Pregenerated sensors for APOL9A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057346Ensembl transcript IDs: ENSMUST00000081776.11, ENSMUST00000089452.6, ENSMUST00000231161.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGCTGTGTTCAGCAGCAGGCCTGCACACTCGGTCCCTCGGACCTaGCTGCAGTCTTGCTCTCCTCTGTCCAGGTCCTCTCCCCTGACC | + |
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Preference number: 1 (lower is better) Translates to: CAVFSSRPAHSVPRT*LQSCSPLSRSSPLT Trigger: GGTCAGGGGAGAGGACCTGGACAGAGGAGAGCAAGACTGCAGTCAGGTCCGAGGGACCGAGTGTGCAGGCCTGCTGCTGAACACAGCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR TCA 90 bp | AGCACATCCTTTAGTCTCTCGTCTCAGGCACCAGGGGGTCTCACCTaGTTGTGCTGTGTTCAGCAGCAGGCCTGCACACTCGGTCCCTCG | + |
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Preference number: 1 (lower is better) Translates to: STSFSLSSQAPGGLT*LCCVQQQACTLGPS Trigger: CGAGGGACCGAGTGTGCAGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCCTGAGACGAGAGACTAAAGGATGTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR-3UTR TCA 90 bp | TCAGGCACCAGGGGGTCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTGCACCCAGGTCCTCTCCCCTaGCCTCTGCCTGTCTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SGTRGSHLIVLCSAAGLHPGPLP*PLPVLG Trigger: CCCCAAGACAGGCAGAGGTCAGGGGAGAGGACCTGG...GTGCAGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCCTGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR-3UTR TCA 90 bp | AATCTTTCCAGTCCCTCTCACAGCAGCACATCCTTTAGTCTCTCGTCTCAGGCACCAGGTCCTCTCCCCTaGCCTCTGCCTGTCTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: NLSSPSHSSTSFSLSSQAPGPLP*PLPVLG Trigger: CCCCAAGACAGGCAGAGGTCAGGGGAGAGGACCTGG...TGCCTGAGACGAGAGACTAAAGGATGTGCTGCTGTGAGAGGGACTGGAAAGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR-3UTR CCA 90 bp | GTTTATTTAGGGGACAATGACATGCCTGAGGATGGGCGTGGGCTGGGGAGCTGGCTGGTTTGCCTTTTGTaGGGTCTTGTTTGCAGTAGC | + |
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Preference number: 2 (lower is better) Translates to: VYLGDNDMPEDGRGLGSWLVCLL*GLVCSS Trigger: GCTACTGCAAACAAGACCCCACAAAAGGCAAACCAG...CCAGCTCCCCAGCCCACGCCCATCCTCAGGCATGTCATTGTCCCCTAAATAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR CAA 90 bp | CATGATGTGTTTACAGAGCACACACCTTTCTCTCTGGTTTGCCTTTaGTGGGGTCTTGTTTGCAGTAGCTCAGCTGGGGAGGGCTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: HDVFTEHTPFSLVCL*WGLVCSSSAGEGFL Trigger: TAGAAAGCCCTCCCCAGCTGAGCTACTGCAAACAAGACCCCACAAAAGGCAAACCAGAGAGAAAGGTGTGTGCTCTGTAAACACATCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR GCA 72 bp | GCAGCAGGCCTGCACACTCGGTCCCTCGGACCTGACTaGAGTCTTGCTCTCCTCTGTCCAGGTCCTCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: AAGLHTRSLGPD*SLALLCPGPLP Trigger: GGGGAGAGGACCTGGACAGAGGAGAGCAAGACTGCAGTCAGGTCCGAGGGACCGAGTGTGCAGGCCTGCTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR TCA 72 bp | TTCAGCAGCAGGCCTGCACACTCGGTCCCTCGGACCTaGCTGCAGTCTTGCTCTCCTCTGTCCAGGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: FSSRPAHSVPRT*LQSCSPLSRSS Trigger: AGAGGACCTGGACAGAGGAGAGCAAGACTGCAGTCAGGTCCGAGGGACCGAGTGTGCAGGCCTGCTGCTGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR-3UTR CAA 90 bp | CAGGCTCTAAAGCACAGGGATGGGGCTCATGATGTGTTTACAGAGCACACACCTGCCTTTTGTGGGGTCTaGTTTGCAGTAGCTCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QALKHRDGAHDVFTEHTPAFCGV*FAVAQL Trigger: CAGCTGAGCTACTGCAAACAAGACCCCACAAAAGGC...AGGTGTGTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAGAGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR TCA 72 bp | AGAAGCACAGGCTCTAAAGCACAGGGATGGGGCTCATaGTGTGTTTACAGAGCACACACCTTTCTCTCTGGT | + |
