RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APOLD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090698

Ensembl transcript IDs: ENSMUST00000167323.3

Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACGGCGTCAGGGAATGGCTTCAGCCGGATGATGGAAGGAGAGCCTaGGGTATACTCCAGTGCCCACACAGGCAGTCTAAAAGTGACAGC +
Preference number: 1 (lower is better)
Translates to: DGVREWLQPDDGRRA*GILQCPHRQSKSDS
Trigger: GCTGTCACTTTTAGACTGCCTGTGTGGGCACTGGAGTATACCTCAGGCTCTCCTTCCATCATCCGGCTGAAGCCATTCCCTGACGCCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 90 bp AAGAGAAGGTGGCTAAGTCACACGACCGGTGGGGGACAGAGCCTGTaGTCAGTCCAAGACTGTTTAACTCAAAGGCCGTTGCTCTCCTCT +
Preference number: 1 (lower is better)
Translates to: KRRWLSHTTGGGQSL*SVQDCLTQRPLLSS
Trigger: AGAGGAGAGCAACGGCCTTTGAGTTAAACAGTCTTGGACTGATCACAGGCTCTGTCCCCCACCGGTCGTGTGACTTAGCCACCTTCTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 90 bp AACTGGGGTGGGAAGAGCAGAGCAAGTCAGCTCCGCGGCCCAGGTTaGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAGT +
Preference number: 1 (lower is better)
Translates to: NWGGKSRASQLRGPG*VYNPYKDKKDHILS
Trigger: ACTGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGCGGAGCTGACTTGCTCTGCTCTTCCCACCCCAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 90 bp GGGGACAGAGTAACTGGCTTTACAAGCACACAGCATAGTCTTTCTTaGGCTGCTGGGCCAGTCTTTCCTGGACTTTCTGAGAGTGACTCT +
Preference number: 1 (lower is better)
Translates to: GDRVTGFTSTQHSLS*AAGPVFPGLSESDS
Trigger: AGAGTCACTCTCAGAAAGTCCAGGAAAGACTGGCCCAGCAGCCCAAGAAAGACTATGCTGTGTGCTTGTAAAGCCAGTTACTCTGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 90 bp TTTGAAGCCATGCTGGGAAAGTATGCAATAGTCAGATTTGGTCTATaGGTGGATAAACTGGGGTGGGAAGAGCAGAGCAAGTCAGCTCCG +
Preference number: 1 (lower is better)
Translates to: FEAMLGKYAIVRFGL*VDKLGWEEQSKSAP
Trigger: CGGAGCTGACTTGCTCTGCTCTTCCCACCCCAGTTTATCCACTCATAGACCAAATCTGACTATTGCATACTTTCCCAGCATGGCTTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 90 bp CATTGTATTTTTGAGATGAGGTCTCATTGTGTAGCTCGGGTGCCCTaGAACTCAACCTCTAGACCCTTCTGCCATCTGTGGATGGAAAGT +
Preference number: 1 (lower is better)
Translates to: HCIFEMRSHCVARVP*NSTSRPFCHLWMES
Trigger: ACTTTCCATCCACAGATGGCAGAAGGGTCTAGAGGTTGAGTTCCAGGGCACCCGAGCTACACAATGAGACCTCATCTCAAAAATACAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 90 bp TTAGTACTTTGCTATATACTCAAAACATTCCCATTTTGGGTTATATaGAACAGGTCGGTAATGGAGGAGTATAACCCGAGACAAAGCACC +
Preference number: 1 (lower is better)
Translates to: LVLCYILKTFPFWVI*NRSVMEEYNPRQST
Trigger: GGTGCTTTGTCTCGGGTTATACTCCTCCATTACCGACCTGTTCCATATAACCCAAAATGGGAATGTTTTGAGTATATAGCAAAGTACTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 90 bp TTCAGAAGCTTAGTACTTTGCTATATACTCAAAACATTCCCATTTTaGGTTATATGGAACAGGTCGGTAATGGAGGAGTATAACCCGAGA +
Preference number: 1 (lower is better)
Translates to: FRSLVLCYILKTFPF*VIWNRSVMEEYNPR
Trigger: TCTCGGGTTATACTCCTCCATTACCGACCTGTTCCATATAACCCAAAATGGGAATGTTTTGAGTATATAGCAAAGTACTAAGCTTCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CAA 90 bp AAACTGGGGTGGGAAGAGCAGAGCAAGTCAGCTCCGCGGCCCAGGTaGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAG +
Preference number: 2 (lower is better)
Translates to: KLGWEEQSKSAPRPR*GLQSLQRQKGSHTQ
Trigger: CTGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGCGGAGCTGACTTGCTCTGCTCTTCCCACCCCAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AGGTCCTTTCTTATCTCAGGGCTTCACAACAGGGTGTGTTCTTACCACCATCTGAAGTCACACGACCGGTaGGGGACAGAGCCTGTGATC +
Preference number: 2 (lower is better)
Translates to: RSFLISGLHNRVCSYHHLKSHDR*GTEPVI
Trigger: GATCACAGGCTCTGTCCCCCACCGGTCGTGTGACTT...CAGATGGTGGTAAGAACACACCCTGTTGTGAAGCCCTGAGATAAGAAAGGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR TCA 90 bp CTACAGAGTGAGTTCTGGGACATCCAGGGCTGCCTAGAGAAAGACACAGTGTCACTAGAAATCCAAACCTaGCCTCCTGGAAAGAGCCTT +
Preference number: 2 (lower is better)
Translates to: LQSEFWDIQGCLEKDTVSLEIQT*PPGKSL
