Pregenerated sensors for APOO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079508Ensembl transcript IDs: ENSMUST00000113895.2, ENSMUST00000113896.8, ENSMUST00000113897.9
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATCACCCAATGTTTACCTATAACTaGTTGAAATGGGCAGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LFPCERLQISWPVIWHHPMFTYN*LKWAEH Trigger: ATGCTCTGCCCATTTCAATCAGTTATAGGTAAACAT...TGGGTGATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| 3UTR-3UTR TCA 90 bp | GAGCAAAAAGGCTTAGTGTTGTTTTTCCTGAAGAAAGCCAGTTTACTATATCCAATGTTTACCTATAACTaGTTGAAATGGGCAGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: EQKGLVLFFLKKASLLYPMFTYN*LKWAEH Trigger: ATGCTCTGCCCATTTCAATCAGTTATAGGTAAACAT...TGGATATAGTAAACTGGCTTTCTTCAGGAAAAACAACACTAAGCCTTTTTGCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| 3UTR-3UTR TCA 90 bp | TGTACATTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATATGTTTACCTATAACTaGTTGAAATGGGCAGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: CTLFPCERLQISWPVIWHMFTYN*LKWAEH Trigger: ATGCTCTGCCCATTTCAATCAGTTATAGGTAAACAT...ATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAATGTACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR TCA 90 bp | TTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATCACCCAGGCCCCACAGATCTCTaGATTACCCTGCAGCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LFPCERLQISWPVIWHHPGPTDL*ITLQRP Trigger: TGGGCGCTGCAGGGTAATTCAGAGATCTGTGGGGCC...TGGGTGATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113897.9 |
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| CDS-3UTR CCA 90 bp | TGTACATTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATTGCAGCGCCCAGACCTaGCTTCATCCTCCCCACAAC | + |
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Preference number: 4 (lower is better) Translates to: CTLFPCERLQISWPVIWHCSAQT*LHPPHN Trigger: GTTGTGGGGAGGATGAAGCCAGGTCTGGGCGCTGCA...ATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAATGTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113897.9 |
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| CDS-3UTR GCA 90 bp | TTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATCACCCAGTCCTTTTTGGGTGCTaGATAGACTCTGAAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: LFPCERLQISWPVIWHHPVLFGC*IDSEGE Trigger: CTCACCTTCAGAGTCTATGCAGCACCCAAAAAGGAC...TGGGTGATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113897.9 |
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| CDS-3UTR TCA 90 bp | CAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAGTGATGATGTCGGAGTTGTaGGATGTTTTCTTCAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: QISWPVIWHHPKEQKGLVMMSEL*DVFFKL Trigger: CAACTTGAAGAAAACATCTCACAACTCCGACATCAT...CACTAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR TCA 90 bp | TTGCAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAATGATGTCGGAGTTGTaGGATGTTTTCTTCAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: LQISWPVIWHHPKEQKGLMMSEL*DVFFKL Trigger: CAACTTGAAGAAAACATCTCACAACTCCGACATCAT...TAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | CAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAGTGGATGTTTTCTTCAAGTaGAGTCCTTGGCTCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: QISWPVIWHHPKEQKGLVDVFFK*SPWLLH Trigger: GTGGAGGAGCCAAGGACTCAACTTGAAGAAAACATC...CACTAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | CAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAGTGAATGGTGATGGCTTGTaGTGGGTAATAGACAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: QISWPVIWHHPKEQKGLVNGDGL*WVIDRG Trigger: GCCTCTGTCTATTACCCACAACAAGCCATCACCATT...CACTAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | TTGCAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAAATGGTGATGGCTTGTaGTGGGTAATAGACAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: LQISWPVIWHHPKEQKGLNGDGL*WVIDRG Trigger: GCCTCTGTCTATTACCCACAACAAGCCATCACCATT...TAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | CAGATTAGTTGGCCTGTAATATGGCATCACCCAAAAGAGCAAAAAGGCTTAGTGTCCAGGAGGCGCATTTaGAAGATAGTTATAGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: QISWPVIWHHPKEQKGLVSRRRI*KIVIVV Trigger: GACAACTATAACTATCTTCAAAATGCGCCTCCTGGA...CACTAAGCCTTTTTGCTCTTTTGGGTGATGCCATATTACAGGCCAACTAATCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | GAGCAAAAAGGCTTAGTGTTGTTTTTCCTGAAGAAAGCCAGTTTACTATATCCAGATGTTTTCTTCAAGTaGAGTCCTTGGCTCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: EQKGLVLFFLKKASLLYPDVFFK*SPWLLH Trigger: GTGGAGGAGCCAAGGACTCAACTTGAAGAAAACATC...TGGATATAGTAAACTGGCTTTCTTCAGGAAAAACAACACTAAGCCTTTTTGCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | TGTACATTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATGATGTTTTCTTCAAGTaGAGTCCTTGGCTCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: CTLFPCERLQISWPVIWHDVFFK*SPWLLH Trigger: GTGGAGGAGCCAAGGACTCAACTTGAAGAAAACATC...ATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAATGTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | TTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATCACCCATCCAGGAGGCGCATTTaGAAGATAGTTATAGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: LFPCERLQISWPVIWHHPSRRRI*KIVIVV Trigger: GACAACTATAACTATCTTCAAAATGCGCCTCCTGGA...TGGGTGATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | TTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATCACCCATTTCCTGACAGAAACTaGTATATGGCTCACAATGAT | + |
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Preference number: 5 (lower is better) Translates to: LFPCERLQISWPVIWHHPFPDRN*YMAHND Trigger: ATCATTGTGAGCCATATACAAGTTTCTGTCAGGAAA...TGGGTGATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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| CDS-3UTR CAA 90 bp | TGTACATTATTTCCATGTGAAAGATTGCAGATTAGTTGGCCTGTAATATGGCATTTTCCTGACAGAAACTaGTATATGGCTCACAATGAT | + |
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Preference number: 5 (lower is better) Translates to: CTLFPCERLQISWPVIWHFPDRN*YMAHND Trigger: ATCATTGTGAGCCATATACAAGTTTCTGTCAGGAAA...ATGCCATATTACAGGCCAACTAATCTGCAATCTTTCACATGGAAATAATGTACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113895.2 ENSMUST00000113896.8 ENSMUST00000113897.9 |
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