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Preference number: 3 (lower is better) Translates to: RSTGSKAQGWGS*CVYRAHTFLSG Trigger: ACCAGAGAGAAAGGTGTGTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAGAGCCTGTGCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR GCA 72 bp | GATGTGTTTACAGAGCACACACCTTTCTCTCTGGTTTaGCTTTTGTGGGGTCTTGTTTGCAGTAGCTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: DVFTEHTPFSLV*LLWGLVCSSSA Trigger: AGCTGAGCTACTGCAAACAAGACCCCACAAAAGGCAAACCAGAGAGAAAGGTGTGTGCTCTGTAAACACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | CGTCTCAGGCACCAGGGGGTCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTATGTCTCTGGTAGCCTaGGGGACCTTGCTGGCAATC | + |
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Preference number: 4 (lower is better) Translates to: RLRHQGVSPDCAVFSSRPMSLVA*GTLLAI Trigger: GATTGCCAGCAAGGTCCCTCAGGCTACCAGAGACAT...AGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCCTGAGACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | GGCACCAGGGGGTCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTGCACACTATGTCTCTGGTAGCCTaGGGGACCTTGCTGGCAATC | + |
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Preference number: 4 (lower is better) Translates to: GTRGSHLIVLCSAAGLHTMSLVA*GTLLAI Trigger: GATTGCCAGCAAGGTCCCTCAGGCTACCAGAGACAT...AGTGTGCAGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR GCA 90 bp | GTCTCAGGCACCAGGGGGTCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTGGGCTTCATTGCTCATTaGCAGAGGGGTTCCTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: VSGTRGSHLIVLCSAAGLGFIAH*QRGSFQ Trigger: CTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCC...CAGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCCTGAGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR CCA 90 bp | GGAACAACAGAAACGGTTTATTTAGGGGACAATGACATGCCTGAGGATGGGCGTCGGCACCTGCGGCGGTaGCACGTTGGATCCGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GTTETVYLGDNDMPEDGRRHLRR*HVGSGL Trigger: AAGCCCGGATCCAACGTGCCACCGCCGCAGGTGCCG...ACGCCCATCCTCAGGCATGTCATTGTCCCCTAAATAAACCGTTTCTGTTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR CCA 90 bp | CTAAAGCACAGGGATGGGGCTCATGATGTGTTTACAGAGCACACACCTTTCTCTCGGCACCTGCGGCGGTaGCACGTTGGATCCGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LKHRDGAHDVFTEHTPFSRHLRR*HVGSGL Trigger: AAGCCCGGATCCAACGTGCCACCGCCGCAGGTGCCG...AGAGAAAGGTGTGTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | GTCCAGAGTTCAATCTTTCCAGTCCCTCTCACAGCAGCACATCCTTTAGTCTCTGCCTCCCCCAGCACATaGGTGCCAGTCGGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VQSSIFPVPLTAAHPLVSASPST*VPVGAA Trigger: AGCTGCTCCGACTGGCACTCATGTGCTGGGGGAGGC...AGAGACTAAAGGATGTGCTGCTGTGAGAGGGACTGGAAAGATTGAACTCTGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | CTAAAGCACAGGGATGGGGCTCATGATGTGTTTACAGAGCACACACCTTTCTCTGCCTCCCCCAGCACATaGGTGCCAGTCGGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LKHRDGAHDVFTEHTPFSASPST*VPVGAA Trigger: AGCTGCTCCGACTGGCACTCATGTGCTGGGGGAGGC...AGAGAAAGGTGTGTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | CGTCTCAGGCACCAGGGGGTCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTTCTTGTAGAATTCCATaGGCCCCTCTAGCTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RLRHQGVSPDCAVFSSRPSCRIP*APLASP