Trigger: AAGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAG...TGACACTGTGTCTTTCTCTAGGCAGCCCTGGATGTCCCAGAACTCACTCTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR TCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTATGGCTTCAGCCGGATaGTGGAAGGAGAGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLMASAG*WKESLR
Trigger: CCTCAGGCTCTCCTTCCATCATCCGGCTGAAGCCAT...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp CTACAGAGTGAGTTCTGGGACATCCAGGGCTGCCTAGAGAAAGACACAGTGTCATATGAGTGGATAAACTaGGGTGGGAAGAGCAGAGCA +
Preference number: 2 (lower is better)
Translates to: LQSEFWDIQGCLEKDTVSYEWIN*GGKSRA
Trigger: TGCTCTGCTCTTCCCACCCCAGTTTATCCACTCATA...TGACACTGTGTCTTTCTCTAGGCAGCCCTGGATGTCCCAGAACTCACTCTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR TCA 90 bp TCTCTGAGGGAAAAAGACTCTAGAAATCCAAACCTGACCTCCTGGAAAGAGCCTGGGGGACAGAGCCTGTaGTCAGTCCAAGACTGTTTA +
Preference number: 2 (lower is better)
Translates to: SLREKDSRNPNLTSWKEPGGQSL*SVQDCL
Trigger: TAAACAGTCTTGGACTGATCACAGGCTCTGTCCCCC...AGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAGAGTCTTTTTCCCTCAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AGGTCCTTTCTTATCTCAGGGCTTCACAACAGGGTGTGTTCTTACCACCATCTGGTGGATAAACTGGGGTaGGAAGAGCAGAGCAAGTCA +
Preference number: 2 (lower is better)
Translates to: RSFLISGLHNRVCSYHHLVDKLG*EEQSKS
Trigger: TGACTTGCTCTGCTCTTCCCACCCCAGTTTATCCAC...CAGATGGTGGTAAGAACACACCCTGTTGTGAAGCCCTGAGATAAGAAAGGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp TCTCTGAGGGAAAAAGACTCTAGAAATCCAAACCTGACCTCCTGGAAAGAGCCTCTCAGCAAGAGAAGGTaGCTAAGTCACACGACCGGT +
Preference number: 2 (lower is better)
Translates to: SLREKDSRNPNLTSWKEPLSKRR*LSHTTG
Trigger: ACCGGTCGTGTGACTTAGCCACCTTCTCTTGCTGAG...AGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAGAGTCTTTTTCCCTCAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AGTTTAGTCTCTCTCTCTCTCCTCAGGACTCCCCCATCTTACTTACAGGGATCGGATTTGGTCTATGAGTaGATAAACTGGGGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: SLVSLSLLRTPPSYLQGSDLVYE*INWGGK
Trigger: CTTCCCACCCCAGTTTATCCACTCATAGACCAAATC...CGATCCCTGTAAGTAAGATGGGGGAGTCCTGAGGAGAGAGAGAGAGACTAAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTCTACAGAGTGAGTTCTaGGACATCCAGGGCTGCCTA +
Preference number: 2 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLLQSEF*DIQGCL
Trigger: TAGGCAGCCCTGGATGTCCCAGAACTCACTCTGTAG...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AGGTCCTTTCTTATCTCAGGGCTTCACAACAGGGTGTGTTCTTACCACCATCTGGATCACATACTCAGTTaGGATTACACAAGCGAAAAG +
Preference number: 2 (lower is better)
Translates to: RSFLISGLHNRVCSYHHLDHILS*DYTSEK
Trigger: CTTTTCGCTTGTGTAATCCCAACTGAGTATGTGATC...CAGATGGTGGTAAGAACACACCCTGTTGTGAAGCCCTGAGATAAGAAAGGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCATCTTTCTTGGGCTGCTaGGCCAGTCTTTCCTGGACT +
Preference number: 2 (lower is better)
Translates to: NFHNMPTHKKENDQANPSSFLGC*ASLSWT
Trigger: AGTCCAGGAAAGACTGGCCCAGCAGCCCAAGAAAGA...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp CCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCTTCCCTTCTGCCATCTGTaGATGGAAAGTAGACACTCT +
Preference number: 2 (lower is better)
Translates to: PNIYFSLFICATNPFDLLPFCHL*MESRHS
Trigger: AGAGTGTCTACTTTCCATCCACAGATGGCAGAAGGG...AAGCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTAAAACATTCCCATTTTaGGTTATATGGAACAGGTCG +
Preference number: 2 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLKTFPF*VIWNRS
Trigger: CGACCTGTTCCATATAACCCAAAATGGGAATGTTTT...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CCA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCACCATTTTGGGTTATATaGAACAGGTCGGTAATGGAG +
Preference number: 2 (lower is better)
Translates to: NFHNMPTHKKENDQANPSPFWVI*NRSVME
Trigger: CTCCATTACCGACCTGTTCCATATAACCCAAAATGG...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 72 bp TGGCTAAGTCACACGACCGGTGGGGGACAGAGCCTGTaGTCAGTCCAAGACTGTTTAACTCAAAGGCCGTTG +
Preference number: 3 (lower is better)
Translates to: WLSHTTGGGQSL*SVQDCLTQRPL
Trigger: CAACGGCCTTTGAGTTAAACAGTCTTGGACTGATCACAGGCTCTGTCCCCCACCGGTCGTGTGACTTAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 72 bp AGGGAATGGCTTCAGCCGGATGATGGAAGGAGAGCCTaGGGTATACTCCAGTGCCCACACAGGCAGTCTAAA +
