Pregenerated sensors for APOL10B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050014Ensembl transcript IDs: ENSMUST00000089465.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATAGCATGTTGCAGCACGGGTGTGTGTCCCTGTGCAGGTCTGGACTaGCAGTTCCATTCCCCGTGTTCCTGCATTTTGATCCAGTCACCA | + |
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Preference number: 1 (lower is better) Translates to: IACCSTGVCPCAGLD*QFHSPCSCILIQSP Trigger: TGGTGACTGGATCAAAATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACCTGCACAGGGACACACACCCGTGCTGCAACATGCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR GCA 90 bp | GTTGTTAGAGTGATGAATGCTGACTTGTCTGCAGAGTCTCCACTCTaGCGGAAGTCGGATCCCCTTTTAGACTCCAGGTTCCTCTTCTCC | + |
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Preference number: 1 (lower is better) Translates to: VVRVMNADLSAESPL*RKSDPLLDSRFLFS Trigger: GGAGAAGAGGAACCTGGAGTCTAAAAGGGGATCCGACTTCCGGCAGAGTGGAGACTCTGCAGACAAGTCAGCATTCATCACTCTAACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR GCA 90 bp | TTCCTCTTCTCCTGGGATCTCCGGCCTTCTACATTGACCTCACTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: FLFSWDLRPSTLTSL*SAREIQTPQQSFPW Trigger: CCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGAGAAGAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR TCA 90 bp | TCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTaGCCTCAGGCTGTTTCCCTTGTTATAGCATGTTGCAGCACGGGT | + |
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Preference number: 1 (lower is better) Translates to: SAREIQTPQQSFPWT*PQAVSLVIACCSTG Trigger: ACCCGTGCTGCAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR TCA 90 bp | ATTCACAGGACCACCTTAAGGCTGTGGGAAAGAACTCTGAAAACATaGGTTCAAGAATGTTTCTCAATTCTACAAAATATAAGGATGCAA | + |
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Preference number: 1 (lower is better) Translates to: IHRTTLRLWERTLKT*VQECFSILQNIRMQ Trigger: TTGCATCCTTATATTTTGTAGAATTGAGAAACATTCTTGAACTCATGTTTTCAGAGTTCTTTCCCACAGCCTTAAGGTGGTCCTGTGAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 90 bp | TTTTCCCTGGACTTGACCTCAGGCTGTTTCCCTTGTTATAGCATGTaGCAGCACGGGTGTGTGTCCCTGTGCAGGTCTGGACTGCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: FSLDLTSGCFPCYSM*QHGCVSLCRSGLPV Trigger: AACTGGCAGTCCAGACCTGCACAGGGACACACACCCGTGCTGCAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR-3UTR GCA 90 bp | ATCTCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGGGTGTGTGTCCCTGTaGAGGTCTGGACTGCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: ISGPYPTPLSHHKFLVYLGCVSL*RSGLPV Trigger: AACTGGCAGTCCAGACCTGCACAGGGACACACACCC...TAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAAAGGTTCCTCTTCTCCTaGGATCTCCGGCCTTCTACA | + |
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Preference number: 2 (lower is better) Translates to: SGPYPTPLSHHKFLVYLERFLFS*DLRPST Trigger: TGTAGAAGGCCGGAGATCCCAGGAGAAGAGGAACCT...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 90 bp | TTAGACTCCAGGTTCCTCTTCTCCTGGGATCTCCGGCCTTCTACATaGACCTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAA | + |
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Preference number: 2 (lower is better) Translates to: LDSRFLFSWDLRPST*TSLCSAREIQTPQQ Trigger: TTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGAGAAGAGGAACCTGGAGTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR-3UTR TCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAATCTTTTCCCTGGACTTaGCCTCAGGCTGTTTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: SGPYPTPLSHHKFLVYLESFPWT*PQAVSL Trigger: AAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGA...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 90 bp | CTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTaGACCTCAGGCTGTTTCCCTTGTTATAGCATGTTGCAGCACGGG | + |
|