Trigger: AGGAGAAGCTAGAGGGGCTCATGGAATTCTACAAGA...AGGCCTGCTGCTGAACACAGCACAATCAGGTGAGACCCCCTGGTGCCTGAGACG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR CCA 90 bp | TCTCACCTGATTGTGCTGTGTTCAGCAGCAGGCCTGCACACTCGGTCCCTCGGATGGACAACTTGGCCTTaGATACAAACGCCTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SHLIVLCSAAGLHTRSLGWTTWP*IQTPAR Trigger: TCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCA...TCCGAGGGACCGAGTGTGCAGGCCTGCTGCTGAACACAGCACAATCAGGTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | ACACTCGGTCCCTCGGACCTGACTGCAGTCTTGCTCTCCTCTGTCCAGGTCCTCTTCGTACAGATGCTTTaGCTCTTTGACAAGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: TLGPSDLTAVLLSSVQVLFVQML*LFDKAV Trigger: GACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAA...GAGGACCTGGACAGAGGAGAGCAAGACTGCAGTCAGGTCCGAGGGACCGAGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | GAAGCACAGGCTCTAAAGCACAGGGATGGGGCTCATGATGTGTTTACAGAGCACTCTTGTAGAATTCCATaGGCCCCTCTAGCTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: EAQALKHRDGAHDVFTEHSCRIP*APLASP Trigger: AGGAGAAGCTAGAGGGGCTCATGGAATTCTACAAGA...GTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAGAGCCTGTGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR GCA 90 bp | TCAATCTTTCCAGTCCCTCTCACAGCAGCACATCCTTTAGTCTCTCGTCTCAGGGGCTTCATTGCTCATTaGCAGAGGGGTTCCTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SIFPVPLTAAHPLVSRLRGFIAH*QRGSFQ Trigger: CTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCC...CCTGAGACGAGAGACTAAAGGATGTGCTGCTGTGAGAGGGACTGGAAAGATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| 3UTR CAA 72 bp | TTTACAGAGCACACACCTTTCTCTCTGGTTTGCCTTTaGTGGGGTCTTGTTTGCAGTAGCTCAGCTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FTEHTPFSLVCL*WGLVCSSSAGE Trigger: CTCCCCAGCTGAGCTACTGCAAACAAGACCCCACAAAAGGCAAACCAGAGAGAAAGGTGTGTGCTCTGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | GTCCAGAGTTCAATCTTTCCAGTCCCTCTCACAGCAGCACATCCTTTAGTCTCTGATGCTTTGACTCTTTaGCAAGGCTGTCCACATCAC | + |
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Preference number: 4 (lower is better) Translates to: VQSSIFPVPLTAAHPLVSDALTL*QGCPHH Trigger: GTGATGTGGACAGCCTTGTCAAAGAGTCAAAGCATC...AGAGACTAAAGGATGTGCTGCTGTGAGAGGGACTGGAAAGATTGAACTCTGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR CCA 90 bp | GTGTTTACAGAGCACACACCTTTCTCTCTGGTTTGCCTTTTGTGGGGTCTTGTTTGGACAACTTGGCCTTaGATACAAACGCCTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VFTEHTPFSLVCLLWGLVWTTWP*IQTPAR Trigger: TCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCA...AACAAGACCCCACAAAAGGCAAACCAGAGAGAAAGGTGTGTGCTCTGTAAACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS-3UTR TCA 90 bp | CTAAAGCACAGGGATGGGGCTCATGATGTGTTTACAGAGCACACACCTTTCTCTTTCGTACAGATGCTTTaGCTCTTTGACAAGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LKHRDGAHDVFTEHTPFSFVQML*LFDKAV Trigger: GACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAA...AGAGAAAGGTGTGTGCTCTGTAAACACATCATGAGCCCCATCCCTGTGCTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CCA 90 bp | GCCAGAGGGGTTCCTTTCAGACTGGCCCGCACCTGCATAGCCCGTTaGGCAGAGATGCTTCCTGTGGTGGCCAGGATCCTGGCATCTTCT | + |
