGAACAGATGGCCAAGACGGCTAAAGCACT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp GCCCTAGACCAACAAATTCATCTGGAGCCTGATCTTTTGTCCCAGTaGGAGACCCTTCTCTGCCTCTCACAGTCCCAGAAATGTACCGAG +
Preference number: 5 (lower is better)
Translates to: ALDQQIHLEPDLLSQ*ETLLCLSQSQKCTE
Trigger: CTCGGTACATTTCTGGGACTGTGAGAGGCAGAGAAGGGTCTCTCACTGGGACAAAAGATCAGGCTCCAGATGAATTTGTTGGTCTAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCTGCCTGATCCAGCTTTaGCTTCTCCATGAGGAGGGC +
Preference number: 5 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSCLIQL*LLHEEG
Trigger: GCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCA...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAAATCTGTTTGAGGACCTaGGAAGCAGCCACATATTGT +
Preference number: 5 (lower is better)
Translates to: GNFRTCHSVGSPCLEDREICLRT*EAATYC
Trigger: ACAATATGTGGCTGCTTCCAAGGTCCTCAAACAGAT...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp GGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGCTTAGAGGACAGGGAACTGACAGTGGTTTCATaGACAGCTTACACAATGACC +
Preference number: 5 (lower is better)
Translates to: GNFRTCHSVGSPCLEDRELTVVS*TAYTMT
Trigger: GGTCATTGTGTAAGCTGTCAATGAAACCACTGTCAG...TTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCGCCTTCTTCACTTCCTaGTCGGCCAGAATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSAFFTS*SARIFS
Trigger: GGAGAAGATTCTGGCCGACAAGGAAGTGAAGAAGGC...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACAGGGTTTGTCCTTGGTaGCACTCTAGGTATCTTGCA +
Preference number: 5 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDRVCPW*HSRYLA
Trigger: TGCAAGATACCTAGAGTGCAACCAAGGACAAACCCT...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACCGTGCTAACTGCTCATaGTCTTGTTGTACACACCAG +
Preference number: 5 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDRANCS*SCCTHQ
Trigger: CTGGTGTGTACAACAAGACAATGAGCAGTTAGCACG...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp AGAGGCTACTTCAGTATCATCACAGTCTTGGAGACCCACACTGAATaGAGCCAGAAAAGGTGTCCAAGCCAACTTAAACATCGGCCTCAC +
Preference number: 5 (lower is better)
Translates to: RGYFSIITVLETHTE*SQKRCPSQLKHRPH
Trigger: GTGAGGCCGATGTTTAAGTTGGCTTGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAGACTGTGATGATACTGAAGTAGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CCA 90 bp ATCCCTTCTAGGCAAAGAGAGGCTACTTCAGTATCATCACAGTCTTaGAGACCCACACTGAATGCAGCCAGAAAAGGTGTCCAAGCCAAC +
Preference number: 5 (lower is better)
Translates to: IPSRQREATSVSSQS*RPTLNAARKGVQAN
Trigger: GTTGGCTTGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAGACTGTGATGATACTGAAGTAGCCTCTCTTTGCCTAGAAGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS-3UTR CAA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTTGGCTGCCCCTTCCTaGGGCAATTTTCGACAGGTC +
Preference number: 5 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGLAAPS*GNFRQV
Trigger: GACCTGTCGAAAATTGCCCAAGGAAGGGGCAGCCAA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp CAGAGGTGGGACGCCAAGTCAGAAGCGCGTGAGGAATTGTGGTTTTaGAGATATCCAGGGTGCAGTTACACGTTTTATCCCAGATTTCAA +
Preference number: 5 (lower is better)
Translates to: QRWDAKSEAREELWF*RYPGCSYTFYPRFQ
Trigger: TTGAAATCTGGGATAAAACGTGTAACTGCACCCTGGATATCTTCAAAACCACAATTCCTCACGCGCTTCTGACTTGGCGTCCCACCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAATCTCTTTCCATTTGTTaGGCCTCCTGTAATGCTTGG +
Preference number: 5 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQSLSIC*ASCNAW
Trigger: CCAAGCATTACAGGAGGCCAAACAAATGGAAAGAGA...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTGGGAAGAAGACAATGTaGTCGATGGTCTGGATGAGT +
Preference number: 5 (lower is better)
Translates to: TSILLWVISVPATVWAHPGKKTM*SMVWMS
Trigger: ACTCATCCAGACCATCGACAACATTGTCTTCTTCCC...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CTTGACAGGCATCAGCCACAACAGATTCAGGGCACAGCAAGCCCTCAAAATGACTCTCTAAAAACTTCATaGATAGCTGCCTCAGAGAGT +
Preference number: 5 (lower is better)
Translates to: LDRHQPQQIQGTASPQNDSLKTS*IAASES
