Pregenerated sensors for AQP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028435Ensembl transcript IDs: ENSMUST00000055327.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCCATCTTATTTGCTATCCTACCTTaGCTTAAAGGTGGGTGGGAACCTAATGCCCTAATGGGCAGAGTT | + |
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Preference number: 1 (lower is better) Translates to: LSLSLSLSILFAILP*LKGGWEPNALMGRV Trigger: AACTCTGCCCATTAGGGCATTAGGTTCCCACCCACCTTTAAGCCAAGGTAGGATAGCAAATAAGATGGAGAGAGAGAGAGAGAGAGAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| 3UTR CCA 90 bp | TCTCTCTCCATCTTATTTGCTATCCTACCTTGGCTTAAAGGTGGGTaGGAACCTAATGCCCTAATGGGCAGAGTTCATAGAAATTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: SLSILFAILPWLKGG*EPNALMGRVHRNSG Trigger: TCCAGAATTTCTATGAACTCTGCCCATTAGGGCATTAGGTTCCCACCCACCTTTAAGCCAAGGTAGGATAGCAAATAAGATGGAGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTACACTGGCTTAAAGGTGGGTaGGAACCTAATGCCCTAATG | + |
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Preference number: 2 (lower is better) Translates to: TWSLAFASFSLENSTHVHWLKGG*EPNALM Trigger: CATTAGGGCATTAGGTTCCCACCCACCTTTAAGCCA...GTGTACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTACACTTTGCTATCCTACCTTaGCTTAAAGGTGGGTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: TWSLAFASFSLENSTHVHFAILP*LKGGWE Trigger: TTCCCACCCACCTTTAAGCCAAGGTAGGATAGCAAA...GTGTACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| 3UTR CCA 72 bp | TCTCTCTCTCTCTCCATCTTATTTGCTATCCTACCTTaGCTTAAAGGTGGGTGGGAACCTAATGCCCTAATG | + |
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Preference number: 3 (lower is better) Translates to: SLSLSILFAILP*LKGGWEPNALM Trigger: CATTAGGGCATTAGGTTCCCACCCACCTTTAAGCCAAGGTAGGATAGCAAATAAGATGGAGAGAGAGAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| 3UTR CCA 72 bp | ATCTTATTTGCTATCCTACCTTGGCTTAAAGGTGGGTaGGAACCTAATGCCCTAATGGGCAGAGTTCATAGA | + |
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Preference number: 3 (lower is better) Translates to: ILFAILPWLKGG*EPNALMGRVHR Trigger: TCTATGAACTCTGCCCATTAGGGCATTAGGTTCCCACCCACCTTTAAGCCAAGGTAGGATAGCAAATAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | CCATCCAGCAGGGGTGGACACAGGGAGCGGTTTAGCCCGAGAGAGGCATCACAAGTGAGGAAGCCACCATaGGTGCCACGGCTGAGCACC | + |
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Preference number: 4 (lower is better) Translates to: PSSRGGHRERFSPREASQVRKPP*VPRLST Trigger: GGTGCTCAGCCGTGGCACCCATGGTGGCTTCCTCAC...TTGTGATGCCTCTCTCGGGCTAAACCGCTCCCTGTGTCCACCCCTGCTGGATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | ACTGGTCCCCACACAGTCAGTGGACACTCAGGAGAGTGCACAGTGGGGGAGGGGGGAGTGGGGAGACAATaGGTACCCACCACCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: TGPHTVSGHSGECTVGEGGVGRQ*VPTTSA Trigger: GGCACTGGTGGTGGGTACCCATTGTCTCCCCACTCC...CCCCTCCCCCACTGTGCACTCTCCTGAGTGTCCACTGACTGTGTGGGGACCAGT 62% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | GAGTCCCTGAAGCATGCACACTCTGGCACATTCCTGACTCACTTTCTCCCTTCCCGGCTGAGCACCACCTaGGCCACGGAGCCACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ESLKHAHSGTFLTHFLPSRLSTT*ATEPQP Trigger: TGGCTGTGGCTCCGTGGCTCAGGTGGTGCTCAGCCG...GGAAGGGAGAAAGTGAGTCAGGAATGTGCCAGAGTGTGCATGCTTCAGGGACTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | AGAGTTCATAGAAATTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGAGTCGTGAAGACTTCTaGGCCCCAGCCAGCCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: RVHRNSGGPIQQGWTQGASREDF*APASQG Trigger: GCCCTGGCTGGCTGGGGCTCAGAAGTCTTCACGACT...CGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAATTTCTATGAACTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | TTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGGTTTAGCCCGAGAGGGTGGCAACCAATCATaGGCTGGTACACGAAGACAC | + |
