Pregenerated sensors for ARF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021877Ensembl transcript IDs: ENSMUST00000022429.9, ENSMUST00000112318.10, ENSMUST00000166075.8, ENSMUST00000167376.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCTTCATACTCTaGTTCTGGAGTTCATATTATGATAACTTGTTCTTGTTCTTCTTG | + |
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Preference number: 1 (lower is better) Translates to: MNHHWLSFISNPFIL*FWSSYYDNLFLFFL Trigger: CAAGAAGAACAAGAACAAGTTATCATAATATGAACTCCAGAAGCAGAGTATGAAGGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| 3UTR-3UTR TCA 90 bp | AGGCAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCTTGTTCTTCTTGATCTaGCCTTTGAACTTCATAGCT | + |
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Preference number: 2 (lower is better) Translates to: RQASSPMNHHWLSFISNPLFFLI*PLNFIA Trigger: AGCTATGAAGTTCAAAGGTCAGATCAAGAAGAACAA...GGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| 3UTR-3UTR GCA 90 bp | CGACGGTTCAAACGCGTCTACTTTGTCTTCTTACTTGCACTTGAGCTCATTTTAGGGAAGCAGGCATGGTaGTTTATAGCTGTAATCCTA | + |
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Preference number: 2 (lower is better) Translates to: RRFKRVYFVFLLALELILGKQAW*FIAVIL Trigger: TAGGATTACAGCTATAAAGCACCATGCCTGCTTCCC...TAAAATGAGCTCAAGTGCAAGTAAGAAGACAAAGTAGACGCGTTTGAACCGTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| 3UTR-3UTR GCA 90 bp | AACATTATTGTTTTGGGCTCAAAAACCACTCAGATCTGTCTAAAGGTGTCAGGATTTCTGCAGCACAGCTaGTCCTTCCTGGATTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: NIIVLGSKTTQICLKVSGFLQHS*SFLDSF Trigger: GAAAGAATCCAGGAAGGAGCAGCTGTGCTGCAGAAA...TCCTGACACCTTTAGACAGATCTGAGTGGTTTTTGAGCCCAAAACAATAATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166075.8 |
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| 3UTR-3UTR GCA 90 bp | AAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTTTAAAAAGGAGCAGCACTaGATCCTGCAGCTCATCTTC | + |
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Preference number: 2 (lower is better) Translates to: KTSFKRCNFCPNLSQISFKKEQH*ILQLIF Trigger: GAAGATGAGCTGCAGGATGCAGTGCTGCTCCTTTTT...AAAGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000166075.8 |
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| 3UTR CCA 72 bp | CAGGTACGTGAGGCAGGACTGCGTCGAGGTCAGTTCTaGTCTGGGTTACACAGTTCAAGGCCAGCTTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: QVREAGLRRGQF*SGLHSSRPAWA Trigger: AGCCCAAGCTGGCCTTGAACTGTGTAACCCAGACCAGAACTGACCTCGACGCAGTCCTGCCTCACGTACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCTTCGCAACCAGCACAGAATaGGCTATCAAATCCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: QASSPMNHHWLSFISNPFATSTE*AIKSKP Trigger: TGGTTTGGATTTGATAGCCAATTCTGTGCTGGTTGC...GAAGGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| 3UTR CCA 72 bp | TATACAAGGCAAGCTTCATCACCAATGAATCATCACTaGCTGAGCTTCATCAGCAACCCCTTCATACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: YTRQASSPMNHH*LSFISNPFILC Trigger: GCAGAGTATGAAGGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTGCCTTGTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| 3UTR CCA 72 bp | CAGTTCTGGTCTGGGTTACACAGTTCAAGGCCAGCTTaGGCTCAAAAAGAGGTCTTATTTTCCAAGTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: QFWSGLHSSRPA*AQKEVLFSKSS Trigger: TGAAGACTTGGAAAATAAGACCTCTTTTTGAGCCCAAGCTGGCCTTGAACTGTGTAACCCAGACCAGAACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| 3UTR GCA 72 bp | CACTGGCTGAGCTTCATCAGCAACCCCTTCATACTCTaGTTCTGGAGTTCATATTATGATAACTTGTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: HWLSFISNPFIL*FWSSYYDNLFL Trigger: CAAGAACAAGTTATCATAATATGAACTCCAGAAGCAGAGTATGAAGGGGTTGCTGATGAAGCTCAGCCAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| 3UTR TCA 72 bp | TACAAGCACAAAAGAGTATTCAAAGGGACGGGGACTTaGCTTGATCCCTTGCCTTTGCTCTTACTCATAAAA | + |
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Preference number: 3 (lower is better) Translates to: YKHKRVFKGTGT*LDPLPLLLLIK Trigger: TTTTATGAGTAAGAGCAAAGGCAAGGGATCAAGTCAAGTCCCCGTCCCTTTGAATACTCTTTTGTGCTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| 3UTR-3UTR CAA 90 bp | TCATCAGCAACCCCTTCATACTCTGCTTCTGGAGTTCATATTATGATAACTTGTGGATTTGGCCATACTTaGTTATGTAAGGAAATCAGT | + |
