RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APOL7E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071716

Ensembl transcript IDs: ENSMUST00000096358.6

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCTGTATAGAGCCTAGAAGGGATACAGTCAGGGACTCCCATGTGTaGATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACT +
Preference number: 1 (lower is better)
Translates to: GCIEPRRDTVRDSHV*MALSSTFPPPVLCT
Trigger: AGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTCTATACAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR GCA 72 bp GAGCCTAGAAGGGATACAGTCAGGGACTCCCATGTGTaGATGGCTCTGTCCAGCACATTCCCTCCCCCAGTC +
Preference number: 3 (lower is better)
Translates to: EPRRDTVRDSHV*MALSSTFPPPV
Trigger: GACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR TCA 72 bp ATAGGCAAAAGTAGGGCAGCAGGCAGAAGGGAGGCGTaGACGGTCACCGCGATTGTCCACTTGGCTGAACTG +
Preference number: 3 (lower is better)
Translates to: IGKSRAAGRREA*TVTAIVHLAEL
Trigger: CAGTTCAGCCAAGTGGACAATCGCGGTGACCGTTCACGCCTCCCTTCTGCCTGCTGCCCTACTTTTGCCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CCA 72 bp CTAGAAGGGATACAGTCAGGGACTCCCATGTGTGCATaGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCT +
Preference number: 3 (lower is better)
Translates to: LEGIQSGTPMCA*LCPAHSLPQSS
Trigger: AGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CCA 72 bp GTCAGGGTGGTTTATGGTCTTTGTCAGAATTCAGTGTaGGGAGGGGTAGGGGGATTCCTCTGGGAGCTGCTA +
Preference number: 3 (lower is better)
Translates to: VRVVYGLCQNSV*GGVGGFLWELL
Trigger: TAGCAGCTCCCAGAGGAATCCCCCTACCCCTCCCCACACTGAATTCTGACAAAGACCATAAACCACCCTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CCA 72 bp GCAAACTGCATGAGGATTTTTATTGATCCAACATATTaGGGACTCCCCTCTCAGCACACAGGCCAGAGGAGA +
Preference number: 3 (lower is better)
Translates to: ANCMRIFIDPTY*GLPSQHTGQRR
Trigger: TCTCCTCTGGCCTGTGTGCTGAGAGGGGAGTCCCCAATATGTTGGATCAATAAAAATCCTCATGCAGTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CCA 72 bp ATTAACGTCAGGGGAATTCTTGCAACAAGGTCAGGGTaGTTTATGGTCTTTGTCAGAATTCAGTGTGGGGAG +
Preference number: 3 (lower is better)
Translates to: INVRGILATRSG*FMVFVRIQCGE
Trigger: CTCCCCACACTGAATTCTGACAAAGACCATAAACCACCCTGACCTTGTTGCAAGAATTCCCCTGACGTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTAGTCACAGCCGCTGCTaGCCCCAGCCCCAAGCCAGT +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTSHSRC*PQPQAS
Trigger: ACTGGCTTGGGGCTGGGGGCAGCAGCGGCTGTGACT...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTACTAGTCACAGCCGCTaGTGCCCCCAGCCCCAAGCC +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTTSHSR*CPQPQA
Trigger: GGCTTGGGGCTGGGGGCAGCAGCGGCTGTGACTAGT...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGGCTGGCCACCACCCGTaGGATGGTGCAGTCCCTGTG +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMAGHHP*DGAVPV
Trigger: CACAGGGACTGCACCATCTCACGGGTGGTGGCCAGC...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGGGCGTGGAGCATCCTaGTGCTCTCCTCAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTGRGAS*CSPQAP
Trigger: TGGAGCTTGAGGAGAGCATCAGGATGCTCCACGCCC...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTCCCCAAGCCAGTGGCTaGCAATGCCAGACTGACTCC +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTPQASG*QCQTDS
Trigger: GGAGTCAGTCTGGCATTGTCAGCCACTGGCTTGGGG...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGCTCCAGACACAGCACTaGTGGAGCTGGCCACCACCC +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMLQTQH*WSWPPP
Trigger: GGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAG...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGGAAACCTGTGGTGGCTaGACCCATGATCCGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMETCGG*THDPGS
