RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022602

Ensembl transcript IDs: ENSMUST00000023268.14, ENSMUST00000110009.4

Found 309 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCCTAGGAGCCAAGGCCTGGGGTCTCCTGGGACTGGGCTTGACCTaGCAGGCAGGGCACAGCAGGAAAGATCAGGCTGGGCAGGGGCCC +
Preference number: 1 (lower is better)
Translates to: SLGAKAWGLLGLGLT*QAGHSRKDQAGQGP
Trigger: GGGCCCCTGCCCAGCCTGATCTTTCCTGCTGTGCCCTGCCTGCCAGGTCAAGCCCAGTCCCAGGAGACCCCAGGCCTTGGCTCCTAGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp ATCAGGCTGGGCAGGGGCCCAAGCCTTAAGGCTCCTGCAAGGGTCTaGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGGGCTCTGTGCCA +
Preference number: 1 (lower is better)
Translates to: IRLGRGPSLKAPARV*SGSQRPCSELGSVP
Trigger: TGGCACAGAGCCCAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAGGCTTGGGCCCCTGCCCAGCCTGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp CAGGCAGGTCAGGGAGGTTCATGGAACAGCCTAGGAGCCAAGGCCTaGGGTCTCCTGGGACTGGGCTTGACCTGGCAGGCAGGGCACAGC +
Preference number: 1 (lower is better)
Translates to: QAGQGGSWNSLGAKA*GLLGLGLTWQAGHS
Trigger: GCTGTGCCCTGCCTGCCAGGTCAAGCCCAGTCCCAGGAGACCCCAGGCCTTGGCTCCTAGGCTGTTCCATGAACCTCCCTGACCTGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 90 bp AGCTGCATTTGTGGCTTCAGCTCACCCCTGGGAGGGGAGCTATGCTaGCCAAGACTGGCCGGTTGCCCTGGGCGGCAGCTAGGGTACCAG +
Preference number: 1 (lower is better)
Translates to: SCICGFSSPLGGELC*PRLAGCPGRQLGYQ
Trigger: CTGGTACCCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGGGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 90 bp GTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATaGTGGCTTGTCTTCACCTTCAGCTCTTGGGCTGAGCTGGGGTGC +
Preference number: 1 (lower is better)
Translates to: VSGQRGGHHGRPVVS*WLVFTFSSWAELGC
Trigger: GCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 90 bp TTCAGCTGCATTTGTGGCTTCAGCTCACCCCTGGGAGGGGAGCTATaGTGCCCAAGACTGGCCGGTTGCCCTGGGCGGCAGCTAGGGTAC +
Preference number: 1 (lower is better)
Translates to: FSCICGFSSPLGGEL*CPRLAGCPGRQLGY
Trigger: GTACCCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGGGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp GGCAGACCCGTGGTTTCATGCTGGCTTGTCTTCACCTTCAGCTCTTaGGCTGAGCTGGGGTGCTGCCCCCTGCCAGGCACCTCCTCTCTG +
Preference number: 1 (lower is better)
Translates to: GRPVVSCWLVFTFSS*AELGCCPLPGTSSL
Trigger: CAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCACGGGTCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp ACCCGTGGTTTCATGCTGGCTTGTCTTCACCTTCAGCTCTTGGGCTaGGCTGGGGTGCTGCCCCCTGCCAGGCACCTCCTCTCTGTAATC +
Preference number: 1 (lower is better)
Translates to: TRGFMLACLHLQLLG*AGVLPPARHLLSVI
Trigger: GATTACAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCACGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp AGCCCTGGACACTGGAGCAGAATGAGGAAGCCAGATCGTGTTCTGTaGTGGTCTGAGAGTGTAGAGGGTGAGGCCAATGGGGCTGGGGGC +
Preference number: 1 (lower is better)
Translates to: SPGHWSRMRKPDRVL*WSESVEGEANGAGG
Trigger: GCCCCCAGCCCCATTGGCCTCACCCTCTACACTCTCAGACCATCACAGAACACGATCTGGCTTCCTCATTCTGCTCCAGTGTCCAGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp CCATGGCTGAGTCACGGAGCTGAGCTCTGCTCTTCTTCACTGGTATaGATCACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGC +
Preference number: 1 (lower is better)
Translates to: PWLSHGAELCSSSLV*ITGGQEVPGCQVCC
Trigger: GCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGTGATTCATACCAGTGAAGAAGAGCAGAGCTCAGCTCCGTGACTCAGCCATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
3UTR CCA 90 bp GACCAGGGCAGACAGATGAGGGGTAGGCGGCAGGTGGGAGCCCTATaGGAAAGGGGCTTCTTGATGTTCAGTCCATGTAGCATGGTTGTG +
Preference number: 1 (lower is better)
Translates to: DQGRQMRGRRQVGAL*ERGFLMFSPCSMVV
Trigger: CACAACCATGCTACATGGACTGAACATCAAGAAGCCCCTTTCCCATAGGGCTCCCACCTGCCGCCTACCCCTCATCTGTCTGCCCTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp GCTGGATCTGCTGTGTCTGCAGGAGTGGGCTGCATCCCCGGAAGTTaGGGTTCCCTCAGCATCTCTGCTTTAGCATCTGCCCTAGGATGT +
Preference number: 1 (lower is better)
Translates to: AGSAVSAGVGCIPGS*GSLSISALASALGC
Trigger: ACATCCTAGGGCAGATGCTAAAGCAGAGATGCTGAGGGAACCTCAACTTCCGGGGATGCAGCCCACTCCTGCAGACACAGCAGATCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp TGGTTTCATGCTGGCTTGTCTTCACCTTCAGCTCTTGGGCTGAGCTaGGGTGCTGCCCCCTGCCAGGCACCTCCTCTCTGTAATCTTGTT +
Preference number: 1 (lower is better)
Translates to: WFHAGLSSPSALGLS*GAAPCQAPPLCNLV
Trigger: AACAAGATTACAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp GGGGGCTGGCAGGGGCACAGGGTGGAGGATCTGTCAGAACATCAGTaGAATTGGTCTCAGAACACCAATAGACCAGGCAGATGGAGGAAC +
Preference number: 1 (lower is better)
Translates to: GGWQGHRVEDLSEHQ*NWSQNTNRPGRWRN
Trigger: GTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTGCCCCTGCCAGCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 90 bp TCTGCTCTTCTTCACTGGTATGAATCACTGCTGGGGGCCAGGAGGTaGCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTGGCTTCA +
Preference number: 1 (lower is better)
Translates to: SALLHWYESLLGARR*QDVRSAASAAFVAS
Trigger: TGAAGCCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGCAGTGATTCATACCAGTGAAGAAGAGCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
3UTR CCA 90 bp AACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCTaGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTC +
Preference number: 1 (lower is better)
Translates to: NPCRQLQEKRGWCWC*WCGDALSRHGSKDF
Trigger: GAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp TCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTaGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAA +
Preference number: 1 (lower is better)
Translates to: SWNPCRQLQEKRGWC*CWWCGDALSRHGSK
Trigger: TTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp AAAGTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATaGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGC +
Preference number: 1 (lower is better)
Translates to: KVSWNPCRQLQEKRG*CWCWWCGDALSRHG
Trigger: GCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp TGGCAGGGGCACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTaGTCTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAAC +
Preference number: 1 (lower is better)
Translates to: WQGHRVEDLSEHQWN*SQNTNRPGRWRNRN
Trigger: GTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTGCCCCTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp CCCCCTGCCAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTaGAAGTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAG +
Preference number: 1 (lower is better)
Translates to: PPARHLLSVILFSLP*KCLGTHVGSFRRRE
Trigger: CTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTGGCAGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 90 bp GCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTaGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGG +
Preference number: 1 (lower is better)
Translates to: APPLCNLVFSALKVS*NPCRQLQEKRGWCW
Trigger: CCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 90 bp GGTTTTGGTGCCTACTTTTTGTTGCCTTTCAGACACTTGGTTTCTTaGTTACCCAAAGAGCCCTGGACACTGGAGCAGAATGAGGAAGCC +
Preference number: 1 (lower is better)
Translates to: GFGAYFLLPFRHLVS*LPKEPWTLEQNEEA
Trigger: GGCTTCCTCATTCTGCTCCAGTGTCCAGGGCTCTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCAACAAAAAGTAGGCACCAAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 90 bp TGGAACAGCCTAGGAGCCAAGGCCTGGGGTCTCCTGGGACTGGGCTaGACCTGGCAGGCAGGGCACAGCAGGAAAGATCAGGCTGGGCAG +
Preference number: 2 (lower is better)
Translates to: WNSLGAKAWGLLGLG*TWQAGHSRKDQAGQ
Trigger: CTGCCCAGCCTGATCTTTCCTGCTGTGCCCTGCCTGCCAGGTCAAGCCCAGTCCCAGGAGACCCCAGGCCTTGGCTCCTAGGCTGTTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTTCCGCCTGCCATGGCTaGGTCACGGAGCTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: RPAGRASWQTRGFMLACLSACHG*VTELSS
Trigger: AGAGCTCAGCTCCGTGACTCAGCCATGGCAGGCGGA...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp AGCCTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGCTTCAGCTCTTGGGCTaGGCTGGGGTGCTGCCCCCT +
Preference number: 2 (lower is better)
Translates to: SLKAPARVWSGSQRPCSELQLLG*AGVLPP
Trigger: AGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAG...CTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTTGGGGTGCTGCCCCCTaGCAGGCACCTCCTCTCTGT +
Preference number: 2 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPAWGAAP*QAPPLC
Trigger: ACAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCA...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGGCAAAAGCCACAGGCTaGGTGTGGCAGGCGGGCTGG +
Preference number: 2 (lower is better)
Translates to: LKAPARVWSGSQRPCSELAKATG*VWQAGW
Trigger: CCAGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGC...CAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTGCTTCAGCTCACCCCTaGGAGGGGAGCTATGCTGCC +
Preference number: 2 (lower is better)
Translates to: RPAGRASWQTRGFMLACLASAHP*EGSYAA
Trigger: GGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGC...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTGGTATGAATCACTGCTaGGGGCCAGGAGGTGCCAGG +
Preference number: 2 (lower is better)
Translates to: ERPAGRASWQTRGFMLACGMNHC*GPGGAR
Trigger: CCTGGCACCTCCTGGCCCCCAGCAGTGATTCATACC...ACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
3UTR-3UTR TCA 90 bp CAGGACCAGGGCAGACAGATGAGGGGTAGGCGGCAGGTGGGAGCCCTATGGGAAGGCCAGGTCAGTGGGTaGGTAGATGTCTGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: QDQGRQMRGRRQVGALWEGQVSG*VDVWLD
Trigger: GTCCAGCCAGACATCTACTCACCCACTGACCTGGCC...TTCCCATAGGGCTCCCACCTGCCGCCTACCCCTCATCTGTCTGCCCTGGTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTGACAGGGCATCCCTTTaGGAGTCAGCCCCAGCTCAA +
Preference number: 2 (lower is better)
Translates to: ERPAGRASWQTRGFMLACDRASL*ESAPAQ
Trigger: TTGAGCTGGGGCTGACTCCCAAAGGGATGCCCTGTC...ACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp AATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGCTTCAGCTGCATTTGTaGCTTCAGCTCACCCCTGGG +
Preference number: 2 (lower is better)
Translates to: NGRQLVSGQRGGHHGRPVLQLHL*LQLTPG
Trigger: CCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAAG...CACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTTGCCTCGGCTGGGTGTaGGGACTCAGCCCCTCGGGG +
Preference number: 2 (lower is better)
Translates to: AGAGGVVMPFPDMAAKTSCLGWV*GLSPSG
Trigger: CCCCGAGGGGCTGAGTCCTCACACCCAGCCGAGGCA...AGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp AGCCTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGGTTGTGTGGCAGTTGTaGGTCAGGCCAGGTCAGTGG +
Preference number: 2 (lower is better)
Translates to: SLKAPARVWSGSQRPCSEVVWQL*VRPGQW
Trigger: CCACTGACCTGGCCTGACTCACAACTGCCACACAAC...CTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGAGGGCAAAAGCCACAGGCTaGGTGTGGCAGGCGGGCTGG +
Preference number: 2 (lower is better)
Translates to: ADTSSYQHKVIGAGAWLRAKATG*VWQAGW
Trigger: CCAGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGC...CCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTACTGGTATGAATCACTaGGGGCCAGGAGGTGCCAGG +
Preference number: 2 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPATGMNH*GPGGAR
