Pregenerated sensors for APOL11A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091650Ensembl transcript IDs: ENSMUST00000172191.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTaGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTAAC | + |
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Preference number: 1 (lower is better) Translates to: SLCRPGLPSPVPVSL*YVPATISLGCSALN Trigger: GTTAAGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR TCA 90 bp | CGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGTaGTGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCG | + |
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Preference number: 1 (lower is better) Translates to: RGAPQMFRCSRLLLE*WVLTCLQSPLCRKS Trigger: CGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCACTCTAACAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CCA 90 bp | GGACTTGACCTCAGGCTGTTTCCCTTGTTACAACATGTTGTTGCATaGTTGTGTGTCGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCC | + |
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Preference number: 1 (lower is better) Translates to: GLDLRLFPLLQHVVA*LCVAVQAWAAISSP Trigger: GGGACTGGAGATGGCAGCCCAGGCCTGCACAGCGACACACAACCATGCAACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CCA 90 bp | TCGGATCCCCTTTTAGACTCCAGTTTCCTCTTCTCCTGGGATCTCTaGCCATCTACATTGACCTCGCTCTGCTCAGCCAGAGAAATTCAA | + |
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Preference number: 1 (lower is better) Translates to: SDPLLDSSFLFSWDL*PSTLTSLCSAREIQ Trigger: TTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAGAGATCCCAGGAGAAGAGGAAACTGGAGTCTAAAAGGGGATCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR GCA 90 bp | TTCCTCTTCTCCTGGGATCTCTGGCCATCTACATTGACCTCGCTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCTCTTCCATGG | + |
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Preference number: 1 (lower is better) Translates to: FLFSWDLWPSTLTSL*SAREIQTPQQSLPW Trigger: CCATGGAAGAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAGAGATCCCAGGAGAAGAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR TCA 90 bp | TCAGCCAGAGAAATTCAAACTCCACAACAATCTCTTCCATGGACTTaGCCTCAGGCTGTTTCCCTTGTTACAACATGTTGTTGCATGGTT | + |
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Preference number: 1 (lower is better) Translates to: SAREIQTPQQSLPWT*PQAVSLVTTCCCMV Trigger: AACCATGCAACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR-3UTR GCA 90 bp | ACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGTGATGGGTGCTGACTTGTCTTGTGCAGGCCTGGGCTaGCATCTCCAGTCCCGGTGT | + |
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Preference number: 2 (lower is better) Translates to: TDVQMQQAVVRVMGADLSCAGLG*HLQSRC Trigger: ACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACA...AGACAAGTCAGCACCCATCACTCTAACAACAGCCTGCTGCATCTGAACATCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTCCCGGTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCAAGCATCATGTCCTCTaGACTCTAAGCTGCTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: SSPGVPLVCSSHHFFRLLKHHVL*TLSCLG Trigger: CCCTAAGCAGCTTAGAGTTCAGAGGACATGATGCTT...GAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACACCGGGACTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CAA 90 bp | CTCCACAACAATCTCTTCCATGGACTTGACCTCAGGCTGTTTCCCTaGTTACAACATGTTGTTGCATGGTTGTGTGTCGCTGTGCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: LHNNLFHGLDLRLFP*LQHVVAWLCVAVQA Trigger: GGCCTGCACAGCGACACACAACCATGCAACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATTGTTGTGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR-3UTR TCA 90 bp | CAGCACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGTTTCTGACATTAATGTTTaGAAAAAGTTTCCCCACCCC | + |
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Preference number: 2 (lower is better) Translates to: QHKTSRSPTDVQMQQAVVSDINV*KKFPHP Trigger: GGGGTGGGGAAACTTTTTTCAAACATTAATGTCAGA...AACAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGTGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CAA 90 bp | TTAGACTCCAGTTTCCTCTTCTCCTGGGATCTCTGGCCATCTACATaGACCTCGCTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAA | + |
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Preference number: 2 (lower is better) Translates to: LDSSFLFSWDLWPST*TSLCSAREIQTPQQ Trigger: TTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAGAGATCCCAGGAGAAGAGGAAACTGGAGTCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CCA 72 bp | AGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTaGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RPGLPSPVPVSL*YVPATISLGCS Trigger: AGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR-3UTR CAA 90 bp | TCCAGCACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGCATGTTGTTGCATGGTaGTGTGTCGCTGTGCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: SSTRPRGAPQMFRCSRLLHVVAW*CVAVQA Trigger: GGCCTGCACAGCGACACACAACCATGCAACAACATG...CAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGTGCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR GCA 72 bp | TGTTACAACATGTTGTTGCATGGTTGTGTGTCGCTGTaGAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: CYNMLLHGCVSL*RPGLPSPVPVS Trigger: GGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCGACACACAACCATGCAACAACATGTTGTAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR TCA 72 bp | CCACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGTaGTGGGTGCTGACTTGTCTGCAGTCTCCACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: PQMFRCSRLLLE*WVLTCLQSPLC Trigger: GCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCACTCTAACAACAGCCTGCTGCATCTGAACATCTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CCA 72 bp | TCGGATCCCCTTTTAGACTCCAGTTTCCTCTTCTCCTaGGATCTCTGGCCATCTACATTGACCTCGCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: SDPLLDSSFLFS*DLWPSTLTSLC Trigger: GCAGAGCGAGGTCAATGTAGATGGCCAGAGATCCCAGGAGAAGAGGAAACTGGAGTCTAAAAGGGGATCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR-3UTR CAA 90 bp | ACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGTGATGGGTGCTGACTTGTCTCTCTGGCCATCTACATaGACCTCGCTCTGCTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: TDVQMQQAVVRVMGADLSLWPST*TSLCSA Trigger: GGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAGAG...AGACAAGTCAGCACCCATCACTCTAACAACAGCCTGCTGCATCTGAACATCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR GCA 72 bp | TCCTGGGATCTCTGGCCATCTACATTGACCTCGCTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCT | + |
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Preference number: 3 (lower is better) Translates to: SWDLWPSTLTSL*SAREIQTPQQS Trigger: AGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAGAGATCCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR TCA 72 bp | GAAATTCAAACTCCACAACAATCTCTTCCATGGACTTaGCCTCAGGCTGTTTCCCTTGTTACAACATGTTGT | + |
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Preference number: 3 (lower is better) Translates to: EIQTPQQSLPWT*PQAVSLVTTCC Trigger: ACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATTGTTGTGGAGTTTGAATTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CCA 90 bp | CGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTGGTATGTTCGCTTCTTCCAGTGGATaGGAGGTTCCTGGCCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: RCAGLGCHLQSRCPSGMFASSSG*EVPGLC Trigger: GCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGC...GAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR GCA 90 bp | GCAAGTCCAGCACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGGCCTGTGCTCCCCTaGGAGAGATGGACCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: ASPAQDLEEPHRCSDAAGWPVLP*ERWTWL Trigger: GAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCA...GCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGTGCTGGACTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | GTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTGGTATGTTCCAGCCCGCAGTGCTCCACCTaGCTTTGTTTTTGCCCCATA | + |
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Preference number: 4 (lower is better) Translates to: VQAWAAISSPGVPLVCSSPQCST*LCFCPI Trigger: TATGGGGCAAAAACAAAGTCAGGTGGAGCACTGCGG...GCTGGAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | CGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTGGTATGTTCAAAGCTACTCACAGATaGTGTTGCTCCCAGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: RCAGLGCHLQSRCPSGMFKATHR*CCSQSH Trigger: GTGGCTCTGGGAGCAACATCATCTGTGAGTAGCTTT...GAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | GCATGGTTGTGTGTCGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCTTCTGCTCAAATTCCTaGAGGTTCTCCTCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: AWLCVAVQAWAAISSPGVFCSNS*RFSSSL Trigger: CAAGCTGGAGGAGAACCTTCAGGAATTTGAGCAGAA...GACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCGACACACAACCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CCA 90 bp | AGCACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGTTAGCCCCTCTGGTCATCTaGGGGACAACCTGCCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: STRPRGAPQMFRCSRLLLAPLVI*GTTCPE Trigger: CTCTGGGCAGGTTGTCCCCCAGATGACCAGAGGGGC...TAACAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR GCA 90 bp | CTGGCCATCTACATTGACCTCGCTCTGCTCAGCCAGAGAAATTCAAACTCCACAGAGGTTCCTGGCCTGTaGTCCCCTGCGAGAGATGGA | + |