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Preference number: 5 (lower is better) Translates to: ARGVPFRLARTCIAR*AEMLPVVARILASS Trigger: AGAAGATGCCAGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTATGCAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 90 bp | CAGCCGACTCTGACGCAGACCCTTCGTACAGATGCTTTGACTCTTTaGCAAGGCTGTCCACATCACTCCAGAGGGCGGCACCTGCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: QPTLTQTLRTDALTL*QGCPHHSRGRHLRR Trigger: CCGCCGCAGGTGCCGCCCTCTGGAGTGATGTGGACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAAGGGTCTGCGTCAGAGTCGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 90 bp | GTGCCAGAAAGAGACCAAGGAGGCTCAGGATGTCAGAGGCAGCACTaGAGGAGTCAGCCACCACGTTGGAGATGGTGCAGCCCCTGTGTA | + |
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Preference number: 5 (lower is better) Translates to: VPERDQGGSGCQRQH*RSQPPRWRWCSPCV Trigger: TACACAGGGGCTGCACCATCTCCAACGTGGTGGCTGACTCCTTCAGTGCTGCCTCTGACATCCTGAGCCTCCTTGGTCTCTTTCTGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS GCA 90 bp | TGGCAATCCTATCCACACTTGTGCCAGCCTCCCCCAGCACATGAGTaGCAGTCGGAGCAGCTTCAACTTCATCCAAAACCCTGCTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: WQSYPHLCQPPPAHE*QSEQLQLHPKPCLF Trigger: AAACAAGCAGGGTTTTGGATGAAGTTGAAGCTGCTCCGACTGGCACTCATGTGCTGGGGGAGGCTGGCACAAGTGTGGATAGGATTGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 90 bp | CGAGGAAAGACTTTCAAAAACTTCTCCCTGCCTTTCAGACCTTTTTaGAGTCTGCCTCTGTCTGCTATGGCCAAGAGCGCTGTCAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGKTFKNFSLPFRPF*SLPLSAMAKSAVSS Trigger: GGAACTGACAGCGCTCTTGGCCATAGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGGGAGAAGTTTTTGAAAGTCTTTCCTCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 72 bp | ATCACTCCAGAGGGCGGCACCTGCGGCGGTGGCACGTaGGATCCGGGCTTCATTGCTCATTGCCAGAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: ITPEGGTCGGGT*DPGFIAHCQRG Trigger: ACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCACCGCCGCAGGTGCCGCCCTCTGGAGTGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CAA 90 bp | GCTGTCCACATCACTCCAGAGGGCGGCACCTGCGGCGGTGGCACGTaGGATCCGGGCTTCATTGCTCATTGCCAGAGGGGTTCCTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: AVHITPEGGTCGGGT*DPGFIAHCQRGSFQ Trigger: CTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCACCGCCGCAGGTGCCGCCCTCTGGAGTGATGTGGACAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS GCA 72 bp | GGCGGTGGCACGTTGGATCCGGGCTTCATTGCTCATTaGCAGAGGGGTTCCTTTCAGACTGGCCCGCACCTG | + |
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Preference number: 6 (lower is better) Translates to: GGGTLDPGFIAH*QRGSFQTGPHL Trigger: CAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCACCGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CAA 72 bp | GCACCTGCGGCGGTGGCACGTTGGATCCGGGCTTCATaGCTCATTGCCAGAGGGGTTCCTTTCAGACTGGCC | + |
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Preference number: 6 (lower is better) Translates to: APAAVARWIRAS*LIARGVPFRLA Trigger: GGCCAGTCTGAAAGGAACCCCTCTGGCAATGAGCAATGAAGCCCGGATCCAACGTGCCACCGCCGCAGGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CAA 90 bp | TGCCAGAGGGGTTCCTTTCAGACTGGCCCGCACCTGCATAGCCCGTaGGGCAGAGATGCTTCCTGTGGTGGCCAGGATCCTGGCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: CQRGSFQTGPHLHSP*GRDASCGGQDPGIF Trigger: GAAGATGCCAGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTATGCAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CCA 72 bp | GTTCCTTTCAGACTGGCCCGCACCTGCATAGCCCGTTaGGCAGAGATGCTTCCTGTGGTGGCCAGGATCCTG | + |