Trigger: ACTCTCTGAGGCAGCTATCAATGAAGTTTTTAGAGA...GTCATTTTGAGGGCTTGCTGTGCCCTGAATCTGTTGTGGCTGATGCCTGTCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTAGATTGGGCTTGGACTaGCCTTTGAAGCCTGCTTTC +
Preference number: 5 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLRLGLD*PLKPAF
Trigger: GAAAGCAGGCTTCAAAGGCAAGTCCAAGCCCAATCT...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp ACTGTCACTACCATCTTCTACAGTTCCAGTGTTGCCTTCTGTACTTaGACTGATAGCCATCCCTTCTCCCATGTCTCCAACAATGATGTT +
Preference number: 5 (lower is better)
Translates to: TVTTIFYSSSVAFCT*TDSHPFSHVSNNDV
Trigger: AACATCATTGTTGGAGACATGGGAGAAGGGATGGCTATCAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGTAGTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS-3UTR CAA 90 bp ACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCACCCTTGGGATTCCATTTGCTaGGATGTTTTCACTGTCACT +
Preference number: 5 (lower is better)
Translates to: TSILLWVISVPATVWAHPWDSIC*DVFTVT
Trigger: AGTGACAGTGAAAACATCCAAGCAAATGGAATCCCA...AGGGTGAGCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACACTCATACCAAGTTCTaGGCTGCCCCTTCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNTHTKF*AAPSLG
Trigger: GCCCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGT...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAACATTTTTCAGGTAGGAAGCCTCTGCTGCAGGATCCTTTCACAGAGCAGAGCAAGCATCCCTTGTTCTaGGAGGTATTGTATTCCTCT +
Preference number: 5 (lower is better)
Translates to: KHFSGRKPLLQDPFTEQSKHPLF*EVLYSS
Trigger: AGAGGAATACAATACCTCCAAGAACAAGGGATGCTT...GCTCTGCTCTGTGAAAGGATCCTGCAGCAGAGGCTTCCTACCTGAAAAATGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTGGTGCCAAGCATCCCTaGTTCTTGGAGGTATTGTAT +
Preference number: 5 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLGAKHP*FLEVLY
Trigger: ATACAATACCTCCAAGAACAAGGGATGCTTGGCACC...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp TTCGCAGGCTCAATTCCTGAACATTACTCATACCAAGTTCTTGGCTaGCCCTTCCTTGGGCAATTTTCGACAGGTCATTTACTAGTCTTT +
Preference number: 5 (lower is better)
Translates to: FAGSIPEHYSYQVLG*PFLGQFSTGHLLVF
Trigger: AAAGACTAGTAAATGACCTGTCGAAAATTGCCCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGTAATGTTCAGGAATTGAGCCTGCGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 90 bp ATGGCGAATAAGTCGGATTGCTTCCATACTTGTGTCTGGGAAAGCTaGATTACATGCGAATTCAGACAAACACTTCACTGCATCCTGGAA +
Preference number: 5 (lower is better)
Translates to: MANKSDCFHTCVWES*ITCEFRQTLHCILE
Trigger: TTCCAGGATGCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp ACTTGTGTACTCCTTGAAAGCCTGCGGTCTATCAGACACATATTTTaGACAATGGCGAATAAGTCGGATTGCTTCCATACTTGTGTCTGG +
Preference number: 5 (lower is better)
Translates to: TCVLLESLRSIRHIF*TMANKSDCFHTCVW
Trigger: CCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTGTGCAAAATATGTGTCTGATAGACCGCAGGCTTTCAAGGAGTACACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 90 bp CAGATAACCTGTCGTCAGGTAACGATGGTGTATATGCAACAGAAATaGGTGTTCCTGGGATTCCATTTGCTTGGATGTTTTCACTGTCAC +
Preference number: 5 (lower is better)
Translates to: QITCRQVTMVYMQQK*VFLGFHLLGCFHCH
Trigger: GTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCATCGTTACCTGACGACAGGTTATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS-3UTR CAA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATAACTCCTTCATCTGTTaGAGGACCTTGGAAGCAGCC +
Preference number: 5 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYNSFIC*RTLEAA
Trigger: GGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGTT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACGCATGTCCTCACAGCTaGCAGCACAGTTCCTTCATG +
Preference number: 5 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNACPHS*QHSSFM
Trigger: CATGAAGGAACTGTGCTGCAAGCTGTGAGGACATGC...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCGTAACTCATGAGACTTaGGATCTGGTGGTCCATCTG +
Preference number: 5 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCVTHET*DLVVHL
Trigger: CAGATGGACCACCAGATCCAAAGTCTCATGAGTTAC...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCGGGCATGGTTACAAGTaGTTGTCATCCATTCAGCTT +
Preference number: 5 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGGHGYK*LSSIQL