Trigger: CCTGGCACCTCCTGGCCCCCAGTGATTCATACCAGT...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGCCTCGGCTGGGTGTaGGGACTCAGCCCCTCGGGG +
Preference number: 2 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNCLGWV*GLSPSG
Trigger: CCCCGAGGGGCTGAGTCCTCACACCCAGCCGAGGCA...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGACAGGGCATCCCTTTaGGAGTCAGCCCCAGCTCAA +
Preference number: 2 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPDRASL*ESAPAQ
Trigger: TTGAGCTGGGGCTGACTCCCAAAGGGATGCCCTGTC...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCTGGTGTCATTCTCCTaGCTCTGTAGGCTCCAGCCG +
Preference number: 2 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQLVSFS*LCRLQP
Trigger: CGGCTGGAGCCTACAGAGCCAGGAGAATGACACCAG...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTTTCACCTTCAGCTCTTaGGCTGAGCTGGGGTGCTGC +
Preference number: 2 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPFTFSS*AELGCC
Trigger: GCAGCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAA...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 90 bp TGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTaGGCTGAGGTTTCAGCTGGGCAATCACCAGGCAGGTCAGGGAGG +
Preference number: 2 (lower is better)
Translates to: CRHKQLPAQGNWSWG*AEVSAGQSPGRSGR
Trigger: CCTCCCTGACCTGCCTGGTGATTGCCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGGGCCAGGTCAGTGGGTaGGTAGATGTCTGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQGQVSG*VDVWLD
Trigger: GTCCAGCCAGACATCTACTCACCCACTGACCTGGCC...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp TGGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACACTGGTATGAATCACTaGTGGGGGCCAGGAGGTGCC +
Preference number: 2 (lower is better)
Translates to: WCWCWWCGDALSRHGSKDTGMNH*WGPGGA
Trigger: GGCACCTCCTGGCCCCCAGCAGTGATTCATACCAGT...GTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
3UTR-3UTR GCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGGGTGCTGCCCCCTaGCAGGCACCTCCTCTCTGT +
Preference number: 2 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNWGAAP*QAPPLC
Trigger: ACAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCA...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp CTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGAGACCCGTGGTTTCATaGTGGCTTGTCTTCACCTTC +
Preference number: 2 (lower is better)
Translates to: LKAPARVWSGSQRPCSELRPVVS*WLVFTF
Trigger: GAAGGTGAAGACAAGCCAGCATGAAACCACGGGTCT...CAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGACCCTCCGCCTGCCATaGCTGAGTCACGGAGCTGAG +
Preference number: 2 (lower is better)
Translates to: LRTPIDQADGGTATRPTQTLRLP*LSHGAE
Trigger: CTCAGCTCCGTGACTCAGCCATGGCAGGCGGAGGGT...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGCACCCTCCGCCTGCCATaGCTGAGTCACGGAGCTGAG +
Preference number: 2 (lower is better)
Translates to: QRLLSSLETWCHSPGSVGTLRLP*LSHGAE
Trigger: CTCAGCTCCGTGACTCAGCCATGGCAGGCGGAGGGT...GCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 90 bp AGCTGGATCTGCTGTGTCTGCAGGAGTGGGCTGCATCCCCGGAAGTaGAGGTTCCCTCAGCATCTCTGCTTTAGCATCTGCCCTAGGATG +
Preference number: 2 (lower is better)
Translates to: SWICCVCRSGLHPRK*RFPQHLCFSICPRM
Trigger: CATCCTAGGGCAGATGCTAAAGCAGAGATGCTGAGGGAACCTCAACTTCCGGGGATGCAGCCCACTCCTGCAGACACAGCAGATCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp ACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGGTTGTGTGGCAGTTGTaGGTCAGGCCAGGTCAGTGG +
Preference number: 2 (lower is better)
Translates to: TADTSSYQHKVIGAGAWLVVWQL*VRPGQW
Trigger: CCACTGACCTGGCCTGACTCACAACTGCCACACAAC...CAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GCTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTTTACCCAAAGAGCCCTaGACACTGGAGCAGAATGAG +
Preference number: 2 (lower is better)
Translates to: AGGQEVPGCQVCCFSCICLPKEP*TLEQNE
Trigger: CTCATTCTGCTCCAGTGTCCAGGGCTCTTTGGGTAA...ACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
3UTR-3UTR CCA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTTGCCCTTTCCAGACATaGCAGCAAAGACTTCTCAGC +
Preference number: 2 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPCPFQT*QQRLLS
Trigger: GCTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCA...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCGCTCTTGGGCTGAGCTaGGGTGCTGCCCCCTGCCAG +
Preference number: 2 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGALGLS*GAAPCQ
Trigger: CTGGCAGGGGGCAGCACCCCAGCTCAGCCCAAGAGC...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGTGCATCCCCGGAAGTTaGGGTTCCCTCAGCATCTCT +
Preference number: 2 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQCIPGS*GSLSIS
Trigger: AGAGATGCTGAGGGAACCTCAACTTCCGGGGATGCA...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCCTTCAGCTCTTGGGCTaGGCTGGGGTGCTGCCCCCT +
Preference number: 2 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGLQLLG*AGVLPP
Trigger: AGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAG...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCTCCTGGGACTGGGCTTaGCCTGGCAGGCAGGGCACA +
Preference number: 2 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGSWDWA*PGRQGT
Trigger: TGTGCCCTGCCTGCCAGGTCAAGCCCAGTCCCAGGA...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp GAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTGTGCCTACTTTTTGTTaGCTTTCAGACACTTGGTTT +
Preference number: 2 (lower is better)
Translates to: ERPAGRASWQTRGFMLACVPTFC*LSDTWF
Trigger: AAACCAAGTGTCTGAAAGGCAACAAAAAGTAGGCAC...ACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTTGGATCTGCTGTGTCTaGAGGAGTGGGCTGCATCCC +
Preference number: 2 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGWICCV*RSGLHP
Trigger: GGGATGCAGCCCACTCCTGCAGACACAGCAGATCCA...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGCTGGTGTCATTCTCCTaGCTCTGTAGGCTCCAGCCG +
Preference number: 2 (lower is better)
Translates to: LRTPIDQADGGTATRPTQLVSFS*LCRLQP
Trigger: CGGCTGGAGCCTACAGAGCCAGGAGAATGACACCAG...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGATTGGAGCTGGGGCTTaGCTGAGGTTTCAGCTGGGC +
Preference number: 2 (lower is better)
Translates to: LRTPIDQADGGTATRPTQIGAGA*LRFQLG
Trigger: GCCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAAT...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp GTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCACTTCTCAGCAGCCTTaGGACCTGGTGTCATTCTCC +
Preference number: 2 (lower is better)
Translates to: VSWNPCRQLQEKRGWCWCTSQQP*DLVSFS
Trigger: GGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGT...GCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp AGCCTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGTTGTTTTCTCTGCCTTaGAAGTGTCTTGGAACCCAT +
Preference number: 2 (lower is better)
Translates to: SLKAPARVWSGSQRPCSELFSLP*KCLGTH
Trigger: ATGGGTTCCAAGACACTTTCAAGGCAGAGAAAACAA...CTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTGTGCCTACTTTTTGTTaGCTTTCAGACACTTGGTTT +
Preference number: 2 (lower is better)
Translates to: RPAGRASWQTRGFMLACLVPTFC*LSDTWF
Trigger: AAACCAAGTGTCTGAAAGGCAACAAAAAGTAGGCAC...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGAGGTTACCCAAAGAGCCCTaGACACTGGAGCAGAATGAG +
Preference number: 2 (lower is better)
Translates to: ADTSSYQHKVIGAGAWLRLPKEP*TLEQNE
Trigger: CTCATTCTGCTCCAGTGTCCAGGGCTCTTTGGGTAA...CCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATGGATGGTGCTGGTGCTaGTGGTGTGGTGATGCCCTT +
Preference number: 2 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNGWCWC*WCGDAL
Trigger: AAGGGCATCACCACACCACCAGCACCAGCACCATCC...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GGTCTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGGAGAAGAGAGGATaGTGCTGGTGCTGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: GLRTPIDQADGGTATRPTQEKRG*CWCWWC
Trigger: ACACCACCAGCACCAGCACCATCCTCTCTTCTCCTG...AGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGGGGTCATGGCTTTTGTaGAAAAATAAACTTGTGGGG +
Preference number: 2 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQGSWLL*KNKLVG
Trigger: CCCCACAAGTTTATTTTTGCACAAAAGCCATGACCC...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTGGAACGCTTCAGCTCACCCCTaGGAGGGGAGCTATGCTGCC +
Preference number: 2 (lower is better)
Translates to: QAPPLCNLVFSALKVSWNASAHP*EGSYAA
Trigger: GGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGC...GTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp CCTACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAGGCAGGGGCACAGGGTaGAGGATCTGTCAGAACATC +
Preference number: 2 (lower is better)
Translates to: PTYTPYASQMSMGHGFCAGRGTG*RICQNI
Trigger: GATGTTCTGACAGATCCTCCACCCTGTGCCCCTGCC...TGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp AACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGTGCATCCCCGGAAGTTaGGGTTCCCTCAGCATCTCT +
Preference number: 2 (lower is better)
Translates to: NKAYSDCRHKQLPAQGNWCIPGS*GSLSIS
Trigger: AGAGATGCTGAGGGAACCTCAACTTCCGGGGATGCA...CCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTTGCCTTTCAGACACTTaGTTTCTTGATTACCCAAAG +
Preference number: 2 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPCLSDT*FLDYPK
Trigger: CTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCA...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp AACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGCTTCAGCTGCATTTGTaGCTTCAGCTCACCCCTGGG +
Preference number: 2 (lower is better)
Translates to: NKAYSDCRHKQLPAQGNWLQLHL*LQLTPG
Trigger: CCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAAG...CCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 90 bp GAGGTAAGATGGTATGGGCAGACAGCCTGGCTGGATATTCAAGGCTaGGTGAAAATAGGGGATAGCCACACTCTCTTGAGATCTCCAGGG +
Preference number: 2 (lower is better)
Translates to: EVRWYGQTAWLDIQG*VKIGDSHTLLRSPG
Trigger: CCCTGGAGATCTCAAGAGAGTGTGGCTATCCCCTATTTTCACCAAGCCTTGAATATCCAGCCAGGCTGTCTGCCCATACCATCTTACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp AACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGACTTCTCAGCAGCCTTaGGACCTGGTGTCATTCTCC +
Preference number: 2 (lower is better)
Translates to: NKAYSDCRHKQLPAQGNWTSQQP*DLVSFS
Trigger: GGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGT...CCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp CAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTGGAACTGGATCTGCTGTGTCTaGAGGAGTGGGCTGCATCCC +
Preference number: 2 (lower is better)
Translates to: QAPPLCNLVFSALKVSWNWICCV*RSGLHP
Trigger: GGGATGCAGCCCACTCCTGCAGACACAGCAGATCCA...GTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATCCAGGATGTCAGGTCTaGTGCTTCAGCTGCATTTGT +
Preference number: 2 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNPGCQV*CFSCIC
Trigger: ACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGG...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCGAGAAGAGAGGATGGTaGTGGTGCTGGTGGTGTGGT +
Preference number: 2 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGEKRGW*WCWWCG
Trigger: ACCACACCACCAGCACCAGCACCATCCTCTCTTCTC...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp ACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAAAAGGATGGTGCTGGTGCTaGTGGTGTGGTGATGCCCTT +
Preference number: 2 (lower is better)
Translates to: TYTPYASQMSMGHGFCAKGWCWC*WCGDAL
