Pregenerated sensors for APON (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051716Ensembl transcript IDs: ENSMUST00000060782.5, ENSMUST00000218722.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTaGTGCACACCTTTAATCTCAGCAGGTGGAGGCAAAGGCAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: TKQDNLKIPEQIQTW*CTPLISAGGGKGRW Trigger: CCACCTGCCTTTGCCTCCACCTGCTGAGATTAAAGGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTGGTGCACACCCCTACTAAAGGGCTATaGGAAAGTTCATTCCATGCC | + |
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Preference number: 2 (lower is better) Translates to: KARQSQNTRTNTDMVVHTPTKGL*ESSFHA Trigger: GGCATGGAATGAACTTTCTCATAGCCCTTTAGTAGG...GGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTGGTGCACACCTATCCCAAAACAATATaGATACAACCAAGGCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: KARQSQNTRTNTDMVVHTYPKTI*IQPRPR Trigger: TCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATA...GGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| 3UTR-3UTR GCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTATATGAATTTGTAAAATaGAGCCAGCGTCTAGCTACA | + |
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Preference number: 2 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLYEFVK*SQRLAT Trigger: TGTAGCTAGACGCTGGCTGCATTTTACAAATTCATA...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| 3UTR GCA 72 bp | AATCTCAAAATACCAGAACAAATACAGACATGGTGGTaGACACCTTTAATCTCAGCAGGTGGAGGCAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: NLKIPEQIQTWW*TPLISAGGGKG Trigger: GCCTTTGCCTCCACCTGCTGAGATTAAAGGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| 3UTR CCA 72 bp | GACAATCTCAAAATACCAGAACAAATACAGACATGGTaGTGCACACCTTTAATCTCAGCAGGTGGAGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: DNLKIPEQIQTW*CTPLISAGGGK Trigger: TTTGCCTCCACCTGCTGAGATTAAAGGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| 3UTR TCA 72 bp | AAGAGGGAAATTGCAATACCCATAGCATTTAGAAACTaGAAGACTGAAGTCATATCAAGTGTCTTCACACAT | + |
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Preference number: 3 (lower is better) Translates to: KREIAIPIAFRN*KTEVISSVFTH Trigger: ATGTGTGAAGACACTTGATATGACTTCAGTCTTTCAGTTTCTAAATGCTATGGGTATTGCAATTTCCCTCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR GCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATGGCAGGCTGCCATTCTaGGTCTTCCACGGAAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHGRLPF*VFHGKA Trigger: CGCCTTTCCGTGGAAGACGCAGAATGGCAGCCTGCC...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR TCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATTCCTGGCTACTCTTTTaGCTCTGGAGGACCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHSWLLF*LWRTRV Trigger: AACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGA...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR TCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATCCAGATGCCTCAGAATaGCTTCATTGTTGCCGATCC | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHPDASE*LHCCRS Trigger: GGATCGGCAACAATGAAGTCATTCTGAGGCATCTGG...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR GCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATGGGGATGGCACCAGATaGCTCAGAATGACTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHGDGTR*LRMTSL Trigger: CAATGAAGTCATTCTGAGGCATCTGGTGCCATCCCC...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATACAGGTAATGGGGGTTaGAGGAGGAATCTTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHTGNGG*RRNLVG Trigger: CCCAACAAGATTCCTCCTCCAACCCCCATTACCTGT...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR GCA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATGACTCCATGGTACAGTaGTGGGTGACATTGACTACA | + |
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Preference number: 4 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHDSMVQ*WVTLTT Trigger: TGTAGTCAATGTCACCCAGCACTGTACCATGGAGTC...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR GCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAGGCAGGCTGCCATTCTaGGTCTTCCACGGAAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLGRLPF*VFHGKA Trigger: CGCCTTTCCGTGGAAGACGCAGAATGGCAGCCTGCC...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CCA 90 bp | AAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTGGTGCACACCGTCTCCAGCAGCACCTaGGCCATATCGTACAACACC | + |
