Pregenerated sensors for AREG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029378Ensembl transcript IDs: ENSMUST00000031325.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATCTGGAACCATCCGAAAGCTCCACTTCCTTTTCTGAAAGAAGGACCAATGTCGGTGTGGCTTGGCAATaGTTCAACTTTTACCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: HLEPSESSTSFSERRTNVGVAWQ*FNFYPA Trigger: TGCAGGGTAAAAGTTGAATCATTGCCAAGCCACACC...GACATTGGTCCTTCTTTCAGAAAAGGAAGTGGAGCTTTCGGATGGTTCCAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| 3UTR CCA 72 bp | CCTTTTCTGAAAGAAGGACCAATGTCATTTCCGGTGTaGCTTGGCAATGATTCAACTTTTACCCTGCATTGT | + |
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Preference number: 3 (lower is better) Translates to: PFLKEGPMSFPV*LGNDSTFTLHC Trigger: ACAATGCAGGGTAAAAGTTGAATCATTGCCAAGCCACACCGGAAATGACATTGGTCCTTCTTTCAGAAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR GCA 90 bp | AGCTCCACTTCCTTTTCTGAAAGAAGGACCAATGTCATTTCCGGTGTGGCTTGGGCCGATGCCAATAGCTaGGAGGATGATGGCAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: SSTSFSERRTNVISGVAWADANS*EDDGRD Trigger: GTCTCTGCCATCATCCTCGCAGCTATTGGCATCGGC...CCAAGCCACACCGGAAATGACATTGGTCCTTCTTTCAGAAAAGGAAGTGGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR TCA 90 bp | AGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGAAAGCTCCTGAGCTGGGGTCATTaGGCTCCAAAGCAGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: SKTIIKSDNWASGTIRKLLSWGH*APKQLH Trigger: ATGCAGCTGCTTTGGAGCTCAATGACCCCAGCTCAG...GAGCTTTCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR TCA 90 bp | TACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGACGATTCGCCTTTCCCTaGGCTGGGGTCATTGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: YRSKTIIKSDNWASGTIRRFAFP*AGVIEL Trigger: GAGCTCAATGACCCCAGCTCAGGGAAAGGCGAATCG...TCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CCA 90 bp | GGCATCTGGAACCATCCGAAAGCTCCACTTCCTTTTCTGAAAGAAGGACCAATGCGCTGTGAGTCTTCATaGATTTTTCTCCACACCGTT | + |
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Preference number: 4 (lower is better) Translates to: GIWNHPKAPLPFLKEGPMRCESS*IFLHTV Trigger: AACGGTGTGGAGAAAAATCCATGAAGACTCACAGCG...CATTGGTCCTTCTTTCAGAAAAGGAAGTGGAGCTTTCGGATGGTTCCAGATGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CCA 90 bp | AAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGAAAGCTCCACAAGGCATTTCGCTTATaGTGGAAACCTCTCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KTIIKSDNWASGTIRKLHKAFRL*WKPLFP Trigger: TGGGAAGAGAGGTTTCCACCATAAGCGAAATGCCTT...GTGGAGCTTTCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR TCA 90 bp | TTTCTGAAAGAAGGACCAATGTCATTTCCGGTGTGGCTTGGCAATGATTCAACTATTATCATACTCCTCTaGGTAGTCGTAGTCCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: FLKEGPMSFPVWLGNDSTIIILL*VVVVPC Trigger: ACAGGGGACTACGACTACTCAGAGGAGTATGATAAT...AGTTGAATCATTGCCAAGCCACACCGGAAATGACATTGGTCCTTCTTTCAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR GCA 90 bp | CATCTGGAACCATCCGAAAGCTCCACTTCCTTTTCTGAAAGAAGGACCAATGTCTGCATTCGCCATGAATaGAAAAGTTCTGAAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: HLEPSESSTSFSERRTNVCIRHE*KSSETW Trigger: CCAAGTTTCAGAACTTTTGCATTCATGGCGAATGCA...GACATTGGTCCTTCTTTCAGAAAAGGAAGTGGAGCTTTCGGATGGTTCCAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CCA 90 bp | TACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGAGCATTTCGCTTATGGTaGAAACCTCTCTTCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: YRSKTIIKSDNWASGTIRAFRLW*KPLFPQ Trigger: CTGTGGGAAGAGAGGTTTCCACCATAAGCGAAATGC...TCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR GCA 90 bp | ATGTACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCAATCTTGATGACAATTaGATGTCACCACCTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: MYRSKTIIKSDNWASGTINLDDN*MSPPPG Trigger: ACCTGGAGGTGGTGACATGCAATTGTCATCAAGATT...GATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CCA 90 bp | ATGTACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCTACTACTGCAATCTTaGATAGGTCCTTGTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: MYRSKTIIKSDNWASGTILLLQS*IGPCHP Trigger: AGGATGACAAGGACCTATCCAAGATTGCAGTAGTAG...GATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR GCA 90 bp | ATGTACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCTCTGAAACTTGGCAGTaGATGGATTCTTTTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: MYRSKTIIKSDNWASGTISETWQ*MDSFSS Trigger: AGAAGAAAAAGAATCCATGCACTGCCAAGTTTCAGA...GATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CCA 90 bp | ATGTACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCATAGCCGGATATTTGTaGTTCATTATCATACTCCTC | + |
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Preference number: 4 (lower is better) Translates to: MYRSKTIIKSDNWASGTIIAGYL*FIIILL Trigger: GAGGAGTATGATAATGAACCACAAATATCCGGCTAT...GATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 90 bp | GTGGAAACCTCTCTTCCCACAGAAAGCTCAAGTCCACCGGCACTGTaGTCCCCAGAAAGCGATTCGCCTTTCCCTGAGCTGGGGTCATTG | + |
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Preference number: 5 (lower is better) Translates to: VETSLPTESSSPPAL*SPESDSPFPELGSL Trigger: CAATGACCCCAGCTCAGGGAAAGGCGAATCGCTTTCTGGGGACCACAGTGCCGGTGGACTTGAGCTTTCTGTGGGAAGAGAGGTTTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS TCA 90 bp | TGTGGTCCCCAGAAAGCGATTCGCCTTTCCCTGAGCTGGGGTCATTaGGCTCCAAAGCAGCTGCATAATGGCCTGAGCCTAAGACCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CGPQKAIRLSLSWGH*APKQLHNGLSLRPA Trigger: TGCTGGTCTTAGGCTCAGGCCATTATGCAGCTGCTTTGGAGCTCAATGACCCCAGCTCAGGGAAAGGCGAATCGCTTTCTGGGGACCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 90 bp | CGTAGTCCCCTGTGGAGAGTTCACTGCCAGAAGGCATTTCGCTTATaGTGGAAACCTCTCTTCCCACAGAAAGCTCAAGTCCACCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: RSPLWRVHCQKAFRL*WKPLFPQKAQVHRH Trigger: GTGCCGGTGGACTTGAGCTTTCTGTGGGAAGAGAGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 90 bp | AGTCCCCTGTGGAGAGTTCACTGCCAGAAGGCATTTCGCTTATGGTaGAAACCTCTCTTCCCACAGAAAGCTCAAGTCCACCGGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: SPLWRVHCQKAFRLW*KPLFPQKAQVHRHC Trigger: ACAGTGCCGGTGGACTTGAGCTTTCTGTGGGAAGAGAGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 90 bp | TATCATACTCCTCTGAGTAGTCGTAGTCCCCTGTGGAGAGTTCACTaGCAGAAGGCATTTCGCTTATGGTGGAAACCTCTCTTCCCACAG | + |
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Preference number: 5 (lower is better) Translates to: YHTPLSSRSPLWRVH*QKAFRLWWKPLFPQ Trigger: CTGTGGGAAGAGAGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGGAGTATGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CAA 90 bp | AAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGAAAGCTCCACCCTGAGCTGGGGTCATaGAGCTCCAAAGCAGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: KTIIKSDNWASGTIRKLHPELGS*SSKAAA Trigger: TGCAGCTGCTTTGGAGCTCAATGACCCCAGCTCAGG...GTGGAGCTTTCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 90 bp | TTTGTGGTTCATTATCATACTCCTCTGAGTAGTCGTAGTCCCCTGTaGAGAGTTCACTGCCAGAAGGCATTTCGCTTATGGTGGAAACCT | + |
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Preference number: 5 (lower is better) Translates to: FVVHYHTPLSSRSPL*RVHCQKAFRLWWKP Trigger: AGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGGAGTATGATAATGAACCACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 90 bp | TCTTCTGTTTCTCCTTCATATTCCCTGAAGTATCGTTTCCAAAGGTaGACTGTGATAACGATGCCGATGCCAATAGCTGCGAGGATGATG | + |