Trigger: AAGGGCATCACCACACCACCAGCACCAGCACCATCC...TTTTGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp CACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATGGGAAAGGGGCTTCTTaGTGTTCAGTCCATGTAGCA +
Preference number: 2 (lower is better)
Translates to: HRVEDLSEHQWNWSQNTNGKGAS*CSVHVA
Trigger: TGCTACATGGACTGAACATCAAGAAGCCCCTTTCCC...ATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR GCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCAAGGCCTACTCAGACTaGAGACACAAGCAGCTACCA +
Preference number: 2 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGKAYSD*RHKQLP
Trigger: TGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTT...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp ACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAAAAAAGAGCCCTGGACACTaGAGCAGAATGAGGAAGCCA +
Preference number: 2 (lower is better)
Translates to: TYTPYASQMSMGHGFCAKKSPGH*SRMRKP
Trigger: TGGCTTCCTCATTCTGCTCCAGTGTCCAGGGCTCTT...TTTTGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGTGCCTTTCAGACACTTaGTTTCTTGATTACCCAAAG +
Preference number: 2 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQCLSDT*FLDYPK
Trigger: CTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCA...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR TCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTTGTTTTCTCTGCCTTaGAAGTGTCTTGGAACCCAT +
Preference number: 2 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNLFSLP*KCLGTH
Trigger: ATGGGTTCCAAGACACTTTCAAGGCAGAGAAAACAA...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp GGCAGGGGCCCAAGCCTTAAGGCTCCTGCAAGGGTCTaGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGGGC +
Preference number: 3 (lower is better)
Translates to: GRGPSLKAPARV*SGSQRPCSELG
Trigger: GCCCAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAGGCTTGGGCCCCTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp CTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGCCCAAGACTGGCCGGTaGCCCTGGGCGGCAGCTAGG +
Preference number: 3 (lower is better)
Translates to: LKAPARVWSGSQRPCSELPKTGR*PWAAAR
Trigger: CCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGGG...CAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp TGTGGCTTCAGCTCACCCCTGGGAGGGGAGCTATGCTaGCCAAGACTGGCCGGTTGCCCTGGGCGGCAGCTA +
Preference number: 3 (lower is better)
Translates to: CGFSSPLGGELC*PRLAGCPGRQL
Trigger: TAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGGGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp ATTTGTGGCTTCAGCTCACCCCTGGGAGGGGAGCTATaGTGCCCAAGACTGGCCGGTTGCCCTGGGCGGCAG +
Preference number: 3 (lower is better)
Translates to: ICGFSSPLGGEL*CPRLAGCPGRQ
Trigger: CTGCCGCCCAGGGCAACCGGCCAGTCTTGGGCAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACAAAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp ATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCCACTCCTGGGACTGGGCTaGACCTGGCAGGCAGGGCAC +
Preference number: 3 (lower is better)
Translates to: ISRVSLVPRAYLHTLCQPLLGLG*TWQAGH
Trigger: GTGCCCTGCCTGCCAGGTCAAGCCCAGTCCCAGGAG...TGGCTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp CGGGGAGCCAAAGGCCATGCAGCGAGCTGGGCTCTGTaGCAAGAGGACCAAGGGTACAGACCCTGCTCAAGC +
Preference number: 3 (lower is better)
Translates to: RGAKGHAASWAL*QEDQGYRPCSS
Trigger: GCTTGAGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTTTGGCTCCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp GCTGGCTTGTCTTCACCTTCAGCTCTTGGGCTGAGCTaGGGTGCTGCCCCCTGCCAGGCACCTCCTCTCTGT +
Preference number: 3 (lower is better)
Translates to: AGLSSPSALGLS*GAAPCQAPPLC
Trigger: ACAGAGAGGAGGTGCCTGGCAGGGGGCAGCACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp CAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATaGCAGACCCGTGGTTTCATGCTGGCTTGTCTTCAC +
Preference number: 3 (lower is better)
Translates to: QAASERPAGRAS*QTRGFMLACLH
Trigger: GTGAAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp CAGGGAGGTTCATGGAACAGCCTAGGAGCCAAGGCCTaGGGTCTCCTGGGACTGGGCTTGACCTGGCAGGCA +
Preference number: 3 (lower is better)
Translates to: QGGSWNSLGAKA*GLLGLGLTWQA
Trigger: TGCCTGCCAGGTCAAGCCCAGTCCCAGGAGACCCCAGGCCTTGGCTCCTAGGCTGTTCCATGAACCTCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGAGGCCCAAGACTGGCCGGTaGCCCTGGGCGGCAGCTAGG +
Preference number: 3 (lower is better)
Translates to: ADTSSYQHKVIGAGAWLRPKTGR*PWAAAR
Trigger: CCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGGG...CCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp CAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTaGATTTGTGGCTTCAGCTCACCCCTGGGAGGGGAG +
Preference number: 3 (lower is better)
Translates to: QEVPGCQVCCFS*ICGFSSPLGGE
Trigger: CTCCCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp CAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATaGTGGCTTGTCTTCACCTTCAGCTCTTGGGCTGAG +
Preference number: 3 (lower is better)
Translates to: QRGGHHGRPVVS*WLVFTFSSWAE
Trigger: CTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp ATCCCTTTGGGAGTCAGCCCCAGCTCAAGTCCTAGTTaGCAAAAGCCACAGGCTGGGTGTGGCAGGCGGGCT +
Preference number: 3 (lower is better)
Translates to: IPLGVSPSSSPS*QKPQAGCGRRA
Trigger: AGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGCCAACTAGGACTTGAGCTGGGGCTGACTCCCAAAGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp CTAGGGTACCAGCTGGATCTGCTGTGTCTGCAGGAGTaGGCTGCATCCCCGGAAGTTGAGGTTCCCTCAGCA +
Preference number: 3 (lower is better)
Translates to: LGYQLDLLCLQE*AASPEVEVPSA
Trigger: TGCTGAGGGAACCTCAACTTCCGGGGATGCAGCCCACTCCTGCAGACACAGCAGATCCAGCTGGTACCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp GCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTaGCTTCAGCTCACCCCTGGGAGGGGAGCTATGCTG +
Preference number: 3 (lower is better)
Translates to: ARMSGLLLQLHL*LQLTPGRGAML
Trigger: CAGCATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp ACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTCTGCATCCCCGGAAGTaGAGGTTCCCTCAGCATCTC +
Preference number: 3 (lower is better)
Translates to: TGGQEVPGCQVCCFSCICLHPRK*RFPQHL
Trigger: GAGATGCTGAGGGAACCTCAACTTCCGGGGATGCAG...ACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTGGACAGGGCATCCCTTaGGGAGTCAGCCCCAGCTCA +
Preference number: 3 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGGQGIP*GVSPSS
Trigger: TGAGCTGGGGCTGACTCCCAAAGGGATGCCCTGTCC...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTGGTGCCTACTTTTTGTaGCCTTTCAGACACTTGGTT +
Preference number: 3 (lower is better)
Translates to: ERPAGRASWQTRGFMLACGAYFL*PFRHLV
Trigger: AACCAAGTGTCTGAAAGGCAACAAAAAGTAGGCACC...ACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGACAGGGCATCCCTTaGGGAGTCAGCCCCAGCTCA +
Preference number: 3 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVGQGIP*GVSPSS
Trigger: TGAGCTGGGGCTGACTCCCAAAGGGATGCCCTGTCC...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp ATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCCATGGGAAAGGGGCTTCTaGATGTTCAGTCCATGTAGC +
Preference number: 3 (lower is better)
Translates to: ISRVSLVPRAYLHTLCQPWERGF*MFSPCS
Trigger: GCTACATGGACTGAACATCAAGAAGCCCCTTTCCCA...TGGCTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp GGCGGCAGGTGGGAGCCCTATGGGAAAGGGGCTTCTTaGTGTTCAGTCCATGTAGCATGGTTGTGTGGCAGT +
Preference number: 3 (lower is better)
Translates to: GGRWEPYGKGAS*CSVHVAWLCGS
Trigger: ACTGCCACACAACCATGCTACATGGACTGAACATCAAGAAGCCCCTTTCCCATAGGGCTCCCACCTGCCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp AGTCACGGAGCTGAGCTCTGCTCTTCTTCACTGGTATaGATCACTGCTGGGGGCCAGGAGGTGCCAGGATGT +
Preference number: 3 (lower is better)
Translates to: SHGAELCSSSLV*ITAGGQEVPGC
Trigger: ACATCCTGGCACCTCCTGGCCCCCAGCAGTGATTCATACCAGTGAAGAAGAGCAGAGCTCAGCTCCGTGACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
3UTR CCA 72 bp ACATGGCAGCAAAGACTTCTCAGCAGCCTTGAGACCTaGTGTCATTCTCCTGGCTCTGTAGGCTCCAGCCGC +
Preference number: 3 (lower is better)
Translates to: TWQQRLLSSLET*CHSPGSVGSSR
Trigger: GCGGCTGGAGCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCTGCTTCAGCTGCATTaGTGGCTTCAGCTCACCCCT +
Preference number: 3 (lower is better)
Translates to: AGAGGVVMPFPDMAAKTSLLQLH*WLQLTP
Trigger: AGGGGTGAGCTGAAGCCACAAATGCAGCTGAAGCAG...AGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGTGGTTTCATGCTGGCTaGTCTTCACCTTCAGCTCTT +
Preference number: 3 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQWFHAG*SSPSAL
Trigger: AAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCA...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGAATTGGAGCTGGGGCTaGGCTGAGGTTTCAGCTGGG +
Preference number: 3 (lower is better)
Translates to: LRTPIDQADGGTATRPTQNWSWG*AEVSAG
Trigger: CCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAATT...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp GTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATaGCAGCCAAATGAGTATGGGTCATGGCTTTTGTGC +
Preference number: 3 (lower is better)
Translates to: VSLVPRAYLHTL*QPNEYGSWLLC
Trigger: GCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp GACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTaGAGCTGGGGCTTGGCTGAGGTTTCAGCTGGGCAA +
Preference number: 3 (lower is better)
Translates to: DCRHKQLPAQGN*SWGLAEVSAGQ
Trigger: TTGCCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp CACTGGAGCAGAATGAGGAAGCCAGATCGTGTTCTGTaGTGGTCTGAGAGTGTAGAGGGTGAGGCCAATGGG +
Preference number: 3 (lower is better)
Translates to: HWSRMRKPDRVL*WSESVEGEANG
Trigger: CCCATTGGCCTCACCCTCTACACTCTCAGACCATCACAGAACACGATCTGGCTTCCTCATTCTGCTCCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR GCA 72 bp GGCAGATGGAGGAACCGCAACAAGGCCTACTCAGACTaGAGACACAAGCAGCTACCAGCACAAGGTAATTGG +
Preference number: 3 (lower is better)
Translates to: GRWRNRNKAYSD*RHKQLPAQGNW
Trigger: CCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp AGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTaGGGCTTGGCTGAGGTTTCAGCTGGGCAATCACCA +
Preference number: 3 (lower is better)
Translates to: RHKQLPAQGNWS*GLAEVSAGQSP
Trigger: TGGTGATTGCCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp CAGGGGCACAGGGTGGAGGATCTGTCAGAACATCAGTaGAATTGGTCTCAGAACACCAATAGACCAGGCAGA +
Preference number: 3 (lower is better)
Translates to: QGHRVEDLSEHQ*NWSQNTNRPGR
Trigger: TCTGCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTGCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTTGGGAAAGGGGCTTCTaGATGTTCAGTCCATGTAGC +
Preference number: 3 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGWERGF*MFSPCS
Trigger: GCTACATGGACTGAACATCAAGAAGCCCCTTTCCCA...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp AGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACTGCATCCCCGGAAGTaGAGGTTCCCTCAGCATCTC +
Preference number: 3 (lower is better)
Translates to: RVEDLSEHQWNWSQNTNRLHPRK*RFPQHL
Trigger: GAGATGCTGAGGGAACCTCAACTTCCGGGGATGCAG...TCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGTATGGGTCATGGCTTTaGTGCAAAAATAAACTTGTG +
Preference number: 3 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQYGSWL*CKNKLV
Trigger: CACAAGTTTATTTTTGCACAAAAGCCATGACCCATA...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp ATGTTCAGTCCATGTAGCATGGTTGTGTGGCAGTTGTaGGTCAGGCCAGGTCAGTGGGTGAGTAGATGTCTG +
Preference number: 3 (lower is better)
