Pregenerated sensors for APOOL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025525Ensembl transcript IDs: ENSMUST00000026599.10, ENSMUST00000113415.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCGTCTACCCCCATTGTAAGTTAACTGGCAATAATTGGGAAAACTaGAGCAGACACATACATACATACATACATACGTACATACATACA | + |
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Preference number: 1 (lower is better) Translates to: FVYPHCKLTGNNWEN*SRHIHTYIHTYIHT Trigger: TGTATGTATGTACGTATGTATGTATGTATGTATGTGTCTGCTTCAGTTTTCCCAATTATTGCCAGTTAACTTACAATGGGGGTAGACGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| 3UTR CAA 90 bp | ACATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTaGCAACTTGGTACATCTTGCAGTTCTCTATGCAGGCTCCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: TFCQLPVHYVIFHHC*QLGTSCSSLCRLPL Trigger: CAGAGGGAGCCTGCATAGAGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| 3UTR CAA 90 bp | AGTCACATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATaGTTTGCAACTTGGTACATCTTGCAGTTCTCTATGCAGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: SHILSVTRSLCDFSP*FATWYILQFSMQAP Trigger: GGGAGCCTGCATAGAGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAATGTGACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| 3UTR GCA 72 bp | GTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTaGAGTTCTCTATGCAGGCTCCCTCTGCAAACTAGT | + |
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Preference number: 3 (lower is better) Translates to: VIFHHCLQLGTS*SSLCRLPLQTS Trigger: ACTAGTTTGCAGAGGGAGCCTGCATAGAGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| 3UTR TCA 72 bp | CCCCATTGTAAGTTAACTGGCAATAATTGGGAAAACTaGAGCAGACACATACATACATACATACATACGTAC | + |
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Preference number: 3 (lower is better) Translates to: PHCKLTGNNWEN*SRHIHTYIHTY Trigger: GTACGTATGTATGTATGTATGTATGTGTCTGCTTCAGTTTTCCCAATTATTGCCAGTTAACTTACAATGGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| 3UTR-3UTR CAA 90 bp | ATTCTATTACAAGTCATGAAATGTACTTCTAGCATTTCTACCTCAGTTCCCACAATTTTTCACCATTGTTaGCAACTTGGTACATCTTGC | + |
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Preference number: 3 (lower is better) Translates to: ILLQVMKCTSSISTSVPTIFHHC*QLGTSC Trigger: GCAAGATGTACCAAGTTGCAAACAATGGTGAAAAAT...TGTGGGAACTGAGGTAGAAATGCTAGAAGTACATTTCATGACTTGTAATAGAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| 3UTR TCA 72 bp | TTCAAGTCACATTTTGTCAGTTACCCGTTCATTATGTaGTTTTTCACCATTGTTTGCAACTTGGTACATCTT | + |
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Preference number: 3 (lower is better) Translates to: FKSHFVSYPFIM*FFTIVCNLVHL Trigger: AAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAATGTGACTTGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR TCA 90 bp | CAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTGTATATATGGGGAGCTaGTCCGGTCTCACTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QLPVHYVIFHHCLQLGTSVYMGS*SGLTSC Trigger: GCAGCTAGTGAGACCGGATCAGCTCCCCATATATAC...AGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR TCA 90 bp | TGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACAGGAACCTTTTCTTGCTaGAAGCAAACCTGCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: CQLPVHYVIFHHCLQLGTGTFSC*KQTCQS Trigger: GGACTGGCAGGTTTGCTTTCAGCAAGAAAAGGTTCC...TGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR GCA 90 bp | TGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACAAGAATGGAGGGGTGGTaGAGTATATATGGGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: CQLPVHYVIFHHCLQLGTRMEGW*SIYGEP Trigger: AGGCTCCCCATATATACTGCACCACCCCTCCATTCT...TGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113415.2 |
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| CDS-3UTR CCA 90 bp | TTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACGTGGTGCAGTATATATaGGGAGCTGATCCGGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSVTRSLCDFSPLFATWYVVQYI*GADPVS Trigger: TGAGACCGGATCAGCTCCCCATATATACTGCACCAC...GTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR TCA 90 bp | ATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGGGAACCTTTTCTTGCTaGAAGCAAACCTGCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: ILSVTRSLCDFSPLFATWGTFSC*KQTCQS Trigger: GGACTGGCAGGTTTGCTTTCAGCAAGAAAAGGTTCC...CCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR GCA 90 bp | ATTCTATTACAAGTCATGAAATGTACTTCTAGCATTTCTACCTCAGTTCCCACAAGAATGGAGGGGTGGTaGAGTATATATGGGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: ILLQVMKCTSSISTSVPTRMEGW*SIYGEL Trigger: CAGCTCCCCATATATACTGCACCACCCCTCCATTCT...TGTGGGAACTGAGGTAGAAATGCTAGAAGTACATTTCATGACTTGTAATAGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CCA 90 bp | TTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACTCAGGCAAGCTGGCATaGATTTCATCAGACCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LSVTRSLCDFSPLFATWYSGKLA*ISSDLP Trigger: AGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGA...GTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR CCA 90 bp | GTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGCAGTTCTTCAGACCTGCAGGTATaGTTGTCAACTTTCCCATCC | + |
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Preference number: 4 (lower is better) Translates to: VHYVIFHHCLQLGTSCSSSDLQV*LSTFPS Trigger: GGATGGGAAAGTTGACAACCATACCTGCAGGTCTGA...AGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CCA 90 bp | GTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGCAGTTCTTCAGGCAAGCTGGCATaGATTTCATCAGACCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VHYVIFHHCLQLGTSCSSSGKLA*ISSDLP Trigger: AGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGA...AGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR GCA 90 bp | ATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGCAGACCTTCCTTCCTTaGTTTCTTCCTTTGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: ILSVTRSLCDFSPLFATWQTFLP*FLPLVQ Trigger: CTGAACCAAAGGAAGAAAGCAAGGAAGGAAGGTCTG...CCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR GCA 90 bp | ATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTGCATATATCAGACCTaGAGGTATGGTTGTCAACTT | + |
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Preference number: 4 (lower is better) Translates to: ILSVTRSLCDFSPLFATWCIYQT*RYGCQL Trigger: AAGTTGACAACCATACCTGCAGGTCTGATATATGCA...CCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR GCA 90 bp | TGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACAAGAGATAAATGCTCTTaGACCAGCCAATATAATACA | + |
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Preference number: 4 (lower is better) Translates to: CQLPVHYVIFHHCLQLGTRDKCS*TSQYNT Trigger: TGTATTATATTGGCTGGTGCAAGAGCATTTATCTCT...TGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR GCA 90 bp | GTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGCAGTTCTAGAGATAAATGCTCTTaGACCAGCCAATATAATACA | + |
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Preference number: 4 (lower is better) Translates to: VHYVIFHHCLQLGTSCSSRDKCS*TSQYNT Trigger: TGTATTATATTGGCTGGTGCAAGAGCATTTATCTCT...AGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR GCA 90 bp | ATTCTATTACAAGTCATGAAATGTACTTCTAGCATTTCTACCTCAGTTCCCACACTTCAGATAGACATATaGATCTTTTCCAAACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: ILLQVMKCTSSISTSVPTLQIDI*IFSKLY Trigger: GTACAGTTTGGAAAAGATGCATATGTCTATCTGAAG...TGTGGGAACTGAGGTAGAAATGCTAGAAGTACATTTCATGACTTGTAATAGAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS CCA 90 bp | TCTTTTGGCAAAGACACTGAATGTTTCAGGTCAGGCAAGCTGGCATaGATTTCATCAGACCTTCCTTCCTTGCTTTCTTCCTTTGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: SFGKDTECFRSGKLA*ISSDLPSLLSSFGS Trigger: TGAACCAAAGGAAGAAAGCAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGACCTGAAACATTCAGTGTCTTTGCCAAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS CCA 90 bp | CAAGTTCTTTTGGCAAAGACACTGAATGTTTCAGGTCAGGCAAGCTaGCATGGATTTCATCAGACCTTCCTTCCTTGCTTTCTTCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: QVLLAKTLNVSGQAS*HGFHQTFLPCFLPL Trigger: CAAAGGAAGAAAGCAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGACCTGAAACATTCAGTGTCTTTGCCAAAAGAACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CAA 90 bp | TTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACACCTGGAACCTTTTCTaGCTGAAAGCAAACCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: LSVTRSLCDFSPLFATWYTWNLF*LKANLP Trigger: TGGCAGGTTTGCTTTCAGCAAGAAAAGGTTCCAGGT...GTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR CAA 90 bp | TGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACAGTAATCACTCCCATTTaGGGGAGAAAATCTTGCGGA | + |