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Preference number: 3 (lower is better) Translates to: SSATPSYSASGVHIMITCGFGHT*LCKEIS Trigger: ACTGATTTCCTTACATAACAAAGTATGGCCAAATCC...ACAAGTTATCATAATATGAACTCCAGAAGCAGAGTATGAAGGGGTTGCTGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR GCA 90 bp | AGGCAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCAAAAAGGAGCAGCACTaGATCCTGCAGCTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: RQASSPMNHHWLSFISNPKKEQH*ILQLIF Trigger: GAAGATGAGCTGCAGGATGCAGTGCTGCTCCTTTTT...GGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR GCA 90 bp | TCAGTTCTGGTCTGGGTTACACAGTTCAAGGCCAGCTTGGGCTCAAAAAGAGGTAAAAAGGAGCAGCACTaGATCCTGCAGCTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: SVLVWVTQFKASLGSKRGKKEQH*ILQLIF Trigger: GAAGATGAGCTGCAGGATGCAGTGCTGCTCCTTTTT...ACCTCTTTTTGAGCCCAAGCTGGCCTTGAACTGTGTAACCCAGACCAGAACTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| CDS-3UTR GCA 90 bp | CAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCTTCTTTCTGCAGCACAGCTaGTCCTTCCTGGATTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: QASSPMNHHWLSFISNPFFLQHS*SFLDSF Trigger: GAAAGAATCCAGGAAGGAGCAGCTGTGCTGCAGAAA...GAAGGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR GCA 90 bp | ACAAGGCAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACTCCAGAAGCATTTTCTaGAGCACAGCTGCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TRQASSPMNHHWLSFISNSRSIF*STAAPS Trigger: GGAAGGAGCAGCTGTGCTGCAGAAAATGCTTCTGGA...GTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTGCCTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR GCA 90 bp | TGGTCTGGGTTACACAGTTCAAGGCCAGCTTGGGCTCAAAAAGAGGTCTTATTTTCCAGAAGCATTTTCTaGAGCACAGCTGCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: WSGLHSSRPAWAQKEVLFSRSIF*STAAPS Trigger: GGAAGGAGCAGCTGTGCTGCAGAAAATGCTTCTGGA...AAATAAGACCTCTTTTTGAGCCCAAGCTGGCCTTGAACTGTGTAACCCAGACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| 3UTR CAA 72 bp | TCAGTTCTGGTCTGGGTTACACAGTTCAAGGCCAGCTaGGGCTCAAAAAGAGGTCTTATTTTCCAAGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SVLVWVTQFKAS*GSKRGLIFQVF Trigger: GAAGACTTGGAAAATAAGACCTCTTTTTGAGCCCAAGCTGGCCTTGAACTGTGTAACCCAGACCAGAACTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167376.2 |
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| CDS-3UTR GCA 90 bp | TCATCAGCAACCCCTTCATACTCTGCTTCTGGAGTTCATATTATGATAACTTGTATCAAAATGCGCATCTaGTTCTTGCCGAACAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: SSATPSYSASGVHIMITCIKMRI*FLPNRR Trigger: GCGCCTGTTCGGCAAGAAGCAGATGCGCATTTTGAT...ACAAGTTATCATAATATGAACTCCAGAAGCAGAGTATGAAGGGGTTGCTGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR GCA 90 bp | ACAAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTATCAAAATGCGCATCTaGTTCTTGCCGAACAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: TKQVLNAVISAQTCLRYPIKMRI*FLPNRR Trigger: GCGCCTGTTCGGCAAGAAGCAGATGCGCATTTTGAT...AGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 ENSMUST00000166075.8 |
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| CDS-3UTR GCA 90 bp | ACAAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTTCCAGAAGCATTTTCTaGAGCACAGCTGCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TKQVLNAVISAQTCLRYPSRSIF*STAAPS Trigger: GGAAGGAGCAGCTGTGCTGCAGAAAATGCTTCTGGA...AGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 |
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| CDS-3UTR GCA 90 bp | AAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTTTATCAAAATGCGCATCTaGTTCTTGCCGAACAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: KTSFKRCNFCPNLSQISFIKMRI*FLPNRR Trigger: GCGCCTGTTCGGCAAGAAGCAGATGCGCATTTTGAT...AAAGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 ENSMUST00000166075.8 |
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| CDS-3UTR GCA 90 bp | ACAAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTTTTCTGCAGCACAGCTaGTCCTTCCTGGATTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: TKQVLNAVISAQTCLRYPFLQHS*SFLDSF Trigger: GAAAGAATCCAGGAAGGAGCAGCTGTGCTGCAGAAA...AGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 |
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| CDS-3UTR GCA 90 bp | ACAAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTAAAAAGGAGCAGCACTaGATCCTGCAGCTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: TKQVLNAVISAQTCLRYPKKEQH*ILQLIF Trigger: GAAGATGAGCTGCAGGATGCAGTGCTGCTCCTTTTT...AGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 |
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| CDS-3UTR CAA 90 bp | CAAGCTTCATCACCAATGAATCATCACTGGCTGAGCTTCATCAGCAACCCCTTCGTTTTGAAAGTTCATTaGACAGCCAATCCAGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: QASSPMNHHWLSFISNPFVLKVH*TANPVP Trigger: AGGGACTGGATTGGCTGTCAAATGAACTTTCAAAAC...GAAGGGGTTGCTGATGAAGCTCAGCCAGTGATGATTCATTGGTGATGAAGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022429.9 |
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| CDS-3UTR CAA 90 bp | ACAAAACAAGTTTTAAACGCTGTAATTTCTGCCCAAACCTGTCTCAGATATCCTGTTTTGAAAGTTCATTaGACAGCCAATCCAGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: TKQVLNAVISAQTCLRYPVLKVH*TANPVP Trigger: AGGGACTGGATTGGCTGTCAAATGAACTTTCAAAAC...AGGATATCTGAGACAGGTTTGGGCAGAAATTACAGCGTTTAAAACTTGTTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022429.9 ENSMUST00000112318.10 |
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