Translates to: MFSPCSMVVWQL*VRPGQWVSRCL
Trigger: CAGACATCTACTCACCCACTGACCTGGCCTGACTCACAACTGCCACACAACCATGCTACATGGACTGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp TGGAATTGGTCTCAGAACACCAATAGACCAGGCAGATaGAGGAACCGCAACAAGGCCTACTCAGACTGCAGA +
Preference number: 3 (lower is better)
Translates to: WNWSQNTNRPGR*RNRNKAYSDCR
Trigger: TCTGCAGTCTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACCAATTCCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp CACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTaGTCTCAGAACACCAATAGACCAGGCAGATGGAGG +
Preference number: 3 (lower is better)
Translates to: HRVEDLSEHQWN*SQNTNRPGRWR
Trigger: CCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGTTTGGTGCCTACTTTTaGTTGCCTTTCAGACACTTG +
Preference number: 3 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQFGAYF*LPFRHL
Trigger: CAAGTGTCTGAAAGGCAACAAAAAGTAGGCACCAAA...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp TTGATTACCCAAAGAGCCCTGGACACTGGAGCAGAATaGGGAAGCCAGATCGTGTTCTGTGATGGTCTGAGA +
Preference number: 3 (lower is better)
Translates to: LITQRALDTGAE*GSQIVFCDGLR
Trigger: TCTCAGACCATCACAGAACACGATCTGGCTTCCTCATTCTGCTCCAGTGTCCAGGGCTCTTTGGGTAATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR TCA 72 bp AGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTaGAAGTGTCTTGGAACCCATGTAGGCAGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: RHLLSVILFSLP*KCLGTHVGSFR
Trigger: CCTGAAGCTGCCTACATGGGTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTATTTGGTGCCTACTTTTaGTTGCCTTTCAGACACTTG +
Preference number: 3 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVFGAYF*LPFRHL
Trigger: CAAGTGTCTGAAAGGCAACAAAAAGTAGGCACCAAA...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR-3UTR CAA 90 bp AGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACAGACACTTGGTTTCTaGATTACCCAAAGAGCCCTG +
Preference number: 3 (lower is better)
Translates to: RVEDLSEHQWNWSQNTNRQTLGF*ITQRAL
Trigger: CAGGGCTCTTTGGGTAATCAAGAAACCAAGTGTCTG...TCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp GTTTTGGTGCCTACTTTTTGTTGCCTTTCAGACACTTaGTTTCTTGATTACCCAAAGAGCCCTGGACACTGG +
Preference number: 3 (lower is better)
Translates to: VLVPTFCCLSDT*FLDYPKSPGHW
Trigger: CCAGTGTCCAGGGCTCTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCAACAAAAAGTAGGCACCAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CCA 72 bp ATCATATATAGATATATATCTGTCTTTGAGGTAAGATaGTATGGGCAGACAGCCTGGCTGGATATTCAAGGC +
Preference number: 3 (lower is better)
Translates to: IIYRYISVFEVR*YGQTAWLDIQG
Trigger: GCCTTGAATATCCAGCCAGGCTGTCTGCCCATACCATCTTACCTCAAAGACAGATATATATCTATATATGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTCGTGCATCTCACGCTTaGCCCAGCGCTCCAGGTTGG +
Preference number: 4 (lower is better)
Translates to: RPAGRASWQTRGFMLACLRASHA*PSAPGW
Trigger: CCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACG...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTCTGTGGGCAGTGGGGTaGCAGAAGGCTCAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: RPAGRASWQTRGFMLACLLWAVG*QKAQLP
Trigger: AGGCAGCTGAGCCTTCTGGCACCCCACTGCCCACAG...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTGGCGATGGTCTCCTaGCAGCGGCAAAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: SGQRGGHHGRPVVSCWLVLAMVS*QRQRQA
Trigger: GGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAA...GACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGCTCCAGGTTGGCGATaGTCTCCTGGCAGCGGCAAA +
Preference number: 4 (lower is better)
Translates to: VSGQRGGHHGRPVVSCWLAPGWR*SPGSGK
Trigger: TTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGC...AAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGCCAGCTCCCGCTGAATaGCTTCACGGGAGAGTGTAC +
Preference number: 4 (lower is better)
Translates to: NGRQLVSGQRGGHHGRPVPAPAE*LHGRVY
Trigger: GTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTGG...CACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTGCTGCTCCAGGGTCTTaGGGAGTGGGTGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: RPAGRASWQTRGFMLACLAAPGS*GVGGAE
Trigger: TTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGC...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTGGCGCAGAAAGCGCTTaGGTTTGGGCTGCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPAGAESA*VWAAGC
Trigger: GCACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCC...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTGCTGTGAGTCGCCGGTaGGCACGTAGCCGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPAAVSRR*ARSRPS
Trigger: ACTTGGACGGCTACGTGCCCACCGGCGACTCACAGC...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTCCAGCTCCCGCTGAATaGCTTCACGGGAGAGTGTAC +
Preference number: 4 (lower is better)
Translates to: VSGQRGGHHGRPVVSCWLPAPAE*LHGRVY
Trigger: GTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTGG...AAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAGGACCAGGGCAGACAGATGAGGGGTAGGCGGCAGGTGGGAGCCCTATGGGAACAGGGTCTTGGGGAGTaGGTGGCGCAGAAAGCGCTT +
Preference number: 4 (lower is better)
Translates to: QDQGRQMRGRRQVGALWEQGLGE*VAQKAL
Trigger: AAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTG...TTCCCATAGGGCTCCCACCTGCCGCCTACCCCTCATCTGTCTGCCCTGGTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp TGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTGGCTTCTTCCAGCGCTGTaGGTCGCCGGTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: WGPGGARMSGLLLQLHLWLLPAL*VAGGHV
Trigger: TACGTGCCCACCGGCGACTCACAGCGCTGGAAGAAG...CCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp AATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTGCCCACCACATACTaGATGATCTCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: NGRQLVSGQRGGHHGRPVVPTTY*MISSSS
Trigger: TGAGGAGGAGGAGATCATTCAGTATGTGGTGGGCAC...CACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGGCTGTGAGTCGCCGGTaGGCACGTAGCCGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: HWGPGGARMSGLLLQLHLAVSRR*ARSRPS
Trigger: ACTTGGACGGCTACGTGCCCACCGGCGACTCACAGC...CAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CTTGAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCCCAGCGCTCCAGGTTaGCGATGGTCTCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LEISRVSLVPRAYLHTLCPSAPG*RWSPGS
Trigger: GCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGG...GCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp ATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCCAGGTATTTGCCGCCCATaGACTCCAGGCGGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: ISRVSLVPRAYLHTLCQPGICRP*TPGGQP
Trigger: GGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACC...TGGCTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp TGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTGGTTCTCCTGCGGCAGGTaGCGGGGTGATGGCATAGGG +
Preference number: 4 (lower is better)
Translates to: WGPGGARMSGLLLQLHLWFSCGR*RGDGIG
Trigger: CCCTATGCCATCACCCCGCCACCTGCCGCAGGAGAA...CCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CCAAGACTGGCCGGTTGCCCTGGGCGGCAGCTAGGGTACCAGCTGGATCTGCTGGCTCAGGAACTCCCGTaGGTCCTCGAAGATCTGTGT +
Preference number: 4 (lower is better)
Translates to: PRLAGCPGRQLGYQLDLLAQELP*VLEDLC
Trigger: ACACAGATCTTCGAGGACCCACGGGAGTTCCTGAGC...CAGCAGATCCAGCTGGTACCCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGACTCCCACCACTTCTTaGCTGGCCCATTCATGTGGT +
Preference number: 4 (lower is better)
Translates to: NGRQLVSGQRGGHHGRPVTPTTS*LAHSCG
Trigger: ACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGT...CACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CCCAGCTCAAGTCCTAGTTGGCAAAAGCCACAGGCTGGGTGTGGCAGGCGGGCTATCCTCTGTGGGCAGTaGGGTGCCAGAAGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: PSSSPSWQKPQAGCGRRAILCGQ*GARRLS
Trigger: GCTGAGCCTTCTGGCACCCCACTGCCCACAGAGGAT...AGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGCCAACTAGGACTTGAGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CCAGCTCAAGTCCTAGTTGGCAAAAGCCACAGGCTGGGTGTGGCAGGCGGGCTGACCTCCCTCCACACGTaGATCTCACGCTTGACCCAG +
Preference number: 4 (lower is better)
Translates to: PAQVLVGKSHRLGVAGGLTSLHT*ISRLTQ
Trigger: CTGGGTCAAGCGTGAGATGCACGTGTGGAGGGAGGT...CAGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGCCAACTAGGACTTGAGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTCCCCTCTGGATAAGCTaGTCCAGGGTCTTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPAPLWIS*SRVLGS
Trigger: ACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGG...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp ATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCCATCTGCAGGATCACATTaGGTTTGGCGGCCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: ISRVSLVPRAYLHTLCQPSAGSH*VWRPAH
Trigger: GTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGA...TGGCTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTTCTGCAGGATCACATTaGGTTTGGCGGCCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPSAGSH*VWRPAH
Trigger: GTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGA...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGGCTCCAGGTTGGCGATaGTCTCCTGGCAGCGGCAAA +
Preference number: 4 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQAPGWR*SPGSGK
Trigger: TTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGC...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGATCCTCTGTGGGCAGTaGGGTGCCAGAAGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: HWGPGGARMSGLLLQLHLILCGQ*GARRLS
Trigger: GCTGAGCCTTCTGGCACCCCACTGCCCACAGAGGAT...CAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGCCCAGCGCTCCAGGTTaGCGATGGTCTCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQPSAPG*RWSPGS
Trigger: GCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGG...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGGAGGAACTGGTCGAGTaGTTCACCCTGCTTCTGCGG +
Preference number: 4 (lower is better)
Translates to: HWGPGGARMSGLLLQLHLEELVE*FTLLLR
Trigger: CCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTC...CAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
3UTR CAA 72 bp GGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTaGTGGCTTCAGCTCACCCCTGGGAGGGGAGCTATG +
Preference number: 4 (lower is better)
Translates to: GARMSGLLLQLH*WLQLTPGRGAM
Trigger: CATAGCTCCCCTCCCAGGGGTGAGCTGAAGCCACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 72 bp GCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTaGTCTTCACCTTCAGCTCTTGGGCTGAGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: AGIMADPWFHAG*SSPSALGLSWG
Trigger: ACCCCAGCTCAGCCCAAGAGCTGAAGGTGAAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp TGCTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGGGCAAAGACAGGCCTTaGTGGACTTCTTCCAGCGCT +
Preference number: 4 (lower is better)
Translates to: CWGPGGARMSGLLLQLHLGKDRP*WTSSSA
Trigger: AGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCC...CAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
CDS-3UTR TCA 90 bp ACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTTCACCGAGCCCTGCTTaGACTCCCACCACTTCTTGG +
Preference number: 4 (lower is better)
Translates to: TGGQEVPGCQVCCFSCICSPSPA*TPTTSW
