Pregenerated sensors for APOL11B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091694Ensembl transcript IDs: ENSMUST00000166623.10, ENSMUST00000180949.8, ENSMUST00000181154.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGGTGTGTaGCGCTGTACAATCCTGGGCTACCATCTCCAGTCCCGGTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: PQAVSLFITCCCMGV*RCTILGYHLQSRCP Trigger: GGGACACCGGGACTGGAGATGGTAGCCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR GCA 90 bp | GTCCCGGTGTCCCTCGGGTATGCTCCAGTCACCATTTCTTTAGGCTaGTCTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCT | + |
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Preference number: 1 (lower is better) Translates to: VPVSLGYAPVTISLG*SALNPGFMEDTLPS Trigger: AGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGCAGCCTAAAGAAATGGTGACTGGAGCATACCCGAGGGACACCGGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 90 bp | CTCTTCTCCTGGGATCTCCGGCCTTCTACATTGACCTCACTCTGCTaGGCCAGAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTT | + |
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Preference number: 1 (lower is better) Translates to: LFSWDLRPSTLTSLC*AREIQTSNNLFHGL Trigger: AAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTCTGGCTCAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGAGAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 90 bp | CTGAGCCAGAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTTaGCCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGGT | + |
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Preference number: 1 (lower is better) Translates to: LSQRNSDFQQSFPWT*PQAVSLFITCCCMG Trigger: ACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTCTGGCTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CCA 90 bp | ACAAGCAATGAACTCTATACTATAGTCAATAAAACATCACTACCATaGAACCAGCATCAGTTAAGAAGACCATCACACGTTTCTGGTCTA | + |
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Preference number: 1 (lower is better) Translates to: TSNELYTIVNKTSLP*NQHQLRRPSHVSGL Trigger: TAGACCAGAAACGTGTGATGGTCTTCTTAACTGATGCTGGTTCCATGGTAGTGATGTTTTATTGACTATAGTATAGAGTTCATTGCTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 90 bp | GGCATATTACTAGCTAAAAGCCAATCTGAAAGGCAGCTTACTATATaGTTTCAAATGTATGGCACACTAAACACTTATCAACACACACAG | + |
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Preference number: 1 (lower is better) Translates to: GILLAKSQSERQLTI*FQMYGTLNTYQHTQ Trigger: CTGTGTGTGTTGATAAGTGTTTAGTGTGCCATACATTTGAAATCATATAGTAAGCTGCCTTTCAGATTGGCTTTTAGCTAGTAATATGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGTTGTTAGAGTGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAATCCGGCCTTCTACATTaGCCTCACTCTGCTGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: GVVRVMGADLSAVSTLPESGLLH*PHSAEP Trigger: TGGCTCAGCAGAGTGAGGTCAATGTAGAAGGCCGGA...TTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCACTCTAACAACACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 90 bp | TCCATGGACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTaGCATGGGTGTGTGACGCTGTACAATCCTGGGCTACCATCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: SMDLTSGCFPFYNML*HGCVTLYNPGLPSP Trigger: TGGAGATGGTAGCCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 90 bp | TTTTCCATGGACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTaGTTGCATGGGTGTGTGACGCTGTACAATCCTGGGCTACCATCT | + |
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Preference number: 2 (lower is better) Translates to: FSMDLTSGCFPFYNM*LHGCVTLYNPGLPS Trigger: AGATGGTAGCCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 90 bp | GCTGAGCCAGAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTaGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGG | + |
|
Preference number: 2 (lower is better) Translates to: AEPEKFRLPTIFSMD*TSGCFPFYNMLLHG Trigger: CCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTCTGGCTCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAAGCAATATCATTTCTCAGACAGCTAAGCATTAGCAAGTCCAGCACAAGATTGACCTCACTCTGCTaGGCCAGAGAAATTCAGACT | + |
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Preference number: 2 (lower is better) Translates to: TKAISFLRQLSISKSSTRLTSLC*AREIQT Trigger: AGTCTGAATTTCTCTGGCTCAGCAGAGTGAGGTCAA...TCTTGTGCTGGACTTGCTAATGCTTAGCTGTCTGAGAAATGATATTGCTTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR-3UTR TCA 90 bp | AATAAAACATCACTACCATGGAACCAGCATCAGTTAAGAAGACCATCACACGTTTATGCTTTCCTAATTTaGAGCTGCTCCTGTACCCCC | + |
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Preference number: 2 (lower is better) Translates to: NKTSLPWNQHQLRRPSHVYAFLI*SCSCTP Trigger: GGGGGTACAGGAGCAGCTTCAAATTAGGAAAGCATA...AACGTGTGATGGTCTTCTTAACTGATGCTGGTTCCATGGTAGTGATGTTTTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR GCA 72 bp | TCCCTCGGGTATGCTCCAGTCACCATTTCTTTAGGCTaGTCTGCCCTTAACCCAGGTTTCATGGAAGACACT | + |
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Preference number: 3 (lower is better) Translates to: SLGYAPVTISLG*SALNPGFMEDT Trigger: AGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGCAGCCTAAAGAAATGGTGACTGGAGCATACCCGAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 72 bp | GTTTCCCTTTTTATAACATGTTGTTGCATGGGTGTGTaGCGCTGTACAATCCTGGGCTACCATCTCCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: VSLFITCCCMGV*RCTILGYHLQS Trigger: GGACTGGAGATGGTAGCCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR-3UTR CAA 90 bp | AATAAAACATCACTACCATGGAACCAGCATCAGTTAAGAAGACCATCACACGTTTTTTATAACATGTTGTaGCATGGGTGTGTGACGCTG | + |
|
Preference number: 3 (lower is better) Translates to: NKTSLPWNQHQLRRPSHVFYNML*HGCVTL Trigger: CAGCGTCACACACCCATGCAACAACATGTTATAAAA...AACGTGTGATGGTCTTCTTAACTGATGCTGGTTCCATGGTAGTGATGTTTTATT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAAGCAATATCATTTCTCAGACAGCTAAGCATTAGCAAGTCCAGCACAAGACCTTTTTATAACATGTaGTTGCATGGGTGTGTGACG | + |
|
Preference number: 3 (lower is better) Translates to: TKAISFLRQLSISKSSTRPFYNM*LHGCVT Trigger: CGTCACACACCCATGCAACAACATGTTATAAAAAGG...TCTTGTGCTGGACTTGCTAATGCTTAGCTGTCTGAGAAATGATATTGCTTTAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 72 bp | AGAAATTCAGACTTCCAACAATCTTTTCCATGGACTTaGCCTCAGGCTGTTTCCCTTTTTATAACATGTTGT | + |
|
Preference number: 3 (lower is better) Translates to: RNSDFQQSFPWT*PQAVSLFITCC Trigger: ACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR TCA 72 bp | CTAGCTAAAAGCCAATCTGAAAGGCAGCTTACTATATaGTTTCAAATGTATGGCACACTAAACACTTATCAA | + |
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Preference number: 3 (lower is better) Translates to: LAKSQSERQLTI*FQMYGTLNTYQ Trigger: TTGATAAGTGTTTAGTGTGCCATACATTTGAAATCATATAGTAAGCTGCCTTTCAGATTGGCTTTTAGCTAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GGTGTTGTTAGAGTGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAATGGACCTGGCTCTCCTaGTGGTTTGGATCTGACCCT | + |