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Preference number: 4 (lower is better) Translates to: LAIYIDLALLSQRNSNSTEVPGL*SPARDG Trigger: TCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTC...TGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGATGGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CCA 90 bp | CGCTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTCTTCCATGGACTTTGGATGGGAGGTTCCTaGCCTGTGCTCCCCTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: RSAQPEKFKLHNNLFHGLWMGGS*PVLPCE Trigger: CTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCA...AAGTCCATGGAAGAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CAA 72 bp | GACTTGACCTCAGGCTGTTTCCCTTGTTACAACATGTaGTTGCATGGTTGTGTGTCGCTGTGCAGGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: DLTSGCFPCYNM*LHGCVSLCRPG Trigger: CCCAGGCCTGCACAGCGACACACAACCATGCAACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | TCAAACTCCACAACAATCTCTTCCATGGACTTGACCTCAGGCTGTTTCCCTTGTTGGACCTGGCTCTCCTaGTGGTTTGGATCTGATCCT | + |
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Preference number: 4 (lower is better) Translates to: SNSTTISSMDLTSGCFPCWTWLS*WFGSDP Trigger: AGGATCAGATCCAAACCATCAGGAGAGCCAGGTCCA...ACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATTGTTGTGGAGTTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | TCTACATTGACCTCGCTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTCACTGAGGCAGGTCTaGCTGCAGAGCCTTGCACTT | + |
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Preference number: 4 (lower is better) Translates to: STLTSLCSAREIQTPQQSSLRQV*LQSLAL Trigger: AAGTGCAAGGCTCTGCAGTCAGACCTGCCTCAGTGA...AGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR TCA 90 bp | TCTACATTGACCTCGCTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTGTAAACACTCCTTTTTaGAACCTGGCCCCTCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: STLTSLCSAREIQTPQQSVNTPF*NLAPLV Trigger: GACCAGAGGGGCCAGGTTTCAAAAAGGAGTGTTTAC...AGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR GCA 90 bp | ACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGTGATGGGTGCTGACTTGTCTATGGTGCAGTCCTTGTaGACCTGGTCAAATTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: TDVQMQQAVVRVMGADLSMVQSL*TWSNLS Trigger: TGACAAATTTGACCAGGTGCACAAGGACTGCACCAT...AGACAAGTCAGCACCCATCACTCTAACAACAGCCTGCTGCATCTGAACATCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| 3UTR CAA 72 bp | AATCTCTTCCATGGACTTGACCTCAGGCTGTTTCCCTaGTTACAACATGTTGTTGCATGGTTGTGTGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: NLFHGLDLRLFP*LQHVVAWLCVA Trigger: AGCGACACACAACCATGCAACAACATGTTGTAACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GCATGGTTGTGTGTCGCTGTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCTACTCACAGATGATGTaGCTCCCAGAGCCACAGAGG | + |
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Preference number: 5 (lower is better) Translates to: AWLCVAVQAWAAISSPGVYSQMM*LPEPQR Trigger: CCTCTGTGGCTCTGGGAGCAACATCATCTGTGAGTA...GACACCGGGACTGGAGATGGCAGCCCAGGCCTGCACAGCGACACACAACCATGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS GCA 90 bp | AACCTGCCCAGAGCTTCTTCCAGTGGATGGGAGGTTCCTGGCCTGTaGTCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: NLPRASSSGWEVPGL*SPARDGPGSPDGLD Trigger: ATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGCTCTGGGCAGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GTGCAGGCCTGGGCTGCCATCTCCAGTCCCGGTGTCCCTCTGGTATGTTCCAGCTCTGACTGCAGAGCCTaGCACTTCTGCTCAAATTCC | + |