Trigger: CCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGA...ACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp GCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTGCTTTCTTCACCGAGCCCTaGTTGAACTCCCACCACTTC +
Preference number: 4 (lower is better)
Translates to: AMQRAGLCAKRTKGTDPAFFTEP*LNSHHF
Trigger: GAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAAGAA...AGCAGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCGTGGAGGCCGCCGGTaGTCATATGGTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: AGAGGVVMPFPDMAAKTSRGGRR*SYGPAP
Trigger: TGGAGCTGGACCATATGACCACCGGCGGCCTCCACG...AGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCGGTATTTGCCGCCCATaGACTCCAGGCGGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: VSWNPCRQLQEKRGWCWCGICRP*TPGGQP
Trigger: GGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACC...GCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CCAGCTCAAGTCCTAGTTGGCAAAAGCCACAGGCTGGGTGTGGCAGGCGGGCTGTTGCCCATCCTCACCTaGCCCCCAAGACTGATATTG +
Preference number: 4 (lower is better)
Translates to: PAQVLVGKSHRLGVAGGLLPILT*PPRLIL
Trigger: CAATATCAGTCTTGGGGGCCAGGTGAGGATGGGCAA...CAGCCCGCCTGCCACACCCAGCCTGTGGCTTTTGCCAACTAGGACTTGAGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGAGGCAGGGTCTTGGGGAGTaGGTGGCGCAGAAAGCGCTT +
Preference number: 4 (lower is better)
Translates to: ADTSSYQHKVIGAGAWLRQGLGE*VAQKAL
Trigger: AAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTG...CCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCGCTGCTCCAGGGTCTTaGGGAGTGGGTGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: VSWNPCRQLQEKRGWCWCAAPGS*GVGGAE
Trigger: TTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGC...GCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGCCACCACATACTGAATaGTCTCCTCCTCCTCAGCGT +
Preference number: 4 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQPPHTE*SPPPQR
Trigger: ACGCTGAGGAGGAGGAGATCATTCAGTATGTGGTGG...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGCTTCTCCTGCGGCAGGTaGCGGGGTGATGGCATAGGG +
Preference number: 4 (lower is better)
Translates to: QRLLSSLETWCHSPGSVGFSCGR*RGDGIG
Trigger: CCCTATGCCATCACCCCGCCACCTGCCGCAGGAGAA...GCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTAGGTACTCTTCCAGGTaGCTCAGGAACTCCCGTGGG +
Preference number: 4 (lower is better)
Translates to: GAGAGGVVMPFPDMAAKTRYSSR*LRNSRG
Trigger: CCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCT...AGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CACTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGACTCCCACCACTTCTTaGCTGGCCCATTCATGTGGT +
Preference number: 4 (lower is better)
Translates to: HWGPGGARMSGLLLQLHLTPTTS*LAHSCG
Trigger: ACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGT...CAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CTTGAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCTCCACATACAGTGTCTaGTACAGGTCCCGCTTGCGC +
Preference number: 4 (lower is better)
Translates to: LEISRVSLVPRAYLHTLCSTYSV*YRSRLR
Trigger: GCGCAAGCGGGACCTGTACCAGACACTGTATGTGGA...GCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp GGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTGGCAAAGACAGGCCTTaGTGGACTTCTTCCAGCGCT +
Preference number: 4 (lower is better)
Translates to: GAGAGGVVMPFPDMAAKTGKDRP*WTSSSA
Trigger: AGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCC...AGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CATCCCCGGAAGTTGAGGTTCCCTCAGCATCTCTGCTTTAGCATCTGCCCTAGGCGCTTGAGTTTGGGCTaGAGGGTGCCCACCACATAC +
Preference number: 4 (lower is better)
Translates to: HPRKLRFPQHLCFSICPRRLSLG*RVPTTY
Trigger: GTATGTGGTGGGCACCCTGCAGCCCAAACTCAAGCG...CCTAGGGCAGATGCTAAAGCAGAGATGCTGAGGGAACCTCAACTTCCGGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CCTACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAGCCAGAAGGCTCAGCTaGCTGCTCCAGGCCGTCCTG +
Preference number: 4 (lower is better)
Translates to: PTYTPYASQMSMGHGFCAARRLS*LLQAVL
Trigger: CAGGACGGCCTGGAGCAGGCAGCTGAGCCTTCTGGC...TGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATCGGCTCGCTGCCCACTaGGTATTTGCCGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNRLAAH*VFAAHG
Trigger: TCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCG...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGAGGTACTCTTCCAGGTaGCTCAGGAACTCCCGTGGG +
Preference number: 4 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQRYSSR*LRNSRG
Trigger: CCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCT...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 72 bp AGGCGGCAGGTGGGAGCCCTATGGGAAAGGGGCTTCTaGATGTTCAGTCCATGTAGCATGGTTGTGTGGCAG +
Preference number: 4 (lower is better)
Translates to: RRQVGALWERGF*MFSPCSMVVWQ
Trigger: CTGCCACACAACCATGCTACATGGACTGAACATCAAGAAGCCCCTTTCCCATAGGGCTCCCACCTGCCGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 72 bp TGCTGTGTCTGCAGGAGTGGGCTGCATCCCCGGAAGTaGAGGTTCCCTCAGCATCTCTGCTTTAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: CCVCRSGLHPRK*RFPQHLCFSIC
Trigger: GCAGATGCTAAAGCAGAGATGCTGAGGGAACCTCAACTTCCGGGGATGCAGCCCACTCCTGCAGACACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 72 bp AAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTaGGCTGAGGTTTCAGCTGGGCAATCACCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: KQLPAQGNWSWG*AEVSAGQSPGR
Trigger: CCTGCCTGGTGATTGCCCAGCTGAAACCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp TGGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACGTGCCCACCACATACTaGATGATCTCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: WCWCWWCGDALSRHGSKDVPTTY*MISSSS
Trigger: TGAGGAGGAGGAGATCATTCAGTATGTGGTGGGCAC...GTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp CCTACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAGGCGCAGAAAGCGCTTaGGTTTGGGCTGCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: PTYTPYASQMSMGHGFCAGAESA*VWAAGC
Trigger: GCACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCC...TGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGGTTTCATGCTGGCTTGTCTTGTACCCTCACTGTATTaGAGAAACTCCTTCTTGAAC +
Preference number: 4 (lower is better)
Translates to: RPAGRASWQTRGFMLACLVPSLY*RNSFLN
Trigger: GTTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTAC...AAGACAAGCCAGCATGAAACCACGGGTCTGCCATGATGCCCGCCCCGCTGGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATGGTACAGGTCCCGCTTaGGCCAGAGGAACTGGTCGA +
Preference number: 4 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNGTGPA*ARGTGR
Trigger: TCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACC...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp TGCCTTTCAGACACTTGGTTTCTTGATTACCCAAAGAGCCCTGGACACTGGAGCCTGTGGGCAGTGGGGTaGCAGAAGGCTCAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: CLSDTWFLDYPKSPGHWSLWAVG*QKAQLP
Trigger: AGGCAGCTGAGCCTTCTGGCACCCCACTGCCCACAG...GCTCCAGTGTCCAGGGCTCTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGAGGCTCGCTCCACCTGCTTaGACACTTCGGTCAACAGAT +
Preference number: 4 (lower is better)
Translates to: ADTSSYQHKVIGAGAWLRLAPPA*TLRSTD
Trigger: ATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAG...CCTCAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CCTTTCCAGACATGGCAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTTGGCGATGGTCTCCTaGCAGCGGCAAAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: PFQTWQQRLLSSLETWCHLAMVS*QRQRQA
Trigger: GGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAA...ATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGTCTGGAAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTACCGTCTCATCCTCTGTaGGCAGTGGGGTGCCAGAAG +
Preference number: 4 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVPSHPL*AVGCQK
Trigger: CTTCTGGCACCCCACTGCCCACAGAGGATGAGACGG...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATACCTCCCTCCACACGTaGATCTCACGCTTGACCCAG +
Preference number: 4 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNTSLHT*ISRLTQ
Trigger: CTGGGTCAAGCGTGAGATGCACGTGTGGAGGGAGGT...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCCGTGGAGGCCGCCGGTaGTCATATGGTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGRGGRR*SYGPAP
Trigger: TGGAGCTGGACCATATGACCACCGGCGGCCTCCACG...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp TGCCAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTGGCGGCTCGCTGCCCACTaGGTATTTGCCGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: CQAPPLCNLVFSALKVSWRLAAH*VFAAHG
Trigger: TCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCG...CCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCTTGCCCATCCTCACCTaGCCCCCAAGACTGATATTG +
Preference number: 4 (lower is better)
Translates to: VSWNPCRQLQEKRGWCWCLPILT*PPRLIL
Trigger: CAATATCAGTCTTGGGGGCCAGGTGAGGATGGGCAA...GCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGGCTGGCCCATTCATGTaGTTCTGGATCTGGGACAGC +
Preference number: 4 (lower is better)
Translates to: LRTPIDQADGGTATRPTQAGPFM*FWIWDS
Trigger: GCTGTCCCAGATCCAGAACCACATGAATGGGCCAGC...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGCCACCACTTCTTGGCTaGCCCATTCATGTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQPPLLG*PIHVVL
Trigger: CAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGG...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGAGGAACTGGTCGAGTaGTTCACCCTGCTTCTGCGG +
Preference number: 4 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVEELVE*FTLLLR
Trigger: CCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTC...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGCTCCACATACAGTGTCTaGTACAGGTCCCGCTTGCGC +
Preference number: 4 (lower is better)
Translates to: QRLLSSLETWCHSPGSVGSTYSV*YRSRLR
Trigger: GCGCAAGCGGGACCTGTACCAGACACTGTATGTGGA...GCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp ACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCAAAACTTCTTCCAGCGCTGTaGGTCGCCGGTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: TYTPYASQMSMGHGFCAKLLPAL*VAGGHV
Trigger: TACGTGCCCACCGGCGACTCACAGCGCTGGAAGAAG...TTTTGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp TGCCTTTCAGACACTTGGTTTCTTGATTACCCAAAGAGCCCTGGACACTGGAGCCGCTTGAGTTTGGGCTaGAGGGTGCCCACCACATAC +
Preference number: 4 (lower is better)
Translates to: CLSDTWFLDYPKSPGHWSRLSLG*RVPTTY
Trigger: GTATGTGGTGGGCACCCTGCAGCCCAAACTCAAGCG...GCTCCAGTGTCCAGGGCTCTTTGGGTAATCAAGAAACCAAGTGTCTGAAAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATGCTGGCCCATTCATGTaGTTCTGGATCTGGGACAGC +
Preference number: 4 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNAGPFM*FWIWDS
Trigger: GCTGTCCCAGATCCAGAACCACATGAATGGGCCAGC...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTCCACCACTTCTTGGCTaGCCCATTCATGTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGPPLLG*PIHVVL
Trigger: CAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGG...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTACTTCCATACCCCTCTaGATAAGCTGCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGTSIPL*ISCSRV
Trigger: GACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGT...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATCCGTCTCATCCTCTGTaGGCAGTGGGGTGCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HRVEDLSEHQWNWSQNTNPSHPL*AVGCQK
