RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AQP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024411

Ensembl transcript IDs: ENSMUST00000079081.8, ENSMUST00000234053.2, ENSMUST00000234391.2, ENSMUST00000234466.2, ENSMUST00000234473.2, ENSMUST00000234518.2, ENSMUST00000234533.2, ENSMUST00000234643.2, ENSMUST00000235044.2, ENSMUST00000238946.2

Found 295 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCCTCTaGAGATCGAACGGAAGAGGACTCATGATAGTGGCAAATCACAGG +
Preference number: 1 (lower is better)
Translates to: SSCGQQCPSCGGTPL*RSNGRGLMIVANHR
Trigger: CCTGTGATTTGCCACTATCATGAGTCCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTaGGACACCCCTCTGAAGATCGAACGGAAGAGGACTCATGATAGT +
Preference number: 1 (lower is better)
Translates to: IFIREQLWPAVSELW*DTPLKIERKRTHDS
Trigger: ACTATCATGAGTCCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp GAAATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTaGTGGGACACCCCTCTGAAGATCGAACGGAAGAGGACTCATGAT +
Preference number: 1 (lower is better)
Translates to: EIFIREQLWPAVSEL*WDTPLKIERKRTHD
Trigger: ATCATGAGTCCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 90 bp GCCTCAGAACATGACCATGGCACCGAGAGGCATATGCTGCCCTCGTaGCTTTCTGGGAACTCACACATCAGTTTCCTAGCACCGAAGAGA +
Preference number: 1 (lower is better)
Translates to: ASEHDHGTERHMLPS*LSGNSHISFLAPKR
Trigger: TCTCTTCGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATGCCTCTCGGTGCCATGGTCATGTTCTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp CAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGCAGCTGTaGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCCTCTGAAGATC +
Preference number: 1 (lower is better)
Translates to: QRLPTPYEIFIREQL*PAVSELWWDTPLKI
Trigger: GATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp CATTTGAAAGAATCGGCAGAAACCTCCCCTGGGAGGTCTATGCCCTaGTTCTGCGTGATCTGCTCAGAGAGGAAGCTTATGTCTCTGGTG +
Preference number: 1 (lower is better)
Translates to: HLKESAETSPGRSMP*FCVICSERKLMSLV
Trigger: CACCAGAGACATAAGCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCCGATTCTTTCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 90 bp AATCGGCAGAAACCTCCCCTGGGAGGTCTATGCCCTGGTTCTGCGTaGTCTGCTCAGAGAGGAAGCTTATGTCTCTGGTGTAGTATATTC +
Preference number: 1 (lower is better)
Translates to: NRQKPPLGGLCPGSA*SAQRGSLCLWCSIF
Trigger: GAATATACTACACCAGAGACATAAGCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCCGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 90 bp ACCTCTAATATATCAGCCCATTTCCCAGAGACTACCAACTCCTTATaGAATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCT +
Preference number: 1 (lower is better)
Translates to: TSNISAHFPETTNSL*NLHQGAAVASSVRA
Trigger: AGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATATATTAGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp TGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTaGGAGGTCTATGCCCTGGTTCTGCGTGATCTGCTCAGAGAGGAA +
Preference number: 1 (lower is better)
Translates to: WYIVKTFERIGRNLP*EVYALVLRDLLREE
Trigger: TTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 90 bp CTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTTCTGATCTATaGGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCA +
Preference number: 1 (lower is better)
Translates to: LQLSQRQCLCEISDL*GRCQHHTTKARQGP
Trigger: TGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCTCATAGATCAGAAATCTCACAGAGACACTGCCTCTGTGACAATTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 90 bp TGTATGGACCACCTTGAAATTTGTGGTGTGTCTGTGTTCTCCTCCTaGGGGAACAGACAGTTGGCATTGTTTCATGGCTCGTATAAATCT +
Preference number: 1 (lower is better)
Translates to: CMDHLEICGVSVFSS*GNRQLALFHGSYKS
Trigger: AGATTTATACGAGCCATGAAACAATGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGACACACCACAAATTTCAAGGTGGTCCATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 90 bp TTTGAGATGTCAGGGTTCTCAGTGGGGTTAGAGCAGTGCACACATTaGCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAAATTGAC +
Preference number: 1 (lower is better)
Translates to: FEMSGFSVGLEQCTH*LDSPRRNVAVFEID
Trigger: GTCAATTTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTCTAACCCCACTGAGAACCCTGACATCTCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 90 bp ATTCACACAAATGGGTATAATTACACTCACAATGCCGATTGTCGATaGATATCGTGGGAATCAAAACAGCATCAGCAGCTAAGATGGGGC +
Preference number: 1 (lower is better)
Translates to: IHTNGYNYTHNADCR*ISWESKQHQQLRWG
Trigger: GCCCCATCTTAGCTGCTGATGCTGTTTTGATTCCCACGATATGCATCGACAATCGGCATTGTGAGTGTAATTATACCCATTTGTGTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp TTGATATCACCTTCCGAACTGAAGCGCTCTGATCTTAAGTCTGCGTaGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCC +
Preference number: 1 (lower is better)
Translates to: LISPSELKRSDLKSA*YIVKTFERIGRNLP
Trigger: GGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGACTTAAGATCAGAGCGCTTCAGTTCGGAAGGTGATATCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp ATTAGAGCGTCTCATGGCTTTTGTAAGATTGTCTGTTTGGCTCTCTaGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTTCTGAT +
Preference number: 1 (lower is better)
Translates to: IRASHGFCKIVCLAL*LQLSQRQCLCEISD
Trigger: ATCAGAAATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGACAATCTTACAAAAGCCATGAGACGCTCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 90 bp CTAGCACCGAAGAGAATCAGGTTTAATAGTGGTCCATTATCTCGCTaGCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACA +
Preference number: 1 (lower is better)
Translates to: LAPKRIRFNSGPLSR*HRHKTAINNKKSHT
Trigger: TGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAGATAATGGACCACTATTAAACCTGATTCTCTTCGGTGCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp TTGTCTAAGATAAATGCTATGCTAGACTGTTATGATCATAGAAACTaGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGCAGTAT +
Preference number: 1 (lower is better)
Translates to: LSKINAMLDCYDHRN*GFHRAFDGRKAKQY
Trigger: ATACTGCTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATAACAGTCTAGCATAGCATTTATCTTAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 90 bp AAATTTGTGGTGTGTCTGTGTTCTCCTCCTGAGGGAACAGACAGTTaGCATTGTTTCATGGCTCGTATAAATCTTTTATGTCTTCCTGAT +
Preference number: 1 (lower is better)
Translates to: KFVVCLCSPPEGTDS*HCFMARINLLCLPD
Trigger: ATCAGGAAGACATAAAAGATTTATACGAGCCATGAAACAATGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGACACACCACAAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 90 bp ACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGGAATTGTaGTTGGGAGAAGAAAGCCCTCCATTACCAGCTATTTACAAGCTA +
Preference number: 1 (lower is better)
Translates to: TKLPLTIRSHTQLEL*LGEESPPLPAIYKL
Trigger: TAGCTTGTAAATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCGGCAGAAACCTCCCCTaGGAGGTCTATGCCCTGGTT +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTGRNLP*EVYALV
Trigger: AACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCC...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCATATGCTGCCCTCGTaGCTTTCTGGGAACTCACAC +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTHMLPS*LSGNSH
Trigger: GTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp TGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATGACCATGGCACCGAGAGGCCCACAGAGCATTCGATaGGCGGAAGGCAAAGCAGTA +
Preference number: 2 (lower is better)
Translates to: CGPCSQHLPQNMTMAPRGPQSIR*AEGKAV
Trigger: TACTGCTTTGCCTTCCGCCCATCGAATGCTCTGTGG...GCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCAAGACGATGGACAATaGCAGCTTCCTCACAGAGGT +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTQDDGQ*QLPHRG
Trigger: ACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTG...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp TGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATGACCATGGCACCGAGAGGCGGTCCATTATCTCGCTaGCACAGACACAAAACTGCC +
Preference number: 2 (lower is better)
Translates to: CGPCSQHLPQNMTMAPRGGPLSR*HRHKTA
Trigger: GGCAGTTTTGTGTCTGTGGCAGCGAGATAATGGACC...GCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCTGGCAGAGCCGTGAGTaGAATGCAAGACATATTGCA +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTWQSRE*NARHIA
Trigger: TGCAATATGTCTTGCATTTCACTCACGGCTCTGCCA...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp AAGCTATGTGCAGATGGGGTAACTAGGAGCTTTGCACAGAGGCTGTGTGCTCACGTTTCCCTCTCCGTGTaGTGGATGCAAGGCAGTAGC +
Preference number: 2 (lower is better)
Translates to: KLCADGVTRSFAQRLCAHVSLSV*WMQGSS
Trigger: GCTACTGCCTTGCATCCATCACACGGAGAGGGAAAC...GTGAGCACACAGCCTCTGTGCAAAGCTCCTAGTTACCCCATCTGCACATAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATGACCATGGCACCGAGAGGCTTACAAGCTAGTCCTTaGAGAAATGGCTCTTCTCTC +