Trigger: AAGCTGAATGGATGACAACAACTTGTAACCATGCCC...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCCATCCTCCTTCTTGCTaGTGGCTGGGAAGAAGACAA +
Preference number: 5 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLHPPSC*WLGRRQ
Trigger: TTGTCTTCTTCCCAGCCACAAGCAAGAAGGAGGATG...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TTTCTACCTTGGTGGATCCCCTCCTGTTGTCATCTTGACAGGCATCAGCCACAAGCAGTCCTCTGTTCATaGTTGGAATTAAATGCTTTT +
Preference number: 5 (lower is better)
Translates to: FLPWWIPSCCHLDRHQPQAVLCS*LELNAF
Trigger: AAAAGCATTTAATTCCAACAATGAACAGAGGACTGC...TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTTCCTGTTTTAGAAGATaGGGCTTGGACTTGCCTTTG +
Preference number: 5 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLSCFRR*GLDLPL
Trigger: CAAAGGCAAGTCCAAGCCCAATCTTCTAAAACAGGA...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp CGATGGTGTATATGCAACAGAAATGGGTGTTCCTGGGATTCCATTTaGTTGGATGTTTTCACTGTCACTACCATCTTCTACAGTTCCAGT +
Preference number: 5 (lower is better)
Translates to: RWCICNRNGCSWDSI*LDVFTVTTIFYSSS
Trigger: ACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCATCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 90 bp GTCTGGGAAAGCTGCATTACATGCGAATTCAGACAAACACTTCACTaGATCCTGGAAAGAATCAATGGTGGCCGGAAAGTGTTTTTCAAA +
Preference number: 5 (lower is better)
Translates to: VWESCITCEFRQTLH*ILERINGGRKVFFK
Trigger: TTTGAAAAACACTTTCCGGCCACCATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp CGGTCTATCAGACACATATTTTGCACAATGGCGAATAAGTCGGATTaGTTCCATACTTGTGTCTGGGAAAGCTGCATTACATGCGAATTC +
Preference number: 5 (lower is better)
Translates to: RSIRHIFCTMANKSD*FHTCVWESCITCEF
Trigger: GAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTGTGCAAAATATGTGTCTGATAGACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 90 bp TTTTGCACAATGGCGAATAAGTCGGATTGCTTCCATACTTGTGTCTaGGAAAGCTGCATTACATGCGAATTCAGACAAACACTTCACTGC +
Preference number: 5 (lower is better)
Translates to: FCTMANKSDCFHTCV*ESCITCEFRQTLHC
Trigger: GCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTGTGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCTCCATGAGGAGGGCTTaGTTTCTCAGTTTCAACTTT +
Preference number: 5 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGSMRRA*FLSFNF
Trigger: AAAGTTGAAACTGAGAAACAAAGCCCTCCTCATGGA...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCAGCAACTACCACACTTaGAGAGCTGGTTTCTCCAAT +
Preference number: 5 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCSNYHT*RAGFSN
Trigger: ATTGGAGAAACCAGCTCTCAAAGTGTGGTAGTTGCT...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCACAGTGTGGGCCCATATCTCGAATTGTaGGAGACCTGTTTCGTTTCA +
Preference number: 5 (lower is better)
Translates to: SLYIYTSLGNFRTCHSVGPYLEL*ETCFVS
Trigger: TGAAACGAAACAGGTCTCCAACAATTCGAGATATGG...GCCCACACTGTGGCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATGGATTGCTTCCATACTaGTGTCTGGGAAAGCTGCAT +
Preference number: 5 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYGLLPY*CLGKLH
Trigger: ATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCC...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp TTGAACAGTTGTTGTGATGTTAAAAAGCGGTACATTCCTTGGTCTTaGGTATCAACTCGAACATCGAAGTCTACTGCATCTCTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: LNSCCDVKKRYIPWS*VSTRTSKSTASLWA
Trigger: AGCCCAGAGAGATGCAGTAGACTTCGATGTTCGAGTTGATACTCAAGACCAAGGAATGTACCGCTTTTTAACATCACAACAACTGTTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp ATCTTTCTTCTTGATGTAAGAACTGAGCTATATCTTCGGGTGTGGTaGCAAGCATCCCTTGTTCTTGGAGGTATTGTATTCCTCTCTTTG +
Preference number: 5 (lower is better)
Translates to: IFLLDVRTELYLRVW*QASLVLGGIVFLSL
Trigger: CAAAGAGAGGAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACCCGAAGATATAGCTCAGTTCTTACATCAAGAAGAAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 90 bp AAGTCGGATTGCTTCCATACTTGTGTCTGGGAAAGCTGCATTACATaGGAATTCAGACAAACACTTCACTGCATCCTGGAAAGAATCAAT +
Preference number: 5 (lower is better)
Translates to: KSDCFHTCVWESCIT*EFRQTLHCILERIN