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Preference number: 5 (lower is better) Translates to: VQAWAAISSPGVPLVCSSSDCRA*HFCSNS Trigger: GGAATTTGAGCAGAAGTGCAAGGCTCTGCAGTCAGA...GCTGGAACATACCAGAGGGACACCGGGACTGGAGATGGCAGCCCAGGCCTGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | ACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGTTAGAGAGGTTCTCCTCCAGCTaGCGAGCCAGGTCCCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: TRPRGAPQMFRCSRLLLERFSSS*RARSRS Trigger: ACTGCGGGACCTGGCTCGCAAGCTGGAGGAGAACCT...CTCTAACAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | AGCACAAGACCTCGAGGAGCCCCACAGATGTTCAGATGCAGCAGGCTGTTGTTATGCACCTGGTCAAATTaGTCAGCCAGCTCTCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: STRPRGAPQMFRCSRLLLCTWSN*SASSRS Trigger: GCTCCGAGAGCTGGCTGACAAATTTGACCAGGTGCA...TAACAACAGCCTGCTGCATCTGAACATCTGTGGGGCTCCTCGAGGTCTTGTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | CCCGGTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTGTAAACACTCCTTTTaGAAACCTGGCCCCTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: PGVPLVCSSHHFFRLLCPCKHSF*KPGPSG Trigger: ACCAGAGGGGCCAGGTTTCAAAAAGGAGTGTTTACA...AGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACACCGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS TCA 90 bp | GCTCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTTGGATCTaGTCCTTGAGGGTTTTAAAGGCTTCGGCTAAATCTGCAACTGTA | + |
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Preference number: 5 (lower is better) Translates to: APLREMDLALLMVWI*SLRVLKASAKSATV Trigger: TACAGTTGCAGATTTAGCCGAAGCCTTTAAAACCCTCAAGGATCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTAACGAGATGGTGCAGTCCTaGTGCACCTGGTCAAATTTG | + |
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Preference number: 5 (lower is better) Translates to: VSLWYVPATISLGCSALNEMVQS*CTWSNL Trigger: CAAATTTGACCAGGTGCACAAGGACTGCACCATCTC...GTTAAGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 90 bp | ACCGCTCTTTCTGCTGTTCCCTTTGAGGTCTGTCATTTTCATCTGTaGGATCCTGTGCTAAACGTTCCTTCAGAGCATCACGCAGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: TALSAVPFEVCHFHL*DPVLNVPSEHHAVL Trigger: AAGCACTGCGTGATGCTCTGAAGGAACGTTTAGCACAGGATCCCACAGATGAAAATGACAGACCTCAAAGGGAACAGCAGAAAGAGCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTAACTTTCTGCTGTTCCCTTaGAGGTCTGTCATTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: VSLWYVPATISLGCSALNFLLFP*RSVIFI Trigger: GATGAAAATGACAGACCTCAAAGGGAACAGCAGAAA...GTTAAGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTAACCACCTGACTTTGTTTTaGCCCCATAATACAGATCCT | + |
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Preference number: 5 (lower is better) Translates to: VSLWYVPATISLGCSALNHLTLF*PHNTDP Trigger: AGGATCTGTATTATGGGGCAAAAACAAAGTCAGGTG...GTTAAGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTCTGGTATGTTCCAGCCACCATTTCTTTAGGCTGCTCTGCCCTTAACAACTTGTATGTGATCTaGGGCATGATCTTTAAGATC | + |
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Preference number: 5 (lower is better) Translates to: VSLWYVPATISLGCSALNNLYVI*GMIFKI Trigger: GATCTTAAAGATCATGCCCAAGATCACATACAAGTT...GTTAAGGGCAGAGCAGCCTAAAGAAATGGTGGCTGGAACATACCAGAGGGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS-3UTR CAA 90 bp | TCAAACTCCACAACAATCTCTTCCATGGACTTGACCTCAGGCTGTTTCCCTTGTGTGCTCCACCTGACTTaGTTTTTGCCCCATAATACA | + |
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Preference number: 5 (lower is better) Translates to: SNSTTISSMDLTSGCFPCVLHLT*FLPHNT Trigger: TGTATTATGGGGCAAAAACAAAGTCAGGTGGAGCAC...ACAAGGGAAACAGCCTGAGGTCAAGTCCATGGAAGAGATTGTTGTGGAGTTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 72 bp | CCTGCCCAGAGCTTCTTCCAGTGGATGGGAGGTTCCTaGCCTGTGCTCCCCTGCGAGAGATGGACCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PAQSFFQWMGGS*PVLPCERWTWL Trigger: GAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGCTCTGGGCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 72 bp | CTGGGGGACAACCTGCCCAGAGCTTCTTCCAGTGGATaGGAGGTTCCTGGCCTGTGCTCCCCTGCGAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: LGDNLPRASSSG*EVPGLCSPARD Trigger: ATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGCTCTGGGCAGGTTGTCCCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 72 bp | TCATCTGGGGGACAACCTGCCCAGAGCTTCTTCCAGTaGATGGGAGGTTCCTGGCCTGTGCTCCCCTGCGAG | + |