Preference number: 2 (lower is better)
Translates to: CGPCSQHLPQNMTMAPRGLQASP*RNGSSL
Trigger: GAGAGAAGAGCCATTTCTTCAAGGACTAGCTTGTAA...GCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCAGTTTGTACCATACTaGATGCTGTCACTGGAAATG +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTQFVPY*MLSLEM
Trigger: CATTTCCAGTGACAGCATTCAGTATGGTACAAACTG...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp CCTTATGAAATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTCTCCGTGTGATGGATaGAAGGCAGTAGCACACCTT +
Preference number: 2 (lower is better)
Translates to: PYEIFIREQLWPAVSELWSPCDG*KAVAHL
Trigger: AAGGTGTGCTACTGCCTTGCATCCATCACACGGAGA...CCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTCATAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTGGCAGAAACCTCCCCTaGGAGGTCTATGCCCTGGTT +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIGRNLP*EVYALV
Trigger: AACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCC...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCTGCGTGGTATATTGTaGAAACATTTGAAAGAATCG +
Preference number: 2 (lower is better)
Translates to: IFIREQLWPAVSELWWDTLRGIL*KHLKES
Trigger: CGATTCTTTCAAATGTTTTCACAATATACCACGCAG...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTCATATGCTGCCCTCGTaGCTTTCTGGGAACTCACAC +
Preference number: 2 (lower is better)
Translates to: RKVSTSHNKGQARTNATIHMLPS*LSGNSH
Trigger: GTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTACCGAGAGGCATATGCTaGCCTCGTGCCTTTCTGGGA +
Preference number: 2 (lower is better)
Translates to: KVSTSHNKGQARTNATILPRGIC*PRAFLG
Trigger: TCCCAGAAAGGCACGAGGGCAGCATATGCCTCTCGG...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGTGCCCTGGTTCTGCGTaGTCTGCTCAGAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: YQPISQRLPTPYEIFIRECPGSA*SAQRGS
Trigger: GCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCA...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AGGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTTGTCTGCATATCAAGACGATGGACAATaGCAGCTTCCTCACAGAGGT +
Preference number: 2 (lower is better)
Translates to: RLCAHPFIWQPRCTLSAYQDDGQ*QLPHRG
Trigger: ACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTG...ATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTGTGGGGTTAGAGCAGTaGACACATTGCCTGGATTCT +
Preference number: 2 (lower is better)
Translates to: RKVSTSHNKGQARTNATIVGLEQ*THCLDS
Trigger: AGAATCCAGGCAATGTGTGCACTGCTCTAACCCCAC...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTCCACAGAGCATTCGATaGGCGGAAGGCAAAGCAGTA +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIPQSIR*AEGKAV
Trigger: TACTGCTTTGCCTTCCGCCCATCGAATGCTCTGTGG...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp CATATGCTGCCCTCGTGCCTTTCTGGGAACTCACACATCAGTTTCCTAGCACCGGAAGTCACACACAGTTaGAATTGTGCTTGGGAGAAG +
Preference number: 2 (lower is better)
Translates to: HMLPSCLSGNSHISFLAPEVTHS*NCAWEK
Trigger: CTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTC...CGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTGCCCTCGTGCCTTTCTaGGAACTCACACATCAGTTT +
Preference number: 2 (lower is better)
Translates to: RKVSTSHNKGQARTNATIALVPF*ELTHQF
Trigger: AAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGC...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTTCTCCGTGTGATGGATaGAAGGCAGTAGCACACCTT +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEISPCDG*KAVAHL
Trigger: AAGGTGTGCTACTGCCTTGCATCCATCACACGGAGA...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGTGCACAGAGGCTGTGTaGTCACCCCTTTATTTGGCA +
Preference number: 2 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKCTEAV*SPLYLA
Trigger: TGCCAAATAAAGGGGTGAGCACACAGCCTCTGTGCA...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGTCTGTGTTCTCCTCCTaGGGGAACAGACAGTTGGCA +
Preference number: 2 (lower is better)
Translates to: YQPISQRLPTPYEIFIRESVFSS*GNRQLA
Trigger: TGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGA...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp GAGCAGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAATCTATGCCCTGGTTCTaGGTGATCTGCTCAGAGAGG +
Preference number: 2 (lower is better)
Translates to: EQCTHCLDSPRRNVAVFESMPWF*VICSER
Trigger: CCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGA...TTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTAGTTGGAATTGTGCTTaGGAGAAGAAAGCCCTCCAT +
Preference number: 2 (lower is better)
Translates to: RKVSTSHNKGQARTNATISWNCA*EKKALH
Trigger: ATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACT...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTACAACATGCTTGTTTTaGTTGCCTACTGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEITTCLF*LPTVCL
Trigger: CAGGCACACAGTAGGCAATCAAAACAAGCATGTTGT...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp CTCGCTGCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGCTAGGGAGTCTCTTCTaGCTTCAGTGCTGTCCTCTA +
Preference number: 2 (lower is better)
Translates to: LAATDTKLPLTIRSHTQLLGSLF*LQCCPL
Trigger: TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAG...CAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079081.8
3UTR-3UTR CCA 90 bp AGGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTTGTCTGCATATTGTCGATGCATATCGTaGGAATCAAAACAGCATCAG +
Preference number: 2 (lower is better)
Translates to: RLCAHPFIWQPRCTLSAYCRCIS*ESKQHQ
Trigger: CTGATGCTGTTTTGATTCCCACGATATGCATCGACA...ATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp CTCGCTGCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGGCTCACCCCTTTATTTaGCAACCACGTTGCACCTTG +
Preference number: 2 (lower is better)
Translates to: LAATDTKLPLTIRSHTQLAHPFI*QPRCTL
Trigger: CAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGC...CAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGTATGATCATAGAAACTaGGGTTTCCACAGAGCATTC +
Preference number: 2 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERYDHRN*GFHRAF
Trigger: GAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGGCCCTCGTGCCTTTCTaGGAACTCACACATCAGTTT +
Preference number: 2 (lower is better)
Translates to: YQPISQRLPTPYEIFIREALVPF*ELTHQF
Trigger: AAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGC...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TGTTATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCATCTCCTGAATGCACATaGTTCTGTGACATACTGCAT +
Preference number: 2 (lower is better)
Translates to: CYDHRNWGFHRAFDGRKASPECT*FCDILH
Trigger: ATGCAGTATGTCACAGAATCATGTGCATTCAGGAGA...TGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTAGCAATAGACCCCTGCTaGATCGATGTCATTAGAAAG +
Preference number: 2 (lower is better)
Translates to: KVSTSHNKGQARTNATILAIDPC*IDVIRK
Trigger: CTTTCTAATGACATCGATGCAGCAGGGGTCTATTGC...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGCTGATTTTTCCTCTCTaGTCTCTGTGCGGTGTATCT +
Preference number: 2 (lower is better)
Translates to: YQPISQRLPTPYEIFIRELIFPL*SLCGVS
Trigger: AGATACACCGCACAGAGATCAGAGAGGAAAAATCAG...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp GTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGAATATCCGCAATTTTCTGTGTTCTCCTCCTaGGGGAACAGACAGTTGGCA +
Preference number: 2 (lower is better)
Translates to: VWCVFSGKLCAKSEYPQFSVFSS*GNRQLA
Trigger: TGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGA...AAATTGCGGATATTCACTTTTGGCACATAACTTCCCTGAAAACACACACCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp TGTTATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAGCCAATACACTAGTTaGATAGTTGCTTTGGGGATA +
Preference number: 2 (lower is better)
Translates to: CYDHRNWGFHRAFDGRKASQYTS*IVALGI
Trigger: TATCCCCAAAGCAACTATGCAACTAGTGTATTGGCT...TGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp GCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTaGGAATTGTGCTTGGGAGAAGAAAGCCCTCCATTACCAGCTATT +
Preference number: 2 (lower is better)
Translates to: ATDTKLPLTIRSHTQ*ELCLGEESPPLPAI
Trigger: AATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTATGCACATGATTCTGTaGCATACTGCATTTTGTCAT +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIMHMIL*HTAFCH
Trigger: ATGACAAAATGCAGTATGTCACAGAATCATGTGCAT...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TCTGCGTGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTGGTCTCCTGAATGCACATaGTTCTGTGACATACTGCAT +
Preference number: 2 (lower is better)
Translates to: SAWYIVKTFERIGRNLPWSPECT*FCDILH
Trigger: ATGCAGTATGTCACAGAATCATGTGCATTCAGGAGA...CCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTGTACATTTAAGAGTGTaGACTGAAAACAGACCAATC +
Preference number: 2 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIVHLRV*TENRPI