Preference number: 2 (lower is better) Translates to: LSQRNSNSTTIFSLD*TSGCFPCYSMLQHG Trigger: CCCGTGCTGCAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR-3UTR GCA 90 bp | GATTCACAGGACCACCTTAAGGCTGTGGGAAAGAACTCTGAAAACATGAGTTCACATTCCCCGTGTTCCTaGATTTTGATCCAGTCACCA | + |
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Preference number: 2 (lower is better) Translates to: DSQDHLKAVGKNSENMSSHSPCS*ILIQSP Trigger: TGGTGACTGGATCAAAATGCAGGAACACGGGGAATG...TGAACTCATGTTTTCAGAGTTCTTTCCCACAGCCTTAAGGTGGTCCTGTGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR-3UTR GCA 90 bp | GATTCACAGGACCACCTTAAGGCTGTGGGAAAGAACTCTGAAAACATGAGTTCACCACAGATGTTCAGATaGAGCAGGGTGTTGTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: DSQDHLKAVGKNSENMSSPQMFR*SRVLLE Trigger: CTCTAACAACACCCTGCTGCATCTGAACATCTGTGG...TGAACTCATGTTTTCAGAGTTCTTTCCCACAGCCTTAAGGTGGTCCTGTGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR GCA 72 bp | TGCAGCACGGGTGTGTGTCCCTGTGCAGGTCTGGACTaGCAGTTCCATTCCCCGTGTTCCTGCATTTTGATC | + |
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Preference number: 3 (lower is better) Translates to: CSTGVCPCAGLD*QFHSPCSCILI Trigger: GATCAAAATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACCTGCACAGGGACACACACCCGTGCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CCA 72 bp | CATGTTGCAGCACGGGTGTGTGTCCCTGTGCAGGTCTaGACTGCCAGTTCCATTCCCCGTGTTCCTGCATTT | + |
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Preference number: 3 (lower is better) Translates to: HVAARVCVPVQV*TASSIPRVPAF Trigger: AAATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACCTGCACAGGGACACACACCCGTGCTGCAACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR GCA 72 bp | TGTTATAGCATGTTGCAGCACGGGTGTGTGTCCCTGTaGAGGTCTGGACTGCCAGTTCCATTCCCCGTGTTC | + |
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Preference number: 3 (lower is better) Translates to: CYSMLQHGCVSL*RSGLPVPFPVF Trigger: GAACACGGGGAATGGAACTGGCAGTCCAGACCTGCACAGGGACACACACCCGTGCTGCAACATGCTATAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR TCA 72 bp | GGTTCCTCTTCTCCTGGGATCTCCGGCCTTCTACATTaGCCTCACTCTGCTCAGCCAGAGAAATTCAAACTC | + |
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Preference number: 3 (lower is better) Translates to: GSSSPGISGLLH*PHSAQPEKFKL Trigger: GAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGAGAAGAGGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR GCA 72 bp | TCCTGGGATCTCCGGCCTTCTACATTGACCTCACTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCT | + |
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Preference number: 3 (lower is better) Translates to: SWDLRPSTLTSL*SAREIQTPQQS Trigger: AGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR TCA 72 bp | GAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTaGCCTCAGGCTGTTTCCCTTGTTATAGCATGTTGC | + |
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Preference number: 3 (lower is better) Translates to: EIQTPQQSFPWT*PQAVSLVIACC Trigger: GCAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR TCA 72 bp | AAACAAGGTTTATATTTCAAGAGGAATACCAGAAAGTaGAGGAATTGTTATCTCAGGACCTTATCCCACCCC | + |
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Preference number: 3 (lower is better) Translates to: KQGLYFKRNTRK*RNCYLRTLSHP Trigger: GGGGTGGGATAAGGTCCTGAGATAACAATTCCTTCACTTTCTGGTATTCCTCTTGAAATATAAACCTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR GCA 90 bp | TGTGTGTCCCTGTGCAGGTCTGGACTGCCAGTTCCATTCCCCGTGTTCCTGCATTGCTGCTTCCTCAAATaGCTTCCAGGCTCCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: CVSLCRSGLPVPFPVFLHCCFLK*LPGSIF Trigger: GAAGATGGAGCCTGGAAGGCATTTGAGGAAGCAGCA...ATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACCTGCACAGGGACACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 72 bp | GACTTGACCTCAGGCTGTTTCCCTTGTTATAGCATGTaGCAGCACGGGTGTGTGTCCCTGTGCAGGTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: DLTSGCFPCYSM*QHGCVSLCRSG Trigger: TCCAGACCTGCACAGGGACACACACCCGTGCTGCAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR GCA 90 bp | CTGCCGGAAGTCGGATCCCCTTTTAGACTCCAGGTTCCTCTTCTCCTGGGATCTAACCGCTCATTCTGCTaGTTCCTTTCAGGTCCGTCA | + |