Preference number: 3 (lower is better)
Translates to: REWLQPDDGRRA*GILQCPHRQSK
Trigger: TTTAGACTGCCTGTGTGGGCACTGGAGTATACCTCAGGCTCTCCTTCCATCATCCGGCTGAAGCCATTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp GGGAAGAGCAGAGCAAGTCAGCTCCGCGGCCCAGGTTaGGTCTACAATCCCTACAAAGACAAAAAGGATCAC +
Preference number: 3 (lower is better)
Translates to: GKSRASQLRGPG*VYNPYKDKKDH
Trigger: GTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGCGGAGCTGACTTGCTCTGCTCTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 72 bp GCGCCACAAACCCTTTCGACCTGCTTGCTTATAGAATaGCGGTCGAAAGGGAAAACCCACTCCACTGTCCCA +
Preference number: 3 (lower is better)
Translates to: APQTLSTCLLIE*RSKGKTHSTVP
Trigger: TGGGACAGTGGAGTGGGTTTTCCCTTTCGACCGTCATTCTATAAGCAAGCAGGTCGAAAGGGTTTGTGGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp TTTGAGATGAGGTCTCATTGTGTAGCTCGGGTGCCCTaGAACTCAACCTCTAGACCCTTCTGCCATCTGTGG +
Preference number: 3 (lower is better)
Translates to: FEMRSHCVARVP*NSTSRPFCHLW
Trigger: CCACAGATGGCAGAAGGGTCTAGAGGTTGAGTTCCAGGGCACCCGAGCTACACAATGAGACCTCATCTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CAA 90 bp TCTCTGAGGGAAAAAGACTCTAGAAATCCAAACCTGACCTCCTGGAAAGAGCCTGCTCCGCGGCCCAGGTaGGGTCTACAATCCCTACAA +
Preference number: 3 (lower is better)
Translates to: SLREKDSRNPNLTSWKEPAPRPR*GLQSLQ
Trigger: TTGTAGGGATTGTAGACCCAACCTGGGCCGCGGAGC...AGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAGAGTCTTTTTCCCTCAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp GGAACTCAACCTCTAGACCCTTCTGCCATCTGTGGATaGAAAGTAGACACTCTCAGATGCGCACACAGCAGA +
Preference number: 3 (lower is better)
Translates to: GTQPLDPSAICG*KVDTLRCAHSR
Trigger: TCTGCTGTGTGCGCATCTGAGAGTGTCTACTTTCCATCCACAGATGGCAGAAGGGTCTAGAGGTTGAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 72 bp GCGAAAAGTCCTTCACACACACAAGGAGCTAAGGACTaGCGGAAGCCCTGCAAGAAGAGTTCCTATCATCCT +
Preference number: 3 (lower is better)
Translates to: AKSPSHTQGAKD*RKPCKKSSYHP
Trigger: AGGATGATAGGAACTCTTCTTGCAGGGCTTCCGTCAGTCCTTAGCTCCTTGTGTGTGTGAAGGACTTTTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp GTAACTGGCTTTACAAGCACACAGCATAGTCTTTCTTaGGCTGCTGGGCCAGTCTTTCCTGGACTTTCTGAG +
Preference number: 3 (lower is better)
Translates to: VTGFTSTQHSLS*AAGPVFPGLSE
Trigger: CTCAGAAAGTCCAGGAAAGACTGGCCCAGCAGCCCAAGAAAGACTATGCTGTGTGCTTGTAAAGCCAGTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR GCA 72 bp TCTGCCATCTGTGGATGGAAAGTAGACACTCTCAGATaGGCACACAGCAGACCACTGATAAAACCTTCAGAA +
Preference number: 3 (lower is better)
Translates to: SAICGWKVDTLR*AHSRPLIKPSE
Trigger: TTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGAGTGTCTACTTTCCATCCACAGATGGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR TCA 72 bp ATGCTGGGAAAGTATGCAATAGTCAGATTTGGTCTATaGGTGGATAAACTGGGGTGGGAAGAGCAGAGCAAG +
Preference number: 3 (lower is better)
Translates to: MLGKYAIVRFGL*VDKLGWEEQSK
Trigger: CTTGCTCTGCTCTTCCCACCCCAGTTTATCCACTCATAGACCAAATCTGACTATTGCATACTTTCCCAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CAA 90 bp CCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCTTCCTAGAGGTGTGAATTaGAAGCCATGCTGGGAAAGT +
Preference number: 3 (lower is better)
Translates to: PNIYFSLFICATNPFDLLPRGVN*KPCWES
Trigger: ACTTTCCCAGCATGGCTTCAAATTCACACCTCTAGG...AAGCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp TCTCTAGGATCAATTGTACTGAACTTTGCTAACCCCTaGCAAATCCTCCAATTTTCACAACATGCCTACACA +
Preference number: 3 (lower is better)
Translates to: SLGSIVLNFANP*QILQFSQHAYT
Trigger: TGTGTAGGCATGTTGTGAAAATTGGAGGATTTGCCAGGGGTTAGCAAAGTTCAGTACAATTGATCCTAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR-3UTR CAA 90 bp CCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCTTCAAAACATTCCCATTTaGGGTTATATGGAACAGGTC +
Preference number: 3 (lower is better)
Translates to: PNIYFSLFICATNPFDLLQNIPI*GYMEQV
Trigger: GACCTGTTCCATATAACCCAAAATGGGAATGTTTTG...AAGCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp AATCCCTACAAAGACAAAAAGGATCACATACTCAGTTaGGATTACACAAGCGAAAAGTCCTTCACACACACA +