Trigger: ATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAGAGAGTGAGTATGTCACAGGTAGGTCTTGTCAGCAGGGATGTTTTCTACCTTATACAGAAGTCGTCTTaGCTTTTCACTGGCTACATT +
Preference number: 5 (lower is better)
Translates to: KRVSMSQVGLVSRDVFYLIQKSS*LFTGYI
Trigger: AATGTAGCCAGTGAAAAGCAAAGACGACTTCTGTAT...AAGGTAGAAAACATCCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAAAGCGGTACATTCCTaGGTCTTGAGTATCAACTCG +
Preference number: 5 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLKAVHS*VLSINS
Trigger: CGAGTTGATACTCAAGACCAAGGAATGTACCGCTTT...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp GCATTAATAAACATCTCATTTGTCCTGAAAACAGGTCCTGCATTCTaGAGAATGGACAGAAGCAACTGCAATGAAAGAATCTTGGACCGT +
Preference number: 5 (lower is better)
Translates to: ALINISFVLKTGPAF*RMDRSNCNERILDR
Trigger: ACGGTCCAAGATTCTTTCATTGCAGTTGCTTCTGTCCATTCTGCAGAATGCAGGACCTGTTTTCAGGACAAATGAGATGTTTATTAATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CCA 90 bp TGCAAACAATCTAGAGATGTACTAACTATGCGGGGACATTTGGACTaGCATGCCAACTCAAAGGGTAAAAAGTACTTGTCTGCTTCAATA +
Preference number: 5 (lower is better)
Translates to: CKQSRDVLTMRGHLD*HANSKGKKYLSASI
Trigger: TATTGAAGCAGACAAGTACTTTTTACCCTTTGAGTTGGCATGCCAGTCCAAATGTCCCCGCATAGTTAGTACATCTCTAGATTGTTTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS-3UTR CAA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATAGGCTCTGTATCATCTaGGAGACTTTTATCCACATC +
Preference number: 5 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYRLCII*ETFIHI
Trigger: GATGTGGATAAAAGTCTCCAAGATGATACAGAGCCT...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCATGAGACTCCGTTTTTaGAGAGTGCAACACATAGAT +
Preference number: 5 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCMRLRF*RVQHID
Trigger: ATCTATGTGTTGCACTCTCAAAAAACGGAGTCTCAT...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCCAACCATATCTCGAATaGTTGGAGACCTGTTTCGTT +
Preference number: 5 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLQPYLE*LETCFV
Trigger: AACGAAACAGGTCTCCAACAATTCGAGATATGGTTG...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp TCGCAGAAGCTCAGTCTTTACATCTATACTTCTTTGGGTAATTTCCGTACCTGCCTGAGAATTAACCATTaGTGCTATACACCGTACAAC +
Preference number: 5 (lower is better)
Translates to: SQKLSLYIYTSLGNFRTCLRINH*CYTPYN
Trigger: GTTGTACGGTGTATAGCACAAATGGTTAATTCTCAG...GCAGGTACGGAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp AAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCAGTCTTTACATCTATGTACATTCCTTGGTCTaGAGTATCAACTCGAACATC +
Preference number: 5 (lower is better)
Translates to: KYSSPELYFSQKLSLYIYVHSLV*SINSNI
Trigger: GATGTTCGAGTTGATACTCAAGACCAAGGAATGTAC...ATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp GGAAAGTGTTTTTCAAATACAAGAGTGACAATGTGCCCTGTTGTCTaGAATGCAAGTTCTACTATGCTTTCATCTTGGTCTGATGCAGCT +
Preference number: 5 (lower is better)
Translates to: GKCFSNTRVTMCPVV*NASSTMLSSWSDAA
Trigger: AGCTGCATCAGACCAAGATGAAAGCATAGTAGAACTTGCATTTCAGACAACAGGGCACATTGTCACTCTTGTATTTGAAAAACACTTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 90 bp AAAGCTGCATTACATGCGAATTCAGACAAACACTTCACTGCATCCTaGAAAGAATCAATGGTGGCCGGAAAGTGTTTTTCAAATACAAGA +
Preference number: 5 (lower is better)
Translates to: KAALHANSDKHFTAS*KESMVAGKCFSNTR
Trigger: TCTTGTATTTGAAAAACACTTTCCGGCCACCATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCCATGGTTACAAGTTGTaGTCATCCATTCAGCTTTCT +
Preference number: 5 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLHGYKL*SSIQLS
Trigger: AGAAAGCTGAATGGATGACAACAACTTGTAACCATG...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp ACATTTTATCCTTCAAAATACAGCTCTCCTGAGTTGTACTTCTCGCAGAAGCTCTTTGTTCTGGGAATTTaGCTGTGGATTTCACTTTGC +
Preference number: 5 (lower is better)
Translates to: TFYPSKYSSPELYFSQKLFVLGI*LWISLC
Trigger: GCAAAGTGAAATCCACAGCAAAATTCCCAGAACAAA...GAGCTTCTGCGAGAAGTACAACTCAGGAGAGCTGTATTTTGAAGGATAAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS-3UTR CAA 90 bp CAGAGCACAGTTCACAGTATGAATACATTTCCAGTAAATCTAACCTCCCAAAACAAGCAGTCCAGTAGCTaGAACAGTTGTTGTGATGTT +
Preference number: 5 (lower is better)