Trigger: GATTGGTCTGTTTTCAGTGCACACTCTTAAATGTAC...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp GTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGAATATCCGCAATTTTGCACAGAGGCTGTGTaGTCACCCCTTTATTTGGCA +
Preference number: 2 (lower is better)
Translates to: VWCVFSGKLCAKSEYPQFCTEAV*SPLYLA
Trigger: TGCCAAATAAAGGGGTGAGCACACAGCCTCTGTGCA...AAATTGCGGATATTCACTTTTGGCACATAACTTCCCTGAAAACACACACCAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp CACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAAATaGACCTCTAATATATCAGCCCATTTCCCAGAGACTACCAACTCC +
Preference number: 2 (lower is better)
Translates to: HIAWILLGEMLQFLK*TSNISAHFPETTNS
Trigger: GGAGTTGGTAGTCTCTGGGAAATGGGCTGATATATTAGAGGTCAATTTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp AGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTaGAAATTGACCTCTAATATATCAGCCCATTTCCCAGAGACTACC +
Preference number: 2 (lower is better)
Translates to: SAHIAWILLGEMLQF*KLTSNISAHFPETT
Trigger: GGTAGTCTCTGGGAAATGGGCTGATATATTAGAGGTCAATTTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp TCTGCGTGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTGGAGCCAATACACTAGTTaGATAGTTGCTTTGGGGATA +
Preference number: 2 (lower is better)
Translates to: SAWYIVKTFERIGRNLPWSQYTS*IVALGI
Trigger: TATCCCCAAAGCAACTATGCAACTAGTGTATTGGCT...CCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTAGTACATTTAAGAGTGTaGACTGAAAACAGACCAATC +
Preference number: 2 (lower is better)
Translates to: KVSTSHNKGQARTNATILVHLRV*TENRPI
Trigger: GATTGGTCTGTTTTCAGTGCACACTCTTAAATGTAC...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp CAGAGGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTaGTCTGCATATATTTTAATTCACACAAATGGGTATAATTACACT +
Preference number: 2 (lower is better)
Translates to: QRLCAHPFIWQPRCT*SAYILIHTNGYNYT
Trigger: AGTGTAATTATACCCATTTGTGTGAATTAAAATATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp AAACTGCCATTAACAATAAGAAGTCACACACAGTTGGAATTGTGCTaGGGAGAAGAAAGCCCTCCATTACCAGCTATTTACAAGCTAGTC +
Preference number: 2 (lower is better)
Translates to: KLPLTIRSHTQLELC*GEESPPLPAIYKLV
Trigger: GACTAGCTTGTAAATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp GACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGGAATaGTGCTTGGGAGAAGAAAGCCCTCCATTACCAGCTATTTACAAG +
Preference number: 2 (lower is better)
Translates to: DTKLPLTIRSHTQLE*CLGEESPPLPAIYK
Trigger: CTTGTAAATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGCTGCGTGGTATATTGTaGAAACATTTGAAAGAATCG +
Preference number: 2 (lower is better)
Translates to: YQPISQRLPTPYEIFIRELRGIL*KHLKES
Trigger: CGATTCTTTCAAATGTTTTCACAATATACCACGCAG...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTAAAATGCAAGACATATTaGAAAGACGAAGAGTGTGAA +
Preference number: 2 (lower is better)
Translates to: KVSTSHNKGQARTNATILKCKTY*KDEECE
Trigger: TTCACACTCTTCGTCTTTGCAATATGTCTTGCATTT...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CCA 90 bp GAGCAGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAATACATTTCCAGTGTATaGACCACCTTGAAATTTGTG +
Preference number: 2 (lower is better)
Translates to: EQCTHCLDSPRRNVAVFEYISSV*TTLKFV
Trigger: CACAAATTTCAAGGTGGTCCATACACTGGAAATGTA...TTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp GCCATTAACAATAAGAAGTCACACACAGTTGGAATTGTGCTTGGGAGAAGAAAGATGCACATGATTCTGTaGCATACTGCATTTTGTCAT +
Preference number: 2 (lower is better)
Translates to: AINNKKSHTVGIVLGRRKMHMIL*HTAFCH
Trigger: ATGACAAAATGCAGTATGTCACAGAATCATGTGCAT...CTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp CTCTGCCAGCTGCTAGCAAACAAATCACTAAGCTATGATTCCCTGTTTTTCAGTACGTTGCACCTTGTCTaGATATATTTTAATTCACAC +
Preference number: 2 (lower is better)
Translates to: LCQLLANKSLSYDSLFFSTLHLV*IYFNSH
Trigger: GTGTGAATTAAAATATATGCAGACAAGGTGCAACGT...ACTGAAAAACAGGGAATCATAGCTTAGTGATTTGTTTGCTAGCAGCTGGCAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp CTCTGCCAGCTGCTAGCAAACAAATCACTAAGCTATGATTCCCTGTTTTTCAGTACTGAAATCGACATTTaGAGCACATTGTCTAAGATA +
Preference number: 2 (lower is better)
Translates to: LCQLLANKSLSYDSLFFSTEIDI*STLSKI
Trigger: TATCTTAGACAATGTGCTGCAAATGTCGATTTCAGT...ACTGAAAAACAGGGAATCATAGCTTAGTGATTTGTTTGCTAGCAGCTGGCAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR GCA 90 bp GTGTTGTTTAATATTTGTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGAAGGCAATAGACCCCTaGTGCATCGATGTCATTAGA +
Preference number: 2 (lower is better)
Translates to: VLFNICLVCVFREVMCQKKAIDP*CIDVIR
Trigger: TCTAATGACATCGATGCAGCAGGGGTCTATTGCCTT...CTTTTGGCACATAACTTCCCTGAAAACACACACCAAACAAATATTAAACAACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR TCA 90 bp GTGTTGTTTAATATTTGTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGCAGTTTGTACCATACTaGATGCTGTCACTGGAAATG +
Preference number: 2 (lower is better)
Translates to: VLFNICLVCVFREVMCQKQFVPY*MLSLEM
Trigger: CATTTCCAGTGACAGCATTCAGTATGGTACAAACTG...CTTTTGGCACATAACTTCCCTGAAAACACACACCAAACAAATATTAAACAACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 90 bp GCATGTCTTCTCCTGAATGCACATGATTCTGTGACATACTGCATTTaGTCATTTTTAAATCAATCCAATGAAGTCAATAGTCAAGACGAT +
Preference number: 2 (lower is better)
Translates to: ACLLLNAHDSVTYCI*SFLNQSNEVNSQDD
Trigger: ATCGTCTTGACTATTGACTTCATTGGATTGATTTAAAAATGACAAAATGCAGTATGTCACAGAATCATGTGCATTCAGGAGAAGACATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp AGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTaGGACACCCCTCTGAAGATCGAACGGAAGAGGACT +
Preference number: 3 (lower is better)
Translates to: REQLWPAVSELW*DTPLKIERKRT
Trigger: AGTCCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp ATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTaGTGGGACACCCCTCTGAAGATCGAACGGAAGAGG +
Preference number: 3 (lower is better)
Translates to: IREQLWPAVSEL*WDTPLKIERKR
Trigger: CCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp AATGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATaGCCATGGCACCGAGAGGCATATGCTGCCCTCGTG +
Preference number: 3 (lower is better)
Translates to: NVAHAPSICLRT*PWHREAYAALV
Trigger: CACGAGGGCAGCATATGCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp GGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCCTCTaGAGATCGAACGGAAGAGGACTCATGATAGTGGCA +
Preference number: 3 (lower is better)
Translates to: GQQCPSCGGTPL*RSNGRGLMIVA
Trigger: TGCCACTATCATGAGTCCTCTTCCGTTCGATCTTCAGAGGGGTGTCCCACCACAGCTCGGACACTGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp TGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATGACCATGGCACCGAGAGGCCAGTTGGAATTGTGCTaGGGAGAAGAAAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: CGPCSQHLPQNMTMAPRGQLELC*GEESPP
Trigger: TGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTG...GCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp CCAACTCCTTATGAAATCTTCATCAGGGAGCAGCTGTaGCCAGCAGTGTCCGAGCTGTGGTGGGACACCCCT +
Preference number: 3 (lower is better)
Translates to: PTPYEIFIREQL*PAVSELWWDTP
Trigger: AGGGGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTCATAAGGAGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp GCAGAAACCTCCCCTGGGAGGTCTATGCCCTGGTTCTaGGTGATCTGCTCAGAGAGGAAGCTTATGTCTCTG +
Preference number: 3 (lower is better)
Translates to: AETSPGRSMPWF*VICSERKLMSL
Trigger: CAGAGACATAAGCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp TGGCACCGAGAGGCATATGCTGCCCTCGTGCCTTTCTaGGAACTCACACATCAGTTTCCTAGCACCGAAGAG +
Preference number: 3 (lower is better)
Translates to: WHREAYAALVPF*ELTHQFPSTEE
Trigger: CTCTTCGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATGCCTCTCGGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp GAATCGGCAGAAACCTCCCCTGGGAGGTCTATGCCCTaGTTCTGCGTGATCTGCTCAGAGAGGAAGCTTATG +
Preference number: 3 (lower is better)
Translates to: ESAETSPGRSMP*FCVICSERKLM
Trigger: CATAAGCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTTCTGCCGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp AAACCTCCCCTGGGAGGTCTATGCCCTGGTTCTGCGTaGTCTGCTCAGAGAGGAAGCTTATGTCTCTGGTGT +
Preference number: 3 (lower is better)
Translates to: KPPLGGLCPGSA*SAQRGSLCLWC
Trigger: ACACCAGAGACATAAGCTTCCTCTCTGAGCAGATCACGCAGAACCAGGGCATAGACCTCCCAGGGGAGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp CATGACCATGGCACCGAGAGGCATATGCTGCCCTCGTaGCTTTCTGGGAACTCACACATCAGTTTCCTAGCA +
Preference number: 3 (lower is better)
Translates to: HDHGTERHMLPS*LSGNSHISFLA
Trigger: TGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATGCCTCTCGGTGCCATGGTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCAACAACATGCTTGTTTaGATTGCCTACTGTGTGCCT +
Preference number: 3 (lower is better)
