Pregenerated sensors for ARF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048076Ensembl transcript IDs: ENSMUST00000061242.8, ENSMUST00000163300.8
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTACCCTAGGTAACCGTGTGAGCACAAGTACAAGCACAATGCTATaGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCTAC | + |
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Preference number: 1 (lower is better) Translates to: PTLGNRVSTSTSTML*NAGDPKTGESRGLY Trigger: GTAGAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTCACACGGTTACCTAGGGTAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR TCA 90 bp | TTGTTCATCACCTTCTCTCCTGTTCCCACAGCGAAACAGGTGATCTaGTATCTAGCATTCAGGCCATTAACTGCAAAACCTACACTAGGC | + |
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Preference number: 1 (lower is better) Translates to: LFITFSPVPTAKQVI*YLAFRPLTAKPTLG Trigger: GCCTAGTGTAGGTTTTGCAGTTAATGGCCTGAATGCTAGATATCAGATCACCTGTTTCGCTGTGGGAACAGGAGAGAAGGTGATGAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCCTCCCGGAGGCCAGGTaGCCCTACACCCAAATCCCT | + |
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Preference number: 2 (lower is better) Translates to: STMLWNAGDPKTGESRGLLPEAR*PYTQIP Trigger: AGGGATTTGGGTGTAGGGGCACCTGGCCTCCGGGAG...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | GACCATGCAGCGGATGGTGGTTTGTTCATCACCTTCTCTCCTGTTCCCACAGCGCTCCCGGAGGCCAGGTaGCCCTACACCCAAATCCCT | + |
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Preference number: 2 (lower is better) Translates to: DHAADGGLFITFSPVPTALPEAR*PYTQIP Trigger: AGGGATTTGGGTGTAGGGGCACCTGGCCTCCGGGAG...CGCTGTGGGAACAGGAGAGAAGGTGATGAACAAACCACCATCCGCTGCATGGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGGCTGCAGGCTGCGTCTaGACATGTACAGCACGGTGC | + |
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Preference number: 2 (lower is better) Translates to: TSTMLWNAGDPKTGESRGAAGCV*TCTARC Trigger: GCACCGTGCTGTACATGTGCAGACGCAGCCTGCAGC...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGAACCTGGCTGCAGGCTaGGTCTGCACATGTACAGCA | + |
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Preference number: 2 (lower is better) Translates to: TSTMLWNAGDPKTGESRGNLAAG*VCTCTA Trigger: TGCTGTACATGTGCAGACGCAGCCTGCAGCCAGGTT...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCACAGAGTCGCACGTTTaGCACATGAGAGGAAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: STMLWNAGDPKTGESRGLTESHV*HMRGKL Trigger: CAGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGT...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCATGGAGACAGCTTCTaGCACTCAGGACCACAGAGT | + |
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Preference number: 2 (lower is better) Translates to: TSTMLWNAGDPKTGESRGHGDSF*HSGPQS Trigger: ACTCTGTGGTCCTGAGTGCCAGAAGCTGTCTCCATG...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCGCGAAACAGGTGATCTaGTATCTAGCATTCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: QAQCYGMQVTQRQASHGGAKQVI*YLAFRP Trigger: TGGCCTGAATGCTAGATATCAGATCACCTGTTTCGC...GCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | GACCATGCAGCGGATGGTGGTTTGTTCATCACCTTCTCTCCTGTTCCCACAGCGACAGAGTCGCACGTTTaGCACATGAGAGGAAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: DHAADGGLFITFSPVPTATESHV*HMRGKL Trigger: CAGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGT...CGCTGTGGGAACAGGAGAGAAGGTGATGAACAAACCACCATCCGCTGCATGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCTAGGTAACCGTGTGAGCACAAGTACAAGCACAATGCTATGGAATGCAGGTGCTGCAGGCTGCGTCTaGACATGTACAGCACGGTGC | + |
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Preference number: 2 (lower is better) Translates to: TLGNRVSTSTSTMLWNAGAAGCV*TCTARC Trigger: GCACCGTGCTGTACATGTGCAGACGCAGCCTGCAGC...ACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTCACACGGTTACCTAGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR CCA 90 bp | ACCCTAGGTAACCGTGTGAGCACAAGTACAAGCACAATGCTATGGAATGCAGGTCATGGAGACAGCTTCTaGCACTCAGGACCACAGAGT | + |
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Preference number: 2 (lower is better) Translates to: TLGNRVSTSTSTMLWNAGHGDSF*HSGPQS Trigger: ACTCTGTGGTCCTGAGTGCCAGAAGCTGTCTCCATG...ACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTCACACGGTTACCTAGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCAGTACTGACAGTTaGGTTGATTCTCTTTTTACA | + |