Translates to: QSTVHSMNTFPVNLTSQNKQSSS*NSCCDV
Trigger: AACATCACAACAACTGTTCAAGCTACTGGACTGCTT...GTTTTGGGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAACTGTGCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp ATGCTTTTGCAAATCTATGCGACTCTAATAAGCAGTCCAGTAGCTTaGACAGTTGTTGTGATGTTAAAAAGCGGTACATTCCTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: MLLQIYATLISSPVA*TVVVMLKSGTFLGL
Trigger: AAGACCAAGGAATGTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTGCAAAAGCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 90 bp GCAGTCCTCTGTTCATTGTTGGAATTAAATGCTTTTGCAAATCTATaGGACTCTAATAAGCAGTCCAGTAGCTTGAACAGTTGTTGTGAT +
Preference number: 5 (lower is better)
Translates to: AVLCSLLELNAFANL*DSNKQSSSLNSCCD
Trigger: ATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTGCAAAAGCATTTAATTCCAACAATGAACAGAGGACTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp ACAGAAACCAGTGGTGCTTGCTGTCTGTTATCTGAAGATCTTGGTTaGATAGAATCATGTATGTCTACAGATTTTTGTGATATTGCATCC +
Preference number: 5 (lower is better)
Translates to: TETSGACCLLSEDLG*IESCMSTDFCDIAS
Trigger: GGATGCAATATCACAAAAATCTGTAGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACTGGTTTCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 90 bp ACTCACAGTAGAAACAGAAACCAGTGGTGCTTGCTGTCTGTTATCTaGAGATCTTGGTTGAATAGAATCATGTATGTCTACAGATTTTTG +
Preference number: 5 (lower is better)
Translates to: THSRNRNQWCLLSVI*RSWLNRIMYVYRFL
Trigger: CAAAAATCTGTAGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACTGGTTTCTGTTTCTACTGTGAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 72 bp GCCTCGCCAGAGGTGGGACGCCAAGTCAGAAGCGCGTaGGGAATTGTGGTTTTGAAGATATCCAGGGTGCAG +
Preference number: 6 (lower is better)
Translates to: ASPEVGRQVRSA*GIVVLKISRVQ
Trigger: CTGCACCCTGGATATCTTCAAAACCACAATTCCTCACGCGCTTCTGACTTGGCGTCCCACCTCTGGCGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 72 bp ACCATCTTCTACAGTTCCAGTGTTGCCTTCTGTACTTaGACTGATAGCCATCCCTTCTCCCATGTCTCCAAC +
Preference number: 6 (lower is better)
Translates to: TIFYSSSVAFCT*TDSHPFSHVSN
Trigger: GTTGGAGACATGGGAGAAGGGATGGCTATCAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp TGCTGCTGCTGCCGATGTCTTTCTCTTTCCATTTGTTaGGCCTCCTGTAATGCTTGGTTTTCCATGCGTGCA +
Preference number: 6 (lower is better)
Translates to: CCCCRCLSLSIC*ASCNAWFSMRA
Trigger: TGCACGCATGGAAAACCAAGCATTACAGGAGGCCAAACAAATGGAAAGAGAAAGACATCGGCAGCAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp CAGGCTCAATTCCTGAACATTACTCATACCAAGTTCTaGGCTGCCCCTTCCTTGGGCAATTTTCGACAGGTC +
Preference number: 6 (lower is better)
Translates to: QAQFLNITHTKF*AAPSLGNFRQV
Trigger: GACCTGTCGAAAATTGCCCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGTAATGTTCAGGAATTGAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp GCTTGGATGTTTTCACTGTCACTACCATCTTCTACAGTTCCAGTGTaGCCTTCTGTACTTGCACTGATAGCCATCCCTTCTCCCATGTCT +
Preference number: 6 (lower is better)
Translates to: AWMFSLSLPSSTVPV*PSVLALIAIPSPMS
Trigger: AGACATGGGAGAAGGGATGGCTATCAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACATCCAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS TCA 72 bp GCACCAGGTGAAGGTCCTGAAGAATTTCCAGATTCCTaGGTATCATTGGAGGAGACAGATAACCTGTCGTCA +
Preference number: 6 (lower is better)
Translates to: APGEGPEEFPDS*VSLEETDNLSS
Trigger: TGACGACAGGTTATCTGTCTCCTCCAATGATACTCAGGAATCTGGAAATTCTTCAGGACCTTCACCTGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp TTGATTTCACTGGTGGAAGGGTGCCTGATCCAGCTTTaGCTTCTCCATGAGGAGGGCTTTGTTTCTCAGTTT +
Preference number: 6 (lower is better)
Translates to: LISLVEGCLIQL*LLHEEGFVSQF
Trigger: AAACTGAGAAACAAAGCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACCAGTGAAATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp CCTTGTGGATCCGGTGAATATTCTATCCACAGCAACTACCACACTTaGAGAGCTGGTTTCTCCAATAGACTCCTGAATACTGGCTATCTG +
Preference number: 6 (lower is better)
Translates to: PCGSGEYSIHSNYHT*RAGFSNRLLNTGYL
Trigger: CAGATAGCCAGTATTCAGGAGTCTATTGGAGAAACCAGCTCTCAAAGTGTGGTAGTTGCTGTGGATAGAATATTCACCGGATCCACAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 72 bp GGTGGAAGGGTGCCTGATCCAGCTTTTGCTTCTCCATaGGGAGGGCTTTGTTTCTCAGTTTCAACTTTTATT +