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Preference number: 5 (lower is better) Translates to: CQLPVHYVIFHHCLQLGTVITPI*GRKSCG Trigger: TCCGCAAGATTTTCTCCCCAAAATGGGAGTGATTAC...TGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR CAA 90 bp | GTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGCAGTTCTACCTGGAACCTTTTCTaGCTGAAAGCAAACCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: VHYVIFHHCLQLGTSCSSTWNLF*LKANLP Trigger: TGGCAGGTTTGCTTTCAGCAAGAAAAGGTTCCAGGT...AGAACTGCAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR CAA 90 bp | ATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGCCTTGCTTTCTTCCTTaGGTTCAGGGAGTGATTCGT | + |
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Preference number: 5 (lower is better) Translates to: ILSVTRSLCDFSPLFATWPCFLP*VQGVIR Trigger: ACGAATCACTCCCTGAACCAAAGGAAGAAAGCAAGG...CCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CAA 90 bp | TCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGGGTTCCTCTTCTTaGGCAAGACGCACATTTATA | + |
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Preference number: 5 (lower is better) Translates to: SVTRSLCDFSPLFATWYILGSSS*ARRTFI Trigger: TATAAATGTGCGTCTTGCCAAAGAAGAGGAACCCAA...GATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CAA 90 bp | TCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCCAGAGGCAAGTTCTTTaGGCAAAGACACTGAATGTT | + |
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Preference number: 5 (lower is better) Translates to: SVTRSLCDFSPLFATWYIQRQVL*AKTLNV Trigger: AACATTCAGTGTCTTTGCCAAAAGAACTTGCCTCTG...GATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS-3UTR CAA 90 bp | GTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACATCTTGCAGACCTTCCTTCCTTaGCAATTATTACTGACTGAG | + |
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Preference number: 5 (lower is better) Translates to: VTRSLCDFSPLFATWYILQTFLP*QLLLTE Trigger: CTCAGTCAGTAATAATTGCAAAGGAAGGAAGGTCTG...CAAGATGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113415.2 |
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| CDS-3UTR CAA 90 bp | TGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGTACAAATGGCTTGAAAAATTaGCTGGCTTGTAGCATATGC | + |
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Preference number: 5 (lower is better) Translates to: CQLPVHYVIFHHCLQLGTNGLKN*LACSIC Trigger: GCATATGCTACAAGCCAGCAAATTTTTCAAGCCATT...TGTACCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS-3UTR CAA 90 bp | ATTTTGTCAGTTACCCGTTCATTATGTGATTTTTCACCATTGTTTGCAACTTGGCAGAGGCAAGTTCTTTaGGCAAAGACACTGAATGTT | + |
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Preference number: 5 (lower is better) Translates to: ILSVTRSLCDFSPLFATWQRQVL*AKTLNV Trigger: AACATTCAGTGTCTTTGCCAAAAGAACTTGCCTCTG...CCAAGTTGCAAACAATGGTGAAAAATCACATAATGAACGGGTAACTGACAAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS TCA 72 bp | CACTGTTGCAGAGGCAAGTTCTTTTGGCAAAGACACTaGATGTTTCAGGTCAGGCAAGCTGGCATGGATTTC | + |
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Preference number: 6 (lower is better) Translates to: HCCRGKFFWQRH*MFQVRQAGMDF Trigger: GAAATCCATGCCAGCTTGCCTGACCTGAAACATTCAGTGTCTTTGCCAAAAGAACTTGCCTCTGCAACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026599.10 ENSMUST00000113415.2 |
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| CDS CCA 72 bp | TTGGCAAAGACACTGAATGTTTCAGGTCAGGCAAGCTaGCATGGATTTCATCAGACCTTCCTTCCTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LAKTLNVSGQAS*HGFHQTFLPCF Trigger: AAAGCAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGACCTGAAACATTCAGTGTCTTTGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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| CDS CCA 72 bp | TTGGCAAAGACACTGAATGTTTCAGGTCAGGCAAGCTaGCATGGATTTCATCAGACCTTCCTTCCTTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: LAKTLNVSGQAS*HGFHQTFLPLQ Trigger: TTGCAAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGACCTGAAACATTCAGTGTCTTTGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113415.2 |
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| CDS CAA 90 bp | TTCAGGTCAGGCAAGCTGGCATGGATTTCATCAGACCTTCCTTCCTaGCTTTCTTCCTTTGGTTCAGGGAGTGATTCGTTTTCACTTTTT | + |
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Preference number: 6 (lower is better) Translates to: FRSGKLAWISSDLPS*LSSFGSGSDSFSLF Trigger: AAAAAGTGAAAACGAATCACTCCCTGAACCAAAGGAAGAAAGCAAGGAAGGAAGGTCTGATGAAATCCATGCCAGCTTGCCTGACCTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026599.10 |
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