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Preference number: 4 (lower is better) Translates to: KARQSQNTRTNTDMVVHTVSSST*AISYNT Trigger: GGTGTTGTACGATATGGCCCAGGTGCTGCTGGAGAC...GGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| CDS-3UTR CCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAGTCTCCAGCAGCACCTaGGCCATATCGTACAACACC | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLVSSST*AISYNT Trigger: GGTGTTGTACGATATGGCCCAGGTGCTGCTGGAGAC...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR TCA 90 bp | AAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTGGTGCACACCGTTGGGGAGCACATTTaGTGTGGGTTCAGTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: KARQSQNTRTNTDMVVHTVGEHI*CGFSSC Trigger: ACAAGAACTGAACCCACATCAAATGTGCTCCCCAAC...GGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| CDS-3UTR TCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTATCCTGGCTACTCTTTTaGCTCTGGAGGACCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLSWLLF*LWRTRV Trigger: AACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGA...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR GCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAGGGGATGGCACCAGATaGCTCAGAATGACTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLGDGTR*LRMTSL Trigger: CAATGAAGTCATTCTGAGGCATCTGGTGCCATCCCC...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAACAGGTAATGGGGGTTaGAGGAGGAATCTTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLTGNGG*RRNLVG Trigger: CCCAACAAGATTCCTCCTCCAACCCCCATTACCTGT...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR TCA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAGTTGGGGAGCACATTTaGTGTGGGTTCAGTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLVGEHI*CGFSSC Trigger: ACAAGAACTGAACCCACATCAAATGTGCTCCCCAAC...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS GCA 90 bp | ACTGAGCGCCGGACCCTCCTCATATCCCCAGGGGATGGCACCAGATaGCTCAGAATGACTTCATTGTTGCCGATCCCTTCCTCCTGGCTA | + |
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Preference number: 5 (lower is better) Translates to: TERRTLLISPGDGTR*LRMTSLLPIPSSWL Trigger: TAGCCAGGAGGAAGGGATCGGCAACAATGAAGTCATTCTGAGGCATCTGGTGCCATCCCCTGGGGATATGAGGAGGGTCCGGCGCTCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 90 bp | ACAGGTAATGGGGGTTGGAGGAGGAATCTTGTTGGGGAGCACATTTaGTGTGGGTTCAGTTCTTGTGACGGCTGGCAGGCTGCCATTCTG | + |
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Preference number: 5 (lower is better) Translates to: TGNGGWRRNLVGEHI*CGFSSCDGWQAAIL Trigger: CAGAATGGCAGCCTGCCAGCCGTCACAAGAACTGAACCCACATCAAATGTGCTCCCCAACAAGATTCCTCCTCCAACCCCCATTACCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CAA 90 bp | CACCGTGGGCAGCTGCTGTGTGCACACCTACTAAAGGGCTATGAGAAAGTTCATCTCCTGGCTACTCTTTaGACTCTGGAGGACCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: HRGQLLCAHLLKGYEKVHLLATL*TLEDQG Trigger: ACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGAG...ATGAACTTTCTCATAGCCCTTTAGTAGGTGTGCACACAGCAGCTGCCCACGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS GCA 90 bp | CTCCTGGCTACTTCATTCATACTTTCCCAAGACTCCATGGTACAGTaGTGGGTGACATTGACTACAGAGGCCTTGAACTCTCTTACTAGG | + |
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Preference number: 5 (lower is better) Translates to: LLATSFILSQDSMVQ*WVTLTTEALNSLTR Trigger: CCTAGTAAGAGAGTTCAAGGCCTCTGTAGTCAATGTCACCCAGCACTGTACCATGGAGTCTTGGGAAAGTATGAATGAAGTAGCCAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CAA 90 bp | AAAGCAAGACAATCTCAAAATACCAGAACAAATACAGACATGGTGGTGCACACCTCAATAGGAGGGAGCTaGTTCGCCGTCTCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: KARQSQNTRTNTDMVVHTSIGGS*FAVSSS Trigger: GCTGCTGGAGACGGCGAACAAGCTCCCTCCTATTGA...GGTGTGCACCACCATGTCTGTATTTGTTCTGGTATTTTGAGATTGTCTTGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218722.2 |
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| CDS-3UTR CAA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTATCAATAGGAGGGAGCTaGTTCGCCGTCTCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLSIGGS*FAVSSS Trigger: GCTGCTGGAGACGGCGAACAAGCTCCCTCCTATTGA...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CAA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAGGAGGAGGAATCTTGTaGGGGAGCACATTTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLGGGIL*GSTFDV Trigger: CACATCAAATGTGCTCCCCAACAAGATTCCTCCTCC...