RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for APOL7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068252

Ensembl transcript IDs: ENSMUST00000089469.7, ENSMUST00000229434.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCTGTATAGAGCCTAGAAGGGATACAGTCAGGGACTCCCATGTGTaGATGGCTCTGTCCAGCACACTCCCTCCCCCAGTCCTCTGCGCT +
Preference number: 1 (lower is better)
Translates to: GCIEPRRDTVRDSHV*MALSSTLPPPVLCA
Trigger: AGCGCAGAGGACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTCTATACAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR CCA 90 bp TGCAACAAGGTCAGGGTGGTTTATGGTCTTTGTCAGAATTCAGTGTaGGGAGGGGTAGGGGGATTCCTCTGGGAGCTGCTATCTTGTTAT +
Preference number: 1 (lower is better)
Translates to: CNKVRVVYGLCQNSV*GGVGGFLWELLSCY
Trigger: ATAACAAGATAGCAGCTCCCAGAGGAATCCCCCTACCCCTCCCCACACTGAATTCTGACAAAGACCATAAACCACCCTGACCTTGTTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR GCA 90 bp GTAAGGGGCAGATTTGAGCAACAGGGCAGCTGTCTTATTTTCATTGCTACAGCAAGGGACTCCCATGTGTaGATGGCTCTGTCCAGCACA +
Preference number: 2 (lower is better)
Translates to: VRGRFEQQGSCLIFIATARDSHV*MALSST
Trigger: TGTGCTGGACAGAGCCATGCACACATGGGAGTCCCT...TGCTGTAGCAATGAAAATAAGACAGCTGCCCTGTTGCTCAAATCTGCCCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR GCA 90 bp CCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACAAAGAAAGAACACAATGATTCCTCTGGGAGCTaGTATCTTGTTATGGTTATT +
Preference number: 2 (lower is better)
Translates to: PLSAHRPEERPRTKKEHNDSSGS*YLVMVI
Trigger: AATAACCATAACAAGATAGCAGCTCCCAGAGGAATC...ATTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGTGTGCTGAGAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR TCA 90 bp CCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACAAAGAAAGAACACAATCATGGTGGGTTATTATaGTTTGGTCAGCAAAGTAAT +
Preference number: 2 (lower is better)
Translates to: PLSAHRPEERPRTKKEHNHGGLL*FGQQSN
Trigger: ATTACTTTGCTGACCAAATCATAATAACCCACCATG...ATTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGTGTGCTGAGAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR TCA 90 bp CAGCTATTAACGTCAGGGGAATTCTTGCAACAAGGTCAGGGTGGTTTATGGTCTCTACACTATAGCCAGTaGTGGAGAAGGTTAACTCTA +
Preference number: 2 (lower is better)
Translates to: QLLTSGEFLQQGQGGLWSLHYSQ*WRRLTL
Trigger: TAGAGTTAACCTTCTCCATCACTGGCTATAGTGTAG...AGACCATAAACCACCCTGACCTTGTTGCAAGAATTCCCCTGACGTTAATAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR CAA 90 bp AGTCCTTTTCGAAGGGGGAAGGTACTGGGTGGTCTTGAATTAATTTaGGATATTACAATTCTTCCCTTCACCATCTTCTGGATGGCAATG +
Preference number: 2 (lower is better)
Translates to: SPFRRGKVLGGLELI*DITILPFTIFWMAM
Trigger: CATTGCCATCCAGAAGATGGTGAAGGGAAGAATTGTAATATCCAAAATTAATTCAAGACCACCCAGTACCTTCCCCCTTCGAAAAGGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR GCA 72 bp GAGCCTAGAAGGGATACAGTCAGGGACTCCCATGTGTaGATGGCTCTGTCCAGCACACTCCCTCCCCCAGTC +
Preference number: 3 (lower is better)
Translates to: EPRRDTVRDSHV*MALSSTLPPPV
Trigger: GACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR CCA 72 bp CTAGAAGGGATACAGTCAGGGACTCCCATGTGTGCATaGCTCTGTCCAGCACACTCCCTCCCCCAGTCCTCT +
Preference number: 3 (lower is better)
Translates to: LEGIQSGTPMCA*LCPAHSLPQSS