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Preference number: 4 (lower is better) Translates to: GVVRVMGADLSAVSTLPEWTWLS*WFGSDP Trigger: AGGGTCAGATCCAAACCATCAGGAGAGCCAGGTCCA...TTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCACTCTAACAACACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GGGCTACCATCTCCAGTCCCGGTGTCCCTCGGGTATGCTCCAGTCACCATTTCTTTCTGCTCAAATTTCTaGAGGTTCTCCTCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLPSPVPVSLGYAPVTISFCSNF*RFSSSL Trigger: CAAGCTGGAGGAGAACCTTCAGAAATTTGAGCAGAA...AGAAATGGTGACTGGAGCATACCCGAGGGACACCGGGACTGGAGATGGTAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GTGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGATCCCCTTTCTGCTGTTCCCTTTaGGGTCTGTCATTTTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: VMGADLSAVSTLPEVGSPFCCSL*GLSFSS Trigger: AGATGAAAATGACAGACCTCAAAGGGAACAGCAGAA...AGGGGATCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | TCCATGGACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGGAGCCACAGAGGATGCTaGGAGTGCCAGACTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: SMDLTSGCFPFYNMLLHGSHRGC*ECQTGP Trigger: GGGGCCAGTCTGGCACTCTCAGCATCCTCTGTGGCT...CCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | ACCATCTCCAGTCCCGGTGTCCCTCGGGTATGCTCCAGTCACCATTTCTTTAGGAAAACTACTCACAGATaGTGTTGCTCCCAGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TISSPGVPRVCSSHHFFRKTTHR*CCSQSH Trigger: GTGGCTCTGGGAGCAACATCATCTGTGAGTAGTTTT...CCTAAAGAAATGGTGACTGGAGCATACCCGAGGGACACCGGGACTGGAGATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GCTCCAGTCACCATTTCTTTAGGCTGCTCTGCCCTTAACCCAGGTTTCATGGAATGGACCTGGCTCTCCTaGTGGTTTGGATCTGACCCT | + |
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Preference number: 4 (lower is better) Translates to: APVTISLGCSALNPGFMEWTWLS*WFGSDP Trigger: AGGGTCAGATCCAAACCATCAGGAGAGCCAGGTCCA...TTCCATGAAACCTGGGTTAAGGGCAGAGCAGCCTAAAGAAATGGTGACTGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | TGCTCTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTATTCTTCCAGTGGATGTaGGGTTCCTGGCCTGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: CSALNPGFMEDTLPSPFLFFQWM*GSWPVL Trigger: GAGCACAGGCCAGGAACCTCACATCCACTGGAAGAA...TAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | GGGCTACCATCTCCAGTCCCGGTGTCCCTCGGGTATGCTCCAGTCACCATTTCTTGTCATTTTCATCTGTaGGATCCTGTGCTAAACGTT | + |
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Preference number: 4 (lower is better) Translates to: GLPSPVPVSLGYAPVTISCHFHL*DPVLNV Trigger: AACGTTTAGCACAGGATCCCACAGATGAAAATGACA...AGAAATGGTGACTGGAGCATACCCGAGGGACACCGGGACTGGAGATGGTAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | ACCATCTCCAGTCCCGGTGTCCCTCGGGTATGCTCCAGTCACCATTTCTTTAGGTGCAGATCCGTTGCTTaGTCACAAGGTCATACACAT | + |
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Preference number: 4 (lower is better) Translates to: TISSPGVPRVCSSHHFFRCRSVA*SQGHTH Trigger: ATGTGTATGACCTTGTGACCAAGCAACGGATCTGCA...CCTAAAGAAATGGTGACTGGAGCATACCCGAGGGACACCGGGACTGGAGATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | AGAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTTGACCTCAGGCTGTTTGCCCCTCTGGTCATCTaGGAGACACCCTGCCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: REIQTSNNLFHGLDLRLFAPLVI*ETPCPE Trigger: CTCTGGGCAGGGTGTCTCCCAGATGACCAGAGGGGC...AAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | AATAAAACATCACTACCATGGAACCAGCATCAGTTAAGAAGACCATCACACGTTAGCCACAGAGGATGCTaGGAGTGCCAGACTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: NKTSLPWNQHQLRRPSHVSHRGC*ECQTGP Trigger: GGGGCCAGTCTGGCACTCTCAGCATCCTCTGTGGCT...AACGTGTGATGGTCTTCTTAACTGATGCTGGTTCCATGGTAGTGATGTTTTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | CTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAATCACTGAGGCAGGTCTaGCTGCAGAGCATTGTACTT | + |