Preference number: 3 (lower is better)
Translates to: NPYKDKKDHILS*DYTSEKSFTHT
Trigger: TGTGTGTGTGAAGGACTTTTCGCTTGTGTAATCCCAACTGAGTATGTGATCCTTTTTGTCTTTGTAGGGATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CCA 72 bp TGCTATATACTCAAAACATTCCCATTTTGGGTTATATaGAACAGGTCGGTAATGGAGGAGTATAACCCGAGA +
Preference number: 3 (lower is better)
Translates to: CYILKTFPFWVI*NRSVMEEYNPR
Trigger: TCTCGGGTTATACTCCTCCATTACCGACCTGTTCCATATAACCCAAAATGGGAATGTTTTGAGTATATAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp GGTGGGAAGAGCAGAGCAAGTCAGCTCCGCGGCCCAGGTTGGGTCTACAATCCCCTGCGTCCCTGCCACTaGCAGAAGAACTCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GGKSRASQLRGPGWVYNPLRPCH*QKNSRQ
Trigger: CTGCCTGGAGTTCTTCTGTCAGTGGCAGGGACGCAG...GGGATTGTAGACCCAACCTGGGCCGCGGAGCTGACTTGCTCTGCTCTTCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp AGTTTAGTCTCTCTCTCTCTCCTCAGGACTCCCCCATCTTACTTACAGGGATCGAGCTGCCCGCCACGTTaGCCGCCAGGGAGCGCCTGC +
Preference number: 4 (lower is better)
Translates to: SLVSLSLLRTPPSYLQGSSCPPR*PPGSAC
Trigger: GCAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCT...CGATCCCTGTAAGTAAGATGGGGGAGTCCTGAGGAGAGAGAGAGAGACTAAACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp GCGGCCCAGGTTGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAGGCCACGGCCGGCCTTaGTGCAGAGCTGGACCCGGG +
Preference number: 4 (lower is better)
Translates to: AAQVGSTIPTKTKRITYSGHGRP*CRAGPG
Trigger: CCCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCC...TGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp TGGATAAACTGGGGTGGGAAGAGCAGAGCAAGTCAGCTCCGCGGCCCAGGTTGGCGACTCCAGGCTCTCTaGCAGTTTCTGAATCTTGGC +
Preference number: 4 (lower is better)
Translates to: WINWGGKSRASQLRGPGWRLQAL*QFLNLG
Trigger: GCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCG...CCAACCTGGGCCGCGGAGCTGACTTGCTCTGCTCTTCCCACCCCAGTTTATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp AGTTTAGTCTCTCTCTCTCTCCTCAGGACTCCCCCATCTTACTTACAGGGATCGGGTGACCGGGCTGAGTaGCAACCCCACGATGGCTGC +
Preference number: 4 (lower is better)
Translates to: SLVSLSLLRTPPSYLQGSGDRAE*QPHDGC
Trigger: GCAGCCATCGTGGGGTTGTCACTCAGCCCGGTCACC...CGATCCCTGTAAGTAAGATGGGGGAGTCCTGAGGAGAGAGAGAGAGACTAAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp AGTTTAGTCTCTCTCTCTCTCCTCAGGACTCCCCCATCTTACTTACAGGGATCGCGGCACGTCTGGGGATaGGGAAGCCACGTGAGCCGA +
Preference number: 4 (lower is better)
Translates to: SLVSLSLLRTPPSYLQGSRHVWG*GSHVSR
Trigger: TCGGCTCACGTGGCTTCCTCATCCCCAGACGTGCCG...CGATCCCTGTAAGTAAGATGGGGGAGTCCTGAGGAGAGAGAGAGAGACTAAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR GCA 90 bp AGACACTCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTACGGCGCTCAGAGAGCTaGCCGCCACGTTGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: RHSQMRTQQTTDKTFRSLRRSES*PPRWPP
Trigger: TGGCGGCCAACGTGGCGGGCAGCTCTCTGAGCGCCG...TAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGAGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR GCA 90 bp TCTCTGAGGGAAAAAGACTCTAGAAATCCAAACCTGACCTCCTGGAAAGAGCCTGCGTCCCTCCCGCTCTaGAGCAGCTGGCGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SLREKDSRNPNLTSWKEPASLPL*SSWRSL
Trigger: CAGGGACCGCCAGCTGCTGCAGAGCGGGAGGGACGC...AGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAGAGTCTTTTTCCCTCAGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp TCTCTGAGGGAAAAAGACTCTAGAAATCCAAACCTGACCTCCTGGAAAGAGCCTCGCAGGCGCAGCACTTaGCTGTGCAGCCGGCCACGG +
Preference number: 4 (lower is better)
Translates to: SLREKDSRNPNLTSWKEPRRRST*LCSRPR
Trigger: CCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCG...AGGCTCTTTCCAGGAGGTCAGGTTTGGATTTCTAGAGTCTTTTTCCCTCAGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR GCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTGGACGTGATGGTGACTaGCCCTCCGGCGGTGGCCAC +
Preference number: 4 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLGRDGD*PSGGGH