Trigger: AGAGGACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACATGGGAGTCCCTGACTGTATCCCTTCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR CAA 90 bp GTAAGGGGCAGATTTGAGCAACAGGGCAGCTGTCTTATTTTCATTGCTACAGCAACCGCGATTGTCCACTaGGCTGAACTGCAAGGCTGT +
Preference number: 3 (lower is better)
Translates to: VRGRFEQQGSCLIFIATATAIVH*AELQGC
Trigger: ACAGCCTTGCAGTTCAGCCAAGTGGACAATCGCGGT...TGCTGTAGCAATGAAAATAAGACAGCTGCCCTGTTGCTCAAATCTGCCCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
3UTR-3UTR CAA 90 bp GTAAGGGGCAGATTTGAGCAACAGGGCAGCTGTCTTATTTTCATTGCTACAGCAAAACTGTTTTTACATTaGTTTAGTCAGCCAGCTTCC +
Preference number: 3 (lower is better)
Translates to: VRGRFEQQGSCLIFIATAKLFLH*FSQPAS
Trigger: GGAAGCTGGCTGACTAAACAAATGTAAAAACAGTTT...TGCTGTAGCAATGAAAATAAGACAGCTGCCCTGTTGCTCAAATCTGCCCCTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CCA 90 bp TGTGTGCATGGCTCTGTCCAGCACACTCCCTCCCCCAGTCCTCTGCGCTACACTTTATCTGCCAGGGCGTaGAGCATCCTGATGCTCTCC +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHTPSPSPLRYTLSARA*SILMLS
Trigger: GGAGAGCATCAGGATGCTCCACGCCCTGGCAGATAA...AGTGTAGCGCAGAGGACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CCA 90 bp TGTGTGCATGGCTCTGTCCAGCACACTCCCTCCCCCAGTCCTCTGCGCTACACTGAGACAGACCAAGGATaGTCAGGACTCCAGACACAG +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHTPSPSPLRYTETDQG*SGLQTQ
Trigger: CTGTGTCTGGAGTCCTGACCATCCTTGGTCTGTCTC...AGTGTAGCGCAGAGGACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CCA 90 bp TGTGTGCATGGCTCTGTCCAGCACACTCCCTCCCCCAGTCCTCTGCGCTACACTTGTGTCTTTGTTGGTTaGCACCAGCTTGCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: CVHGSVQHTPSPSPLRYTCVFVG*HQLAGF
Trigger: AAAGCCAGCAAGCTGGTGCCAACCAACAAAGACACA...AGTGTAGCGCAGAGGACTGGGGGAGGGAGTGTGCTGGACAGAGCCATGCACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR GCA 90 bp CCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACAAAGAAAGAACACAATATGGTGCAGTCCCTGTaGACCTTGTCAACCTTATCT +
Preference number: 4 (lower is better)
Translates to: PLSAHRPEERPRTKKEHNMVQSL*TLSTLS
Trigger: AGATAAGGTTGACAAGGTGCACAGGGACTGCACCAT...ATTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGTGTGCTGAGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CCA 90 bp CCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACAAAGAAAGAACACAATTCCTGCAGGTCATTTTaGAGCTCATCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: PLSAHRPEERPRTKKEHNSCRSF*SSSSSS
Trigger: AGAAGATGAAGATGAGCTCCAAAATGACCTGCAGGA...ATTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGTGTGCTGAGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CCA 90 bp GTAAGGGGCAGATTTGAGCAACAGGGCAGCTGTCTTATTTTCATTGCTACAGCACAGTTTCCTCTTCCCTaGACAAATCAACTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: VRGRFEQQGSCLIFIATAQFPLP*TNQLLP
Trigger: TGGCAGAAGTTGATTTGTCCAGGGAAGAGGAAACTG...TGCTGTAGCAATGAAAATAAGACAGCTGCCCTGTTGCTCAAATCTGCCCCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR TCA 90 bp GTAAGGGGCAGATTTGAGCAACAGGGCAGCTGTCTTATTTTCATTGCTACAGCATTTAGTGGTTTCTGTTaGTGTCTTTCCTGTGGTCAT +
Preference number: 4 (lower is better)
Translates to: VRGRFEQQGSCLIFIATAFSGFC*CLSCGH
Trigger: ATGACCACAGGAAAGACATCAACAGAAACCACTAAA...TGCTGTAGCAATGAAAATAAGACAGCTGCCCTGTTGCTCAAATCTGCCCCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS GCA 90 bp GCACTGCTGGAGCTGGCCACCACCCGTGAGATGGTGCAGTCCCTGTaGACCTTGTCAACCTTATCTGCCAGGGCGTGGAGCATCCTGATG +