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Preference number: 4 (lower is better) Translates to: LPLTQVSWKTLYLLPSYQSLRQV*LQSIVL Trigger: AAGTACAATGCTCTGCAGTCAGACCTGCCTCAGTGA...TTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | CTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAAAAAACTACTCACAGATaGTGTTGCTCCCAGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LPLTQVSWKTLYLLPSYQKTTHR*CCSQSH Trigger: GTGGCTCTGGGAGCAACATCATCTGTGAGTAGTTTT...TTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAG 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GCTCTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACAGTTTCTTCTTCAACTaGGGAAACTCTCGCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: ALPLTQVSWKTLYLLPSYSFFFN*GNSRRN Trigger: GTTTCTGCGAGAGTTTCCTCAGTTGAAGAAGAAACT...GTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTTGACCTCAGGCTGTTTTTCTTCCAGTGGATGTaGGGTTCCTGGCCTGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: REIQTSNNLFHGLDLRLFFFQWM*GSWPVL Trigger: GAGCACAGGCCAGGAACCTCACATCCACTGGAAGAA...AAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | CCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTCTGCTCAAATTTCTaGAGGTTCTCCTCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: PLTQVSWKTLYLLPSYQPFCSNF*RFSSSL Trigger: CAAGCTGGAGGAGAACCTTCAGAAATTTGAGCAGAA...AGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACGGAGCTTCCTAATGTaGTCCTCAAGTTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: CSALNPGFMEDTLPSPFLRSFLM*SSSFFF Trigger: GAAGAAGAAACTTGAGGACCACATTAGGAAGCTCCG...TAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 72 bp | GACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTaGTTGCATGGGTGTGTGACGCTGTACAATCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: DLTSGCFPFYNM*LHGCVTLYNPG Trigger: CCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | CTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAATTCTGCTGTTCCCTTTaGGGTCTGTCATTTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: LPLTQVSWKTLYLLPSYQFCCSL*GLSFSS Trigger: AGATGAAAATGACAGACCTCAAAGGGAACAGCAGAA...TTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTGTGTGATCTTCAAGAAATCACTGAGGCAGGTCTaGCTGCAGAGCATTGTACTT | + |
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Preference number: 4 (lower is better) Translates to: GRHFTFSLPTNLCVIFKKSLRQV*LQSIVL Trigger: AAGTACAATGCTCTGCAGTCAGACCTGCCTCAGTGA...TTTCTTGAAGATCACACAAAGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 72 bp | TTGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTaGCATGGGTGTGTGACGCTGTACAATCCTGGGCTA | + |
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Preference number: 4 (lower is better) Translates to: LTSGCFPFYNML*HGCVTLYNPGL Trigger: TAGCCCAGGATTGTACAGCGTCACACACCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | TCCATGGACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGGAGTTTCTTCTTCAACTaGGGAAACTCTCGCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: SMDLTSGCFPFYNMLLHGSFFFN*GNSRRN Trigger: GTTTCTGCGAGAGTTTCCTCAGTTGAAGAAGAAACT...CCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | GGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTGTGTGATCTTCAAGAAACTGATGGTTTGGATCTaGCCCTTGAGGGTTTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: GRHFTFSLPTNLCVIFKKLMVWI*PLRVLK Trigger: CTTTAAAACCCTCAAGGGTCAGATCCAAACCATCAG...TTTCTTGAAGATCACACAAAGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | GGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTGTGTGATCTTCAAGAAACGGAGCTTCCTAATGTaGTCCTCAAGTTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GRHFTFSLPTNLCVIFKKRSFLM*SSSFFF Trigger: GAAGAAGAAACTTGAGGACCACATTAGGAAGCTCCG...TTTCTTGAAGATCACACAAAGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | ATGTATGGCACACTAAACACTTATCAACACACACAGATGTTGTTTAGCACAAGCCTGATGGTTTGGATCTaGCCCTTGAGGGTTTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: MYGTLNTYQHTQMLFSTSLMVWI*PLRVLK Trigger: CTTTAAAACCCTCAAGGGTCAGATCCAAACCATCAG...GCTTGTGCTAAACAACATCTGTGTGTGTTGATAAGTGTTTAGTGTGCCATACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | GTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTGTGTGATCTTTGTCATTTTCATCTGTaGGATCCTGTGCTAAACGTT | + |