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Preference number: 5 (lower is better) Translates to: SSVSPSYSLKYRFQR*TVITMPMPIAARMM Trigger: CATCATCCTCGCAGCTATTGGCATCGGCATCGTTATCACAGTGCACCTTTGGAAACGATACTTCAGGGAATATGAAGGAGAAACAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 90 bp | TGGATTTTTCTCCACACCGTTCACCAAAGTAATCTTGATGACAATTaGATGTCACCACCTCCAGGTTCTCGATGTATCTGCATTCGCCAT | + |
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Preference number: 5 (lower is better) Translates to: WIFLHTVHQSNLDDN*MSPPPGSRCICIRH Trigger: ATGGCGAATGCAGATACATCGAGAACCTGGAGGTGGTGACATGCAATTGTCATCAAGATTACTTTGGTGAACGGTGTGGAGAAAAATCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS TCA 90 bp | ATCTATAATATAGCCGGATATTTGTGGTTCATTATCATACTCCTCTaGGTAGTCGTAGTCCCCTGTGGAGAGTTCACTGCCAGAAGGCAT | + |
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Preference number: 5 (lower is better) Translates to: IYNIAGYLWFIIILL*VVVVPCGEFTARRH Trigger: ATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGGAGTATGATAATGAACCACAAATATCCGGCTATATTATAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 90 bp | ATGTCACCACCTCCAGGTTCTCGATGTATCTGCATTCGCCATGAATaGAAAAGTTCTGAAACTTGGCAGTGCATGGATTCTTTTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: MSPPPGSRCICIRHE*KSSETWQCMDSFSS Trigger: AGAAGAAAAAGAATCCATGCACTGCCAAGTTTCAGAACTTTTGCATTCATGGCGAATGCAGATACATCGAGAACCTGGAGGTGGTGACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 90 bp | CTGCAATCTTGGATAGGTCCTTGTCATCCTCGCTGTGAGTCTTCATaGATTTTTCTCCACACCGTTCACCAAAGTAATCTTGATGACAAT | + |
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Preference number: 5 (lower is better) Translates to: LQSWIGPCHPRCESS*IFLHTVHQSNLDDN Trigger: ATTGTCATCAAGATTACTTTGGTGAACGGTGTGGAGAAAAATCCATGAAGACTCACAGCGAGGATGACAAGGACCTATCCAAGATTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CAA 90 bp | GAAAGCTCCACTTCCTTTTCTGAAAGAAGGACCAATGTCATTTCCGGTGTGGCTTTCACCAAAGTAATCTaGATGACAATTGCATGTCAC | + |
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Preference number: 5 (lower is better) Translates to: ESSTSFSERRTNVISGVAFTKVI*MTIACH Trigger: GTGACATGCAATTGTCATCAAGATTACTTTGGTGAA...AGCCACACCGGAAATGACATTGGTCCTTCTTTCAGAAAAGGAAGTGGAGCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CAA 90 bp | AGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCCGAAAGCTCCCCTTTTTCTTCCTTTaGGGTTTTTCTGTAGACTTT | + |
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Preference number: 5 (lower is better) Translates to: SKTIIKSDNWASGTIRKLPFFFL*GFSVDF Trigger: AAAGTCTACAGAAAAACCCAAAAGGAAGAAAAAGGG...GAGCTTTCGGATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS-3UTR CAA 90 bp | ATGTACAGAAGTAAGACTATCATAAAAAGTGACAACTGGGCATCTGGAACCATCTCTGTCTTGTTTTTCTaGGGCTTAATCACCTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: MYRSKTIIKSDNWASGTISVLFF*GLITCS Trigger: TGAACAGGTGATTAAGCCCAAGAAAAACAAGACAGA...GATGGTTCCAGATGCCCAGTTGTCACTTTTTATGATAGTCTTACTTCTGTACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS TCA 72 bp | GGCACTGTGGTCCCCAGAAAGCGATTCGCCTTTCCCTaGGCTGGGGTCATTGAGCTCCAAAGCAGCTGCATA | + |
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Preference number: 6 (lower is better) Translates to: GTVVPRKRFAFP*AGVIELQSSCI Trigger: TATGCAGCTGCTTTGGAGCTCAATGACCCCAGCTCAGGGAAAGGCGAATCGCTTTCTGGGGACCACAGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 72 bp | TCTCTTCCCACAGAAAGCTCAAGTCCACCGGCACTGTaGTCCCCAGAAAGCGATTCGCCTTTCCCTGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLPTESSSPPAL*SPESDSPFPEL Trigger: CAGCTCAGGGAAAGGCGAATCGCTTTCTGGGGACCACAGTGCCGGTGGACTTGAGCTTTCTGTGGGAAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS TCA 72 bp | CAGAAAGCGATTCGCCTTTCCCTGAGCTGGGGTCATTaGGCTCCAAAGCAGCTGCATAATGGCCTGAGCCTA | + |