Translates to: IFIREQLWPAVSELWWDTNNMLV*IAYCVP
Trigger: AGGCACACAGTAGGCAATCAAAACAAGCATGTTGTT...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCTTTGACCCGACATATTaGTTGATGGTTGATATCACC +
Preference number: 3 (lower is better)
Translates to: IFIREQLWPAVSELWWDTFDPTY*LMVDIT
Trigger: GGTGATATCAACCATCAACAAATATGTCGGGTCAAA...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCGTAAAAATATGCTCTTaGTTTCCAAGTCCATGTTGC +
Preference number: 3 (lower is better)
Translates to: IFIREQLWPAVSELWWDTVKICS*FPSPCC
Trigger: GCAACATGGACTTGGAAACAAAGAGCATATTTTTAC...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp TTCCACCTCCCACCAGACTCCCAAGTCTGGCTGTCCTaGACCTCAATGGGTGTCCCATGTATAGCTTTCATT +
Preference number: 3 (lower is better)
Translates to: FHLPPDSQVWLS*TSMGVPCIAFI
Trigger: AATGAAAGCTATACATGGGACACCCATTGAGGTTCAGGACAGCCAGACTTGGGAGTCTGGTGGGAGGTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTCAGTTGGAATTGTGCTaGGGAGAAGAAAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: RKVSTSHNKGQARTNATIQLELC*GEESPP
Trigger: TGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTG...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp TGGTGTAGTATATTCAAAGCCCTGAAATGTGGCCCATaGTCCCAGCATCTGCCTCAGAACATGACCATGGCA +
Preference number: 3 (lower is better)
Translates to: WCSIFKALKCGP*SQHLPQNMTMA
Trigger: TGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACATTTCAGGGCTTTGAATATACTACACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTCACACACAGTTGGAATaGTGCTTGGGAGAAGAAAGC +
Preference number: 3 (lower is better)
Translates to: RKVSTSHNKGQARTNATIHTQLE*CLGEES
Trigger: GCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTG...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGAGAAGTCACACACAGTaGGAATTGTGCTTGGGAGAA +
Preference number: 3 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERRSHTQ*ELCLGE
Trigger: TTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCT...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp CCTTATGAAATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTCCCTGTTTTTCAGTTaGTACCATACTGAATGCTGT +
Preference number: 3 (lower is better)
Translates to: PYEIFIREQLWPAVSELWSLFFS*YHTECC
Trigger: ACAGCATTCAGTATGGTACAAACTGAAAAACAGGGA...CCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGATTTCATAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp CACCTTGAAATTTGTGGTGTGTCTGTGTTCTCCTCCTaGGGGAACAGACAGTTGGCATTGTTTCATGGCTCG +
Preference number: 3 (lower is better)
Translates to: HLEICGVSVFSS*GNRQLALFHGS
Trigger: CGAGCCATGAAACAATGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGACACACCACAAATTTCAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp CATATGCTGCCCTCGTGCCTTTCTGGGAACTCACACATCAGTTTCCTAGCACCGAGTTGCATAGTTGCTTaGGGGATACATTCAAAAAGA +
Preference number: 3 (lower is better)
Translates to: HMLPSCLSGNSHISFLAPSCIVA*GIHSKR
Trigger: TCTTTTTGAATGTATCCCCAAAGCAACTATGCAACT...CGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp CAATCCAATGAAGTCAATAGTCAAGACGATGGACAATaGCAGCTTCCTCACAGAGGTGTCCATATGCTCTGC +
Preference number: 3 (lower is better)
Translates to: QSNEVNSQDDGQ*QLPHRGVHMLC
Trigger: GCAGAGCATATGGACACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGATTG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp TCAGGGTTCTCAGTGGGGTTAGAGCAGTGCACACATTaGCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTT +
Preference number: 3 (lower is better)
Translates to: SGFSVGLEQCTH*LDSPRRNVAVF
Trigger: AAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTCTAACCCCACTGAGAACCCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp TTTGAGATGTCAGGGTTCTCAGTGGGGTTAGAGCAGTaGACACATTGCCTGGATTCTCCTAGGAGAAATGTT +
Preference number: 3 (lower is better)
Translates to: FEMSGFSVGLEQ*THCLDSPRRNV
Trigger: AACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTCTAACCCCACTGAGAACCCTGACATCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp AATTACACTCACAATGCCGATTGTCGATGCATATCGTaGGAATCAAAACAGCATCAGCAGCTAAGATGGGGC +
Preference number: 3 (lower is better)
Translates to: NYTHNADCRCIS*ESKQHQQLRWG
Trigger: GCCCCATCTTAGCTGCTGATGCTGTTTTGATTCCCACGATATGCATCGACAATCGGCATTGTGAGTGTAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp AGCTTTGCACAGAGGCTGTGTGCTCACCCCTTTATTTaGCAACCACGTTGCACCTTGTCTGCATATATTTTA +
Preference number: 3 (lower is better)
Translates to: SFAQRLCAHPFI*QPRCTLSAYIL
Trigger: TAAAATATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCCTCTGTGCAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp TCTCATGGCTTTTGTAAGATTGTCTGTTTGGCTCTCTaGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAG +
Preference number: 3 (lower is better)
Translates to: SHGFCKIVCLAL*LQLSQRQCLCE
Trigger: CTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGACAATCTTACAAAAGCCATGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTGACATTTGCAGCACATaGTCTAAGATAAATGCTATG +
Preference number: 3 (lower is better)
Translates to: RKVSTSHNKGQARTNATIDICST*SKINAM
Trigger: CATAGCATTTATCTTAGACAATGTGCTGCAAATGTC...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp GACTATGTATGTACATTTCCAGTGTATGGACCACCTTaGAATTTGTGGTGTGTCTGTGTTCTCCTCCTGAGG +
Preference number: 3 (lower is better)
Translates to: DYVCTFPVYGPP*NLWCVCVLLLR
Trigger: CCTCAGGAGGAGAACACAGACACACCACAAATTTCAAGGTGGTCCATACACTGGAAATGTACATACATAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp ATAAATGCTATGCTAGACTGTTATGATCATAGAAACTaGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: INAMLDCYDHRN*GFHRAFDGRKA
Trigger: TGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATAACAGTCTAGCATAGCATTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTCAACCACGTTGCACCTaGTCTGCATATATTTTAATT +
Preference number: 3 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIQPRCT*SAYILI
Trigger: AATTAAAATATATGCAGACAAGGTGCAACGTGGTTG...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTCGATCTCCTAATATGTaGTATAATTTGGTGTCATCC +
Preference number: 3 (lower is better)
Translates to: VCLALWLQLSQRQCLCEIRSPNM*YNLVSS
Trigger: GGATGACACCAAATTATACAACATATTAGGAGATCG...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTACTCCTAGGAGAAATGTaGCAGTTTTTGAAATTGACC +
Preference number: 3 (lower is better)
Translates to: KVSTSHNKGQARTNATILLLGEM*QFLKLT
Trigger: GGTCAATTTCAAAAACTGCAACATTTCTCCTAGGAG...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp GTGTGTCTGTGTTCTCCTCCTGAGGGAACAGACAGTTaGCATTGTTTCATGGCTCGTATAAATCTTTTATGT +
Preference number: 3 (lower is better)
Translates to: VCLCSPPEGTDS*HCFMARINLLC
Trigger: ACATAAAAGATTTATACGAGCCATGAAACAATGCCAACTGTCTGTTCCCTCAGGAGGAGAACACAGACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GAGCAGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAATCCCTGTTTTTCAGTTaGTACCATACTGAATGCTGT +
Preference number: 3 (lower is better)
Translates to: EQCTHCLDSPRRNVAVFESLFFS*YHTECC
Trigger: ACAGCATTCAGTATGGTACAAACTGAAAAACAGGGA...TTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp AATGGGTATAATTACACTCACAATGCCGATTGTCGATaGATATCGTGGGAATCAAAACAGCATCAGCAGCTA +
Preference number: 3 (lower is better)
Translates to: NGYNYTHNADCR*ISWESKQHQQL
Trigger: TAGCTGCTGATGCTGTTTTGATTCCCACGATATGCATCGACAATCGGCATTGTGAGTGTAATTATACCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp CCATTAACAATAAGAAGTCACACACAGTTGGAATTGTaGTTGGGAGAAGAAAGCCCTCCATTACCAGCTATT +
Preference number: 3 (lower is better)
Translates to: PLTIRSHTQLEL*LGEESPPLPAI
Trigger: AATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp AATCCAATGAAGTCAATAGTCAAGACGATGGACAATGCCAGCTTCCTCACAGAGAGTTGCATAGTTGCTTaGGGGATACATTCAAAAAGA +
Preference number: 3 (lower is better)
Translates to: NPMKSIVKTMDNASFLTESCIVA*GIHSKR
Trigger: TCTTTTTGAATGTATCCCCAAAGCAACTATGCAACT...CTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp TATCAGCCCATTTCCCAGAGACTACCAACTCCTTATGAAATCTTCATCAGGGAGCAACCACGTTGCACCTaGTCTGCATATATTTTAATT +
Preference number: 3 (lower is better)
Translates to: YQPISQRLPTPYEIFIREQPRCT*SAYILI
Trigger: AATTAAAATATATGCAGACAAGGTGCAACGTGGTTG...CTCCCTGATGAAGATTTCATAAGGAGTTGGTAGTCTCTGGGAAATGGGCTGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGAATATCCGCAATTTAACAACATGCTTGTTTaGATTGCCTACTGTGTGCCT +
Preference number: 3 (lower is better)
Translates to: VWCVFSGKLCAKSEYPQFNNMLV*IAYCVP
Trigger: AGGCACACAGTAGGCAATCAAAACAAGCATGTTGTT...AAATTGCGGATATTCACTTTTGGCACATAACTTCCCTGAAAACACACACCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGAATATCCGCAATTTTGTAAGATTGTCTGTTaGGCTCTCTGGCTTCAATTG +
Preference number: 3 (lower is better)
Translates to: VWCVFSGKLCAKSEYPQFCKIVC*ALWLQL