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Preference number: 6 (lower is better) Translates to: SSGGQPAQSFFQ*MGGSWPVLPCE Trigger: CTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGCTCTGGGCAGGTTGTCCCCCAGATGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS GCA 72 bp | AGAGCTTCTTCCAGTGGATGGGAGGTTCCTGGCCTGTaGTCCCCTGCGAGAGATGGACCTGGCTCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: RASSSGWEVPGL*SPARDGPGSPD Trigger: ATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGAGCACAGGCCAGGAACCTCCCATCCACTGGAAGAAGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS TCA 72 bp | TCTGACTGCAGAGCCTTGCACTTCTGCTCAAATTCCTaGAGGTTCTCCTCCAGCTTGCGAGCCAGGTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SDCRALHFCSNS*RFSSSLRARSR Trigger: GCGGGACCTGGCTCGCAAGCTGGAGGAGAACCTTCAGGAATTTGAGCAGAAGTGCAAGGCTCTGCAGTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 72 bp | TCCCCTGCGAGAGATGGACCTGGCTCTCCTGATGGTTaGGATCTGATCCTTGAGGGTTTTAAAGGCTTCGGC | + |
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Preference number: 6 (lower is better) Translates to: SPARDGPGSPDG*DLILEGFKGFG Trigger: GCCGAAGCCTTTAAAACCCTCAAGGATCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCGCAGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 90 bp | CTAAACGTTCCTTCAGAGCATCACGCAGTGCTTCTCCCTCCTCCCTaGACAACTCTGCTGCTTCCACAAATCCATTCCAGGCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LNVPSEHHAVLLPPP*TTLLLPQIHSRLHL Trigger: AAGATGGAGCCTGGAATGGATTTGTGGAAGCAGCAGAGTTGTCAAGGGAGGAGGGAGAAGCACTGCGTGATGCTCTGAAGGAACGTTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 72 bp | TTAGAGATGGTGCAGTCCTTGTGCACCTGGTCAAATTaGTCAGCCAGCTCTCGGAGCTTCCTAATGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LEMVQSLCTWSN*SASSRSFLMWS Trigger: GGACCACATTAGGAAGCTCCGAGAGCTGGCTGACAAATTTGACCAGGTGCACAAGGACTGCACCATCTCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 72 bp | GCTTGCGAGCCAGGTCCCGCAGTGCTCCACCTGACTTaGTTTTTGCCCCATAATACAGATCCTTTGATTGGT | + |
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Preference number: 6 (lower is better) Translates to: ACEPGPAVLHLT*FLPHNTDPLIG Trigger: ACCAATCAAAGGATCTGTATTATGGGGCAAAAACAAAGTCAGGTGGAGCACTGCGGGACCTGGCTCGCAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS TCA 72 bp | AACTCTCGCAGAAACCGCTCTTTCTGCTGTTCCCTTTaGGGTCTGTCATTTTCATCTGTGGGATCCTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: NSRRNRSFCCSL*GLSFSSVGSCA Trigger: AGCACAGGATCCCACAGATGAAAATGACAGACCTCAAAGGGAACAGCAGAAAGAGCGGTTTCTGCGAGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS TCA 72 bp | CGAGAGATGGACCTGGCTCTCCTGATGGTTTGGATCTaGTCCTTGAGGGTTTTAAAGGCTTCGGCTAAATCT | + |
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Preference number: 6 (lower is better) Translates to: REMDLALLMVWI*SLRVLKASAKS Trigger: AGATTTAGCCGAAGCCTTTAAAACCCTCAAGGATCAGATCCAAACCATCAGGAGAGCCAGGTCCATCTCTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 90 bp | GCAGTGCTCCACCTGACTTTGTTTTTGCCCCATAATACAGATCCTTaGATTGGTTCACAAGGTCATACACATCCCATCCAAGGAGCACAC | + |
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Preference number: 6 (lower is better) Translates to: AVLHLTLFLPHNTDP*IGSQGHTHPIQGAH Trigger: GTGTGCTCCTTGGATGGGATGTGTATGACCTTGTGAACCAATCAAAGGATCTGTATTATGGGGCAAAAACAAAGTCAGGTGGAGCACTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 72 bp | TCTGCTGTTCCCTTTGAGGTCTGTCATTTTCATCTGTaGGATCCTGTGCTAAACGTTCCTTCAGAGCATCAC | + |
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Preference number: 6 (lower is better) Translates to: SAVPFEVCHFHL*DPVLNVPSEHH Trigger: GTGATGCTCTGAAGGAACGTTTAGCACAGGATCCCACAGATGAAAATGACAGACCTCAAAGGGAACAGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CCA 72 bp | CTTCAAGAACGTTCATGCTGGCTCCAATCAGGTTTCTaGCTTCAGATTCATATGACAGTCTCATTGATTCTT | + |
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Preference number: 6 (lower is better) Translates to: LQERSCWLQSGF*LQIHMTVSLIL Trigger: AAGAATCAATGAGACTGTCATATGAATCTGAAGCCAGAAACCTGATTGGAGCCAGCATGAACGTTCTTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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| CDS CAA 72 bp | CACCTGACTTTGTTTTTGCCCCATAATACAGATCCTTaGATTGGTTCACAAGGTCATACACATCCCATCCAA | + |
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Preference number: 6 (lower is better) Translates to: HLTLFLPHNTDP*IGSQGHTHPIQ Trigger: TTGGATGGGATGTGTATGACCTTGTGAACCAATCAAAGGATCTGTATTATGGGGCAAAAACAAAGTCAGGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172191.3 |
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