Trigger: GGAGCCCGGATCATGGGTGCAGCCACCACAGGTTTC...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGCTGATGCCGCAGCTCTaGAGCAGACTCAGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMLMPQL*SRLSLC
Trigger: GCAAAGGCTGAGTCTGCTGCAGAGCTGCGGCATCAG...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTCAGCCACAGTCTCAATaGAGCATTCTCTGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTQPQSQ*SILCLG
Trigger: CCCCAGACAGAGAATGCTTCATTGAGACTGTGGCTG...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGCTGACAATGCCAGACTaGCTCCTGCTGTCACAGGTG +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMLTMPD*LLLSQV
Trigger: CACCTGTGACAGCAGGAGTCAGTCTGGCATTGTCAG...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTTCCTGCTGTCACAGGTaGCAGAGACAGACCAAGGAT +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTSCCHR*QRQTKD
Trigger: ATCCTTGGTCTGTCTCTGGCACCTGTGACAGCAGGA...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGTGCCAGACTGACTCCTaGTGTCACAGGTGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMCQTDS*CHRCQR
Trigger: TCTCTGGCACCTGTGACAGCAGGAGTCAGTCTGGCA...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGGCTGCAGGTCCTCTGTaGTTATCACATCCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMAAGPL*LSHPGG
Trigger: ACCTCCTGGATGTGATAAGCACAGAGGACCTGCAGC...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGATGGTGCAGTCCCTGTaGACCTTGTCAACCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMMVQSL*TLSTLS
Trigger: AGACAAGGTTGACAAGGTGCACAGGGACTGCACCAT...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGGGCTCCTTTGGTCATTaGCAGAGCAGTACCTCCAAA +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMGSFGH*QSSTSK
Trigger: TTTGGAGGTACTGCTCTGGCAATGACCAAAGGAGCC...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTTTCTCCATCAGGATCTaGAAAGATCTCTGCAAGAGC +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTFSIRI*KDLCKS
Trigger: GCTCTTGCAGAGATCTTTTCAGATCCTGATGGAGAA...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTAGTCTGGGACCACTCTaGTCCAAAACTTCTTTCATG +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTSLGPL*SKTSFM
Trigger: CATGAAAGAAGTTTTGGATCAGAGTGGTCCCAGACT...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGGACAAATCAACTTCTaGCACAAAGTGTTTCCAGGT +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTGQINF*HKVFPG
Trigger: ACCTGGAAACACTTTGTGGCAGAAGTTGATTTGTCC...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGAGCAGACTCAGCCTTTaGTCCTTCATGCAAATGCTT +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMSRLSL*SFMQML
Trigger: AAGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCT...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR GCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGGCTCCTTCATGCAAATaGTTTGAGTCTCCTACAAAG +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMAPSCK*FESPTK
Trigger: CTTTGTAGGAGACTCAAAGCATTTGCATGAAGGAGC...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CCA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGTGTGTCTTTGTTGGTTaGTACCAACTTGCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMCVFVG*YQLAGF
Trigger: AAAGCCAGCAAGTTGGTACCAACCAACAAAGACACA...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR TCA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTTGGCTTTGGTCAGTTTaGTGGCATGAATATTATTCT +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTWLWSV*WHEYYS
Trigger: AGAATAATATTCATGCCATCAAACTGACCAAAGCCA...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CAA 72 bp CTATTAACATCACAGCTATTAACGTCAGGGGAATTCTaGCAACAAGGTCAGGGTGGTTTATGGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: LLTSQLLTSGEF*QQGQGGLWSLS