Trigger: CAATTGAAGCCAGAGAGCCAAACAGACAATCTTACA...AAATTGCGGATATTCACTTTTGGCACATAACTTCCCTGAAAACACACACCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR TCA 72 bp AGTGAAATGCAAGACATATTGCAAAGACGAAGAGTGTaGAGTAGTCACTCTCTGCCTTCAAACAGTAGAATG +
Preference number: 3 (lower is better)
Translates to: SEMQDILQRRRV*SSHSLPSNSRM
Trigger: CATTCTACTGTTTGAAGGCAGAGAGTGACTACTTCACACTCTTCGTCTTTGCAATATGTCTTGCATTTCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp CACCAACTAAAAGTCAGGACTCGACTAGTCAAGTTCTaGTCTAAAATGTCTCTGCTAGTATTTAGGGATCAA +
Preference number: 3 (lower is better)
Translates to: HQLKVRTRLVKF*SKMSLLVFRDQ
Trigger: TTGATCCCTAAATACTAGCAGAGACATTTTAGACCAGAACTTGACTAGTCGAGTCCTGACTTTTAGTTGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CCA 72 bp TCCTTTGACAGACTATGTATGTACATTTCCAGTGTATaGACCACCTTGAAATTTGTGGTGTGTCTGTGTTCT +
Preference number: 3 (lower is better)
Translates to: SFDRLCMYISSV*TTLKFVVCLCS
Trigger: AGAACACAGACACACCACAAATTTCAAGGTGGTCCATACACTGGAAATGTACATACATAGTCTGTCAAAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp AAGAGAATCAGGTTTAATAGTGGTCCATTATCTCGCTaGCACAGACACAAAACTGCCATTAACAATAAGAAG +
Preference number: 3 (lower is better)
Translates to: KRIRFNSGPLSR*HRHKTAINNKK
Trigger: CTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAGATAATGGACCACTATTAAACCTGATTCTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR-3UTR CAA 90 bp GTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGAATATCCGCAATTTCGATCTCCTAATATGTaGTATAATTTGGTGTCATCC +
Preference number: 3 (lower is better)
Translates to: VWCVFSGKLCAKSEYPQFRSPNM*YNLVSS
Trigger: GGATGACACCAAATTATACAACATATTAGGAGATCG...AAATTGCGGATATTCACTTTTGGCACATAACTTCCCTGAAAACACACACCAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR GCA 72 bp TATTGCAAAGACGAAGAGTGTGAAGTAGTCACTCTCTaGCTTCAAACAGTAGAATGTAAAAATATGCTCTTT +
Preference number: 3 (lower is better)
Translates to: YCKDEECEVVTL*LQTVECKNMLF
Trigger: AAAGAGCATATTTTTACATTCTACTGTTTGAAGGCAGAGAGTGACTACTTCACACTCTTCGTCTTTGCAATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp TGTGGCCCATGCTCCCAGCATCTGCCTCAGAACATGACCATGGCACCGAGAGGCCCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: CGPCSQHLPQNMTMAPRGPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...GCCTCTCGGTGCCATGGTCATGTTCTGAGGCAGATGCTGGGAGCATGGGCCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCCCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGCCCATGGCCAGCGGTaGGGTTTCCATGAACCGTGG +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPAHGQR*GFHEPW
Trigger: CCACGGTTCATGGAAACCTCACCGCTGGCCATGGGC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGCCCATGGCCAGCGGTaGGGTTTCCATGAACCGTGG +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCAHGQR*GFHEPW
Trigger: CCACGGTTCATGGAAACCTCACCGCTGGCCATGGGC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTACCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTGCCCATGGCCAGCGGTaGGGTTTCCATGAACCGTGG +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSAHGQR*GFHEPW
Trigger: CCACGGTTCATGGAAACCTCACCGCTGGCCATGGGC...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTTGTCTGCATATAGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: GCVLTPLFGNHVAPCLHIGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...TATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGGCCCCCAGGCACTGTaGAATGATGTAGAAGACGGA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSGPQAL*NDVEDG
Trigger: TCCGTCTTCTACATCATTGCACAGTGCCTGGGGGCC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCAGCCACCCCAGTTTATaGTGGATCCCACACCGAGCA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSSHPSL*WIPHRA
Trigger: TGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCT...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSTAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp CATATGCTGCCCTCGTGCCTTTCTGGGAACTCACACATCAGTTTCCTAGCACCGTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: HMLPSCLSGNSHISFLAPSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...CGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSGQKFC*DCLPES
Trigger: GCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGGCCCCCAGGCACTGTaGAATGATGTAGAAGACGGA +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPGPQAL*NDVEDG
Trigger: TCCGTCTTCTACATCATTGCACAGTGCCTGGGGGCC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGGCCCCCAGGCACTGTaGAATGATGTAGAAGACGGA +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCGPQAL*NDVEDG
Trigger: TCCGTCTTCTACATCATTGCACAGTGCCTGGGGGCC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTAGCCACCCCAGTTTATaGTGGATCCCACACCGAGCA +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCSHPSL*WIPHRA
Trigger: TGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCT...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTTGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPTAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCTAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCGQKFC*DCLPES
Trigger: GCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTAGGATGCCGGCTCCAATaGTGGCCCCCAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: KVSTSHNKGQARTNATILGCRLQ*WPPGTV
Trigger: CACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCC...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGGCCCATGGCCAGCGGTaGGGTTTCCATGAACCGTGG +
Preference number: 4 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKAHGQR*GFHEPW
Trigger: CCACGGTTCATGGAAACCTCACCGCTGGCCATGGGC...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp CATATGCTGCCCTCGTGCCTTTCTGGGAACTCACACATCAGTTTCCTAGCACCGGGCCCCCAGGCACTGTaGAATGATGTAGAAGACGGA +
Preference number: 4 (lower is better)
Translates to: HMLPSCLSGNSHISFLAPGPQAL*NDVEDG
Trigger: TCCGTCTTCTACATCATTGCACAGTGCCTGGGGGCC...CGGTGCTAGGAAACTGATGTGTGAGTTCCCAGAAAGGCACGAGGGCAGCATATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAGGCCCCCAGGCACTGTaGAATGATGTAGAAGACGGA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLGPQAL*NDVEDG
Trigger: TCCGTCTTCTACATCATTGCACAGTGCCTGGGGGCC...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTACTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAAGCCACCCCAGTTTATaGTGGATCCCACACCGAGCA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLSHPSL*WIPHRA
Trigger: TGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCT...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAGCCACCCCAGTTTATaGTGGATCCCACACCGAGCA +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSSHPSL*WIPHRA
Trigger: TGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCT...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSTAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSGQKFC*DCLPES
Trigger: GCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCC...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLGQKFC*DCLPES
Trigger: GCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCC...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCCACAGCGCCCATGATTaGTCCAACCCAATATATCCA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSHSAHD*SNPIYP
Trigger: TGGATATATTGGGTTGGACCAATCATGGGCGCTGTG...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCSKRSS*IHAGSS
Trigger: ACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGA...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPSKRSS*IHAGSS
Trigger: ACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGA...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp CTCAATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGCCACACTGGGAGGTGTaGCCAGGTAGAGGATGCCGG +
Preference number: 4 (lower is better)
Translates to: LNGCPMYSFHLMELTHGQPHWEV*PGRGCR
Trigger: CCGGCATCCTCTACCTGGTCACACCTCCCAGTGTGG...CTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCACACCAACTGGAAAGTaGTTATTAACTCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSTPTGK*LLTPPG
Trigger: TCCTGGTGGAGTTAATAATCACTTTCCAGTTGGTGT...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGCTAGGGAGTCTCTTCTaGCTTCAGTGCTGTCCTCTA +
Preference number: 4 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERLGSLF*LQCCPL
Trigger: TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAG...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp GTCTGTTTGGCTCTCTGGCTTCAATTGTCACAGAGGCAGTGTCTCTGTGAGATTACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VCLALWLQLSQRQCLCEITAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...AATCTCACAGAGACACTGCCTCTGTGACAATTGAAGCCAGAGAGCCAAACAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSSKRSS*IHAGSS