Trigger: CTTCTGGCACCCCACTGCCCACAGAGGATGAGACGG...ATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp TGCCAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTGGTCACCGAGCCCTGCTTaGACTCCCACCACTTCTTGG +
Preference number: 4 (lower is better)
Translates to: CQAPPLCNLVFSALKVSWSPSPA*TPTTSW
Trigger: CCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGA...CCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp GTGTCTTGGAACCCATGTAGGCAGCTTCAGGAGAAGAGAGGATGGTGCTGGTGCGCAGAAACTCCTTCTTaGACTCCACCCAGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: VSWNPCRQLQEKRGWCWCAETPS*TPPSSS
Trigger: TGAAGAACTGGGTGGAGTTCAAGAAGGAGTTTCTGC...GCACCAGCACCATCCTCTCTTCTCCTGAAGCTGCCTACATGGGTTCCAAGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR TCA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTACCACCACATACTGAATaGTCTCCTCCTCCTCAGCGT +
Preference number: 4 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVPPHTE*SPPPQR
Trigger: ACGCTGAGGAGGAGGAGATCATTCAGTATGTGGTGG...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CAGGCACCTCCTCTCTGTAATCTTGTTTTCTCTGCCTTGAAAGTGTCTTGGAACGGTACAGGTCCCGCTTaGGCCAGAGGAACTGGTCGA +
Preference number: 4 (lower is better)
Translates to: QAPPLCNLVFSALKVSWNGTGPA*ARGTGR
Trigger: TCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACC...GTTCCAAGACACTTTCAAGGCAGAGAAAACAAGATTACAGAGAGGAGGTGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCCCCCTCTGGATAAGCTaGTCCAGGGTCTTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGPLWIS*SRVLGS
Trigger: ACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGG...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGGCTCAGGAACTCCCGTaGGTCCTCGAAGATCTGTGT +
Preference number: 4 (lower is better)
Translates to: NKAYSDCRHKQLPAQGNWAQELP*VLEDLC
Trigger: ACACAGATCTTCGAGGACCCACGGGAGTTCCTGAGC...CCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATACTTCCATACCCCTCTaGATAAGCTGCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNTSIPL*ISCSRV
Trigger: GACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGT...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp GGTCTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCGGCACTTACCAATCTaGAGGATCACATTGGGTTTG +
Preference number: 4 (lower is better)
Translates to: GLRTPIDQADGGTATRPTRHLPI*RITLGL
Trigger: CAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCG...AGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp GCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTGTACCCTCACTGTATTaGAGAAACTCCTTCTTGAAC +
Preference number: 4 (lower is better)
Translates to: AGAGGVVMPFPDMAAKTSVPSLY*RNSFLN
Trigger: GTTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTAC...AGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CTCAGAACACCAATAGACCAGGCAGATGGAGGAACCGCAACAAGGCCTACTCAGCCATTCATGTGGTTCTaGATCTGGGACAGCCAATAT +
Preference number: 4 (lower is better)
Translates to: LRTPIDQADGGTATRPTQPFMWF*IWDSQY
Trigger: ATATTGGCTGTCCCAGATCCAGAACCACATGAATGG...CTGAGTAGGCCTTGTTGCGGTTCCTCCATCTGCCTGGTCTATTGGTGTTCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
3UTR CAA 72 bp TGGTATGGGCAGACAGCCTGGCTGGATATTCAAGGCTaGGTGAAAATAGGGGATAGCCACACTCTCTTGAGA +
Preference number: 4 (lower is better)
Translates to: WYGQTAWLDIQG*VKIGDSHTLLR
Trigger: TCTCAAGAGAGTGTGGCTATCCCCTATTTTCACCAAGCCTTGAATATCCAGCCAGGCTGTCTGCCCATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGCATGTGGTTCTGGATCTaGGACAGCCAATATTCTTCA +
Preference number: 4 (lower is better)
Translates to: QRLLSSLETWCHSPGSVGMWFWI*DSQYSS
Trigger: TGAAGAATATTGGCTGTCCCAGATCCAGAACCACAT...GCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp CCTTTCCAGACATGGCAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATCCATTCATGTGGTTCTaGATCTGGGACAGCCAATAT +
Preference number: 4 (lower is better)
Translates to: PFQTWQQRLLSSLETWCHPFMWF*IWDSQY
Trigger: ATATTGGCTGTCCCAGATCCAGAACCACATGAATGG...ATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGTCTGGAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR GCA 90 bp CACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATCGGCACTTACCAATCTaGAGGATCACATTGGGTTTG +
Preference number: 4 (lower is better)
Translates to: HRVEDLSEHQWNWSQNTNRHLPI*RITLGL
Trigger: CAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCG...ATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CCA 90 bp AGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGAATGTGGTTCTGGATCTaGGACAGCCAATATTCTTCA +
Preference number: 4 (lower is better)
Translates to: RVEDLSEHQWNWSQNTNRMWFWI*DSQYSS
Trigger: TGAAGAATATTGGCTGTCCCAGATCCAGAACCACAT...TCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp AATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCGTGCACACCAGGGCTCGGTaGCCCATCCTCACCTGGCCC +
Preference number: 5 (lower is better)
Translates to: NGRQLVSGQRGGHHGRPVHTRAR*PILTWP
Trigger: GGGCCAGGTGAGGATGGGCAACCGAGCCCTGGTGTG...CACGGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp GCATCTCAGCTCGGCACTTACCAATCTGCAGGATCACATTGGGTTTaGCGGCCGGCCCACCCCGCGGGGCAGGGTAGGCGTGGAGGCCGC +
Preference number: 5 (lower is better)
Translates to: ASQLGTYQSAGSHWV*RPAHPAGQGRRGGR
Trigger: GCGGCCTCCACGCCTACCCTGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGATGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp CAGTGTGGCGGGCCGGCTCGCTGCCCACTGGGTATTTGCCGCCCATaGACTCCAGGCGGTCAGCCCACCTCTCCAGACGGTAGAAGACCT +
Preference number: 5 (lower is better)
Translates to: QCGGPARCPLGICRP*TPGGQPTSPDGRRP
Trigger: AGGTCTTCTACCGTCTGGAGAGGTGGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCCGCCACACTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CCAAGACTGGCCGGTTGCCCTGGGCGGCAGCTAGGGTACCAGCTGGATCTGCTGACCCAGCGCTCCAGGTaGGCGATGGTCTCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: PRLAGCPGRQLGYQLDLLTQRSR*AMVSWQ
Trigger: CTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGT...CAGCAGATCCAGCTGGTACCCTAGCTGCCGCCCAGGGCAACCGGCCAGTCTTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CAGGACCAGGGCAGACAGATGAGGGGTAGGCGGCAGGTGGGAGCCCTATGGGAAACCCAGCGCTCCAGGTaGGCGATGGTCTCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: QDQGRQMRGRRQVGALWETQRSR*AMVSWQ
Trigger: CTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGT...TTCCCATAGGGCTCCCACCTGCCGCCTACCCCTCATCTGTCTGCCCTGGTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp GGCAGTGGGGTGCCAGAAGGCTCAGCTGCCTGCTCCAGGCCGTCCTaGACTTCCATACCCCTCTGGATAAGCTGCTCCAGGGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: GSGVPEGSAACSRPS*TSIPLWISCSRVLG
Trigger: CCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGTGCAGGACGGCCTGGAGCAGGCAGCTGAGCCTTCTGGCACCCCACTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp GTTCCAGCATCTCAGCTCGGCACTTACCAATCTGCAGGATCACATTaGGTTTGGCGGCCGGCCCACCCCGCGGGGCAGGGTAGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: VPASQLGTYQSAGSH*VWRPAHPAGQGRRG
Trigger: TCCACGCCTACCCTGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGATGCTGGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 90 bp GCTCCAGGTTGGCGATGGTCTCCTGGCAGCGGCAAAGACAGGCCTTaGTGGACTTCTTCCAGCGCTGTGAGTCGCCGGTGGGCACGTAGC +
Preference number: 5 (lower is better)
Translates to: APGWRWSPGSGKDRP*WTSSSAVSRRWARS
Trigger: GCTACGTGCCCACCGGCGACTCACAGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp GTCCTCCGTACGTGTTCCAGCATCTCAGCTCGGCACTTACCAATCTaGAGGATCACATTGGGTTTGGCGGCCGGCCCACCCCGCGGGGCA +
Preference number: 5 (lower is better)
Translates to: VLRTCSSISARHLPI*RITLGLAAGPPRGA
Trigger: TGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGATGCTGGAACACGTACGGAGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp CAGTGTCTGGTACAGGTCCCGCTTGCGCCAGAGGAACTGGTCGAGTaGTTCACCCTGCTTCTGCGGCAGCTCCAGCTCCCGCTGAATGGC +
Preference number: 5 (lower is better)
Translates to: QCLVQVPLAPEELVE*FTLLLRQLQLPLNG
Trigger: GCCATTCAGCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GCTAATGGCAGGCAGCTAGTGAGCGGCCAGCGGGGCGGGCATCATGGCAGACCCTCTCGCTCCACCTGCTaGGACACTTCGGTCAACAGA +
Preference number: 5 (lower is better)
Translates to: ANGRQLVSGQRGGHHGRPSRSTC*DTSVNR
Trigger: TCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGA...GGGTCTGCCATGATGCCCGCCCCGCTGGCCGCTCACTAGCTGCCTGCCATTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp GTGAGTCGCCGGTGGGCACGTAGCCGTCCAAGTTGTTCTCCAGCTTaGCCACCGACCTGTGCAACCCTTTCAGCTCTCGCTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: VSRRWARSRPSCSPA*PPTCATLSALAPPA
Trigger: AGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCAAGCTGGAGAACAACTTGGACGGCTACGTGCCCACCGGCGACTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp GCCTGCTCCAGGCCGTCCTGCACTTCCATACCCCTCTGGATAAGCTaGTCCAGGGTCTTGGGGAGTGGGTGGCGCAGAAAGCGCTTGAGT +
Preference number: 5 (lower is better)
Translates to: ACSRPSCTSIPLWIS*SRVLGSGWRRKRLS
Trigger: ACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGTGCAGGACGGCCTGGAGCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp GTCTCATCCTCTGTGGGCAGTGGGGTGCCAGAAGGCTCAGCTGCCTaGTCCAGGCCGTCCTGCACTTCCATACCCCTCTGGATAAGCTGC +
Preference number: 5 (lower is better)
Translates to: VSSSVGSGVPEGSAA*SRPSCTSIPLWISC
Trigger: GCAGCTTATCCAGAGGGGTATGGAAGTGCAGGACGGCCTGGAGCAGGCAGCTGAGCCTTCTGGCACCCCACTGCCCACAGAGGATGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp ACCCACCTGCCGCAGGTACTCTTCCAGGTGGCTCAGGAACTCCCGTaGGTCCTCGAAGATCTGTGTATCCACACCAGGGCTCGGTTGCCC +
Preference number: 5 (lower is better)
Translates to: THLPQVLFQVAQELP*VLEDLCIHTRARLP
Trigger: GGGCAACCGAGCCCTGGTGTGGATACACAGATCTTCGAGGACCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCTGCGGCAGGTGGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp TCCACATACAGTGTCTGGTACAGGTCCCGCTTGCGCCAGAGGAACTaGTCGAGTGGTTCACCCTGCTTCTGCGGCAGCTCCAGCTCCCGC +
Preference number: 5 (lower is better)
Translates to: STYSVWYRSRLRQRN*SSGSPCFCGSSSSR
Trigger: GCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CTTAAGGCTCCTGCAAGGGTCTGGTCGGGGAGCCAAAGGCCATGCAGCGAGCTGAGAAAGCGCTTGAGTTaGGGCTGCAGGGTGCCCACC +
Preference number: 5 (lower is better)
Translates to: LKAPARVWSGSQRPCSELRKRLS*GCRVPT
Trigger: GGTGGGCACCCTGCAGCCCAAACTCAAGCGCTTTCT...CAGCTCGCTGCATGGCCTTTGGCTCCCCGACCAGACCCTTGCAGGAGCCTTAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 90 bp TCTCCAGACGGTAGAAGACCTCCCTCCACACGTGCATCTCACGCTTaGCCCAGCGCTCCAGGTTGGCGATGGTCTCCTGGCAGCGGCAAA +
Preference number: 5 (lower is better)
Translates to: SPDGRRPPSTRASHA*PSAPGWRWSPGSGK
Trigger: TTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGTGTGGAGGGAGGTCTTCTACCGTCTGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp CCTCCTCCTCAGCGTCCACATACAGTGTCTGGTACAGGTCCCGCTTaGGCCAGAGGAACTGGTCGAGTGGTTCACCCTGCTTCTGCGGCA +
Preference number: 5 (lower is better)
Translates to: PPPQRPHTVSGTGPA*ARGTGRVVHPASAA
Trigger: TGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTGAGGAGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp TCCATACCCCTCTGGATAAGCTGCTCCAGGGTCTTGGGGAGTGGGTaGCGCAGAAAGCGCTTGAGTTTGGGCTGCAGGGTGCCCACCACA +
Preference number: 5 (lower is better)
Translates to: SIPLWISCSRVLGSG*RRKRLSLGCRVPTT
Trigger: TGTGGTGGGCACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp CACTTCCATACCCCTCTGGATAAGCTGCTCCAGGGTCTTGGGGAGTaGGTGGCGCAGAAAGCGCTTGAGTTTGGGCTGCAGGGTGCCCAC +
Preference number: 5 (lower is better)