Trigger: TGACAAAGACCATAAACCACCCTGACCTTGTTGCAAGAATTCCCCTGACGTTAATAGCTGTGATGTTAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
3UTR CAA 72 bp CTCACTTTGCTTGCCCCCATGGTGGGTTATTATGATTaGGTCAGCAAAGTAATAATACATTTTGAACTTATG +
Preference number: 4 (lower is better)
Translates to: LTLLAPMVGYYD*VSKVIIHFELM
Trigger: CATAAGTTCAAAATGTATTATTACTTTGCTGACCAAATCATAATAACCCACCATGGGGGCAAGCAAAGTGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp GCACTGCTGGAGCTGGCCACCACCCGTGAGATGGTGCAGTCCCTGTaGACCTTGTCAACCTTGTCTGCCAGGGCGTGGAGCATCCTGATG +
Preference number: 5 (lower is better)
Translates to: ALLELATTREMVQSL*TLSTLSARAWSILM
Trigger: CATCAGGATGCTCCACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp CTCCAGACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATGGTaGAGTCCCTGTGCACCTTGTCAACCTTGTCTGCCAGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: LQTQHCWSWPPPVRW*SPCAPCQPCLPGRG
Trigger: TCCACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 90 bp GGACTCCAGACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATaGTGCAGTCCCTGTGCACCTTGTCAACCTTGTCTGCCAGGGCGT +
Preference number: 5 (lower is better)
Translates to: GLQTQHCWSWPPPVR*CSPCAPCQPCLPGR
Trigger: ACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 90 bp ACAGACCAAGGATGGTCAGGACTCCAGACACAGCACTGCTGGAGCTaGCCACCACCCGTGAGATGGTGCAGTCCCTGTGCACCTTGTCAA +
Preference number: 5 (lower is better)
Translates to: TDQGWSGLQTQHCWS*PPPVRWCSPCAPCQ
Trigger: TTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCCTGACCATCCTTGGTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp GAAACCTGTGGTGGCTGCACCCATGATCCGGGCTCCTTTGGTCATTaGCAGAGCAGTACCTCCAAAGGCTTCCTTCACTTGTTTAGTGGT +
Preference number: 5 (lower is better)
Translates to: ETCGGCTHDPGSFGH*QSSTSKGFLHLFSG
Trigger: ACCACTAAACAAGTGAAGGAAGCCTTTGGAGGTACTGCTCTGGCAATGACCAAAGGAGCCCGGATCATGGGTGCAGCCACCACAGGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp TACAAAGCTAACTATATCCAGCAGGAGGAAGAAACCTGTGGTGGCTaGACCCATGATCCGGGCTCCTTTGGTCATTGCCAGAGCAGTACC +
Preference number: 5 (lower is better)
Translates to: YKANYIQQEEETCGG*THDPGSFGHCQSST
Trigger: GGTACTGCTCTGGCAATGACCAAAGGAGCCCGGATCATGGGTGCAGCCACCACAGGTTTCTTCCTCCTGCTGGATATAGTTAGCTTTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CAA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGTTGGTTGGTACCAACTaGCTGGCTTTAGCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMLVGTN*LALASA
Trigger: TGCTGAAGCTAAAGCCAGCAAGTTGGTACCAACCAA...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CAA 90 bp TGTGTGCATGGCTCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTTTGTGTCTTTGTTGGTaGGTACCAACTTGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: CVHGSVQHIPSPSPLHYTLCLCW*VPTCWL
Trigger: AAGCCAGCAAGTTGGTACCAACCAACAAAGACACAA...AGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGAGCCATGCACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp AGCTTCTCGCAAGGCAGTTTCCTCTTCCCTGGACAAATCAACTTCTaGCACAAAGTGTTTCCAGGTTTCCTCTTCTGTCAGCAGGAGCTG +
Preference number: 5 (lower is better)
Translates to: SFSQGSFLFPGQINF*HKVFPGFLFCQQEL
Trigger: CAGCTCCTGCTGACAGAAGAGGAAACCTGGAAACACTTTGTGGCAGAAGTTGATTTGTCCAGGGAAGAGGAAACTGCCTTGCGAGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp TGCCGCAGCTCTGCAGCAGACTCAGCCTTTGCTCCTTCATGCAAATaGTTTGAGTCTCCTACAAAGCTAACTATATCCAGCAGGAGGAAG +
Preference number: 5 (lower is better)
Translates to: CRSSAADSAFAPSCK*FESPTKLTISSRRK
Trigger: CTTCCTCCTGCTGGATATAGTTAGCTTTGTAGGAGACTCAAAGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCTGCAGAGCTGCGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CAA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGTTCATTGTGTCTTTGTaGGTTGGTACCAACTTGCTG +