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Preference number: 4 (lower is better) Translates to: VSWKTLYLLPSYQPLCDLCHFHL*DPVLNV Trigger: AACGTTTAGCACAGGATCCCACAGATGAAAATGACA...AAGATCACACAAAGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CCA 90 bp | GGCACACTAAACACTTATCAACACACACAGATGTTGTTTAGCACAAGCAATGAATGCAGATCCGTTGCTTaGTCACAAGGTCATACACAT | + |
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Preference number: 4 (lower is better) Translates to: GTLNTYQHTQMLFSTSNECRSVA*SQGHTH Trigger: ATGTGTATGACCTTGTGACCAAGCAACGGATCTGCA...TTCATTGCTTGTGCTAAACAACATCTGTGTGTGTTGATAAGTGTTTAGTGTGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR TCA 90 bp | AATAAAACATCACTACCATGGAACCAGCATCAGTTAAGAAGACCATCACACGTTTTTCCTAATGTCCTCTaGGATCTCATTCCAATCCAT | + |
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Preference number: 4 (lower is better) Translates to: NKTSLPWNQHQLRRPSHVFPNVL*DLIPIH Trigger: ATGGATTGGAATGAGATCTCAGAGGACATTAGGAAA...AACGTGTGATGGTCTTCTTAACTGATGCTGGTTCCATGGTAGTGATGTTTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| 3UTR CAA 72 bp | GAGAAATTCAGACTTCCAACAATCTTTTCCATGGACTaGACCTCAGGCTGTTTCCCTTTTTATAACATGTTG | + |
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Preference number: 4 (lower is better) Translates to: EKFRLPTIFSMD*TSGCFPFYNML Trigger: CAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAAAGATTGTTGGAAGTCTGAATTTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS GCA 90 bp | ACCCTGCCCAGAGCTTCTTCCAGTGGATGTGAGGTTCCTGGCCTGTaGTCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: TLPRASSSGCEVPGL*SPARDGPGSPDGLD Trigger: ATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCACATCCACTGGAAGAAGCTCTGGGCAGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 90 bp | AAGGTTCTCCTCCAGCTTGCGAGCCAGGTCCCGCAGTGCTCCACCTaGCTCTGTTTCTCCCCCATCATGCAGATCCGTTGCTTGGTCACA | + |
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Preference number: 5 (lower is better) Translates to: KVLLQLASQVPQCST*LCFSPIMQIRCLVT Trigger: TGTGACCAAGCAACGGATCTGCATGATGGGGGAGAAACAGAGTCAGGTGGAGCACTGCGGGACCTGGCTCGCAAGCTGGAGGAGAACCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CAA 90 bp | GCTCCAGTCACCATTTCTTTAGGCTGCTCTGCCCTTAACCCAGGTTTCATGGAACTTCTCCCTCCTCGCTaGACAACTCTACTGCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: APVTISLGCSALNPGFMELLPPR*TTLLLP Trigger: TGGAAGCAGTAGAGTTGTCAAGCGAGGAGGGAGAAG...TTCCATGAAACCTGGGTTAAGGGCAGAGCAGCCTAAAGAAATGGTGACTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 90 bp | GCTCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTTGGATCTaGCCCTTGAGGGTTTTAAAGGCTTTGACTAAATCTGCAACTGTA | + |
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Preference number: 5 (lower is better) Translates to: APLREMDLALLMVWI*PLRVLKALTKSATV Trigger: TACAGTTGCAGATTTAGTCAAAGCCTTTAAAACCCTCAAGGGTCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CCA 90 bp | ACCGCTCTTTCTGCTGTTCCCTTTGAGGTCTGTCATTTTCATCTGTaGGATCCTGTGCTAAACGTTCCTTCAGAGCATCACGAAGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: TALSAVPFEVCHFHL*DPVLNVPSEHHEVL Trigger: AAGCACTTCGTGATGCTCTGAAGGAACGTTTAGCACAGGATCCCACAGATGAAAATGACAGACCTCAAAGGGAACAGCAGAAAGAGCGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CAA 90 bp | ACCATTTCTTTAGGCTGCTCTGCCCTTAACCCAGGTTTCATGGAAGACACTTTACTTCTCCCTCCTCGCTaGACAACTCTACTGCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: TISLGCSALNPGFMEDTLLLPPR*TTLLLP Trigger: TGGAAGCAGTAGAGTTGTCAAGCGAGGAGGGAGAAG...TAAAGTGTCTTCCATGAAACCTGGGTTAAGGGCAGAGCAGCCTAAAGAAATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CAA 90 bp | GTTTCATGGAAGACACTTTACCTTCTCCCTTCCTACCAACCTTTGTGTGATCTTCATATGACAGTGTCATaGAATCTTCCACAACGGTGG | + |