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Preference number: 4 (lower is better) Translates to: FWRAHPAGVDTGSGLAREGGNQS*AGTRRH Trigger: GTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACC...CTCTCGGGCTAAACCGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR GCA 90 bp | GTTCATAGAAATTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGGTTGTGGAGGGTGGGGGCTaGTCCAGGTGGCAACCAATC | + |
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Preference number: 4 (lower is better) Translates to: VHRNSGGPIQQGWTQGAVVEGGG*SRWQPI Trigger: GATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCAC...AACCGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAATTTCTATGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | GTTCATAGAAATTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGGTTGGGGGCTGCTCCAGGTaGCAACCAATCATGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VHRNSGGPIQQGWTQGAVGGCSR*QPIMSW Trigger: CCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCC...AACCGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAATTTCTATGAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | AAGGGTCATAGCTCCAGATGTGAGCTACACCCTTCTTATCCCTTCCCCCTCCCCCCATGGAGGTTCCAATaGCCAGGACCACCAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: KGHSSRCELHPSYPFPLPPWRFQ*PGPPGP Trigger: TGGGCCTGGTGGTCCTGGTCATTGGAACCTCCATGG...GGGGAGGGGGAAGGGATAAGAAGGGTGTAGCTCACATCTGGAGCTATGACCCTT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | GAGTCCCTGAAGCATGCACACTCTGGCACATTCCTGACTCACTTTCTCCCTTCCAGCCAGCCAGGGCGGTaGAGAGGCGAGGTCCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: ESLKHAHSGTFLTHFLPSSQPGR*RGEVQS Trigger: ACTTTGGACCTCGCCTCTTCACCGCCCTGGCTGGCT...GGAAGGGAGAAAGTGAGTCAGGAATGTGCCAGAGTGTGCATGCTTCAGGGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR GCA 90 bp | AAGGGTCATAGCTCCAGATGTGAGCTACACCCTTCTTATCCCTTCCCCCTCCCCGGCCCCCAGTGTCTGTaGCAGTGCATAGATGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: KGHSSRCELHPSYPFPLPGPQCL*QCIDGQ Trigger: CTGCCCATCTATGCACTGGCACAGACACTGGGGGCC...GGGGAGGGGGAAGGGATAAGAAGGGTGTAGCTCACATCTGGAGCTATGACCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR GCA 90 bp | GTTCATAGAAATTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGGTTGATCCAGGGCTCTCGTaGCAGGAAGCACATTGCGAA | + |
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Preference number: 4 (lower is better) Translates to: VHRNSGGPIQQGWTQGAVDPGLS*QEAHCE Trigger: TTCGCAATGTGCTTCCTGGCACGAGAGCCCTGGATC...AACCGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAATTTCTATGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | GAGTCCCTGAAGCATGCACACTCTGGCACATTCCTGACTCACTTTCTCCCTTCCTGGGCACCAGACACCTaGCCAGCCACCAAGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: ESLKHAHSGTFLTHFLPSWAPDT*PATKMP Trigger: TGGCATCTTGGTGGCTGGCCAGGTGTCTGGTGCCCA...GGAAGGGAGAAAGTGAGTCAGGAATGTGCCAGAGTGTGCATGCTTCAGGGACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | AAGGGTCATAGCTCCAGATGTGAGCTACACCCTTCTTATCCCTTCCCCCTCCCCTTCCAGCTGTGCCGTTaGGGCCAGAGACGAAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: KGHSSRCELHPSYPFPLPFQLCR*GQRRKA Trigger: AGCTTTTCGTCTCTGGCCCCAACGGCACAGCTGGAA...GGGGAGGGGGAAGGGATAAGAAGGGTGTAGCTCACATCTGGAGCTATGACCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | GAGTCCCTGAAGCATGCACACTCTGGCACATTCCTGACTCACTTTCTCCCTTCCCGAAGACACCAGCGATaGAACCCAGGAGTGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: ESLKHAHSGTFLTHFLPSRRHQR*NPGVGR Trigger: TCTCCCCACTCCTGGGTTCCATCGCTGGTGTCTTCG...GGAAGGGAGAAAGTGAGTCAGGAATGTGCCAGAGTGTGCATGCTTCAGGGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR GCA 90 bp | AGAGTTCATAGAAATTCTGGAGGGCCCATCCAGCAGGGGTGGACACAGGGAGCGCAGTGTCTGTGCCAGTaGATAGATGGGCAGCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: RVHRNSGGPIQQGWTQGAQCLCQ*IDGQLD Trigger: ATCAAGCTGCCCATCTATGCACTGGCACAGACACTG...CGCTCCCTGTGTCCACCCCTGCTGGATGGGCCCTCCAGAATTTCTATGAACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | AAGGGTCATAGCTCCAGATGTGAGCTACACCCTTCTTATCCCTTCCCCCTCCCCGTCCAGAGGGATAGGTaGCAAAGATTCCAGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: KGHSSRCELHPSYPFPLPVQRDR*QRFQLC Trigger: GCACAGCTGGAATCTTTGCCACCTATCCCTCTGGAC...GGGGAGGGGGAAGGGATAAGAAGGGTGTAGCTCACATCTGGAGCTATGACCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | AAGGGTCATAGCTCCAGATGTGAGCTACACCCTTCTTATCCCTTCCCCCTCCCCGATCAAAGAAGCCATTaGCCATGTCCAAGTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KGHSSRCELHPSYPFPLPDQRSH*PCPSVQ Trigger: CTGGACACTTGGACATGGTCAATGGCTTCTTTGATC...GGGGAGGGGGAAGGGATAAGAAGGGTGTAGCTCACATCTGGAGCTATGACCCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | AAAACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTAAGTGCCGGCCAGTCGTaGAGACTTCTGAGCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KTWSLAFASFSLENSTHVSAGQS*RLLSPS Trigger: GCTGGGGCTCAGAAGTCTTCACGACTGGCCGGCACT...TACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR TCA 90 bp | ACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTACACCGGCATAGCCAGAATTaGAGCCCATGGAGGTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: TWSLAFASFSLENSTHVHRHSQN*SPWRFQ Trigger: TTGGAACCTCCATGGGCTTCAATTCTGGCTATGCCG...GTGTACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CCA 90 bp | AAAACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTACAACCAATCATGAGCTaGTACACGAAGACACCAGCG | + |
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Preference number: 4 (lower is better) Translates to: KTWSLAFASFSLENSTHVQPIMS*YTKTPA Trigger: CGCTGGTGTCTTCGTGTACCAGCTCATGATTGGTTG...TACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS TCA 90 bp | TTGATGGTGAGGAAGCCACCATGGGTGCCACGGCTGAGCACCACCTaGGCCACGGAGCCACAGCCAAACATCACAAGGATGAGGGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LMVRKPPWVPRLSTT*ATEPQPNITRMRVP Trigger: GGGGACCCTCATCCTTGTGATGTTTGGCTGTGGCTCCGTGGCTCAGGTGGTGCTCAGCCGTGGCACCCATGGTGGCTTCCTCACCATCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 90 bp | TCGGTGGAGGGTGGGGGCTGCTCCAGGTGGCAACCAATCATGAGCTaGTACACGAAGACACCAGCGATGGAACCCAGGAGTGGGGAGACA | + |