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Preference number: 4 (lower is better) Translates to: LPEVGSPFRLQVPLLLGSNRSFC*FLSGPS Trigger: TGACGGACCTGAAAGGAAGCAGCAGAATGAGCGGTT...AGATCCCAGGAGAAGAGGAACCTGGAGTCTAAAAGGGGATCCGACTTCCGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CCA 90 bp | CTGCCGGAAGTCGGATCCCCTTTTAGACTCCAGGTTCCTCTTCTCCTGGGATCTACACCACATTGGAGATaGTGCAGTCCTTGTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: LPEVGSPFRLQVPLLLGSTPHWR*CSPCAP Trigger: AGGTGCACAAGGACTGCACCATCTCCAATGTGGTGT...AGATCCCAGGAGAAGAGGAACCTGGAGTCTAAAAGGGGATCCGACTTCCGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAATTCTCCTCCAGCTTGTaGGCCAGTTCCCGCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SGPYPTPLSHHKFLVYLEFSSSL*ASSRSA Trigger: AGCACTGCGGGAACTGGCTCACAAGCTGGAGGAGAA...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR GCA 90 bp | GGTCTGGACTGCCAGTTCCATTCCCCGTGTTCCTGCATTTTGATCCAGTCACCAATCTGCTCGAATACCTaGAGCTTCTCCTCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLDCQFHSPCSCILIQSPICSNT*SFSSSL Trigger: CAAGCTGGAGGAGAAGCTGCAGGTATTCGAGCAGAT...TGGTGACTGGATCAAAATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | ATCTCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTACCGCAGTGCTCCAGCTaGCTCTGTTTTTGCCCCATT | + |
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Preference number: 4 (lower is better) Translates to: ISGPYPTPLSHHKFLVYLPQCSS*LCFCPI Trigger: AATGGGGCAAAAACAGAGTCAGCTGGAGCACTGCGG...TAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CCA 90 bp | AGGTCTGGACTGCCAGTTCCATTCCCCGTGTTCCTGCATTTTGATCCAGTCACCCGGAGCTTCCTGATGTaGTCCTCAAGTTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RSGLPVPFPVFLHFDPVTRSFLM*SSSFFF Trigger: GAAGAAGAAACTTGAGGACCACATCAGGAAGCTCCG...GGTGACTGGATCAAAATGCAGGAACACGGGGAATGGAACTGGCAGTCCAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CCA 90 bp | CCAGTTCCATTCCCCGTGTTCCTGCATTTTGATCCAGTCACCATTTCTTTAGGCGGCTCCTCTGGTCATTaGGAGAACACCCTGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: PVPFPVFLHFDPVTISLGGSSGH*ENTLHR Trigger: TCTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCC...GCCTAAAGAAATGGTGACTGGATCAAAATGCAGGAACACGGGGAATGGAACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 72 bp | ATGCAGCAGGGTGTTGTTAGAGTGATGAATGCTGACTaGTCTGCAGAGTCTCCACTCTGCCGGAAGTCGGAT | + |
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Preference number: 4 (lower is better) Translates to: MQQGVVRVMNAD*SAESPLCRKSD Trigger: ATCCGACTTCCGGCAGAGTGGAGACTCTGCAGACAAGTCAGCATTCATCACTCTAACAACACCCTGCTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR GCA 90 bp | CCAGTTCCATTCCCCGTGTTCCTGCATTTTGATCCAGTCACCATTTCTTTAGGCCCACATTGGAGATGGTaGAGTCCTTGTGCACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PVPFPVFLHFDPVTISLGPHWRW*SPCAPG Trigger: ACCAGGTGCACAAGGACTGCACCATCTCCAATGTGG...GCCTAAAGAAATGGTGACTGGATCAAAATGCAGGAACACGGGGAATGGAACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 72 bp | AGGTTCCTCTTCTCCTGGGATCTCCGGCCTTCTACATaGACCTCACTCTGCTCAGCCAGAGAAATTCAAACT | + |
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Preference number: 4 (lower is better) Translates to: RFLFSWDLRPST*TSLCSAREIQT Trigger: AGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGCCGGAGATCCCAGGAGAAGAGGAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | CTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACGAGCTACTCCTTGCTTaGGGTCTGTTGAGCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: LTLLSQRNSNSTTIFSLDELLLA*GLLSTK Trigger: CTTGGTGCTCAACAGACCTCAAGCAAGGAGTAGCTC...GTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | CTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACAGCTCCCTCCTCACTTaGCAATTCTGCTGCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LTLLSQRNSNSTTIFSLDSSLLT*QFCCFL