Trigger: GTGGCCACCGCCGGAGGGGCAGTCACCATCACGTCC...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp ACCCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCCCGCTCTGCAGCAGCTaGCGGTCCCTGCGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: TLTFISLFSFAPQTLSTCPLCSS*RSLRPC
Trigger: GCAGGGACGCAGGGACCGCCAGCTGCTGCAGAGCGG...GCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp GCGGCCCAGGTTGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCATCCAGCAGCAATCCTTaGAAGCGCCGCAGCGCATCG +
Preference number: 4 (lower is better)
Translates to: AAQVGSTIPTKTKRITYSSSSNP*KRRSAS
Trigger: CGATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGA...TGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCACTGCCCCTCCGGCGGTaGCCACCCCTAAGCCCACGG +
Preference number: 4 (lower is better)
Translates to: NFHNMPTHKKENDQANPSLPLRR*PPLSPR
Trigger: CCGTGGGCTTAGGGGTGGCCACCGCCGGAGGGGCAG...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp CTACAGAGTGAGTTCTGGGACATCCAGGGCTGCCTAGAGAAAGACACAGTGTCAACAGTTTCTGAATCTTaGCCTTCAGGACGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: LQSEFWDIQGCLEKDTVSTVSES*PSGRPG
Trigger: GCCAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGT...TGACACTGTGTCTTTCTCTAGGCAGCCCTGGATGTCCCAGAACTCACTCTGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp GCGGCCCAGGTTGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAGATGAGGAAGCCACGTaGGCCGAAGAAGACGATGAA +
Preference number: 4 (lower is better)
Translates to: AAQVGSTIPTKTKRITYSDEEAT*AEEDDE
Trigger: TTCATCGTCTTCTTCGGCTCACGTGGCTTCCTCATC...TGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp TTTTGTTTGTTTTTGCTGGTAACTTCACATTACCTCTGTACCAGTCTCTACATGTCTGGTCCTGGCAGGTaGCGGCGATCTCCTGCACCC +
Preference number: 4 (lower is better)
Translates to: FCLFLLVTSHYLCTSLYMSGPGR*RRSPAP
Trigger: GGGTGCAGGAGATCGCCGCCACCTGCCAGGACCAGA...CATGTAGAGACTGGTACAGAGGTAATGTGAAGTTACCAGCAAAAACAAACAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CCA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCAAGAAGCTCGCGCATCTaGTCCTGGCAGGTGGCGGCG +
Preference number: 4 (lower is better)
Translates to: NFHNMPTHKKENDQANPSRSSRI*SWQVAA
Trigger: CGCCGCCACCTGCCAGGACCAGATGCGCGAGCTTCT...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR GCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTGCACCTCCCGGGAATTaGAGAAGATCAGAGAGAGGT +
Preference number: 4 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLAPPGN*RRSERG
Trigger: ACCTCTCTCTGATCTTCTGCAATTCCCGGGAGGTGC...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp TCTCAGATGCGCACACAGCAGACCACTGATAAAACCTTCAGAAGCTTAGTACTTCTCTCTGACAGTTTCTaGATCTTGGCCTTCAGGACG +
Preference number: 4 (lower is better)
Translates to: SQMRTQQTTDKTFRSLVLLSDSF*ILAFRT
Trigger: CGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAG...AAGTACTAAGCTTCTGAAGGTTTTATCAGTGGTCTGCTGTGTGCGCATCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CAA 72 bp CAATCCCTACAAAGACAAAAAGGATCACATACTCAGTaGGGATTACACAAGCGAAAAGTCCTTCACACACAC +
Preference number: 4 (lower is better)
Translates to: QSLQRQKGSHTQ*GLHKRKVLHTH
Trigger: GTGTGTGTGAAGGACTTTTCGCTTGTGTAATCCCAACTGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR TCA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCAAGCCGAAGAAGACGATaGAGTAGACAGAGTTGTAAA +
Preference number: 4 (lower is better)
Translates to: NFHNMPTHKKENDQANPSSRRRR*SRQSCK
Trigger: TTTACAACTCTGTCTACTTCATCGTCTTCTTCGGCT...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CAA 72 bp CTTAGTACTTTGCTATATACTCAAAACATTCCCATTTaGGGTTATATGGAACAGGTCGGTAATGGAGGAGTA +
Preference number: 4 (lower is better)
Translates to: LSTLLYTQNIPI*GYMEQVGNGGV
Trigger: TACTCCTCCATTACCGACCTGTTCCATATAACCCAAAATGGGAATGTTTTGAGTATATAGCAAAGTACTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
3UTR CAA 72 bp AACCCACTCCACTGTCCCATGAAAGAAATAAACAATTaGTCTCTAGGATCAATTGTACTGAACTTTGCTAAC +
Preference number: 4 (lower is better)
Translates to: NPLHCPMKEINN*SLGSIVLNFAN
Trigger: GTTAGCAAAGTTCAGTACAATTGATCCTAGAGACAAATTGTTTATTTCTTTCATGGGACAGTGGAGTGGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 90 bp CGGCGCTCAGAGAGCTGCCCGCCACGTTGGCCGCCAGGGAGCGCCTaGGTAGCCGCTCCAGCCTCCGGGCCACTTCGCGCAGGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: RRSESCPPRWPPGSA*VAAPASGPLRAGAA