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Preference number: 5 (lower is better) Translates to: SVEGGGCSRWQPIMS*YTKTPAMEPRSGET Trigger: TGTCTCCCCACTCCTGGGTTCCATCGCTGGTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCACCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 90 bp | CAGCCCAAAAACAATCCCAGCGCCCAAGAAGGCCCCCAGTGTCTGTaGCAGTGCATAGATGGGCAGCTTGATCCAGGGCTCTCGTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: QPKNNPSAQEGPQCL*QCIDGQLDPGLSCQ Trigger: CTGGCACGAGAGCCCTGGATCAAGCTGCCCATCTATGCACTGGCACAGACACTGGGGGCCTTCTTGGGCGCTGGGATTGTTTTTGGGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 90 bp | AAAAACAATCCCAGCGCCCAAGAAGGCCCCCAGTGTCTGTGCCAGTaGATAGATGGGCAGCTTGATCCAGGGCTCTCGTGCCAGGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: KNNPSAQEGPQCLCQ*IDGQLDPGLSCQEA Trigger: TGCTTCCTGGCACGAGAGCCCTGGATCAAGCTGCCCATCTATGCACTGGCACAGACACTGGGGGCCTTCTTGGGCGCTGGGATTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 90 bp | ATGTGGGCCAGCTTCACATTCTCTTCCTCGGTGGAGGGTGGGGGCTaGTCCAGGTGGCAACCAATCATGAGCTGGTACACGAAGACACCA | + |
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Preference number: 5 (lower is better) Translates to: MWASFTFSSSVEGGG*SRWQPIMSWYTKTP Trigger: TGGTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCACCGAGGAAGAGAATGTGAAGCTGGCCCACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 90 bp | AATCATGAGCTGGTACACGAAGACACCAGCGATGGAACCCAGGAGTaGGGAGACAATGGGTACCCACCACCAGTGCCGGCCAGTCGTGAA | + |
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Preference number: 5 (lower is better) Translates to: NHELVHEDTSDGTQE*GDNGYPPPVPASRE Trigger: TTCACGACTGGCCGGCACTGGTGGTGGGTACCCATTGTCTCCCCACTCCTGGGTTCCATCGCTGGTGTCTTCGTGTACCAGCTCATGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CAA 90 bp | ACTGGTCCCCACACAGTCAGTGGACACTCAGGAGAGTGCACAGTGGGGGAGGGGAAGCCAAAAGCCAAGTaGATGGTGAGGAAGCCACCA | + |
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Preference number: 5 (lower is better) Translates to: TGPHTVSGHSGECTVGEGKPKAK*MVRKPP Trigger: TGGTGGCTTCCTCACCATCAACTTGGCTTTTGGCTT...CCCCTCCCCCACTGTGCACTCTCCTGAGTGTCCACTGACTGTGTGGGGACCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 90 bp | AGCTTCACATTCTCTTCCTCGGTGGAGGGTGGGGGCTGCTCCAGGTaGCAACCAATCATGAGCTGGTACACGAAGACACCAGCGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: SFTFSSSVEGGGCSR*QPIMSWYTKTPAME Trigger: TTCCATCGCTGGTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCACCGAGGAAGAGAATGTGAAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 90 bp | GTGTTTCATGTGGGCCAGCTTCACATTCTCTTCCTCGGTGGAGGGTaGGGGCTGCTCCAGGTGGCAACCAATCATGAGCTGGTACACGAA | + |
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Preference number: 5 (lower is better) Translates to: VFHVGQLHILFLGGG*GLLQVATNHELVHE Trigger: TTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCACCGAGGAAGAGAATGTGAAGCTGGCCCACATGAAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 90 bp | CCAAGTGTCCAGAGGGATAGGTGGCAAAGATTCCAGCTGTGCCGTTaGGGCCAGAGACGAAAAGCTCATTGTTGGCAAAGGCCCAGATTG | + |
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Preference number: 5 (lower is better) Translates to: PSVQRDRWQRFQLCR*GQRRKAHCWQRPRL Trigger: CAATCTGGGCCTTTGCCAACAATGAGCTTTTCGTCTCTGGCCCCAACGGCACAGCTGGAATCTTTGCCACCTATCCCTCTGGACACTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS-3UTR CAA 90 bp | AAAACTTGGTCCCTTGCCTTTGCATCATTCAGCTTAGAAAACAGCACACATGTAGTGCCAGGAAGCACATaGCGAAGGTCACAGCGGGGT | + |
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Preference number: 5 (lower is better) Translates to: KTWSLAFASFSLENSTHVVPGST*RRSQRG Trigger: ACCCCGCTGTGACCTTCGCAATGTGCTTCCTGGCAC...TACATGTGTGCTGTTTTCTAAGCTGAATGATGCAAAGGCAAGGGACCAAGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 72 bp | CCCAGCGCCCAAGAAGGCCCCCAGTGTCTGTGCCAGTaGATAGATGGGCAGCTTGATCCAGGGCTCTCGTGC | + |