Translates to: HFHTPLDKLLQGLGE*VAQKALEFGLQGAH
Trigger: GTGGGCACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGACGTGCATCTCACGCTaGACCCAGCGCTCCAGGTTG +
Preference number: 5 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQTCISR*TQRSRL
Trigger: CAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGT...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 90 bp CTGGCAGCGGCAAAGACAGGCCTTGATGGACTTCTTCCAGCGCTGTaGGTCGCCGGTGGGCACGTAGCCGTCCAAGTTGTTCTCCAGCTT +
Preference number: 5 (lower is better)
Translates to: LAAAKTGLDGLLPAL*VAGGHVAVQVVLQL
Trigger: AAGCTGGAGAACAACTTGGACGGCTACGTGCCCACCGGCGACTCACAGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 90 bp CCCATCCTCACCTGGCCCCCAAGACTGATATTGCTGAGCCTCAACTaGCTCCTGTTCAGGCAGTTCTCCTGCGGCAGGTGGCGGGGTGAT +
Preference number: 5 (lower is better)
Translates to: PILTWPPRLILLSLN*LLFRQFSCGRWRGD
Trigger: ATCACCCCGCCACCTGCCGCAGGAGAACTGCCTGAACAGGAGTCAGTTGAGGCTCAGCAATATCAGTCTTGGGGGCCAGGTGAGGATGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp CCTTTCAGCTCTCGCTCCACCTGCTTGGACACTTCGGTCAACAGATaGCGGTGGGTCCTCCGTACGTGTTCCAGCATCTCAGCTCGGCAC +
Preference number: 5 (lower is better)
Translates to: PFSSRSTCLDTSVNR*RWVLRTCSSISARH
Trigger: GTGCCGAGCTGAGATGCTGGAACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp TGCCCACCGACCTGTGCAACCCTTTCAGCTCTCGCTCCACCTGCTTaGACACTTCGGTCAACAGATGCCGGTGGGTCCTCCGTACGTGTT +
Preference number: 5 (lower is better)
Translates to: CPPTCATLSALAPPA*TLRSTDAGGSSVRV
Trigger: AACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp TGCATCTCACGCTTGACCCAGCGCTCCAGGTTGGCGATGGTCTCCTaGCAGCGGCAAAGACAGGCCTTGATGGACTTCTTCCAGCGCTGT +
Preference number: 5 (lower is better)
Translates to: CISRLTQRSRLAMVS*QRQRQALMDFFQRC
Trigger: ACAGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CTTGAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCATCTGCAGGATCACATaGGGTTTGGCGGCCGGCCCA +
Preference number: 5 (lower is better)
Translates to: LEISRVSLVPRAYLHTLCICRIT*GLAAGP
Trigger: TGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGAT...GCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GCTGGGGGCCAGGAGGTGCCAGGATGTCAGGTCTGCTGCTTCAGCTGCATTTGTCGGCAAAGACAGGCCTaGATGGACTTCTTCCAGCGC +
Preference number: 5 (lower is better)
Translates to: AGGQEVPGCQVCCFSCICRQRQA*MDFFQR
Trigger: GCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCG...ACAAATGCAGCTGAAGCAGCAGACCTGACATCCTGGCACCTCCTGGCCCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023268.14
CDS-3UTR CAA 90 bp GGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTCTGCCCACTGGGTATTaGCCGCCCATGGACTCCAGG +
Preference number: 5 (lower is better)
Translates to: GAGAGGVVMPFPDMAAKTLPTGY*PPMDSR
Trigger: CCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAG...AGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTCACACCAGGGCTCGGTaGCCCATCCTCACCTGGCCC +
Preference number: 5 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGHTRAR*PILTWP
Trigger: GGGCCAGGTGAGGATGGGCAACCGAGCCCTGGTGTG...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 90 bp TGGTTCTGGATCTGGGACAGCCAATATTCTTCAGAGCCACCCACCTaGCGCAGGTACTCTTCCAGGTGGCTCAGGAACTCCCGTGGGTCC +
Preference number: 5 (lower is better)
Translates to: WFWIWDSQYSSEPPT*RRYSSRWLRNSRGS
Trigger: GGACCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCTGCGGCAGGTGGGTGGCTCTGAAGAATATTGGCTGTCCCAGATCCAGAACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp AGCTCTCGCTCCACCTGCTTGGACACTTCGGTCAACAGATGCCGGTaGGTCCTCCGTACGTGTTCCAGCATCTCAGCTCGGCACTTACCA +
Preference number: 5 (lower is better)
Translates to: SSRSTCLDTSVNRCR*VLRTCSSISARHLP
Trigger: TGGTAAGTGCCGAGCTGAGATGCTGGAACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp AAGGCCATGCAGCGAGCTGGGCTCTGTGCCAAGAGGACCAAGGGTACAGACCCTAACTCCCACCACTTCTaGGCTGGCCCATTCATGTGG +
Preference number: 5 (lower is better)
Translates to: KAMQRAGLCAKRTKGTDPNSHHF*AGPFMW
Trigger: CCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTT...AGGGTCTGTACCCTTGGTCCTCTTGGCACAGAGCCCAGCTCGCTGCATGGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GAGATCTCCAGGGTCTCCCTAGTCCCCAGGGCCTACCTACACACCCTATGCCAGTTCACCGAGCCCTGCTaGAACTCCCACCACTTCTTG +
Preference number: 5 (lower is better)
Translates to: EISRVSLVPRAYLHTLCQFTEPC*NSHHFL
Trigger: CAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAA...CTGGCATAGGGTGTGTAGGTAGGCCCTGGGGACTAGGGAGACCCTGGAGATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp AACCGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAGCTGCTCCAGGGTCTaGGGGAGTGGGTGGCGCAGA +
Preference number: 5 (lower is better)
Translates to: NRNKAYSDCRHKQLPAQGSCSRV*GSGWRR
Trigger: TCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCT...ACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 90 bp TGGTCGAGTGGTTCACCCTGCTTCTGCGGCAGCTCCAGCTCCCGCTaGATGGCTTCACGGGAGAGTGTACCCTCACTGTATTGCAGAAAC +
Preference number: 5 (lower is better)
Translates to: WSSGSPCFCGSSSSR*MASRESVPSLYCRN
Trigger: GTTTCTGCAATACAGTGAGGGTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp CGAGTGGTTCACCCTGCTTCTGCGGCAGCTCCAGCTCCCGCTGAATaGCTTCACGGGAGAGTGTACCCTCACTGTATTGCAGAAACTCCT +
Preference number: 5 (lower is better)
Translates to: RVVHPASAAAPAPAE*LHGRVYPHCIAETP
Trigger: AGGAGTTTCTGCAATACAGTGAGGGTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAGGCACGTGCATCTCACGCTaGACCCAGCGCTCCAGGTTG +
Preference number: 5 (lower is better)
Translates to: QRLLSSLETWCHSPGSVGTCISR*TQRSRL
Trigger: CAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGT...GCCTACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CCTTTCCAGACATGGCAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATCTGCCCACTGGGTATTaGCCGCCCATGGACTCCAGG +
Preference number: 5 (lower is better)
Translates to: PFQTWQQRLLSSLETWCHLPTGY*PPMDSR
Trigger: CCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAG...ATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTGCCATGTCTGGAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGTACAGGTCCCGCTaGCGCCAGAGGAACTGGTCG +
Preference number: 5 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNWYRSR*RQRNWS
Trigger: CGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCA...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 90 bp CAATATTCTTCAGAGCCACCCACCTGCCGCAGGTACTCTTCCAGGTaGCTCAGGAACTCCCGTGGGTCCTCGAAGATCTGTGTATCCACA +
Preference number: 5 (lower is better)
Translates to: QYSSEPPTCRRYSSR*LRNSRGSSKICVST
Trigger: TGTGGATACACAGATCTTCGAGGACCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCTGCGGCAGGTGGGTGGCTCTGAAGAATATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTTCTCAGAACTCCCACCACTTCTaGGCTGGCCCATTCATGTGG +
Preference number: 5 (lower is better)
Translates to: GAGGVVMPFPDMAAKTSQNSHHF*AGPFMW
Trigger: CCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTT...CTGAGAAGTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CAGCAAAGACTTCTCAGCAGCCTTGAGACCTGGTGTCATTCTCCTGGCTCTGTAAGAAAGCGCTTGAGTTaGGGCTGCAGGGTGCCCACC +
Preference number: 5 (lower is better)
Translates to: QQRLLSSLETWCHSPGSVRKRLS*GCRVPT
Trigger: GGTGGGCACCCTGCAGCCCAAACTCAAGCGCTTTCT...TACAGAGCCAGGAGAATGACACCAGGTCTCAAGGCTGCTGAGAAGTCTTTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CGCAACAAGGCCTACTCAGACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGCGCAGAAAGCGCTaGAGTTTGGGCTGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: RNKAYSDCRHKQLPAQGNWRRKR*SLGCRV
Trigger: CACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCA...ATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGTCTGAGTAGGCCTTGTTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CACAGGGTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGCTGCTCCAGGGTCTaGGGGAGTGGGTGGCGCAGA +
Preference number: 5 (lower is better)
Translates to: HRVEDLSEHQWNWSQNTNSCSRV*GSGWRR
Trigger: TCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCT...ATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCACCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp CCTACCTACACACCCTATGCCAGCCAAATGAGTATGGGTCATGGCTTTTGTGCATGGCGCAGAAAGCGCTaGAGTTTGGGCTGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: PTYTPYASQMSMGHGFCAWRRKR*SLGCRV
Trigger: CACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCA...TGCACAAAAGCCATGACCCATACTCATTTGGCTGGCATAGGGTGTGTAGGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAATCTGCAGGATCACATaGGGTTTGGCGGCCGGCCCA +
Preference number: 5 (lower is better)
Translates to: VEDLSEHQWNWSQNTNRPICRIT*GLAAGP
Trigger: TGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGAT...TGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCAGGCTCTCGCTCCACCTGCTaGGACACTTCGGTCAACAGA +
Preference number: 5 (lower is better)
Translates to: EDLSEHQWNWSQNTNRPGSRSTC*DTSVNR
Trigger: TCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGA...GCCTGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp TGGTGCTGGTGCTGGTGGTGTGGTGATGCCCTTTCCAGACATGGCAGCAAAGACTGTACCCTCACTGTATaGCAGAAACTCCTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: WCWCWWCGDALSRHGSKDCTLTV*QKLLLE
Trigger: TTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTACA...GTCTTTGCTGCCATGTCTGGAAAGGGCATCACCACACCACCAGCACCAGCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp GTGGAGGATCTGTCAGAACATCAGTGGAATTGGTCTCAGAACACCAATAGACCATTCACCGAGCCCTGCTaGAACTCCCACCACTTCTTG +
Preference number: 5 (lower is better)
Translates to: VEDLSEHQWNWSQNTNRPFTEPC*NSHHFL
Trigger: CAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAA...TGGTCTATTGGTGTTCTGAGACCAATTCCACTGATGTTCTGACAGATCCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS-3UTR CAA 90 bp ACTGCAGACACAAGCAGCTACCAGCACAAGGTAATTGGAGCTGGGGCTTGGCTGTGTACCCTCACTGTATaGCAGAAACTCCTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: TADTSSYQHKVIGAGAWLCTLTV*QKLLLE
Trigger: TTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTACA...CAGCCAAGCCCCAGCTCCAATTACCTTGTGCTGGTAGCTGCTTGTGTCTGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp GGGCCGGCTCGCTGCCCACTGGGTATTTGCCGCCCATaGACTCCAGGCGGTCAGCCCACCTCTCCAGACGGT +
Preference number: 6 (lower is better)
Translates to: GPARCPLGICRP*TPGGQPTSPDG
Trigger: ACCGTCTGGAGAGGTGGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp ACAGTGTGGCGGGCCGGCTCGCTGCCCACTGGGTATTaGCCGCCCATGGACTCCAGGCGGTCAGCCCACCTC +
Preference number: 6 (lower is better)
Translates to: TVWRAGSLPTGY*PPMDSRRSAHL
Trigger: GAGGTGGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCCGCCACACTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp CCTACAGAGACAGTGTGGCGGGCCGGCTCGCTGCCCACTGGGTATTaGCCGCCCATGGACTCCAGGCGGTCAGCCCACCTCTCCAGACGG +
Preference number: 6 (lower is better)
Translates to: PTETVWRAGSLPTGY*PPMDSRRSAHLSRR
Trigger: CCGTCTGGAGAGGTGGGCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCCGCCACACTGTCTCTGTAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp CCACACCTACAGAGACAGTGTGGCGGGCCGGCTCGCTaGCCACTGGGTATTTGCCGCCCATGGACTCCAGGC +
Preference number: 6 (lower is better)
Translates to: PHLQRQCGGPAR*PLGICRPWTPG
Trigger: GCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCCGCCACACTGTCTCTGTAGGTGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp CTCGGCACTTACCAATCTGCAGGATCACATTGGGTTTaGCGGCCGGCCCACCCCGCGGGGCAGGGTAGGCGT +