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Preference number: 6 (lower is better) Translates to: VPFRLARTCIAR*AEMLPVVARIL Trigger: CAGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTATGCAGGTGCGGGCCAGTCTGAAAGGAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CAA 72 bp | GGTTCCTTTCAGACTGGCCCGCACCTGCATAGCCCGTaGGGCAGAGATGCTTCCTGTGGTGGCCAGGATCCT | + |
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Preference number: 6 (lower is better) Translates to: GSFQTGPHLHSP*GRDASCGGQDP Trigger: AGGATCCTGGCCACCACAGGAAGCATCTCTGCCCAACGGGCTATGCAGGTGCGGGCCAGTCTGAAAGGAACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CCA 72 bp | ATGGCCAAGAGCGCTGTCAGTTCCCTCAGAGCTTTGTaGAGGGCCACTGCTCTCTCCCTGGACAACTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: MAKSAVSSLRAL*RATALSLDNLA Trigger: GGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGCTCTGAGGGAACTGACAGCGCTCTTGGCCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS TCA 72 bp | AGAGACCAAGGAGGCTCAGGATGTCAGAGGCAGCACTaGAGGAGTCAGCCACCACGTTGGAGATGGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RDQGGSGCQRQH*RSQPPRWRWCS Trigger: GCTGCACCATCTCCAACGTGGTGGCTGACTCCTTCAGTGCTGCCTCTGACATCCTGAGCCTCCTTGGTCTCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CCA 72 bp | GGAGGGCCACTGCTCTCTCCCTGGACAACTTGGCCTTaGATACAAACGCCTGCCAGACTCCATCTTCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GGPLLSPWTTWP*IQTPARLHLQP Trigger: TGGCTGAAGATGGAGTCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CCA 72 bp | CCCTCAGAGCTTTGTGGAGGGCCACTGCTCTCTCCCTaGACAACTTGGCCTTGGATACAAACGCCTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PSELCGGPLLSP*TTWPWIQTPAR Trigger: TCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGCTCTGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 72 bp | TGGAGGGCCACTGCTCTCTCCCTGGACAACTTGGCCTaGGATACAAACGCCTGCCAGACTCCATCTTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: WRATALSLDNLA*DTNACQTPSSA Trigger: GGCTGAAGATGGAGTCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 72 bp | GCTATGGCCAAGAGCGCTGTCAGTTCCCTCAGAGCTTaGTGGAGGGCCACTGCTCTCTCCCTGGACAACTTG | + |
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Preference number: 6 (lower is better) Translates to: AMAKSAVSSLRA*WRATALSLDNL Trigger: CAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGCTCTGAGGGAACTGACAGCGCTCTTGGCCATAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 72 bp | GCTTTGTGGAGGGCCACTGCTCTCTCCCTGGACAACTaGGCCTTGGATACAAACGCCTGCCAGACTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: ALWRATALSLDN*ALDTNACQTPS Trigger: AGATGGAGTCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 90 bp | CTTCCTGTGGTGGCCAGGATCCTGGCATCTTCTTCTAAACGAGGGTaGGCTCTAACCAGCCTGAGGGCATTCATGTGCTGCTCAAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LPVVARILASSSKRG*ALTSLRAFMCCSRA Trigger: AGCCCTTGAGCAGCACATGAATGCCCTCAGGCTGGTTAGAGCCAACCCTCGTTTAGAAGAAGATGCCAGGATCCTGGCCACCACAGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 72 bp | GTTTCTCAGCGTGGTCAGCCAGGGCATGGAGCTGACTaGTATGCTCCACCAGCTCTGCTTTCAAGCGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: VSQRGQPGHGAD*YAPPALLSSEE Trigger: TTCCTCGCTTGAAAGCAGAGCTGGTGGAGCATATCAGTCAGCTCCATGCCCTGGCTGACCACGCTGAGAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 72 bp | CTGACGCAGACCCTTCGTACAGATGCTTTGACTCTTTaGCAAGGCTGTCCACATCACTCCAGAGGGCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: LTQTLRTDALTL*QGCPHHSRGRH Trigger: GTGCCGCCCTCTGGAGTGATGTGGACAGCCTTGTCAAAGAGTCAAAGCATCTGTACGAAGGGTCTGCGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS GCA 72 bp | CTCTCCCTGGACAACTTGGCCTTGGATACAAACGCCTaGCAGACTCCATCTTCAGCCACCAGGCTATACAGG | + |