Preference number: 6 (lower is better)
Translates to: GGRVPDPAFASP*GGLCFSVSTFI
Trigger: AATAAAAGTTGAAACTGAGAAACAAAGCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CCA 72 bp GCAGAATGGACAGAAGCAACTGCAATGAAAGAATCTTaGACCGTAACTCATGAGACTTTGGATCTGGTGGTC +
Preference number: 6 (lower is better)
Translates to: AEWTEATAMKES*TVTHETLDLVV
Trigger: GACCACCAGATCCAAAGTCTCATGAGTTACGGTCCAAGATTCTTTCATTGCAGTTGCTTCTGTCCATTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp CTGAGCTATATCTTCGGGTGTGGTGCCAAGCATCCCTaGTTCTTGGAGGTATTGTATTCCTCTCTTTGGTTT +
Preference number: 6 (lower is better)
Translates to: LSYIFGCGAKHP*FLEVLYSSLWF
Trigger: AAACCAAAGAGAGGAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACCCGAAGATATAGCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp CTGGATTATCAGTGCCAGACATCTGTGTACTGTAGCTaGCAATTCCTGATGATGATGTGGATTCTAAGGAGT +
Preference number: 6 (lower is better)
Translates to: LDYQCQTSVYCS*QFLMMMWILRS
Trigger: ACTCCTTAGAATCCACATCATCATCAGGAATTGGCAGCTACAGTACACAGATGTCTGGCACTGATAATCCAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp CTTGATGTAAGAACTGAGCTATATCTTCGGGTGTGGTaGCAAGCATCCCTTGTTCTTGGAGGTATTGTATTC +
Preference number: 6 (lower is better)
Translates to: LDVRTELYLRVW*QASLVLGGIVF
Trigger: GAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACCCGAAGATATAGCTCAGTTCTTACATCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp TTCAGTATCATCACAGTCTTGGAGACCCACACTGAATaGAGCCAGAAAAGGTGTCCAAGCCAACTTAAACAT +
Preference number: 6 (lower is better)
Translates to: FSIITVLETHTE*SQKRCPSQLKH
Trigger: ATGTTTAAGTTGGCTTGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAGACTGTGATGATACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp AAGTCGGATTGCTTCCATACTTGTGTCTGGGAAAGCTaGATTACATGCGAATTCAGACAAACACTTCACTGC +
Preference number: 6 (lower is better)
Translates to: KSDCFHTCVWES*ITCEFRQTLHC
Trigger: GCAGTGAAGTGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 72 bp CTCCTTGAAAGCCTGCGGTCTATCAGACACATATTTTaGACAATGGCGAATAAGTCGGATTGCTTCCATACT +
Preference number: 6 (lower is better)
Translates to: LLESLRSIRHIF*TMANKSDCFHT
Trigger: AGTATGGAAGCAATCCGACTTATTCGCCATTGTGCAAAATATGTGTCTGATAGACCGCAGGCTTTCAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 72 bp TTTTCACTGTCACTACCATCTTCTACAGTTCCAGTGTaGCCTTCTGTACTTGCACTGATAGCCATCCCTTCT +
Preference number: 6 (lower is better)
Translates to: FSLSLPSSTVPV*PSVLALIAIPS
Trigger: AGAAGGGATGGCTATCAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp ACGATGGTGTATATGCAACAGAAATGGGTGTTCCTGGGATTCCATTaGCTTGGATGTTTTCACTGTCACTACCATCTTCTACAGTTCCAG +
Preference number: 6 (lower is better)
Translates to: TMVYMQQKWVFLGFH*LGCFHCHYHLLQFQ
Trigger: CTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCATCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp TCAATTCCTGAACATTACTCATACCAAGTTCTTGGCTaGCCCTTCCTTGGGCAATTTTCGACAGGTCATTTA +
Preference number: 6 (lower is better)
Translates to: SIPEHYSYQVLG*PFLGQFSTGHL
Trigger: TAAATGACCTGTCGAAAATTGCCCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGTAATGTTCAGGAATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CCA 72 bp ATGGCGAATAAGTCGGATTGCTTCCATACTTGTGTCTaGGAAAGCTGCATTACATGCGAATTCAGACAAACA +
Preference number: 6 (lower is better)
Translates to: MANKSDCFHTCV*ESCITCEFRQT
Trigger: TGTTTGTCTGAATTCGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 72 bp ATCATGTGTTTGGGGCTCAAGATCCCCTTCATGCTCTaGGTTTATATGATCAACAGTCTGAGGTGGCAAATA +
Preference number: 6 (lower is better)
Translates to: IMCLGLKIPFML*VYMINSLRWQI
Trigger: TATTTGCCACCTCAGACTGTTGATCATATAAACCAAGAGCATGAAGGGGATCTTGAGCCCCAAACACATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp TCCGGTGAATATTCTATCCACAGCAACTACCACACTTaGAGAGCTGGTTTCTCCAATAGACTCCTGAATACT +
Preference number: 6 (lower is better)
Translates to: SGEYSIHSNYHT*RAGFSNRLLNT