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Preference number: 5 (lower is better) Translates to: VSWKTLYLLPSYQPLCDLHMTVS*NLPQRW Trigger: CCACCGTTGTGGAAGATTCAATGACACTGTCATATG...AAGATCACACAAAGGTTGGTAGGAAGGGAGAAGGTAAAGTGTCTTCCATGAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CCA 90 bp | TTAAGATCTCTTCAAGAACATTCATGCTGGCTCCAATCAGGTTTCTaGCTTCAGATTCATATGACAGTGTCATTGAATCTTCCACAACGG | + |
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Preference number: 5 (lower is better) Translates to: LRSLQEHSCWLQSGF*LQIHMTVSLNLPQR Trigger: CCGTTGTGGAAGATTCAATGACACTGTCATATGAATCTGAAGCCAGAAACCTGATTGGAGCCAGCATGAATGTTCTTGAAGAGATCTTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CAA 90 bp | GGCACACTAAACACTTATCAACACACACAGATGTTGTTTAGCACAAGCAATGAACATATGACAGTGTCATaGAATCTTCCACAACGGTGG | + |
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Preference number: 5 (lower is better) Translates to: GTLNTYQHTQMLFSTSNEHMTVS*NLPQRW Trigger: CCACCGTTGTGGAAGATTCAATGACACTGTCATATG...TTCATTGCTTGTGCTAAACAACATCTGTGTGTGTTGATAAGTGTTTAGTGTGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS-3UTR CAA 90 bp | TCCATGGACTTGACCTCAGGCTGTTTCCCTTTTTATAACATGTTGTTGCATGGGAGGGTTTTAAAGGCTTaGACTAAATCTGCAACTGTA | + |
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Preference number: 5 (lower is better) Translates to: SMDLTSGCFPFYNMLLHGRVLKA*TKSATV Trigger: TACAGTTGCAGATTTAGTCAAAGCCTTTAAAACCCT...CCCATGCAACAACATGTTATAAAAAGGGAAACAGCCTGAGGTCAAGTCCATGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 72 bp | GGGAGACACCCTGCCCAGAGCTTCTTCCAGTGGATGTaGGGTTCCTGGCCTGTGCTCCCCTGCGAGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: GRHPAQSFFQWM*GSWPVLPCERW Trigger: CCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCACATCCACTGGAAGAAGCTCTGGGCAGGGTGTCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 72 bp | CTCCAGCTTGCGAGCCAGGTCCCGCAGTGCTCCACCTaGCTCTGTTTCTCCCCCATCATGCAGATCCGTTGC | + |
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Preference number: 6 (lower is better) Translates to: LQLASQVPQCST*LCFSPIMQIRC Trigger: GCAACGGATCTGCATGATGGGGGAGAAACAGAGTCAGGTGGAGCACTGCGGGACCTGGCTCGCAAGCTGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS GCA 72 bp | AGAGCTTCTTCCAGTGGATGTGAGGTTCCTGGCCTGTaGTCCCCTGCGAGAGATGGACCTGGCTCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: RASSSGCEVPGL*SPARDGPGSPD Trigger: ATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCACATCCACTGGAAGAAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CCA 72 bp | AACACTCCTGCTCTAATCCTGGCCCCTCTGGTCATCTaGGAGACACCCTGCCCAGAGCTTCTTCCAGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: NTPALILAPLVI*ETPCPELLPVD Trigger: ATCCACTGGAAGAAGCTCTGGGCAGGGTGTCTCCCAGATGACCAGAGGGGCCAGGATTAGAGCAGGAGTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS GCA 72 bp | ACTTCTGCTCAAATTTCTGAAGGTTCTCCTCCAGCTTaGGAGCCAGGTCCCGCAGTGCTCCACCTGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: TSAQISEGSPPA*EPGPAVLHLTL Trigger: CAGAGTCAGGTGGAGCACTGCGGGACCTGGCTCGCAAGCTGGAGGAGAACCTTCAGAAATTTGAGCAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 72 bp | TCTGACTGCAGAGCATTGTACTTCTGCTCAAATTTCTaGAGGTTCTCCTCCAGCTTGCGAGCCAGGTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SDCRALYFCSNF*RFSSSLRARSR Trigger: GCGGGACCTGGCTCGCAAGCTGGAGGAGAACCTTCAGAAATTTGAGCAGAAGTACAATGCTCTGCAGTCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS GCA 72 bp | CGCAGTGCTCCACCTGACTCTGTTTCTCCCCCATCATaGAGATCCGTTGCTTGGTCACAAGGTCATACACAT | + |