Trigger: TGCTGCGCCTGCGCGAAGTGGCCCGGAGGCTGGAGCGGCTACGCAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCTCTCTGAGCGCCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 90 bp AGCACTTGGCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAATCCTTaGAAGCGCCGCAGCGCATCGGCGCCCTGCGGCTCCCAGGCCGCC +
Preference number: 5 (lower is better)
Translates to: STWLCSRPRRSSSNP*KRRSASAPCGSQAA
Trigger: GGCGGCCTGGGAGCCGCAGGGCGCCGATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 90 bp CGCTCCAGCCTCCGGGCCACTTCGCGCAGGCGCAGCACTTGGCTGTaGAGCCGGCCACGGCGGTCCAGCAGCAATCCTTGGAAGCGCCGC +
Preference number: 5 (lower is better)
Translates to: RSSLRATSRRRSTWL*SRPRRSSSNPWKRR
Trigger: GCGGCGCTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGCGAAGTGGCCCGGAGGCTGGAGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 90 bp CGTAGCCGCTCCAGCCTCCGGGCCACTTCGCGCAGGCGCAGCACTTaGCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAATCCTTGGAAG +
Preference number: 5 (lower is better)
Translates to: RSRSSLRATSRRRST*LCSRPRRSSSNPWK
Trigger: CTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGCGAAGTGGCCCGGAGGCTGGAGCGGCTACG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 90 bp GGGCCATGGAGGCGTCCCTCCCGCTCTGCAGCAGCTGGCGGTCCCTaGGTCCCTGCCACTGACAGAAGAACTCCAGGCAGCTCAGAAGCT +
Preference number: 5 (lower is better)
Translates to: GPWRRPSRSAAAGGP*VPATDRRTPGSSEA
Trigger: AGCTTCTGAGCTGCCTGGAGTTCTTCTGTCAGTGGCAGGGACGCAGGGACCGCCAGCTGCTGCAGAGCGGGAGGGACGCCTCCATGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 90 bp TGGCCACGGCCGGCCTTGGTGCAGAGCTGGACCCGGGACTCCAGCTaGTCACTAAGTTCATCCAGGGCGCCAGTGCACGACTCCAGGCTC +
Preference number: 5 (lower is better)
Translates to: WPRPALVQSWTRDSS*SLSSSRAPVHDSRL
Trigger: GAGCCTGGAGTCGTGCACTGGCGCCCTGGATGAACTTAGTGAGCAGCTGGAGTCCCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 90 bp TCCCTCCCGCTCTGCAGCAGCTGGCGGTCCCTGCGTCCCTGCCACTaGCAGAAGAACTCCAGGCAGCTCAGAAGCTCGCGCATCTGGTCC +
Preference number: 5 (lower is better)
Translates to: SLPLCSSWRSLRPCH*QKNSRQLRSSRIWS
Trigger: GGACCAGATGCGCGAGCTTCTGAGCTGCCTGGAGTTCTTCTGTCAGTGGCAGGGACGCAGGGACCGCCAGCTGCTGCAGAGCGGGAGGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 90 bp AGAACTCCAGGCAGCTCAGAAGCTCGCGCATCTGGTCCTGGCAGGTaGCGGCGATCTCCTGCACCCTCCGCACCTCCCGGGAATTGCAGA +
Preference number: 5 (lower is better)
Translates to: RTPGSSEARASGPGR*RRSPAPSAPPGNCR
Trigger: TCTGCAATTCCCGGGAGGTGCGGAGGGTGCAGGAGATCGCCGCCACCTGCCAGGACCAGATGCGCGAGCTTCTGAGCTGCCTGGAGTTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 90 bp GTGGAGATCCTGAGGTTGTGGCCACGGCCGGCCTTGGTGCAGAGCTaGACCCGGGACTCCAGCTGCTCACTAAGTTCATCCAGGGCGCCA +
Preference number: 5 (lower is better)
Translates to: VEILRLWPRPALVQS*TRDSSCSLSSSRAP
Trigger: TGGCGCCCTGGATGAACTTAGTGAGCAGCTGGAGTCCCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCCACAACCTCAGGATCTCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 90 bp CTCAGAAGCTCGCGCATCTGGTCCTGGCAGGTGGCGGCGATCTCCTaGACCCTCCGCACCTCCCGGGAATTGCAGAAGATCAGAGAGAGG +
Preference number: 5 (lower is better)
Translates to: LRSSRIWSWQVAAIS*TLRTSRELQKIRER
Trigger: CCTCTCTCTGATCTTCTGCAATTCCCGGGAGGTGCGGAGGGTGCAGGAGATCGCCGCCACCTGCCAGGACCAGATGCGCGAGCTTCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 90 bp GGGCGCCAGTGCACGACTCCAGGCTCTCTGACAGTTTCTGAATCTTaGCCTTCAGGACGGCCTGGCTCACTTTGGTGGCCCCCTCGGCAC +
Preference number: 5 (lower is better)
Translates to: GRQCTTPGSLTVSES*PSGRPGSLWWPPRH
Trigger: GTGCCGAGGGGGCCACCAAAGTGAGCCAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCGTGCACTGGCGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 90 bp TCATCCAGGGCGCCAGTGCACGACTCCAGGCTCTCTGACAGTTTCTaGATCTTGGCCTTCAGGACGGCCTGGCTCACTTTGGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: SSRAPVHDSRLSDSF*ILAFRTAWLTLVAP