Preference number: 5 (lower is better)
Translates to: ALLELATTREMVQSL*TLSTLSARAWSILM
Trigger: CATCAGGATGCTCCACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS GCA 90 bp CTCCAGACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATGGTaGAGTCCCTGTGCACCTTGTCAACCTTATCTGCCAGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: LQTQHCWSWPPPVRW*SPCAPCQPYLPGRG
Trigger: TCCACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS CCA 90 bp GGACTCCAGACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATaGTGCAGTCCCTGTGCACCTTGTCAACCTTATCTGCCAGGGCGT +
Preference number: 5 (lower is better)
Translates to: GLQTQHCWSWPPPVR*CSPCAPCQPYLPGR
Trigger: ACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS TCA 90 bp GGTCAGGACTCCAGACACAGCACTGCTGGAGCTGGCCACCACCCGTaGGATGGTGCAGTCCCTGTGCACCTTGTCAACCTTATCTGCCAG +
Preference number: 5 (lower is better)
Translates to: GQDSRHSTAGAGHHP*DGAVPVHLVNLICQ
Trigger: CTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTGGAGTCCTGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS-3UTR CAA 90 bp TCTGTCCAGCACACTCCCTCCCCCAGTCCTCTGCGCTACACTGAAGGGGAAATGTTGGTTGGCACCAGCTaGCTGGCTTTAGCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: SVQHTPSPSPLRYTEGEMLVGTS*LALASA
Trigger: TGCTGAAGCTAAAGCCAGCAAGCTGGTGCCAACCAA...CATTTCCCCTTCAGTGTAGCGCAGAGGACTGGGGGAGGGAGTGTGCTGGACAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS GCA 90 bp TACAAGGCTAACTATATCCAGCAGGAGGAAGAAACCTGTGGTGGCTaGACCCATGATCCGGGCTCCTTTGGTCATTGCCAGAGCAGTACC +
Preference number: 5 (lower is better)
Translates to: YKANYIQQEEETCGG*THDPGSFGHCQSST
Trigger: GGTACTGCTCTGGCAATGACCAAAGGAGCCCGGATCATGGGTGCAGCCACCACAGGTTTCTTCCTCCTGCTGGATATAGTTAGCCTTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS GCA 90 bp TGCCGCAGCTCTGCAGCAGACTCAGCCTTTGCTCCTTCATGCAAATaGTTTGAGTCTCCTACAAGGCTAACTATATCCAGCAGGAGGAAG +
Preference number: 5 (lower is better)
Translates to: CRSSAADSAFAPSCK*FESPTRLTISSRRK
Trigger: CTTCCTCCTGCTGGATATAGTTAGCCTTGTAGGAGACTCAAAGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCTGCAGAGCTGCGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CAA 90 bp CCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACAAAGAAAGAACACAATCTTTCATGCCCTTCATaGTGTCTTTGTTGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: PLSAHRPEERPRTKKEHNLSCPS*CLCWLA
Trigger: TGCCAACCAACAAAGACACAATGAAGGGCATGAAAG...ATTGTGTTCTTTCTTTGTTCTGGGTCTCTCCTCTGGCCTGTGTGCTGAGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CAA 90 bp CAGCTATTAACGTCAGGGGAATTCTTGCAACAAGGTCAGGGTGGTTTATGGTCTTTGTGTCTTTGTTGGTaGGCACCAGCTTGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: QLLTSGEFLQQGQGGLWSLCLCW*APACWL
Trigger: AAGCCAGCAAGCTGGTGCCAACCAACAAAGACACAA...AGACCATAAACCACCCTGACCTTGTTGCAAGAATTCCCCTGACGTTAATAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS TCA 90 bp CTGCAGGTCATTTTGGAGCTCATCTTCATCTTCTCCATCAGGATCTaGAAAGATCTCTGCAAGAGCTTCTCGCAAGGCAGTTTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: LQVILELIFIFSIRI*KDLCKSFSQGSFLF
Trigger: GAAGAGGAAACTGCCTTGCGAGAAGCTCTTGCAGAGATCTTTTCAGATCCTGATGGAGAAGATGAAGATGAGCTCCAAAATGACCTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS GCA 90 bp ATAAGAAAAGAAGTCTGGGACCACTCTGATCCAAAACTTCTTTCATaGCCTTCATTGTGTCTTTGTTGGTTGGCACCAGCTTGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: IRKEVWDHSDPKLLS*PSLCLCWLAPACWL