Trigger: ACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLSKRSS*IHAGSS
Trigger: ACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTACACAGCGCCCATGATTaGTCCAACCCAATATATCCA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLHSAHD*SNPIYP
Trigger: TGGATATATTGGGTTGGACCAATCATGGGCGCTGTG...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCACAGCGCCCATGATTaGTCCAACCCAATATATCCA +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSHSAHD*SNPIYP
Trigger: TGGATATATTGGGTTGGACCAATCATGGGCGCTGTG...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKGQKFC*DCLPES
Trigger: GCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCC...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTACTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: KVSTSHNKGQARTNATILLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp TCCAATGAAGTCAATAGTCAAGACGATGGACAATGCCAGCTTCCTCACAGAGGTCTCCCTTTTGTCTGCTaGGCGGCTTTGCTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SNEVNSQDDGQCQLPHRGLPFVC*AALLKA
Trigger: AGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAG...ACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp TCCAATGAAGTCAATAGTCAAGACGATGGACAATGCCAGCTTCCTCACAGAGGTTGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: SNEVNSQDDGQCQLPHRGWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...ACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp CTCAATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGTCCACCAGGAGCCCATaGCCAGCGGTGAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: LNGCPMYSFHLMELTHGQSTRSP*PAVRFP
Trigger: TGGAAACCTCACCGCTGGCCATGGGCTCCTGGTGGA...CTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp TCTGCGTGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTGGTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: SAWYIVKTFERIGRNLPWSSVST*LRLSST
Trigger: GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGA...CCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp AATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGAAAGCCCATGGCCAGCGGTaGGGTTTCCATGAACCGTGG +
Preference number: 4 (lower is better)
Translates to: NGCPMYSFHLMELTHGQKAHGQR*GFHEPW
Trigger: CCACGGTTCATGGAAACCTCACCGCTGGCCATGGGC...TTTCTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAACACCAACTGGAAAGTaGTTATTAACTCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLTPTGK*LLTPPG
Trigger: TCCTGGTGGAGTTAATAATCACTTTCCAGTTGGTGT...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGGCTCCAGTATAATTaGTTGCAAACAAATGTCCAA +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSWLQYN*LQTNVQ
Trigger: TTGGACATTTGTTTGCAATCAATTATACTGGAGCCA...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTATATATCCAGTGGTTTaGCCAGTTTCCCATGATAAC +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPIYPVV*PVSHDN
Trigger: GTTATCATGGGAAACTGGGCAAACCACTGGATATAT...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTATATATCCAGTGGTTTaGCCAGTTTCCCATGATAAC +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCIYPVV*PVSHDN
Trigger: GTTATCATGGGAAACTGGGCAAACCACTGGATATAT...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CCA 90 bp CTCGCTGCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGAGCCACCCCAGTTTATaGTGGATCCCACACCGAGCA +
Preference number: 4 (lower is better)
Translates to: LAATDTKLPLTIRSHTQLSHPSL*WIPHRA
Trigger: TGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCT...CAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp GAGCAGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTTGAATGGCCACCACTGATGTaGCCAAAGCACTGCACCATG +
Preference number: 4 (lower is better)
Translates to: EQCTHCLDSPRRNVAVFEWPPLM*PKHCTM
Trigger: CATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCA...TTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACTGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp TCCAATGAAGTCAATAGTCAAGACGATGGACAATGCCAGCTTCCTCACAGAGGTTTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: SNEVNSQDDGQCQLPHRGFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...ACCTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp AAGCTATGTGCAGATGGGGTAACTAGGAGCTTTGCACAGAGGCTGTGTGCTCACACACCAACTGGAAAGTaGTTATTAACTCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: KLCADGVTRSFAQRLCAHTPTGK*LLTPPG
Trigger: TCCTGGTGGAGTTAATAATCACTTTCCAGTTGGTGT...GTGAGCACACAGCCTCTGTGCAAAGCTCCTAGTTACCCCATCTGCACATAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: GRKSEARSRESLLPSVLSKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAATATATCCAGTGGTTTaGCCAGTTTCCCATGATAAC +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLIYPVV*PVSHDN
Trigger: GTTATCATGGGAAACTGGGCAAACCACTGGATATAT...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTTTATCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: KVSTSHNKGQARTNATILSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...TAAAATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp CTCTGCCAGCTGCTAGCAAACAAATCACTAAGCTATGATTCCCTGTTTTTCAGTACAGCGGGATTGATGTaGCCACCACTGATGTGGCCA +
Preference number: 4 (lower is better)
Translates to: LCQLLANKSLSYDSLFFSTAGLM*PPLMWP
Trigger: TGGCCACATCAGTGGTGGCCACATCAATCCCGCTGT...ACTGAAAAACAGGGAATCATAGCTTAGTGATTTGTTTGCTAGCAGCTGGCAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp TGTTATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCACACAGCGCCCATGATTaGTCCAACCCAATATATCCA +
Preference number: 4 (lower is better)
Translates to: CYDHRNWGFHRAFDGRKAHSAHD*SNPIYP
Trigger: TGGATATATTGGGTTGGACCAATCATGGGCGCTGTG...TGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGCACAGCGCCCATGATTaGTCCAACCCAATATATCCA +
Preference number: 4 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKHSAHD*SNPIYP
Trigger: TGGATATATTGGGTTGGACCAATCATGGGCGCTGTG...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTATGGCTCCAGTATAATTaGTTGCAAACAAATGTCCAA +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLWLQYN*LQTNVQ
Trigger: TTGGACATTTGTTTGCAATCAATTATACTGGAGCCA...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR TCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTTGGCTCCAGTATAATTaGTTGCAAACAAATGTCCAA +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSWLQYN*LQTNVQ
Trigger: TTGGACATTTGTTTGCAATCAATTATACTGGAGCCA...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp CTCGCTGCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGTCAATGTCAATCACATaGACCACTCCGGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: LAATDTKLPLTIRSHTQLSMSIT*TTPGFR
Trigger: CCTGAAGCCCGGAGTGGTGCATGTGATTGACATTGA...CAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp CTCAATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGTTCGTGTGCACACCATaGCTACAGTCACAGCGGGAT +
Preference number: 4 (lower is better)
Translates to: LNGCPMYSFHLMELTHGQFVCTP*LQSQRD
Trigger: ATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAA...CTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: RKSEARSRESLLPSVLSSKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR GCA 90 bp AATCCAATGAAGTCAATAGTCAAGACGATGGACAATGCCAGCTTCCTCACAGAGGTTTCCCATGATAACTaGGGGTCCAAAAGATCGAGC +
Preference number: 4 (lower is better)
Translates to: NPMKSIVKTMDNASFLTEVSHDN*GSKRSS
Trigger: GCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC...CTCTGTGAGGAAGCTGGCATTGTCCATCGTCTTGACTATTGACTTCATTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTTGTCTGCATATAATATATCCAGTGGTTTaGCCAGTTTCCCATGATAAC +
Preference number: 4 (lower is better)
Translates to: GCVLTPLFGNHVAPCLHIIYPVV*PVSHDN
Trigger: GTTATCATGGGAAACTGGGCAAACCACTGGATATAT...TATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGAAACAAATGTCCAATTaGAACGGAAAATCCAATTGC +
Preference number: 4 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERKQMSN*NGKSNC
Trigger: GCAATTGGATTTTCCGTTGCAATTGGACATTTGTTT...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp TCTGCGTGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTGGACACCAACTGGAAAGTaGTTATTAACTCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: SAWYIVKTFERIGRNLPWTPTGK*LLTPPG
Trigger: TCCTGGTGGAGTTAATAATCACTTTCCAGTTGGTGT...CCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGTGGCTCCAGTATAATTaGTTGCAAACAAATGTCCAA +
Preference number: 4 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKWLQYN*LQTNVQ
Trigger: TTGGACATTTGTTTGCAATCAATTATACTGGAGCCA...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp AGACTATGTATGTACATTTCCAGTGTATGGACCACCTaGAAATTTGTGGTGTGTCTGTGTTCTCCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: RLCMYISSVWTT*KFVVCLCSPPE