Trigger: AGTATTCAGGAGTCTATTGGAGAAACCAGCTCTCAAAGTGTGGTAGTTGCTGTGGATAGAATATTCACCGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 90 bp AATTTGTCTTTGATTTCACTGGTGGAAGGGTGCCTGATCCAGCTTTaGCTTCTCCATGAGGAGGGCTTTGTTTCTCAGTTTCAACTTTTA +
Preference number: 6 (lower is better)
Translates to: NLSLISLVEGCLIQL*LLHEEGFVSQFQLL
Trigger: TAAAAGTTGAAACTGAGAAACAAAGCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACCAGTGAAATCAAAGACAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp AGTTTCTGCAAACAATCTAGAGATGTACTAACTATGCGGGGACATTaGGACTGGCATGCCAACTCAAAGGGTAAAAAGTACTTGTCTGCT +
Preference number: 6 (lower is better)
Translates to: SFCKQSRDVLTMRGH*DWHANSKGKKYLSA
Trigger: AGCAGACAAGTACTTTTTACCCTTTGAGTTGGCATGCCAGTCCAAATGTCCCCGCATAGTTAGTACATCTCTAGATTGTTTGCAGAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp TGGTGTATATGCAACAGAAATGGGTGTTCCTGGGATTCCATTTGCTaGGATGTTTTCACTGTCACTACCATCTTCTACAGTTCCAGTGTT +
Preference number: 6 (lower is better)
Translates to: WCICNRNGCSWDSIC*DVFTVTTIFYSSSV
Trigger: AACACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp ATATGCAACAGAAATGGGTGTTCCTGGGATTCCATTTaGTTGGATGTTTTCACTGTCACTACCATCTTCTAC +
Preference number: 6 (lower is better)
Translates to: ICNRNGCSWDSI*LDVFTVTTIFY
Trigger: GTAGAAGATGGTAGTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS GCA 72 bp GCAAGCTCTCCTTTCTCTAAAAACTTCATTGATAGCTaGCTCAGAGAGTCTACTGCAAATATGGCTACATCT +
Preference number: 6 (lower is better)
Translates to: ASSPFSKNFIDS*LRESTANMATS
Trigger: AGATGTAGCCATATTTGCAGTAGACTCTCTGAGGCAGCTATCAATGAAGTTTTTAGAGAAAGGAGAGCTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 72 bp CAATGTGCCCTGTTGTCTGAAATGCAAGTTCTACTATaGTTTCATCTTGGTCTGATGCAGCTAGATGGAATA +
Preference number: 6 (lower is better)
Translates to: QCALLSEMQVLL*FHLGLMQLDGI
Trigger: TATTCCATCTAGCTGCATCAGACCAAGATGAAAGCATAGTAGAACTTGCATTTCAGACAACAGGGCACATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 72 bp AGACACATATTTTGCACAATGGCGAATAAGTCGGATTaGTTCCATACTTGTGTCTGGGAAAGCTGCATTACA +
Preference number: 6 (lower is better)
Translates to: RHIFCTMANKSD*FHTCVWESCIT
Trigger: TGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTGTGCAAAATATGTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 72 bp ATATCTTCGGGTGTGGTGCCAAGCATCCCTTGTTCTTaGAGGTATTGTATTCCTCTCTTTGGTTTCTTATTA +
Preference number: 6 (lower is better)
Translates to: ISSGVVPSIPCS*RYCIPLFGFLL
Trigger: TAATAAGAAACCAAAGAGAGGAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACCCGAAGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp AAACAATCTAGAGATGTACTAACTATGCGGGGACATTaGGACTGGCATGCCAACTCAAAGGGTAAAAAGTAC +
Preference number: 6 (lower is better)
Translates to: KQSRDVLTMRGH*DWHANSKGKKY
Trigger: GTACTTTTTACCCTTTGAGTTGGCATGCCAGTCCAAATGTCCCCGCATAGTTAGTACATCTCTAGATTGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp TTTATCCACATCATGTGTTTGGGGCTCAAGATCCCCTTCATGCTCTaGGTTTATATGATCAACAGTCTGAGGTGGCAAATATCTAAGATG +
Preference number: 6 (lower is better)
Translates to: FIHIMCLGLKIPFML*VYMINSLRWQISKM
Trigger: CATCTTAGATATTTGCCACCTCAGACTGTTGATCATATAAACCAAGAGCATGAAGGGGATCTTGAGCCCCAAACACATGATGTGGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 90 bp AACATTACTGTTAAGCCCCTGGTTCTTACATCTAATTTGCATCTATaGATGATACAAGACAACTCAAAGAGGATCGGGAACCACCCTCTC +
Preference number: 6 (lower is better)
Translates to: NITVKPLVLTSNLHL*MIQDNSKRIGNHPL
Trigger: GAGAGGGTGGTTCCCGATCCTCTTTGAGTTGTCTTGTATCATCAATAGATGCAAATTAGATGTAAGAACCAGGGGCTTAACAGTAATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 90 bp TTGCCTTTGAAGCCTGCTTTCCACAGAGCAGTCCTCTGTTCATTGTaGGAATTAAATGCTTTTGCAAATCTATGCGACTCTAATAAGCAG +
Preference number: 6 (lower is better)
Translates to: LPLKPAFHRAVLCSL*ELNAFANLCDSNKQ
Trigger: CTGCTTATTAGAGTCGCATAGATTTGCAAAAGCATTTAATTCCAACAATGAACAGAGGACTGCTCTGTGGAAAGCAGGCTTCAAAGGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 90 bp GACTTGCCTTTGAAGCCTGCTTTCCACAGAGCAGTCCTCTGTTCATaGTTGGAATTAAATGCTTTTGCAAATCTATGCGACTCTAATAAG +
Preference number: 6 (lower is better)
Translates to: DLPLKPAFHRAVLCS*LELNAFANLCDSNK