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Preference number: 2 (lower is better) Translates to: TSTMLWNAGDPKTGESRGLSTDS*VDSLFT Trigger: TGTAAAAAGAGAATCAACTCAACTGTCAGTACTGAG...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR GCA 72 bp | AAGAGTAGGCTGGGTATGCAGGCTGCCATTGGGCCTTaGACACACCAAGTACAAGCCAGGCCCTGCACCCCA | + |
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Preference number: 3 (lower is better) Translates to: KSRLGMQAAIGP*THQVQARPCTP Trigger: TGGGGTGCAGGGCCTGGCTTGTACTTGGTGTGTGCAAGGCCCAATGGCAGCCTGCATACCCAGCCTACTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR GCA 72 bp | CAGCTTCTGGCACTCAGGACCACAGAGTCGCACGTTTaGCACATGAGAGGAAAGCTGAGGGCGGAGAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: QLLALRTTESHV*HMRGKLRAEKR Trigger: CCTCTTCTCCGCCCTCAGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGTGGTCCTGAGTGCCAGAAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR CAA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCCACAGAGTCGCACGTTaGCCACATGAGAGGAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: STMLWNAGDPKTGESRGLHRVAR*PHERKA Trigger: AGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGTG...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR CAA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCGCAGCGGATGGTGGTTaGTTCATCACCTTCTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: STMLWNAGDPKTGESRGLAADGG*FITFSP Trigger: AGGAGAGAAGGTGATGAACAAACCACCATCCGCTGC...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCACAGAGTCGCACGTTaGCCACATGAGAGGAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: TSTMLWNAGDPKTGESRGHRVAR*PHERKA Trigger: AGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGTG...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR TCA 72 bp | GAGCACAAGTACAAGCACAATGCTATGGAATGCAGGTaGCCCAAAGACAGGCGAGTCACGGGGGCTCTACTG | + |
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Preference number: 3 (lower is better) Translates to: EHKYKHNAMECR*PKDRRVTGALL Trigger: CAGTAGAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR CCA 72 bp | GGTAACCGTGTGAGCACAAGTACAAGCACAATGCTATaGAATGCAGGTGACCCAAAGACAGGCGAGTCACGG | + |
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Preference number: 3 (lower is better) Translates to: GNRVSTSTSTML*NAGDPKTGESR Trigger: CCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTCACACGGTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR GCA 72 bp | ACAGGTGATCTGATATCTAGCATTCAGGCCATTAACTaGAAAACCTACACTAGGCATAGTCTCCGTTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: TGDLISSIQAIN*KTYTRHSLRSV Trigger: CACAGAACGGAGACTATGCCTAGTGTAGGTTTTGCAGTTAATGGCCTGAATGCTAGATATCAGATCACCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCAATGGCTCCCGGAGGCCAGGTGCCCCTACACCCAAATCCCTTCTCAGTGGAGGTCCTGCTTGTTaGCAAACACCAAGAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: QPNGSRRPGAPTPKSLLSGGPAC*QTPREQ Trigger: CTGTTCTCTTGGTGTTTGCCAACAAGCAGGACCTCC...ACTGAGAAGGGATTTGGGTGTAGGGGCACCTGGCCTCCGGGAGCCATTGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| 3UTR CAA 72 bp | CGGGGGCTCTACTGTGACCATGCAGCGGATGGTGGTTaGTTCATCACCTTCTCTCCTGTTCCCACAGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: RGLYCDHAADGG*FITFSPVPTAK Trigger: TTTCGCTGTGGGAACAGGAGAGAAGGTGATGAACAAACCACCATCCGCTGCATGGTCACAGTAGAGCCCCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| CDS-3UTR CCA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCGGAGGTCCTGCTTGTTaGCAAACACCAAGAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: STMLWNAGDPKTGESRGLGGPAC*QTPREQ Trigger: CTGTTCTCTTGGTGTTTGCCAACAAGCAGGACCTCC...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| CDS-3UTR TCA 90 bp | AGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCTCCAACAGTCTCCACATTaGAACCAATGGTGGGAATGG | + |
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Preference number: 4 (lower is better) Translates to: STMLWNAGDPKTGESRGLQQSPH*NQWWEW Trigger: CCATTCCCACCATTGGTTTCAATGTGGAGACTGTTG...GAGCCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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| CDS-3UTR TCA 90 bp | ACAAGCACAATGCTATGGAATGCAGGTGACCCAAAGACAGGCGAGTCACGGGGGCAACAGTCTCCACATTaGAACCAATGGTGGGAATGG | + |
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Preference number: 4 (lower is better) Translates to: TSTMLWNAGDPKTGESRGQQSPH*NQWWEW Trigger: CCATTCCCACCATTGGTTTCAATGTGGAGACTGTTG...CCCCCGTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061242.8 ENSMUST00000163300.8 |
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