Trigger: GGGGGCCACCAAAGTGAGCCAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCGTGCACTGGCGCCCTGGATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 90 bp CACTTTGGTGGCCCCCTCGGCACGTCTGGGGATGAGGAAGCCACGTaGGCCGAAGAAGACGATGAAGTAGACAGAGTTGTAAAGGGCCAT +
Preference number: 5 (lower is better)
Translates to: HFGGPLGTSGDEEAT*AEEDDEVDRVVKGH
Trigger: ATGGCCCTTTACAACTCTGTCTACTTCATCGTCTTCTTCGGCTCACGTGGCTTCCTCATCCCCAGACGTGCCGAGGGGGCCACCAAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp GCGGCCCAGGTTGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAACGGCCTGGCTCACTTaGGTGGCCCCCTCGGCACGT +
Preference number: 5 (lower is better)
Translates to: AAQVGSTIPTKTKRITYSTAWLT*VAPSAR
Trigger: ACGTGCCGAGGGGGCCACCAAAGTGAGCCAGGCCGT...TGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 90 bp CTCACTAAGTTCATCCAGGGCGCCAGTGCACGACTCCAGGCTCTCTaGCAGTTTCTGAATCTTGGCCTTCAGGACGGCCTGGCTCACTTT +
Preference number: 5 (lower is better)
Translates to: LTKFIQGASARLQAL*QFLNLGLQDGLAHF
Trigger: AAAGTGAGCCAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCGTGCACTGGCGCCCTGGATGAACTTAGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp CCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCTTGAGCTGCCCGCCACGTaGGCCGCCAGGGAGCGCCTG +
Preference number: 5 (lower is better)
Translates to: PNIYFSLFICATNPFDLLELPAT*AARERL
Trigger: CAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCTC...AAGCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp ACCCTAACATTTATTTCTCTCTTTTCATTTGCGCCACAAACCCTTTCGACCTGCTGGCCACGGCCGGCCTaGGTGCAGAGCTGGACCCGG +
Preference number: 5 (lower is better)
Translates to: TLTFISLFSFAPQTLSTCWPRPA*VQSWTR
Trigger: CCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCCA...GCAGGTCGAAAGGGTTTGTGGCGCAAATGAAAAGAGAGAAATAAATGTTAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp GCGGCCCAGGTTGGGTCTACAATCCCTACAAAGACAAAAAGGATCACATACTCAGTCCAGCAGCAATCCTaGGAAGCGCCGCAGCGCATC +
Preference number: 5 (lower is better)
Translates to: AAQVGSTIPTKTKRITYSVQQQS*EAPQRI
Trigger: GATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGAC...TGAGTATGTGATCCTTTTTGTCTTTGTAGGGATTGTAGACCCAACCTGGGCCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp AGACAAAAAGGATCACATACTCAGTTGGGATTACACAAGCGAAAAGTCCTTCACGCGCAGGCGCAGCACTaGGCTGTGCAGCCGGCCACG +
Preference number: 5 (lower is better)
Translates to: RQKGSHTQLGLHKRKVLHAQAQH*AVQPAT
Trigger: CGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGC...GTGAAGGACTTTTCGCTTGTGTAATCCCAACTGAGTATGTGATCCTTTTTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS-3UTR CAA 90 bp AATTTTCACAACATGCCTACACATAAGAAAGAGAATGACCAAGCTAATCCCTCACGCACCTCCCGGGAATaGCAGAAGATCAGAGAGAGG +
Preference number: 5 (lower is better)
Translates to: NFHNMPTHKKENDQANPSRTSRE*QKIRER
Trigger: CCTCTCTCTGATCTTCTGCAATTCCCGGGAGGTGCG...TGAGGGATTAGCTTGGTCATTCTCTTTCTTATGTGTAGGCATGTTGTGAAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp GGGCACCAGCGGCGCTCAGAGAGCTGCCCGCCACGTTaGCCGCCAGGGAGCGCCTGCGTAGCCGCTCCAGCC +
Preference number: 6 (lower is better)
Translates to: GHQRRSESCPPR*PPGSACVAAPA
Trigger: GGCTGGAGCGGCTACGCAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCTCTCTGAGCGCCGCTGGTGCCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 72 bp GAGAGCTGCCCGCCACGTTGGCCGCCAGGGAGCGCCTaGGTAGCCGCTCCAGCCTCCGGGCCACTTCGCGCA +
Preference number: 6 (lower is better)
Translates to: ESCPPRWPPGSA*VAAPASGPLRA
Trigger: TGCGCGAAGTGGCCCGGAGGCTGGAGCGGCTACGCAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCTCTC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 72 bp AGGGCACCAGCGGCGCTCAGAGAGCTGCCCGCCACGTaGGCCGCCAGGGAGCGCCTGCGTAGCCGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RAPAALRELPAT*AARERLRSRSS
Trigger: GCTGGAGCGGCTACGCAGGCGCTCCCTGGCGGCCAACGTGGCGGGCAGCTCTCTGAGCGCCGCTGGTGCCCT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp CTGTGCAGCCGGCCACGGCGGTCCAGCAGCAATCCTTaGAAGCGCCGCAGCGCATCGGCGCCCTGCGGCTCC +
Preference number: 6 (lower is better)
Translates to: LCSRPRRSSSNP*KRRSASAPCGS
Trigger: GGAGCCGCAGGGCGCCGATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 72 bp GCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAATCCTaGGAAGCGCCGCAGCGCATCGGCGCCCTGCGGCTC +