Trigger: AAGCCAGCAAGCTGGTGCCAACCAACAAAGACACAATGAAGGGCATGAAAGAAGTTTTGGATCAGAGTGGTCCCAGACTTCTTTTCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS-3UTR CAA 90 bp TTTTTACATTTGTTTAGTCAGCCAGCTTCCTTAAATGGCTTTGCACTTAGCCTGCAGCAGACTCAGCCTTaGCTCCTTCATGCAAATGCT +
Preference number: 5 (lower is better)
Translates to: FLHLFSQPASLNGFALSLQQTQP*LLHANA
Trigger: AGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCTG...CAGGCTAAGTGCAAAGCCATTTAAGGAAGCTGGCTGACTAAACAAATGTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS TCA 90 bp GCATTAGTTACAAGGCTAGGGTTGGCTTTGGTCAGTTTGATGGCATaGATATTATTCTTGATGTTTTTCAGTTTCTTGAAGGAATTCATG +
Preference number: 5 (lower is better)
Translates to: ALVTRLGLALVSLMA*ILFLMFFSFLKEFM
Trigger: CATGAATTCCTTCAAGAAACTGAAAAACATCAAGAATAATATTCATGCCATCAAACTGACCAAAGCCAACCCTAGCCTTGTAACTAATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS GCA 72 bp GAGCTGGCCACCACCCGTGAGATGGTGCAGTCCCTGTaGACCTTGTCAACCTTATCTGCCAGGGCGTGGAGC +
Preference number: 6 (lower is better)
Translates to: ELATTREMVQSL*TLSTLSARAWS
Trigger: GCTCCACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS CAA 90 bp CTGGAGCTGGCCACCACCCGTGAGATGGTGCAGTCCCTGTGCACCTaGTCAACCTTATCTGCCAGGGCGTGGAGCATCCTGATGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LELATTREMVQSLCT*STLSARAWSILMLS
Trigger: GGAGAGCATCAGGATGCTCCACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS CCA 72 bp ACACAGCACTGCTGGAGCTGGCCACCACCCGTGAGATaGTGCAGTCCCTGTGCACCTTGTCAACCTTATCTG +
Preference number: 6 (lower is better)
Translates to: TQHCWSWPPPVR*CSPCAPCQPYL
Trigger: CAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS GCA 72 bp GATGGTGCAGTCCCTGTGCACCTTGTCAACCTTATCTaGCAGGGCGTGGAGCATCCTGATGCTCTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: DGAVPVHLVNLI*QGVEHPDALLK
Trigger: CTTGAGGAGAGCATCAGGATGCTCCACGCCCTGGCAGATAAGGTTGACAAGGTGCACAGGGACTGCACCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS GCA 72 bp GTGCCACGGGTCATTTTGGATCTCTTCTTCATCTTCTaGATCAGTATCAGCTACGGTCTCACCCAGGGCTTC +
Preference number: 6 (lower is better)
Translates to: VPRVILDLFFIF*ISISYGLTQGF
Trigger: GAAGCCCTGGGTGAGACCGTAGCTGATACTGATGCAGAAGATGAAGAAGAGATCCAAAATGACCCGTGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089469.7
ENSMUST00000229434.2
CDS CAA 72 bp ATGCCCTTCATTGTGTCTTTGTTGGTTGGCACCAGCTaGCTGGCTTTAGCTTCAGCAAACACCACACTTACC +
Preference number: 6 (lower is better)
Translates to: MPFIVSLLVGTS*LALASANTTLT
Trigger: GGTAAGTGTGGTGTTTGCTGAAGCTAAAGCCAGCAAGCTGGTGCCAACCAACAAAGACACAATGAAGGGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS GCA 72 bp TCTGCAGCAGACTCAGCCTTTGCTCCTTCATGCAAATaGTTTGAGTCTCCTACAAGGCTAACTATATCCAGC +
Preference number: 6 (lower is better)
Translates to: SAADSAFAPSCK*FESPTRLTISS
Trigger: GCTGGATATAGTTAGCCTTGTAGGAGACTCAAAGCATTTGCATGAAGGAGCAAAGGCTGAGTCTGCTGCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7
CDS CAA 72 bp TCCAAAACTTCTTTCATGCCCTTCATTGTGTCTTTGTaGGTTGGCACCAGCTTGCTGGCTTTAGCTTCAGCA +
Preference number: 6 (lower is better)
Translates to: SKTSFMPFIVSL*VGTSLLALASA
Trigger: TGCTGAAGCTAAAGCCAGCAAGCTGGTGCCAACCAACAAAGACACAATGAAGGGCATGAAAGAAGTTTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089469.7