Trigger: CTCAGGAGGAGAACACAGACACACCACAAATTTCAAGGTGGTCCATACACTGGAAATGTACATACATAGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CCA 90 bp GTGTTGTTTAATATTTGTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: VLFNICLVCVFREVMCQKSKRSS*IHAGSS
Trigger: ACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGA...CTTTTGGCACATAACTTCCCTGAAAACACACACCAAACAAATATTAAACAACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp CTCACAGAGGTGTCCATATGCTCTGCACGGCAAAACTaGACCAGATCTTGGTTCATAATTTCAGTTATTAAT +
Preference number: 4 (lower is better)
Translates to: LTEVSICSARQN*TRSWFIISVIN
Trigger: ATTAATAACTGAAATTATGAACCAAGATCTGGTCAAGTTTTGCCGTGCAGAGCATATGGACACCTCTGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp TTAACAATAAGAAGTCACACACAGTTGGAATTGTGCTaGGGAGAAGAAAGCCCTCCATTACCAGCTATTTAC +
Preference number: 4 (lower is better)
Translates to: LTIRSHTQLELC*GEESPPLPAIY
Trigger: GTAAATAGCTGGTAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp ACAAAACTGCCATTAACAATAAGAAGTCACACACAGTaGGAATTGTGCTTGGGAGAAGAAAGCCCTCCATTA +
Preference number: 4 (lower is better)
Translates to: TKLPLTIRSHTQ*ELCLGEESPPL
Trigger: TAATGGAGGGCTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp AGTGCACACATTGCCTGGATTCTCCTAGGAGAAATGTaGCAGTTTTTGAAATTGACCTCTAATATATCAGCC +
Preference number: 4 (lower is better)
Translates to: SAHIAWILLGEM*QFLKLTSNISA
Trigger: GGCTGATATATTAGAGGTCAATTTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAATGTGTGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp ATTGCCTGGATTCTCCTAGGAGAAATGTTGCAGTTTTaGAAATTGACCTCTAATATATCAGCCCATTTCCCA +
Preference number: 4 (lower is better)
Translates to: IAWILLGEMLQF*KLTSNISAHFP
Trigger: TGGGAAATGGGCTGATATATTAGAGGTCAATTTCAAAAACTGCAACATTTCTCCTAGGAGAATCCAGGCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR GCA 90 bp GTGTTGTTTAATATTTGTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGATATATCCAGTGGTTTaGCCAGTTTCCCATGATAAC +
Preference number: 4 (lower is better)
Translates to: VLFNICLVCVFREVMCQKIYPVV*PVSHDN
Trigger: GTTATCATGGGAAACTGGGCAAACCACTGGATATAT...CTTTTGGCACATAACTTCCCTGAAAACACACACCAAACAAATATTAAACAACAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR TCA 90 bp GTGTTGTTTAATATTTGTTTGGTGTGTGTTTTCAGGGAAGTTATGTGCCAAAAGTGGCTCCAGTATAATTaGTTGCAAACAAATGTCCAA +
Preference number: 4 (lower is better)
Translates to: VLFNICLVCVFREVMCQKWLQYN*LQTNVQ
Trigger: TTGGACATTTGTTTGCAATCAATTATACTGGAGCCA...CTTTTGGCACATAACTTCCCTGAAAACACACACCAAACAAATATTAAACAACAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp CTGAACCTCAATGGGTGTCCCATGTATAGCTTTCATTaGATGGAACTAACACATGGACAGAAATTAATATTT +
Preference number: 4 (lower is better)
Translates to: LNLNGCPMYSFH*MELTHGQKLIF
Trigger: AAATATTAATTTCTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAGGTTCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp TTGTTAAGTAAATTTATTTTTGACCCGACATATTTGTaGATGGTTGATATCACCTTCCGAACTGAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: LLSKFIFDPTYL*MVDITFRTEAL
Trigger: GAGCGCTTCAGTTCGGAAGGTGATATCAACCATCAACAAATATGTCGGGTCAAAAATAAATTTACTTAACAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
3UTR CAA 72 bp TCCTTGTTAAGTAAATTTATTTTTGACCCGACATATTaGTTGATGGTTGATATCACCTTCCGAACTGAAGCG +
Preference number: 4 (lower is better)
Translates to: SLLSKFIFDPTY*LMVDITFRTEA
Trigger: CGCTTCAGTTCGGAAGGTGATATCAACCATCAACAAATATGTCGGGTCAAAAATAAATTTACTTAACAAGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCGTCTGCTGCGCGGCTTaGCTGAAGGCTTCCTTAAGG +
Preference number: 5 (lower is better)
Translates to: IFIREQLWPAVSELWWDTVCCAA*LKASLR
Trigger: CCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGAC...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp ATCTTCATCAGGGAGCAGCTGTGGCCAGCAGTGTCCGAGCTGTGGTGGGACACCACAGTCACAGCGGGATaGATGTGGCCACCACTGATG +
Preference number: 5 (lower is better)
Translates to: IFIREQLWPAVSELWWDTTVTAG*MWPPLM
Trigger: CATCAGTGGTGGCCACATCAATCCCGCTGTGACTGT...GGTGTCCCACCACAGCTCGGACACTGCTGGCCACAGCTGCTCCCTGATGAAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSVFRLH*APVVLH
Trigger: GTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGAC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGTCTGCTGCGCGGCTTaGCTGAAGGCTTCCTTAAGG +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSVCCAA*LKASLR
Trigger: CCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGAC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCCCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCVFRLH*APVVLH
Trigger: GTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGAC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPVFRLH*APVVLH
Trigger: GTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGAC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCACAGTCACAGCGGGATaGATGTGGCCACCACTGATG +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSTVTAG*MWPPLM
Trigger: CATCAGTGGTGGCCACATCAATCCCGCTGTGACTGT...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGTCTGCTGCGCGGCTTaGCTGAAGGCTTCCTTAAGG +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPVCCAA*LKASLR
Trigger: CCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGAC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTACAGTCACAGCGGGATaGATGTGGCCACCACTGATG +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPTVTAG*MWPPLM
Trigger: CATCAGTGGTGGCCACATCAATCCCGCTGTGACTGT...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTGTCTGCTGCGCGGCTTaGCTGAAGGCTTCCTTAAGG +
Preference number: 5 (lower is better)
Translates to: RKSEARSRESLLPSVLSSVCCAA*LKASLR
Trigger: CCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGAC...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTACCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: RKSEARSRESLLPSVLSSPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp AGGAAGGTGTCAACATCACACAACAAAGGCCAGGCAAGGACCAATGCCACCATTACTTACCCCACCGCCTaGCCGCAGCTCTGTCACTCA +
Preference number: 5 (lower is better)
Translates to: RKVSTSHNKGQARTNATITYPTA*PQLCHS
Trigger: TGAGTGACAGAGCTGCGGCAAGGCGGTGGGGTAAGT...AATGGTGGCATTGGTCCTTGCCTGGCCTTTGTTGTGTGATGTTGACACCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079081.8
CDS-3UTR CAA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAACAGTCACAGCGGGATaGATGTGGCCACCACTGATG +
Preference number: 5 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLTVTAG*MWPPLM
Trigger: CATCAGTGGTGGCCACATCAATCCCGCTGTGACTGT...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp TTCCTCTCTGATCTCTGTGCGGTGTATCTGTCAGTAGCTGTCTCTTGGGAACGGGTCTGCTGCGCGGCTTaGCTGAAGGCTTCCTTAAGG +
Preference number: 5 (lower is better)
Translates to: FLSDLCAVYLSVAVSWERVCCAA*LKASLR
Trigger: CCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGAC...CCGTTCCCAAGAGACAGCTACTGACAGATACACCGCACAGAGATCAGAGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp GGCTGTGTGCTCACCCCTTTATTTGGCAACCACGTTGCACCTTGTCTGCATATAGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: GCVLTPLFGNHVAPCLHIVFRLH*APVVLH
Trigger: GTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGAC...TATATGCAGACAAGGTGCAACGTGGTTGCCAAATAAAGGGGTGAGCACACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS CCA 90 bp ACCATGGCTACAGTCACAGCGGGATTGATGTGGCCACCACTGATGTaGCCAAAGCACTGCACCATGGTAGCAATGCTGAGTCCAAAGCAA +
Preference number: 5 (lower is better)
Translates to: TMATVTAGLMWPPLM*PKHCTMVAMLSPKQ
Trigger: TTGCTTTGGACTCAGCATTGCTACCATGGTGCAGTGCTTTGGCCACATCAGTGGTGGCCACATCAATCCCGCTGTGACTGTAGCCATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp TATGATCATAGAAACTGGGGTTTCCACAGAGCATTCGATGGGCGGAAGGCAAAGGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: YDHRNWGFHRAFDGRKAKVFRLH*APVVLH
Trigger: GTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGAC...CTTTGCCTTCCGCCCATCGAATGCTCTGTGGAAACCCCAGTTTCTATGATCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS GCA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTaGTGTCCTCTAGTCATACGGAAGACAATACCTCTCCCGAAGAGT +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQ*CPLVIRKTIPLPKS
Trigger: ACTCTTCGGGAGAGGTATTGTCTTCCGTATGACTAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238946.2
CDS TCA 90 bp GACAGAAGACATACTCATAAAGGGCACCTGCCAGCACAGCGCCCATaGTTGGTCCAACCCAATATATCCAGTGGTTTGCCCAGTTTCCCA +
Preference number: 5 (lower is better)
Translates to: DRRHTHKGHLPAQRP*LVQPNISSGLPSFP
Trigger: TGGGAAACTGGGCAAACCACTGGATATATTGGGTTGGACCAATCATGGGCGCTGTGCTGGCAGGTGCCCTTTATGAGTATGTCTTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS TCA 90 bp TCCCACACCGAGCAAAACAAAGATAAGCGTGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGCCTGAGTCCAGACTCCTTTGAAAGC +