Preference number: 5 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMFIVSL*VGTNLL
Trigger: CAGCAAGTTGGTACCAACCAACAAAGACACAATGAA...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CAA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGCTTTCATGCCCTTCATaGTGTCTTTGTTGGTTGGTA +
Preference number: 5 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMLSCPS*CLCWLV
Trigger: TACCAACCAACAAAGACACAATGAAGGGCATGAAAG...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS-3UTR CAA 90 bp TCTGTCCAGCACATTCCCTCCCCCAGTCCTCTGCACTACACTGAAGGGGAAATGAAAGGCTTCCTTCACTaGTTTAGTGGTTTCTGTTGT +
Preference number: 5 (lower is better)
Translates to: SVQHIPSPSPLHYTEGEMKGFLH*FSGFCC
Trigger: ACAACAGAAACCACTAAACAAGTGAAGGAAGCCTTT...CATTTCCCCTTCAGTGTAGTGCAGAGGACTGGGGGAGGGAATGTGCTGGACAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 90 bp AAAAGATCTCTGCAAGAGCTTCTCGCAAGGCAGTTTCCTCTTCCCTaGACAAATCAACTTCTGCCACAAAGTGTTTCCAGGTTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: KRSLQELLARQFPLP*TNQLLPQSVSRFPL
Trigger: AAGAGGAAACCTGGAAACACTTTGTGGCAGAAGTTGATTTGTCCAGGGAAGAGGAAACTGCCTTGCGAGAAGCTCTTGCAGAGATCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 90 bp AAGGCATCTTCCTCTTTCCTCTCGTTCTTGTCCTGCAGGTCATTTTaGAGCTCATCTTCATCTTCTCCATCAGGATCTGAAAAGATCTCT +
Preference number: 5 (lower is better)
Translates to: KASSSFLSFLSCRSF*SSSSSSPSGSEKIS
Trigger: AGAGATCTTTTCAGATCCTGATGGAGAAGATGAAGATGAGCTCCAAAATGACCTGCAGGACAAGAACGAGAGGAAAGAGGAAGATGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 90 bp ATAAGAAAAGAAGTCTGGGACCACTCTGATCCAAAACTTCTTTCATaGCCTTCATTGTGTCTTTGTTGGTTGGTACCAACTTGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: IRKEVWDHSDPKLLS*PSLCLCWLVPTCWL
Trigger: AAGCCAGCAAGTTGGTACCAACCAACAAAGACACAATGAAGGGCATGAAAGAAGTTTTGGATCAGAGTGGTCCCAGACTTCTTTTCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS TCA 90 bp GCATTAGTTACTAGGCTAGGGTTGGCTTTGGTCAGTTTGATGGCATaGATATTATTCTTGATGTTTTTCAGTTTCTTGAAGGAATTCATG +
Preference number: 5 (lower is better)
Translates to: ALVTRLGLALVSLMA*ILFLMFFSFLKEFM
Trigger: CATGAATTCCTTCAAGAAACTGAAAAACATCAAGAATAATATTCATGCCATCAAACTGACCAAAGCCAACCCTAGCCTAGTAACTAATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CAA 90 bp CTGGAGCTGGCCACCACCCGTGAGATGGTGCAGTCCCTGTGCACCTaGTCAACCTTGTCTGCCAGGGCGTGGAGCATCCTGATGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LELATTREMVQSLCT*STLSARAWSILMLS
Trigger: GGAGAGCATCAGGATGCTCCACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 72 bp GGATGGTCAGGACTCCAGACACAGCACTGCTGGAGCTaGCCACCACCCGTGAGATGGTGCAGTCCCTGTGCA +
Preference number: 6 (lower is better)
Translates to: GWSGLQTQHCWS*PPPVRWCSPCA
Trigger: TGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCCTGACCATCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 72 bp GACCAAGGATGGTCAGGACTCCAGACACAGCACTGCTaGAGCTGGCCACCACCCGTGAGATGGTGCAGTCCC +
Preference number: 6 (lower is better)
Translates to: DQGWSGLQTQHC*SWPPPVRWCSP
Trigger: GGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCCTGACCATCCTTGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS TCA 72 bp CCCCCAGCCCCAAGCCAGTGGCTGACAATGCCAGACTaGCTCCTGCTGTCACAGGTGCCAGAGACAGACCAA +
Preference number: 6 (lower is better)
Translates to: PPAPSQWLTMPD*LLLSQVPETDQ
Trigger: TTGGTCTGTCTCTGGCACCTGTGACAGCAGGAGTCAGTCTGGCATTGTCAGCCACTGGCTTGGGGCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 72 bp ACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATaGTGCAGTCCCTGTGCACCTTGTCAACCTTGTCTG +
Preference number: 6 (lower is better)
Translates to: TQHCWSWPPPVR*CSPCAPCQPCL