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Preference number: 6 (lower is better) Translates to: RSAPPDSVSPPS*RSVAWSQGHTH Trigger: ATGTGTATGACCTTGTGACCAAGCAACGGATCTGCATGATGGGGGAGAAACAGAGTCAGGTGGAGCACTGCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CAA 72 bp | TCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTaGGATCTGACCCTTGAGGGTTTTAAAGGCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: SPARDGPGSPDG*DLTLEGFKGFD Trigger: GTCAAAGCCTTTAAAACCCTCAAGGGTCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CAA 90 bp | GCAGTGCTCCACCTGACTCTGTTTCTCCCCCATCATGCAGATCCGTaGCTTGGTCACAAGGTCATACACATCCCATCCAAGGAACACACT | + |
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Preference number: 6 (lower is better) Translates to: AVLHLTLFLPHHADP*LGHKVIHIPSKEHT Trigger: AGTGTGTTCCTTGGATGGGATGTGTATGACCTTGTGACCAAGCAACGGATCTGCATGATGGGGGAGAAACAGAGTCAGGTGGAGCACTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS TCA 72 bp | CTTCAGAGCATCACGAAGTGCTTCTCCCTCCTCGCTTaGCAACTCTACTGCTTCCACAAATCCATTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: LQSITKCFSLLA*QLYCFHKSIPG Trigger: GCCTGGAATGGATTTGTGGAAGCAGTAGAGTTGTCAAGCGAGGAGGGAGAAGCACTTCGTGATGCTCTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 ENSMUST00000181154.2 |
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| CDS CAA 72 bp | CCTTCAGAGCATCACGAAGTGCTTCTCCCTCCTCGCTaGACAACTCTACTGCTTCCACAAATCCATTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PSEHHEVLLPPR*TTLLLPQIHSR Trigger: CCTGGAATGGATTTGTGGAAGCAGTAGAGTTGTCAAGCGAGGAGGGAGAAGCACTTCGTGATGCTCTGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 ENSMUST00000181154.2 |
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| CDS CAA 72 bp | TTAGAGATGGTGCAGTCCTTGTGCACCTGGTCAAATTaGTCAGCCAGGTCTCGGAGCTTCCTAATGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LEMVQSLCTWSN*SARSRSFLMWS Trigger: GGACCACATTAGGAAGCTCCGAGACCTGGCTGACAAATTTGACCAGGTGCACAAGGACTGCACCATCTCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CAA 72 bp | CACCTGACTCTGTTTCTCCCCCATCATGCAGATCCGTaGCTTGGTCACAAGGTCATACACATCCCATCCAAG | + |
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Preference number: 6 (lower is better) Translates to: HLTLFLPHHADP*LGHKVIHIPSK Trigger: CTTGGATGGGATGTGTATGACCTTGTGACCAAGCAACGGATCTGCATGATGGGGGAGAAACAGAGTCAGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CCA 72 bp | GACTCTGTTTCTCCCCCATCATGCAGATCCGTTGCTTaGTCACAAGGTCATACACATCCCATCCAAGGAACA | + |
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Preference number: 6 (lower is better) Translates to: DSVSPPSCRSVA*SQGHTHPIQGT Trigger: TGTTCCTTGGATGGGATGTGTATGACCTTGTGACCAAGCAACGGATCTGCATGATGGGGGAGAAACAGAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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| CDS CAA 90 bp | CTAAACGTTCCTTCAGAGCATCACGAAGTGCTTCTCCCTCCTCGCTaGACAACTCTACTGCTTCCACAAATCCATTCCAGGCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LNVPSEHHEVLLPPR*TTLLLPQIHSRLHL Trigger: AAGATGGAGCCTGGAATGGATTTGTGGAAGCAGTAGAGTTGTCAAGCGAGGAGGGAGAAGCACTTCGTGATGCTCTGAAGGAACGTTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 ENSMUST00000181154.2 |
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| CDS TCA 72 bp | CGAGAGATGGACCTGGCTCTCCTGATGGTTTGGATCTaGCCCTTGAGGGTTTTAAAGGCTTTGACTAAATCT | + |
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Preference number: 6 (lower is better) Translates to: REMDLALLMVWI*PLRVLKALTKS Trigger: AGATTTAGTCAAAGCCTTTAAAACCCTCAAGGGTCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166623.10 ENSMUST00000180949.8 |
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