Preference number: 5 (lower is better)
Translates to: SHTEQNKDKRGQKFC*DCLPESLSPDSFES
Trigger: GCTTTCAAAGGAGTCTGGACTCAGGCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCCACGCTTATCTTTGTTTTGCTCGGTGTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234533.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CCA 90 bp GAAGACATACTCATAAAGGGCACCTGCCAGCACAGCGCCCATGATTaGTCCAACCCAATATATCCAGTGGTTTGCCCAGTTTCCCATGAT +
Preference number: 5 (lower is better)
Translates to: EDILIKGTCQHSAHD*SNPIYPVVCPVSHD
Trigger: ATCATGGGAAACTGGGCAAACCACTGGATATATTGGGTTGGACCAATCATGGGCGCTGTGCTGGCAGGTGCCCTTTATGAGTATGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp GCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: AGNLRPGLGSLFCLQCCPVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...AGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCCAACGGAAAATCCAATaGCTAAAGCTATTGAACCAG +
Preference number: 5 (lower is better)
Translates to: GRKSEARSRESLLPSVLSQRKIQ*LKLLNQ
Trigger: CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTG...GGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTAGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: GNLRPGLGSLFCLQCCPLVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...TAGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp GTGGCAGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCAACGGAAAATCCAATaGCTAAAGCTATTGAACCAG +
Preference number: 5 (lower is better)
Translates to: VAGNLRPGLGSLFCLQCCQRKIQ*LKLLNQ
Trigger: CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTG...ACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCTGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079081.8
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS-3UTR CAA 90 bp CTCAATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGCCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: LNGCPMYSFHLMELTHGQPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...CTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp CTCTGCCAGCTGCTAGCAAACAAATCACTAAGCTATGATTCCCTGTTTTTCAGTCCATGTAGCTCCCTTTaGTCTGCTGCGCGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: LCQLLANKSLSYDSLFFSPCSSL*SAARLC
Trigger: GCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGG...ACTGAAAAACAGGGAATCATAGCTTAGTGATTTGTTTGCTAGCAGCTGGCAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp AGGAAATCTGAGGCCAGGTCTAGGGAGTCTCTTCTGCCTTCAGTGCTGTCCTCTCAACGGAAAATCCAATaGCTAAAGCTATTGAACCAG +
Preference number: 5 (lower is better)
Translates to: RKSEARSRESLLPSVLSSQRKIQ*LKLLNQ
Trigger: CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTG...AGAGGACAGCACTGAAGGCAGAAGAGACTCCCTAGACCTGGCCTCAGATTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000235044.2
CDS CCA 90 bp GTTTGCCCAGTTTCCCATGATAACTGCGGGTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGTATAATTGATTGCAAACAAATGTCC +
Preference number: 5 (lower is better)
Translates to: VCPVSHDNCGSKRSS*IHAGSSIIDCKQMS
Trigger: GGACATTTGTTTGCAATCAATTATACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGACCCGCAGTTATCATGGGAAACTGGGCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp TCTGCGTGGTATATTGTGAAAACATTTGAAAGAATCGGCAGAAACCTCCCCTGGGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: SAWYIVKTFERIGRNLPWVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...CCAGGGGAGGTTTCTGCCGATTCTTTCAAATGTTTTCACAATATACCACGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp CTCGCTGCCACAGACACAAAACTGCCATTAACAATAAGAAGTCACACACAGTTGCAACGGAAAATCCAATaGCTAAAGCTATTGAACCAG +
Preference number: 5 (lower is better)
Translates to: LAATDTKLPLTIRSHTQLQRKIQ*LKLLNQ
Trigger: CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTG...CAACTGTGTGTGACTTCTTATTGTTAATGGCAGTTTTGTGTCTGTGGCAGCGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp GCCATTAACAATAAGAAGTCACACACAGTTGGAATTGTGCTTGGGAGAAGAAAGGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAA +
Preference number: 5 (lower is better)
Translates to: AINNKKSHTVGIVLGRRKVTSVR*ESQLAK
Trigger: TTTTGCCAGCTGTGATTCCAAACGAACTGATGTTAC...CTTTCTTCTCCCAAGCACAATTCCAACTGTGTGTGACTTCTTATTGTTAATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS-3UTR CAA 90 bp CTCAATGGGTGTCCCATGTATAGCTTTCATTTGATGGAACTAACACATGGACAGCAACGGAAAATCCAATaGCTAAAGCTATTGAACCAG +
Preference number: 5 (lower is better)
Translates to: LNGCPMYSFHLMELTHGQQRKIQ*LKLLNQ
Trigger: CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTG...CTGTCCATGTGTTAGTTCCATCAAATGAAAGCTATACATGGGACACCCATTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079081.8
ENSMUST00000238946.2
CDS CAA 72 bp CACTCCGGGCTTCAGGATCAAGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCACCTCCATGTAGCTCCC +
Preference number: 6 (lower is better)
Translates to: HSGLQDQVFRLH*APVVLHLHVAP
Trigger: GGGAGCTACATGGAGGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGACTTGATCCTGAAGCCCGGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CAA 90 bp CACATGCACCACTCCGGGCTTCAGGATCAAGTCTTCCGTCTCCACTaGGCTCCGGTTGTCCTCCACCTCCATGTAGCTCCCTTTTGTCTG +
Preference number: 6 (lower is better)
Translates to: HMHHSGLQDQVFRLH*APVVLHLHVAPFCL
Trigger: CAGACAAAAGGGAGCTACATGGAGGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGACTTGATCCTGAAGCCCGGAGTGGTGCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CCA 72 bp ACTCCGGGCTTCAGGATCAAGTCTTCCGTCTCCACTTaGCTCCGGTTGTCCTCCACAGGTAAGGGGTTTTCT +
Preference number: 6 (lower is better)
Translates to: TPGFRIKSSVST*LRLSSTGKGFS
Trigger: AGAAAACCCCTTACCTGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGACTTGATCCTGAAGCCCGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234533.2
CDS CAA 72 bp TTCAGGATCAAGTCTTCCGTCTCCACTTGGCTCCGGTaGTCCTCCACAGGTAAGGGGTTTTCTGAGCCACCC +
Preference number: 6 (lower is better)
Translates to: FRIKSSVSTWLR*SSTGKGFSEPP
Trigger: GGGTGGCTCAGAAAACCCCTTACCTGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGACTTGATCCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234533.2
CDS TCA 72 bp CATACTCATAAAGGGCACCTGCCAGCACAGCGCCCATaGTTGGTCCAACCCAATATATCCAGTGGTTTGCCC +
Preference number: 6 (lower is better)
Translates to: HTHKGHLPAQRP*LVQPNISSGLP
Trigger: GGGCAAACCACTGGATATATTGGGTTGGACCAATCATGGGCGCTGTGCTGGCAGGTGCCCTTTATGAGTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CCA 72 bp CTCATAAAGGGCACCTGCCAGCACAGCGCCCATGATTaGTCCAACCCAATATATCCAGTGGTTTGCCCAGTT +
Preference number: 6 (lower is better)
Translates to: LIKGTCQHSAHD*SNPIYPVVCPV
Trigger: AACTGGGCAAACCACTGGATATATTGGGTTGGACCAATCATGGGCGCTGTGCTGGCAGGTGCCCTTTATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS TCA 72 bp GAGCAAAACAAAGATAAGCGTGGCCAGAAATTCTGCTaGGACTGCCTTCCAGAAAGCCTGAGTCCAGACTCC +
Preference number: 6 (lower is better)
Translates to: EQNKDKRGQKFC*DCLPESLSPDS
Trigger: GGAGTCTGGACTCAGGCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCCACGCTTATCTTTGTTTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234533.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS GCA 72 bp GCCCATGATTGGTCCAACCCAATATATCCAGTGGTTTaGCCAGTTTCCCATGATAACTGCGGGTCCAAAAGA +
Preference number: 6 (lower is better)
Translates to: AHDWSNPIYPVV*PVSHDNCGSKR
Trigger: TCTTTTGGACCCGCAGTTATCATGGGAAACTGGGCAAACCACTGGATATATTGGGTTGGACCAATCATGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CCA 72 bp GTTTCCCATGATAACTGCGGGTCCAAAAGATCGAGCTaGATTCATGCTGGCTCCAGTATAATTGATTGCAAA +
Preference number: 6 (lower is better)
Translates to: VSHDNCGSKRSS*IHAGSSIIDCK
Trigger: TTTGCAATCAATTATACTGGAGCCAGCATGAATCCAGCTCGATCTTTTGGACCCGCAGTTATCATGGGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CAA 90 bp GAAAATCCAATTGCTAAAGCTATTGAACCAGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAAATAGTGAACACCAACTGGAAAGTG +
Preference number: 6 (lower is better)
Translates to: ENPIAKAIEPVTSVR*ESQLAKIVNTNWKV
Trigger: CACTTTCCAGTTGGTGTTCACTATTTTTGCCAGCTGTGATTCCAAACGAACTGATGTTACTGGTTCAATAGCTTTAGCAATTGGATTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2
CDS CAA 72 bp ATTGCTAAAGCTATTGAACCAGTAACATCAGTTCGTTaGGAATCACAGCTGGCAAAAATAGTGAACACCAAC +
Preference number: 6 (lower is better)
Translates to: IAKAIEPVTSVR*ESQLAKIVNTN
Trigger: GTTGGTGTTCACTATTTTTGCCAGCTGTGATTCCAAACGAACTGATGTTACTGGTTCAATAGCTTTAGCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000079081.8
ENSMUST00000234053.2
ENSMUST00000234391.2
ENSMUST00000234466.2
ENSMUST00000234473.2
ENSMUST00000234518.2
ENSMUST00000234643.2
ENSMUST00000235044.2
ENSMUST00000238946.2