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS-3UTR CAA 90 bp | ATATCCCAAAACAATATGAATACAACCAAGGCCCAGAATTCAGCTGGGAAATTAAGAATGACTTCATTGTaGCCGATCCCTTCCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: ISQNNMNTTKAQNSAGKLRMTSL*PIPSSW Trigger: CCAGGAGGAAGGGATCGGCAACAATGAAGTCATTCT...TAATTTCCCAGCTGAATTCTGGGCCTTGGTTGTATTCATATTGTTTTGGGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 72 bp | CCCGGGTTCATAGGTGCACGCCTCAGGCAGGGTAACTaGGCGCCGGACCCTCCTCATATCCCCAGGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: PGFIGARLRQGN*APDPPHIPRGW Trigger: CCATCCCCTGGGGATATGAGGAGGGTCCGGCGCTCAGTTACCCTGCCTGAGGCGTGCACCTATGAACCCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS GCA 72 bp | GGTTCAGTTCTTGTGACGGCTGGCAGGCTGCCATTCTaGGTCTTCCACGGAAAGGCGGTCACCGGGGACAGT | + |
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Preference number: 6 (lower is better) Translates to: GSVLVTAGRLPF*VFHGKAVTGDS Trigger: ACTGTCCCCGGTGACCGCCTTTCCGTGGAAGACGCAGAATGGCAGCCTGCCAGCCGTCACAAGAACTGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 72 bp | CCAGGGTTTCCGCGCTGTCTTTTCCTCCCATTTCACTaGTCCGAAGCTGCAGACTGTAGGCCTCGGCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PGFPRCLFLPFH*SEAADCRPRQG Trigger: GCCCTGCCGAGGCCTACAGTCTGCAGCTTCGGATCAGTGAAATGGGAGGAAAAGACAGCGCGGAAACCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 72 bp | GGGGGTTGGAGGAGGAATCTTGTTGGGGAGCACATTTaGTGTGGGTTCAGTTCTTGTGACGGCTGGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: GGWRRNLVGEHI*CGFSSCDGWQA Trigger: AGCCTGCCAGCCGTCACAAGAACTGAACCCACATCAAATGTGCTCCCCAACAAGATTCCTCCTCCAACCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS CAA 72 bp | GCCTTGAACTCTCTTACTAGGTCAATAGGAGGGAGCTaGTTCGCCGTCTCCAGCAGCACCTGGGCCATATCG | + |
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Preference number: 6 (lower is better) Translates to: ALNSLTRSIGGS*FAVSSSTWAIS Trigger: CGATATGGCCCAGGTGCTGCTGGAGACGGCGAACAAGCTCCCTCCTATTGACCTAGTAAGAGAGTTCAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 72 bp | TCATATCCCCAGGGGATGGCACCAGATGCCTCAGAATaGCTTCATTGTTGCCGATCCCTTCCTCCTGGCTAC | + |
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Preference number: 6 (lower is better) Translates to: SYPQGMAPDASE*LHCCRSLPPGY Trigger: GTAGCCAGGAGGAAGGGATCGGCAACAATGAAGTCATTCTGAGGCATCTGGTGCCATCCCCTGGGGATATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS CAA 90 bp | TACAAGAGGTCCCGACAGGTAATGGGGGTTGGAGGAGGAATCTTGTaGGGGAGCACATTTGATGTGGGTTCAGTTCTTGTGACGGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: YKRSRQVMGVGGGIL*GSTFDVGSVLVTAG Trigger: GCCAGCCGTCACAAGAACTGAACCCACATCAAATGTGCTCCCCAACAAGATTCCTCCTCCAACCCCCATTACCTGTCGGGACCTCTTGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS TCA 72 bp | TCATTGTTGCCGATCCCTTCCTCCTGGCTACTCTTTTaGCTCTGGAGGACCAGGGTTTCCGCGCTGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SLLPIPSSWLLF*LWRTRVSALSF Trigger: AAAAGACAGCGCGGAAACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGAGGAAGGGATCGGCAACAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS CAA 72 bp | TTCATTGTTGCCGATCCCTTCCTCCTGGCTACTCTTTaGACTCTGGAGGACCAGGGTTTCCGCGCTGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FIVADPFLLATL*TLEDQGFRAVF Trigger: AAAGACAGCGCGGAAACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGAGGAAGGGATCGGCAACAATGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS CAA 90 bp | CAGAATGACTTCATTGTTGCCGATCCCTTCCTCCTGGCTACTCTTTaGACTCTGGAGGACCAGGGTTTCCGCGCTGTCTTTTCCTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: QNDFIVADPFLLATL*TLEDQGFRAVFSSH Trigger: ATGGGAGGAAAAGACAGCGCGGAAACCCTGGTCCTCCAGAGTCAAAAGAGTAGCCAGGAGGAAGGGATCGGCAACAATGAAGTCATTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS CAA 72 bp | TCCCGACAGGTAATGGGGGTTGGAGGAGGAATCTTGTaGGGGAGCACATTTGATGTGGGTTCAGTTCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SRQVMGVGGGIL*GSTFDVGSVLV Trigger: CACAAGAACTGAACCCACATCAAATGTGCTCCCCAACAAGATTCCTCCTCCAACCCCCATTACCTGTCGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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| CDS GCA 72 bp | ACTTCATTCATACTTTCCCAAGACTCCATGGTACAGTaGTGGGTGACATTGACTACAGAGGCCTTGAACTCT | + |
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Preference number: 6 (lower is better) Translates to: TSFILSQDSMVQ*WVTLTTEALNS Trigger: AGAGTTCAAGGCCTCTGTAGTCAATGTCACCCAGCACTGTACCATGGAGTCTTGGGAAAGTATGAATGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060782.5 ENSMUST00000218722.2 |
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