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Preference number: 6 (lower is better) Translates to: LSLDNLALDTNA*QTPSSATRLYR Trigger: CCTGTATAGCCTGGTGGCTGAAGATGGAGTCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS GCA 72 bp | CGAGGGTTGGCTCTAACCAGCCTGAGGGCATTCATGTaGTGCTCAAGGGCTTCCAGGTCTCTAGTGATGTCT | + |
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Preference number: 6 (lower is better) Translates to: RGLALTSLRAFM*CSRASRSLVMS Trigger: AGACATCACTAGAGACCTGGAAGCCCTTGAGCAGCACATGAATGCCCTCAGGCTGGTTAGAGCCAACCCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS CCA 72 bp | CTTTGTGGAGGGCCACTGCTCTCTCCCTGGACAACTTaGCCTTGGATACAAACGCCTGCCAGACTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LCGGPLLSPWTT*PWIQTPARLHL Trigger: AAGATGGAGTCTGGCAGGCGTTTGTATCCAAGGCCAAGTTGTCCAGGGAGAGAGCAGTGGCCCTCCACAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS TCA 72 bp | TGTAGTTTCTCAGCGTGGTCAGCCAGGGCATGGAGCTaGCTGATATGCTCCACCAGCTCTGCTTTCAAGCGA | + |
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Preference number: 6 (lower is better) Translates to: CSFSAWSARAWS*LICSTSSAFKR Trigger: TCGCTTGAAAGCAGAGCTGGTGGAGCATATCAGTCAGCTCCATGCCCTGGCTGACCACGCTGAGAAACTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS TCA 72 bp | ATCCTATCCACACTTGTGCCAGCCTCCCCCAGCACATaGGTGCCAGTCGGAGCAGCTTCAACTTCATCCAAA | + |
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Preference number: 6 (lower is better) Translates to: ILSTLVPASPST*VPVGAASTSSK Trigger: TTTGGATGAAGTTGAAGCTGCTCCGACTGGCACTCATGTGCTGGGGGAGGCTGGCACAAGTGTGGATAGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 |
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| CDS GCA 72 bp | CCTGCCTTTCAGACCTTTTTGAAGTCTGCCTCTGTCTaGTATGGCCAAGAGCGCTGTCAGTTCCCTCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: PAFQTFLKSASV*YGQERCQFPQS Trigger: GCTCTGAGGGAACTGACAGCGCTCTTGGCCATAGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CCA 72 bp | CTTTCAGACCTTTTTGAAGTCTGCCTCTGTCTGCTATaGCCAAGAGCGCTGTCAGTTCCCTCAGAGCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: LSDLFEVCLCLL*PRALSVPSELC Trigger: ACAAAGCTCTGAGGGAACTGACAGCGCTCTTGGCCATAGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS GCA 72 bp | AAAACTTCTCCCTGCCTTTCAGACCTTTTTGAAGTCTaGCTCTGTCTGCTATGGCCAAGAGCGCTGTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: KTSPCLSDLFEV*LCLLWPRALSV Trigger: AACTGACAGCGCTCTTGGCCATAGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGGGAGAAGTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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| CDS CAA 72 bp | GACTTTCAAAAACTTCTCCCTGCCTTTCAGACCTTTTaGAAGTCTGCCTCTGTCTGCTATGGCCAAGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: DFQKLLPAFQTF*KSASVCYGQER Trigger: GCGCTCTTGGCCATAGCAGACAGAGGCAGACTTCAAAAAGGTCTGAAAGGCAGGGAGAAGTTTTTGAAAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081776.11 ENSMUST00000089452.6 ENSMUST00000231161.2 |
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