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Preference number: 6 (lower is better) Translates to: QKAIRLSLSWGH*APKQLHNGLSL Trigger: TAGGCTCAGGCCATTATGCAGCTGCTTTGGAGCTCAATGACCCCAGCTCAGGGAAAGGCGAATCGCTTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | CCTCTGAGTAGTCGTAGTCCCCTGTGGAGAGTTCACTaGCAGAAGGCATTTCGCTTATGGTGGAAACCTCTC | + |
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Preference number: 6 (lower is better) Translates to: PLSSRSPLWRVH*QKAFRLWWKPL Trigger: GAGAGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | AAGGTGCACTGTGATAACGATGCCGATGCCAATAGCTaGGAGGATGATGGCAGAGACAAAGATAGTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: KVHCDNDADANS*EDDGRDKDSDS Trigger: GCTGTCACTATCTTTGTCTCTGCCATCATCCTCGCAGCTATTGGCATCGGCATCGTTATCACAGTGCACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 72 bp | TGGAGAGTTCACTGCCAGAAGGCATTTCGCTTATGGTaGAAACCTCTCTTCCCACAGAAAGCTCAAGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: WRVHCQKAFRLW*KPLFPQKAQVH Trigger: GTGGACTTGAGCTTTCTGTGGGAAGAGAGGTTTCCACCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CCA 72 bp | CATTATCATACTCCTCTGAGTAGTCGTAGTCCCCTGTaGAGAGTTCACTGCCAGAAGGCATTTCGCTTATGG | + |
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Preference number: 6 (lower is better) Translates to: HYHTPLSSRSPL*RVHCQKAFRLW Trigger: CCATAAGCGAAATGCCTTCTGGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGGAGTATGATAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS TCA 72 bp | ATAGCCGGATATTTGTGGTTCATTATCATACTCCTCTaGGTAGTCGTAGTCCCCTGTGGAGAGTTCACTGCC | + |
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Preference number: 6 (lower is better) Translates to: IAGYLWFIIILL*VVVVPCGEFTA Trigger: GGCAGTGAACTCTCCACAGGGGACTACGACTACTCAGAGGAGTATGATAATGAACCACAAATATCCGGCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | CTCCACACCGTTCACCAAAGTAATCTTGATGACAATTaGATGTCACCACCTCCAGGTTCTCGATGTATCTGC | + |
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Preference number: 6 (lower is better) Translates to: LHTVHQSNLDDN*MSPPPGSRCIC Trigger: GCAGATACATCGAGAACCTGGAGGTGGTGACATGCAATTGTCATCAAGATTACTTTGGTGAACGGTGTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | TCTCCTTCATATTCCCTGAAGTATCGTTTCCAAAGGTaGACTGTGATAACGATGCCGATGCCAATAGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: SPSYSLKYRFQR*TVITMPMPIAA Trigger: CGCAGCTATTGGCATCGGCATCGTTATCACAGTGCACCTTTGGAAACGATACTTCAGGGAATATGAAGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | CCTCCAGGTTCTCGATGTATCTGCATTCGCCATGAATaGAAAAGTTCTGAAACTTGGCAGTGCATGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: PPGSRCICIRHE*KSSETWQCMDS Trigger: AGAATCCATGCACTGCCAAGTTTCAGAACTTTTGCATTCATGGCGAATGCAGATACATCGAGAACCTGGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS GCA 72 bp | AATTGCATGTCACCACCTCCAGGTTCTCGATGTATCTaGATTCGCCATGAATGCAAAAGTTCTGAAACTTGG | + |
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Preference number: 6 (lower is better) Translates to: NCMSPPPGSRCI*IRHECKSSETW Trigger: CCAAGTTTCAGAACTTTTGCATTCATGGCGAATGCAGATACATCGAGAACCTGGAGGTGGTGACATGCAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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| CDS CAA 90 bp | GTGAGTCTTCATGGATTTTTCTCCACACCGTTCACCAAAGTAATCTaGATGACAATTGCATGTCACCACCTCCAGGTTCTCGATGTATCT | + |
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Preference number: 6 (lower is better) Translates to: VSLHGFFSTPFTKVI*MTIACHHLQVLDVS Trigger: AGATACATCGAGAACCTGGAGGTGGTGACATGCAATTGTCATCAAGATTACTTTGGTGAACGGTGTGGAGAAAAATCCATGAAGACTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031325.6 |
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