Trigger: CTTATTAGAGTCGCATAGATTTGCAAAAGCATTTAATTCCAACAATGAACAGAGGACTGCTCTGTGGAAAGCAGGCTTCAAAGGCAAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 72 bp TGTTGTGATGTTAAAAAGCGGTACATTCCTTGGTCTTaGGTATCAACTCGAACATCGAAGTCTACTGCATCT +
Preference number: 6 (lower is better)
Translates to: CCDVKKRYIPWS*VSTRTSKSTAS
Trigger: AGATGCAGTAGACTTCGATGTTCGAGTTGATACTCAAGACCAAGGAATGTACCGCTTTTTAACATCACAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 72 bp TCTACTATGCTTTCATCTTGGTCTGATGCAGCTAGATaGAATACTGAGAAAATGTTCTTCCATCCTGAACGA +
Preference number: 6 (lower is better)
Translates to: STMLSSWSDAAR*NTEKMFFHPER
Trigger: TCGTTCAGGATGGAAGAACATTTTCTCAGTATTCCATCTAGCTGCATCAGACCAAGATGAAAGCATAGTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 72 bp TATATGCAACAGAAATGGGTGTTCCTGGGATTCCATTaGCTTGGATGTTTTCACTGTCACTACCATCTTCTA +
Preference number: 6 (lower is better)
Translates to: YMQQKWVFLGFH*LGCFHCHYHLL
Trigger: TAGAAGATGGTAGTGACAGTGAAAACATCCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS CAA 72 bp GTTAAGCCCCTGGTTCTTACATCTAATTTGCATCTATaGATGATACAAGACAACTCAAAGAGGATCGGGAAC +
Preference number: 6 (lower is better)
Translates to: VKPLVLTSNLHL*MIQDNSKRIGN
Trigger: GTTCCCGATCCTCTTTGAGTTGTCTTGTATCATCAATAGATGCAAATTAGATGTAAGAACCAGGGGCTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 90 bp TTCCAGCTGCACAACACATTTAATCAACAGGGCAGCAAACAATTTTaGTTCTGGGAATTTTGCTGTGGATTTCACTTTGCTAACTTCTTC +
Preference number: 6 (lower is better)
Translates to: FQLHNTFNQQGSKQF*FWEFCCGFHFANFF
Trigger: GAAGAAGTTAGCAAAGTGAAATCCACAGCAAAATTCCCAGAACAAAAATTGTTTGCTGCCCTGTTGATTAAATGTGTTGTGCAGCTGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 90 bp AATGCTTTTGCAAATCTATGCGACTCTAATAAGCAGTCCAGTAGCTaGAACAGTTGTTGTGATGTTAAAAAGCGGTACATTCCTTGGTCT +
Preference number: 6 (lower is better)
Translates to: NAFANLCDSNKQSSS*NSCCDVKKRYIPWS
Trigger: AGACCAAGGAATGTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTGCAAAAGCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 72 bp AGAAACAGAAACCAGTGGTGCTTGCTGTCTGTTATCTaGAGATCTTGGTTGAATAGAATCATGTATGTCTAC +
Preference number: 6 (lower is better)
Translates to: RNRNQWCLLSVI*RSWLNRIMYVY
Trigger: GTAGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACTGGTTTCTGTTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS TCA 72 bp CAAATCTATGCGACTCTAATAAGCAGTCCAGTAGCTTaGACAGTTGTTGTGATGTTAAAAAGCGGTACATTC +
Preference number: 6 (lower is better)
Translates to: QIYATLISSPVA*TVVVMLKSGTF
Trigger: GAATGTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 72 bp GCAAATCTATGCGACTCTAATAAGCAGTCCAGTAGCTaGAACAGTTGTTGTGATGTTAAAAAGCGGTACATT +
Preference number: 6 (lower is better)
Translates to: ANLCDSNKQSSS*NSCCDVKKRYI
Trigger: AATGTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CCA 72 bp TCTGTGTACTGTAGCTGCCAATTCCTGATGATGATGTaGATTCTAAGGAGTTTAAACTTCCATATCTGTTTA +
Preference number: 6 (lower is better)
Translates to: SVYCSCQFLMMM*ILRSLNFHICL
Trigger: TAAACAGATATGGAAGTTTAAACTCCTTAGAATCCACATCATCATCAGGAATTGGCAGCTACAGTACACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088615.11
ENSMUST00000131556.2
CDS TCA 72 bp AGTGGTGCTTGCTGTCTGTTATCTGAAGATCTTGGTTaGATAGAATCATGTATGTCTACAGATTTTTGTGAT +
Preference number: 6 (lower is better)
Translates to: SGACCLLSEDLG*IESCMSTDFCD
Trigger: ATCACAAAAATCTGTAGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS GCA 72 bp TGTTCATTGTTGGAATTAAATGCTTTTGCAAATCTATaGGACTCTAATAAGCAGTCCAGTAGCTTGAACAGT +
Preference number: 6 (lower is better)
Translates to: CSLLELNAFANL*DSNKQSSSLNS
Trigger: ACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCATAGATTTGCAAAAGCATTTAATTCCAACAATGAACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11
CDS CAA 72 bp AACATTACTGTTAAGCCCCTGGTTCTTACATCTAATTaGCATCTATTGATGATACAAGACAACTCAAAGAGG +
Preference number: 6 (lower is better)
Translates to: NITVKPLVLTSN*HLLMIQDNSKR
Trigger: CCTCTTTGAGTTGTCTTGTATCATCAATAGATGCAAATTAGATGTAAGAACCAGGGGCTTAACAGTAATGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088615.11