Preference number: 6 (lower is better)
Translates to: AVQPATAVQQQS*EAPQRIGALRL
Trigger: GAGCCGCAGGGCGCCGATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 90 bp CAGCACTTGGCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAATCCTaGGAAGCGCCGCAGCGCATCGGCGCCCTGCGGCTCCCAGGCCGC +
Preference number: 6 (lower is better)
Translates to: QHLAVQPATAVQQQS*EAPQRIGALRLPGR
Trigger: GCGGCCTGGGAGCCGCAGGGCGCCGATGCGCTGCGGCGCTTCCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 72 bp CTCCAGCCTCCGGGCCACTTCGCGCAGGCGCAGCACTaGGCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAA +
Preference number: 6 (lower is better)
Translates to: LQPPGHFAQAQH*AVQPATAVQQQ
Trigger: TTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGCGAAGTGGCCCGGAGGCTGGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 72 bp CTCCGGGCCACTTCGCGCAGGCGCAGCACTTGGCTGTaGAGCCGGCCACGGCGGTCCAGCAGCAATCCTTGG +
Preference number: 6 (lower is better)
Translates to: LRATSRRRSTWL*SRPRRSSSNPW
Trigger: CCAAGGATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGCGAAGTGGCCCGGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp TCCAGCCTCCGGGCCACTTCGCGCAGGCGCAGCACTTaGCTGTGCAGCCGGCCACGGCGGTCCAGCAGCAAT +
Preference number: 6 (lower is better)
Translates to: SSLRATSRRRST*LCSRPRRSSSN
Trigger: ATTGCTGCTGGACCGCCGTGGCCGGCTGCACAGCCAAGTGCTGCGCCTGCGCGAAGTGGCCCGGAGGCTGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS GCA 72 bp CCGGCCTTGGTGCAGAGCTGGACCCGGGACTCCAGCTaGTCACTAAGTTCATCCAGGGCGCCAGTGCACGAC +
Preference number: 6 (lower is better)
Translates to: PALVQSWTRDSS*SLSSSRAPVHD
Trigger: GTCGTGCACTGGCGCCCTGGATGAACTTAGTGAGCAGCTGGAGTCCCGGGTCCAGCTCTGCACCAAGGCCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp AACGCTGCGTCCAGATCAGTGGAGATCCTGAGGTTGTaGCCACGGCCGGCCTTGGTGCAGAGCTGGACCCGG +
Preference number: 6 (lower is better)
Translates to: NAASRSVEILRL*PRPALVQSWTR
Trigger: CCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCCACAACCTCAGGATCTCCACTGATCTGGACGCAGCGTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp CAGAAGAACTCCAGGCAGCTCAGAAGCTCGCGCATCTaGTCCTGGCAGGTGGCGGCGATCTCCTGCACCCTC +
Preference number: 6 (lower is better)
Translates to: QKNSRQLRSSRI*SWQVAAISCTL
Trigger: GAGGGTGCAGGAGATCGCCGCCACCTGCCAGGACCAGATGCGCGAGCTTCTGAGCTGCCTGGAGTTCTTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CCA 72 bp CTGAGGTTGTGGCCACGGCCGGCCTTGGTGCAGAGCTaGACCCGGGACTCCAGCTGCTCACTAAGTTCATCC +
Preference number: 6 (lower is better)
Translates to: LRLWPRPALVQS*TRDSSCSLSSS
Trigger: GGATGAACTTAGTGAGCAGCTGGAGTCCCGGGTCCAGCTCTGCACCAAGGCCGGCCGTGGCCACAACCTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 90 bp TGGCAGGTGGCGGCGATCTCCTGCACCCTCCGCACCTCCCGGGAATaGCAGAAGATCAGAGAGAGGTCGGACGTGATGGTGACTGCCCCT +
Preference number: 6 (lower is better)
Translates to: WQVAAISCTLRTSRE*QKIRERSDVMVTAP
Trigger: AGGGGCAGTCACCATCACGTCCGACCTCTCTCTGATCTTCTGCAATTCCCGGGAGGTGCGGAGGGTGCAGGAGATCGCCGCCACCTGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS CAA 72 bp GCGGCGATCTCCTGCACCCTCCGCACCTCCCGGGAATaGCAGAAGATCAGAGAGAGGTCGGACGTGATGGTG +
Preference number: 6 (lower is better)
Translates to: AAISCTLRTSRE*QKIRERSDVMV
Trigger: CACCATCACGTCCGACCTCTCTCTGATCTTCTGCAATTCCCGGGAGGTGCGGAGGGTGCAGGAGATCGCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 72 bp GCGCCAGTGCACGACTCCAGGCTCTCTGACAGTTTCTaGATCTTGGCCTTCAGGACGGCCTGGCTCACTTTG +
Preference number: 6 (lower is better)
Translates to: APVHDSRLSDSF*ILAFRTAWLTL
Trigger: CAAAGTGAGCCAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCGTGCACTGGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3
CDS TCA 72 bp TTCATCCAGGGCGCCAGTGCACGACTCCAGGCTCTCTaGCAGTTTCTGAATCTTGGCCTTCAGGACGGCCTG +
Preference number: 6 (lower is better)
Translates to: FIQGASARLQAL*QFLNLGLQDGL
Trigger: CAGGCCGTCCTGAAGGCCAAGATTCAGAAACTGTCAGAGAGCCTGGAGTCGTGCACTGGCGCCCTGGATGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167323.3