Preference number: 6 (lower is better)
Translates to: LGTYQSAGSHWV*RPAHPAGQGRR
Trigger: ACGCCTACCCTGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp TACAGAGACAGTGTGGCGGGCCGGCTCGCTGCCCACTaGGTATTTGCCGCCCATGGACTCCAGGCGGTCAGC +
Preference number: 6 (lower is better)
Translates to: YRDSVAGRLAAH*VFAAHGLQAVS
Trigger: GCTGACCGCCTGGAGTCCATGGGCGGCAAATACCCAGTGGGCAGCGAGCCGGCCCGCCACACTGTCTCTGTA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp TCTCAGCTCGGCACTTACCAATCTGCAGGATCACATTaGGTTTGGCGGCCGGCCCACCCCGCGGGGCAGGGT +
Preference number: 6 (lower is better)
Translates to: SQLGTYQSAGSH*VWRPAHPAGQG
Trigger: ACCCTGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp GTACAGGTCCCGCTTGCGCCAGAGGAACTGGTCGAGTaGTTCACCCTGCTTCTGCGGCAGCTCCAGCTCCCG +
Preference number: 6 (lower is better)
Translates to: VQVPLAPEELVE*FTLLLRQLQLP
Trigger: CGGGAGCTGGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp ATCTCAGCTCGGCACTTACCAATCTGCAGGATCACATaGGGTTTGGCGGCCGGCCCACCCCGCGGGGCAGGG +
Preference number: 6 (lower is better)
Translates to: ISARHLPICRIT*GLAAGPPRGAG
Trigger: CCCTGCCCCGCGGGGTGGGCCGGCCGCCAAACCCAATGTGATCCTGCAGATTGGTAAGTGCCGAGCTGAGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp ATCCTCTGTGGGCAGTGGGGTGCCAGAAGGCTCAGCTaGCTGCTCCAGGCCGTCCTGCACTTCCATACCCCT +
Preference number: 6 (lower is better)
Translates to: ILCGQWGARRLS*LLQAVLHFHTP
Trigger: AGGGGTATGGAAGTGCAGGACGGCCTGGAGCAGGCAGCTGAGCCTTCTGGCACCCCACTGCCCACAGAGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp CACACGTGCATCTCACGCTTGACCCAGCGCTCCAGGTaGGCGATGGTCTCCTGGCAGCGGCAAAGACAGGCC +
Preference number: 6 (lower is better)
Translates to: HTCISRLTQRSR*AMVSWQRQRQA
Trigger: GGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp ACCTCCCTCCACACGTGCATCTCACGCTTGACCCAGCGCTCCAGGTaGGCGATGGTCTCCTGGCAGCGGCAAAGACAGGCCTTGATGGAC +
Preference number: 6 (lower is better)
Translates to: TSLHTCISRLTQRSR*AMVSWQRQRQALMD
Trigger: GTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCGTGAGATGCACGTGTGGAGGGAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 72 bp TGGCGATGGTCTCCTGGCAGCGGCAAAGACAGGCCTTaGTGGACTTCTTCCAGCGCTGTGAGTCGCCGGTGG +
Preference number: 6 (lower is better)
Translates to: WRWSPGSGKDRP*WTSSSAVSRRW
Trigger: CCACCGGCGACTCACAGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp AGTGTCTGGTACAGGTCCCGCTTGCGCCAGAGGAACTaGTCGAGTGGTTCACCCTGCTTCTGCGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: SVWYRSRLRQRN*SSGSPCFCGSS
Trigger: GGAGCTGCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp TCCTCCTCCTCAGCGTCCACATACAGTGTCTGGTACAGGTCCCGCTaGCGCCAGAGGAACTGGTCGAGTGGTTCACCCTGCTTCTGCGGC +
Preference number: 6 (lower is better)
Translates to: SSSSASTYSVWYRSR*RQRNWSSGSPCFCG
Trigger: GCCGCAGAAGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTGAGGAGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp CCGTCCTGCACTTCCATACCCCTCTGGATAAGCTGCTCCAGGGTCTaGGGGAGTGGGTGGCGCAGAAAGCGCTTGAGTTTGGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: PSCTSIPLWISCSRV*GSGWRRKRLSLGCR
Trigger: CCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGTGCAGGACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp CGGTGGGCACGTAGCCGTCCAAGTTGTTCTCCAGCTTaGCCACCGACCTGTGCAACCCTTTCAGCTCTCGCT +
Preference number: 6 (lower is better)
Translates to: RWARSRPSCSPA*PPTCATLSALA
Trigger: AGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCAAGCTGGAGAACAACTTGGACGGCTACGTGCCCACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp AGGCCGTCCTGCACTTCCATACCCCTCTGGATAAGCTaGTCCAGGGTCTTGGGGAGTGGGTGGCGCAGAAAG +
Preference number: 6 (lower is better)
Translates to: RPSCTSIPLWIS*SRVLGSGWRRK
Trigger: CTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGTGCAGGACGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp CGCTTGACCCAGCGCTCCAGGTTGGCGATGGTCTCCTaGCAGCGGCAAAGACAGGCCTTGATGGACTTCTTC +
Preference number: 6 (lower is better)
Translates to: RLTQRSRLAMVS*QRQRQALMDFF
Trigger: GAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAACCTGGAGCGCTGGGTCAAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp TCAGAGCCACCCACCTGCCGCAGGTACTCTTCCAGGTaGCTCAGGAACTCCCGTGGGTCCTCGAAGATCTGT +
Preference number: 6 (lower is better)
Translates to: SEPPTCRRYSSR*LRNSRGSSKIC
Trigger: ACAGATCTTCGAGGACCCACGGGAGTTCCTGAGCCACCTGGAAGAGTACCTGCGGCAGGTGGGTGGCTCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp CTCTGGATAAGCTGCTCCAGGGTCTTGGGGAGTGGGTaGCGCAGAAAGCGCTTGAGTTTGGGCTGCAGGGTG +
Preference number: 6 (lower is better)
Translates to: LWISCSRVLGSG*RRKRLSLGCRV
Trigger: CACCCTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp ACCCCTCTGGATAAGCTGCTCCAGGGTCTTGGGGAGTaGGTGGCGCAGAAAGCGCTTGAGTTTGGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: TPLDKLLQGLGE*VAQKALEFGLQ
Trigger: CTGCAGCCCAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp TTGGCGATGGTCTCCTGGCAGCGGCAAAGACAGGCCTaGATGGACTTCTTCCAGCGCTGTGAGTCGCCGGTG +
Preference number: 6 (lower is better)
Translates to: LAMVSWQRQRQA*MDFFQRCESPV
Trigger: CACCGGCGACTCACAGCGCTGGAAGAAGTCCATCAAGGCCTGTCTTTGCCGCTGCCAGGAGACCATCGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp TTGCCCACCGACCTGTGCAACCCTTTCAGCTCTCGCTCCACCTGCTaGGACACTTCGGTCAACAGATGCCGGTGGGTCCTCCGTACGTGT +
Preference number: 6 (lower is better)
Translates to: LPTDLCNPFSSRSTC*DTSVNRCRWVLRTC
Trigger: ACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp CTCCCGTGGGTCCTCGAAGATCTGTGTATCCACACCAGGGCTCGGTaGCCCATCCTCACCTGGCCCCCAAGACTGATATTGCTGAGCCTC +
Preference number: 6 (lower is better)
Translates to: LPWVLEDLCIHTRAR*PILTWPPRLILLSL
Trigger: GAGGCTCAGCAATATCAGTCTTGGGGGCCAGGTGAGGATGGGCAACCGAGCCCTGGTGTGGATACACAGATCTTCGAGGACCCACGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp CCGTCCAAGTTGTTCTCCAGCTTGCCCACCGACCTGTaGAACCCTTTCAGCTCTCGCTCCACCTGCTTGGAC +
Preference number: 6 (lower is better)
Translates to: PSKLFSSLPTDL*NPFSSRSTCLD
Trigger: GTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTCGGTGGGCAAGCTGGAGAACAACTTGGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp CAGCGTCCACATACAGTGTCTGGTACAGGTCCCGCTTaGGCCAGAGGAACTGGTCGAGTGGTTCACCCTGCT +
Preference number: 6 (lower is better)
Translates to: QRPHTVSGTGPA*ARGTGRVVHPA
Trigger: AGCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp TCCACCTGCTTGGACACTTCGGTCAACAGATGCCGGTaGGTCCTCCGTACGTGTTCCAGCATCTCAGCTCGG +
Preference number: 6 (lower is better)
Translates to: STCLDTSVNRCR*VLRTCSSISAR
Trigger: CCGAGCTGAGATGCTGGAACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp ACCTGTGCAACCCTTTCAGCTCTCGCTCCACCTGCTTaGACACTTCGGTCAACAGATGCCGGTGGGTCCTCC +
Preference number: 6 (lower is better)
Translates to: TCATLSALAPPA*TLRSTDAGGSS
Trigger: GGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp CACCCTGCTTCTGCGGCAGCTCCAGCTCCCGCTGAATaGCTTCACGGGAGAGTGTACCCTCACTGTATTGCA +
Preference number: 6 (lower is better)
Translates to: HPASAAAPAPAE*LHGRVYPHCIA
Trigger: TGCAATACAGTGAGGGTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTGGAGCTGCCGCAGAAGCAGGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp GACCTGTGCAACCCTTTCAGCTCTCGCTCCACCTGCTaGGACACTTCGGTCAACAGATGCCGGTGGGTCCTC +
Preference number: 6 (lower is better)
Translates to: DLCNPFSSRSTC*DTSVNRCRWVL
Trigger: GAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGAGCTGAAAGGGTTGCACAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp TCAGCGTCCACATACAGTGTCTGGTACAGGTCCCGCTaGCGCCAGAGGAACTGGTCGAGTGGTTCACCCTGC +
Preference number: 6 (lower is better)
Translates to: SASTYSVWYRSR*RQRNWSSGSPC
Trigger: GCAGGGTGAACCACTCGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS TCA 72 bp ACCTGGCCCCCAAGACTGATATTGCTGAGCCTCAACTaGCTCCTGTTCAGGCAGTTCTCCTGCGGCAGGTGG +
Preference number: 6 (lower is better)
Translates to: TWPPRLILLSLN*LLFRQFSCGRW
Trigger: CCACCTGCCGCAGGAGAACTGCCTGAACAGGAGTCAGTTGAGGCTCAGCAATATCAGTCTTGGGGGCCAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp TCTCGCTCCACCTGCTTGGACACTTCGGTCAACAGATaGCGGTGGGTCCTCCGTACGTGTTCCAGCATCTCA +
Preference number: 6 (lower is better)
Translates to: SRSTCLDTSVNR*RWVLRTCSSIS
Trigger: TGAGATGCTGGAACACGTACGGAGGACCCACCGGCATCTGTTGACCGAAGTGTCCAAGCAGGTGGAGCGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CCA 72 bp ATGATCTCCTCCTCCTCAGCGTCCACATACAGTGTCTaGTACAGGTCCCGCTTGCGCCAGAGGAACTGGTCG +
Preference number: 6 (lower is better)
Translates to: MISSSSASTYSV*YRSRLRQRNWS
Trigger: CGACCAGTTCCTCTGGCGCAAGCGGGACCTGTACCAGACACTGTATGTGGACGCTGAGGAGGAGGAGATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp GTCCTCGAAGATCTGTGTATCCACACCAGGGCTCGGTaGCCCATCCTCACCTGGCCCCCAAGACTGATATTG +
Preference number: 6 (lower is better)
Translates to: VLEDLCIHTRAR*PILTWPPRLIL
Trigger: CAATATCAGTCTTGGGGGCCAGGTGAGGATGGGCAACCGAGCCCTGGTGTGGATACACAGATCTTCGAGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp ACTTCCATACCCCTCTGGATAAGCTGCTCCAGGGTCTaGGGGAGTGGGTGGCGCAGAAAGCGCTTGAGTTTG +
Preference number: 6 (lower is better)
Translates to: TSIPLWISCSRV*GSGWRRKRLSL
Trigger: CAAACTCAAGCGCTTTCTGCGCCACCCACTCCCCAAGACCCTGGAGCAGCTTATCCAGAGGGGTATGGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS GCA 72 bp TCCTTCTTGAACTCCACCCAGTTCTTCACCGAGCCCTaGTTGAACTCCCACCACTTCTTGGCTGGCCCATTC +
Preference number: 6 (lower is better)
Translates to: SFLNSTQFFTEP*LNSHHFLAGPF
Trigger: GAATGGGCCAGCCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAAGAACTGGGTGGAGTTCAAGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp TTCTTCACCGAGCCCTGCTTGAACTCCCACCACTTCTaGGCTGGCCCATTCATGTGGTTCTGGATCTGGGAC +
Preference number: 6 (lower is better)
Translates to: FFTEPCLNSHHF*AGPFMWFWIWD
Trigger: GTCCCAGATCCAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp TCCACCCAGTTCTTCACCGAGCCCTGCTTGAACTCCCACCACTTCTaGGCTGGCCCATTCATGTGGTTCTGGATCTGGGACAGCCAATAT +
Preference number: 6 (lower is better)
Translates to: STQFFTEPCLNSHHF*AGPFMWFWIWDSQY
Trigger: ATATTGGCTGTCCCAGATCCAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAAGAACTGGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp CAGCTCCCGCTGAATGGCTTCACGGGAGAGTGTACCCTCACTGTATaGCAGAAACTCCTTCTTGAACTCCACCCAGTTCTTCACCGAGCC +
Preference number: 6 (lower is better)
Translates to: QLPLNGFTGECTLTV*QKLLLELHPVLHRA
Trigger: GGCTCGGTGAAGAACTGGGTGGAGTTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTACACTCTCCCGTGAAGCCATTCAGCGGGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 90 bp AGAAACTCCTTCTTGAACTCCACCCAGTTCTTCACCGAGCCCTGCTaGAACTCCCACCACTTCTTGGCTGGCCCATTCATGTGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: RNSFLNSTQFFTEPC*NSHHFLAGPFMWFW
Trigger: CCAGAACCACATGAATGGGCCAGCCAAGAAGTGGTGGGAGTTCAAGCAGGGCTCGGTGAAGAACTGGGTGGAGTTCAAGAAGGAGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4
CDS CAA 72 bp CTGAATGGCTTCACGGGAGAGTGTACCCTCACTGTATaGCAGAAACTCCTTCTTGAACTCCACCCAGTTCTT +
Preference number: 6 (lower is better)
Translates to: LNGFTGECTLTV*QKLLLELHPVL
Trigger: AAGAACTGGGTGGAGTTCAAGAAGGAGTTTCTGCAATACAGTGAGGGTACACTCTCCCGTGAAGCCATTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023268.14
ENSMUST00000110009.4