Trigger: GAGGAAGCAGCAGAATTGTCAAGTGAGGAGGGAGCT...GTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | CTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACGGTCTCGGAGCTTCCTaGTGTGGTCCTCAAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: LTLLSQRNSNSTTIFSLDGLGAS*CGPQVS Trigger: AGAAACTTGAGGACCACATCAGGAAGCTCCGAGACC...GTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAACTCATGGCTCGGATGTaGTCCCTGAGGATTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: SGPYPTPLSHHKFLVYLELMARM*SLRILT Trigger: AGTCAAAATCCTCAGGGATCACATCCGAGCCATGAG...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | GCCTTCTACATTGACCTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACATTCTTTCACTGGATGTaGGGTTCCTGGCCTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: AFYIDLTLLSQRNSNSTTFFHWM*GSWPLL Trigger: GAGAAGAGGCCAGGAACCTCACATCCAGTGAAAGAA...TGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR TCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAATCAGTGAGGCAGGTCTaGCTGCAGAGCCTTATATAT | + |
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Preference number: 4 (lower is better) Translates to: SGPYPTPLSHHKFLVYLESVRQV*LQSLIY Trigger: ATATATAAGGCTCTGCAGTCAGACCTGCCTCACTGA...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR GCA 90 bp | TCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTAGAAATTGGGAGAACACCCTaGACAGAGCTTCTTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: SGPYPTPLSHHKFLVYLEIGRTP*TELLSL Trigger: CAGTGAAAGAAGCTCTGTGCAGGGTGTTCTCCCAAT...TTCTAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CCA 90 bp | GATTCACAGGACCACCTTAAGGCTGTGGGAAAGAACTCTGAAAACATGAGTTCAAGGTGGACACCACATTaGAGATGGTGCAGTCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: DSQDHLKAVGKNSENMSSRWTPH*RWCSPC Trigger: ACAAGGACTGCACCATCTCCAATGTGGTGTCCACCT...TGAACTCATGTTTTCAGAGTTCTTTCCCACAGCCTTAAGGTGGTCCTGTGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| 3UTR CAA 72 bp | AGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTaGACCTCAGGCTGTTTCCCTTGTTATAGCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: RNSNSTTIFSLD*TSGCFPCYSML Trigger: CAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS GCA 90 bp | CCTACTGCTCTAAGCCTGGCTCCTCTGGTCATTGGGAGAACACCCTaGACAGAGCTTCTTTCACTGGATGTGAGGTTCCTGGCCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PTALSLAPLVIGRTP*TELLSLDVRFLASS Trigger: AGAAGAGGCCAGGAACCTCACATCCAGTGAAAGAAGCTCTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCAGGCTTAGAGCAGTAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CAA 90 bp | ATCTCAGGACCTTATCCCACCCCGTTAAGCCATCACAAGTTTCTGGTCTACCTATGGCTCCTCTGGTCATaGGGAGAACACCCTGCACAG | + |
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Preference number: 5 (lower is better) Translates to: ISGPYPTPLSHHKFLVYLWLLWS*GEHPAQ Trigger: CTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCA...TAGGTAGACCAGAAACTTGTGATGGCTTAACGGGGTGGGATAAGGTCCTGAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS TCA 90 bp | CCTTGTGCACCTGGTCAAGATGATCAGCCAGGTCTCGGAGCTTCCTaGTGTGGTCCTCAAGTTTCTTCTTCAACTCAGGAAACTCTCGCA | + |
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Preference number: 5 (lower is better) Translates to: PCAPGQDDQPGLGAS*CGPQVSSSTQETLA Trigger: TGCGAGAGTTTCCTGAGTTGAAGAAGAAACTTGAGGACCACATCAGGAAGCTCCGAGACCTGGCTGATCATCTTGACCAGGTGCACAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS GCA 90 bp | AAAGTCATACACATCCCACGCAAGGAACAAACTTGTAAACCCTACTaGTCTAAGCCTGGCTCCTCTGGTCATTGGGAGAACACCCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: KVIHIPRKEQTCKPY*SKPGSSGHWENTLH Trigger: GTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCAGGCTTAGAGCAGTAGGGTTTACAAGTTTGTTCCTTGCGTGGGATGTGTATGACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS TCA 90 bp | TCTCTAGGGAAAATGATGATTCTCGCTCTCCTCATGGCTCGGATGTaGTCCCTGAGGATTTTGACTGCAGGGACTAATCCCACAGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: SLGKMMILALLMARM*SLRILTAGTNPTAV Trigger: TACAGCTGTGGGATTAGTCCCTGCAGTCAAAATCCTCAGGGATCACATCCGAGCCATGAGGAGAGCGAGAATCATCATTTTCCCTAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS-3UTR CAA 90 bp | GCCTTCTACATTGACCTCACTCTGCTCAGCCAGAGAAATTCAAACTCCACAACAAAGGTGGACACCACATaGGAGATGGTGCAGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: AFYIDLTLLSQRNSNSTTKVDTT*EMVQSL Trigger: CAAGGACTGCACCATCTCCAATGTGGTGTCCACCTT...TGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGTGAGGTCAATGTAGAAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS GCA 72 bp | CTAAGCCTGGCTCCTCTGGTCATTGGGAGAACACCCTaGACAGAGCTTCTTTCACTGGATGTGAGGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LSLAPLVIGRTP*TELLSLDVRFL Trigger: CAGGAACCTCACATCCAGTGAAAGAAGCTCTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCAGGCTTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS CCA 72 bp | AAACCCTACTGCTCTAAGCCTGGCTCCTCTGGTCATTaGGAGAACACCCTGCACAGAGCTTCTTTCACTGGA | + |
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Preference number: 6 (lower is better) Translates to: KPYCSKPGSSGH*ENTLHRASFTG Trigger: TCCAGTGAAAGAAGCTCTGTGCAGGGTGTTCTCCCAATGACCAGAGGAGCCAGGCTTAGAGCAGTAGGGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS TCA 72 bp | CTTCAGAGCATCACGAAGTATAGCTCCCTCCTCACTTaGCAATTCTGCTGCTTCCTCAAATGCCTTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: LQSITKYSSLLT*QFCCFLKCLPG Trigger: GCCTGGAAGGCATTTGAGGAAGCAGCAGAATTGTCAAGTGAGGAGGGAGCTATACTTCGTGATGCTCTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS GCA 72 bp | AACTCAGGAAACTCTCGCAGAAACCGCTCATTCTGCTaGTTCCTTTCAGGTCCGTCATTTTCATCTGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: NSGNSRRNRSFC*FLSGPSFSSEG Trigger: GCCCTCAGATGAAAATGACGGACCTGAAAGGAAGCAGCAGAATGAGCGGTTTCTGCGAGAGTTTCCTGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS TCA 72 bp | AAAATGATGATTCTCGCTCTCCTCATGGCTCGGATGTaGTCCCTGAGGATTTTGACTGCAGGGACTAATCCC | + |
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Preference number: 6 (lower is better) Translates to: KMMILALLMARM*SLRILTAGTNP Trigger: GGGATTAGTCCCTGCAGTCAAAATCCTCAGGGATCACATCCGAGCCATGAGGAGAGCGAGAATCATCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS CAA 90 bp | GCAGTGCTCCAGCTGACTCTGTTTTTGCCCCATTATACAGATCTTTaGATTGCTTCACAAAGTCATACACATCCCACGCAAGGAACAAAC | + |
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Preference number: 6 (lower is better) Translates to: AVLQLTLFLPHYTDL*IASQSHTHPTQGTN Trigger: GTTTGTTCCTTGCGTGGGATGTGTATGACTTTGTGAAGCAATCAAAAGATCTGTATAATGGGGCAAAAACAGAGTCAGCTGGAGCACTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS TCA 72 bp | TCAGGCTCCTCAGATCTGTTTTCAAGAATTTTTCCGTaGCAATATCAGCGACTCCATCAACACTTCGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: SGSSDLFSRIFP*QYQRLHQHFEL Trigger: TAGCTCGAAGTGTTGATGGAGTCGCTGATATTGTCACGGAAAAATTCTTGAAAACAGATCTGAGGAGCCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS CAA 72 bp | ACTGCAGGGACTAATCCCACAGCTGTAAATAAAAGCTaGAATGTGATCTTAGACATGATCTTTACAATCTCT | + |
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Preference number: 6 (lower is better) Translates to: TAGTNPTAVNKS*NVILDMIFTIS Trigger: AGAGATTGTAAAGATCATGTCTAAGATCACATTCAAGCTTTTATTTACAGCTGTGGGATTAGTCCCTGCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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| CDS CAA 90 bp | AGGATTTTGACTGCAGGGACTAATCCCACAGCTGTAAATAAAAGCTaGAATGTGATCTTAGACATGATCTTTACAATCTCTTCAAATACA | + |
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Preference number: 6 (lower is better) Translates to: RILTAGTNPTAVNKS*NVILDMIFTISSNT Trigger: TGTATTTGAAGAGATTGTAAAGATCATGTCTAAGATCACATTCAAGCTTTTATTTACAGCTGTGGGATTAGTCCCTGCAGTCAAAATCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089465.6 |
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