Trigger: CAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CAA 72 bp CGTGAGATGGTGCAGTCCCTGTGCACCTTGTCAACCTaGTCTGCCAGGGCGTGGAGCATCCTGATGCTCTCC +
Preference number: 6 (lower is better)
Translates to: REMVQSLCTLST*SARAWSILMLS
Trigger: GGAGAGCATCAGGATGCTCCACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp GATGGTGCAGTCCCTGTGCACCTTGTCAACCTTGTCTaGCAGGGCGTGGAGCATCCTGATGCTCTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: DGAVPVHLVNLV*QGVEHPDALLK
Trigger: CTTGAGGAGAGCATCAGGATGCTCCACGCCCTGGCAGACAAGGTTGACAAGGTGCACAGGGACTGCACCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp GGTGGCTGCACCCATGATCCGGGCTCCTTTGGTCATTaGCAGAGCAGTACCTCCAAAGGCTTCCTTCACTTG +
Preference number: 6 (lower is better)
Translates to: GGCTHDPGSFGH*QSSTSKGFLHL
Trigger: CAAGTGAAGGAAGCCTTTGGAGGTACTGCTCTGGCAATGACCAAAGGAGCCCGGATCATGGGTGCAGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp AACTATATCCAGCAGGAGGAAGAAACCTGTGGTGGCTaGACCCATGATCCGGGCTCCTTTGGTCATTGCCAG +
Preference number: 6 (lower is better)
Translates to: NYIQQEEETCGG*THDPGSFGHCQ
Trigger: CTGGCAATGACCAAAGGAGCCCGGATCATGGGTGCAGCCACCACAGGTTTCTTCCTCCTGCTGGATATAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp TTTCCTCTTCTGTCAGCAGGAGCTGCAGGTCCTCTGTaGTTATCACATCCAGGAGGTACTCAGCCACAGTCT +
Preference number: 6 (lower is better)
Translates to: FPLLSAGAAGPL*LSHPGGTQPQS
Trigger: AGACTGTGGCTGAGTACCTCCTGGATGTGATAAGCACAGAGGACCTGCAGCTCCTGCTGACAGAAGAGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp GTGCCACGGGTCATTTTGGATCTCTTCTTCATCTTCTaGATCAGTATCAGCTACGGTCTTACCCAGGGCTTC +
Preference number: 6 (lower is better)
Translates to: VPRVILDLFFIF*ISISYGLTQGF
Trigger: GAAGCCCTGGGTAAGACCGTAGCTGATACTGATGCAGAAGATGAAGAAGAGATCCAAAATGACCCGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CAA 90 bp TCCTTTGGTCATTGCCAGAGCAGTACCTCCAAAGGCTTCCTTCACTaGTTTAGTGGTTTCTGTTGTTGTCTTTCCTGTGGTCATGAGGCG +
Preference number: 6 (lower is better)
Translates to: SFGHCQSSTSKGFLH*FSGFCCCLSCGHEA
Trigger: CGCCTCATGACCACAGGAAAGACAACAACAGAAACCACTAAACAAGTGAAGGAAGCCTTTGGAGGTACTGCTCTGGCAATGACCAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS GCA 72 bp TCTGCAGCAGACTCAGCCTTTGCTCCTTCATGCAAATaGTTTGAGTCTCCTACAAAGCTAACTATATCCAGC +
Preference number: 6 (lower is better)
Translates to: SAADSAFAPSCK*FESPTKLTISS
Trigger: GCTGGATATAGTTAGCTTTGTAGGAGACTCAAAGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCTGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CCA 72 bp TCCTCTTTCCTCTCGTTCTTGTCCTGCAGGTCATTTTaGAGCTCATCTTCATCTTCTCCATCAGGATCTGAA +
Preference number: 6 (lower is better)
Translates to: SSFLSFLSCRSF*SSSSSSPSGSE
Trigger: TTCAGATCCTGATGGAGAAGATGAAGATGAGCTCCAAAATGACCTGCAGGACAAGAACGAGAGGAAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CAA 72 bp CATTGCCAGAGCAGTACCTCCAAAGGCTTCCTTCACTaGTTTAGTGGTTTCTGTTGTTGTCTTTCCTGTGGT +
Preference number: 6 (lower is better)
Translates to: HCQSSTSKGFLH*FSGFCCCLSCG
Trigger: ACCACAGGAAAGACAACAACAGAAACCACTAAACAAGTGAAGGAAGCCTTTGGAGGTACTGCTCTGGCAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS CAA 72 bp GACCACTCTGATCCAAAACTTCTTTCATGCCCTTCATaGTGTCTTTGTTGGTTGGTACCAACTTGCTGGCTT +
Preference number: 6 (lower is better)
Translates to: DHSDPKLLSCPS*CLCWLVPTCWL
Trigger: AAGCCAGCAAGTTGGTACCAACCAACAAAGACACAATGAAGGGCATGAAAGAAGTTTTGGATCAGAGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6
CDS TCA 72 bp GAATTCATGGATAAGAAAAGAAGTCTGGGACCACTCTaGTCCAAAACTTCTTTCATGCCCTTCATTGTGTCT +
Preference number: 6 (lower is better)
Translates to: EFMDKKRSLGPL*SKTSFMPFIVS
Trigger: AGACACAATGAAGGGCATGAAAGAAGTTTTGGATCAGAGTGGTCCCAGACTTCTTTTCTTATCCATGAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096358.6