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Preference number: 6 (lower is better) Translates to: PSAQEGPQCLCQ*IDGQLDPGLSC Trigger: GCACGAGAGCCCTGGATCAAGCTGCCCATCTATGCACTGGCACAGACACTGGGGGCCTTCTTGGGCGCTGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 72 bp | CCCAGGAGTGGGGAGACAATGGGTACCCACCACCAGTaGCGGCCAGTCGTGAAGACTTCTGAGCCCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: PRSGETMGTHHQ*RPVVKTSEPQP Trigger: TGGCTGGGGCTCAGAAGTCTTCACGACTGGCCGGCACTGGTGGTGGGTACCCATTGTCTCCCCACTCCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 72 bp | CTGGTACACGAAGACACCAGCGATGGAACCCAGGAGTaGGGAGACAATGGGTACCCACCACCAGTGCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: LVHEDTSDGTQE*GDNGYPPPVPA Trigger: GGCCGGCACTGGTGGTGGGTACCCATTGTCTCCCCACTCCTGGGTTCCATCGCTGGTGTCTTCGTGTACCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 72 bp | AAGGTCACAGCGGGGTTCAAGTGGGCACCAGACACCTaGCCAGCCACCAAGATGCCAAGGGTGACAGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: KVTAGFKWAPDT*PATKMPRVTAK Trigger: CTTCGCTGTCACCCTTGGCATCTTGGTGGCTGGCCAGGTGTCTGGTGCCCACTTGAACCCCGCTGTGACCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CAA 90 bp | CCAGCCACCAAGATGCCAAGGGTGACAGCGAAGCCAAAAGCCAAGTaGATGGTGAGGAAGCCACCATGGGTGCCACGGCTGAGCACCACC | + |
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Preference number: 6 (lower is better) Translates to: PATKMPRVTAKPKAK*MVRKPPWVPRLSTT Trigger: GGTGGTGCTCAGCCGTGGCACCCATGGTGGCTTCCTCACCATCAACTTGGCTTTTGGCTTCGCTGTCACCCTTGGCATCTTGGTGGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS TCA 72 bp | TGGAGGGTGGGGGCTGCTCCAGGTGGCAACCAATCATaGGCTGGTACACGAAGACACCAGCGATGGAACCCA | + |
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Preference number: 6 (lower is better) Translates to: WRVGAAPGGNQS*AGTRRHQRWNP Trigger: TGGGTTCCATCGCTGGTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACCCTCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS GCA 72 bp | AACAATCCCAGCGCCCAAGAAGGCCCCCAGTGTCTGTaGCAGTGCATAGATGGGCAGCTTGATCCAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: NNPSAQEGPQCL*QCIDGQLDPGL Trigger: GAGCCCTGGATCAAGCTGCCCATCTATGCACTGGCACAGACACTGGGGGCCTTCTTGGGCGCTGGGATTGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 72 bp | GGTGGGGGCTGCTCCAGGTGGCAACCAATCATGAGCTaGTACACGAAGACACCAGCGATGGAACCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: GGGCSRWQPIMS*YTKTPAMEPRS Trigger: ACTCCTGGGTTCCATCGCTGGTGTCTTCGTGTACCAGCTCATGATTGGTTGCCACCTGGAGCAGCCCCCACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CAA 72 bp | AAGATGCCAAGGGTGACAGCGAAGCCAAAAGCCAAGTaGATGGTGAGGAAGCCACCATGGGTGCCACGGCTG | + |
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Preference number: 6 (lower is better) Translates to: KMPRVTAKPKAK*MVRKPPWVPRL Trigger: CAGCCGTGGCACCCATGGTGGCTTCCTCACCATCAACTTGGCTTTTGGCTTCGCTGTCACCCTTGGCATCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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| CDS CCA 72 bp | CTGTGCCGTTGGGGCCAGAGACGAAAAGCTCATTGTTaGCAAAGGCCCAGATTGCATCGTAGTACAGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: LCRWGQRRKAHC*QRPRLHRSTAQ Trigger: TTGGGCTGTACTACGATGCAATCTGGGCCTTTGCCAACAATGAGCTTTTCGTCTCTGGCCCCAACGGCACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055327.8 |
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