Pregenerated sensors for APOL10A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050982Ensembl transcript IDs: ENSMUST00000060551.9
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCCGGAAGTCGGATCCCCTTTTAGACTCCAGGTTCCTCTTCTCCTaGGATCTCCAGCCTTCTACATTGACCTCGCTCTGCTCAGCCAGA | + |
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Preference number: 1 (lower is better) Translates to: CRKSDPLLDSRFLFS*DLQPSTLTSLCSAR Trigger: TCTGGCTGAGCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAACCTGGAGTCTAAAAGGGGATCCGACTTCCGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CCA 90 bp | GAGACCCCACAGATGTTCAGATGCAGCAGGGTGTTGTTAGAGAGATaGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGAT | + |
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Preference number: 1 (lower is better) Translates to: ETPQMFRCSRVLLER*VLTCLQSPLCRKSD Trigger: ATCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTCTAACAACACCCTGCTGCATCTGAACATCTGTGGGGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | CTGAGACATTACCCTGGCCAGCAAGCCACACAGATTGAGAAGACCTaGGAGCCACATACCCAGTCTCCTGTCCCAAAAGTGTTGACTTCA | + |
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Preference number: 1 (lower is better) Translates to: LRHYPGQQATQIEKT*EPHTQSPVPKVLTS Trigger: TGAAGTCAACACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | ACCCATCAATCTGAGACATTACCCTGGCCAGCAAGCCACACAGATTaGGAAGACCTGAGAGCCACATACCCAGTCTCCTGTCCCAAAAGT | + |
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Preference number: 1 (lower is better) Translates to: THQSETLPWPASHTD*EDLRATYPVSCPKS Trigger: ACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTCTCAGATTGATGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | TATAATGTGGGGCTGTACTGTGATGCTGCAGATGGGGAGACTGGATaGGGAAGAGGCATGCGCTTTCATTCCACAACTCAGAGACTGAGC | + |
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Preference number: 1 (lower is better) Translates to: YNVGLYCDAADGETG*GRGMRFHSTTQRLS Trigger: GCTCAGTCTCTGAGTTGTGGAATGAAAGCGCATGCCTCTTCCTCATCCAGTCTCCCCATCTGCAGCATCACAGTACAGCCCCACATTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR GCA 90 bp | TTCCTCTTCTCCTGGGATCTCCAGCCTTCTACATTGACCTCGCTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: FLFSWDLQPSTLTSL*SAREIQTPQQSFPW Trigger: CCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | TCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTaGCCTCAGGCTGTTTCCCTTGTTATAGCATGTTGTAGCACGGGT | + |
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Preference number: 1 (lower is better) Translates to: SAREIQTPQQSFPWT*PQAVSLVIACCSTG Trigger: ACCCGTGCTACAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | AGAAGACCTGAGAGCCACATACCCAGTCTCCTGTCCCAAAAGTGTTaGCTTCATCTCCATTCCATACAGTGTTTGACACCTTCTGTAATC | + |
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Preference number: 1 (lower is better) Translates to: RRPESHIPSLLSQKC*LHLHSIQCLTPSVI Trigger: GATTACAGAAGGTGTCAAACACTGTATGGAATGGAGATGAAGTCAACACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 90 bp | TGTTTGTTTGTTTCTCACATGCATATTGCTAGGTCAAAGTCTATCTaGAAGGTAGCATACTATATGATTTCAAATGTATGGCACACGAAG | + |
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Preference number: 1 (lower is better) Translates to: CLFVSHMHIARSKSI*KVAYYMISNVWHTK Trigger: CTTCGTGTGCCATACATTTGAAATCATATAGTATGCTACCTTTCAGATAGACTTTGACCTAGCAATATGCATGTGAGAAACAAACAAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | AGGGACCGGGACACACCCATGCCTCTATCTCTAAATCCAGGGTCAGAAGCCAAGGGGTGTGTGTCCCTGTaGAGGTCTGGACCGCCATTT | + |
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Preference number: 2 (lower is better) Translates to: RDRDTPMPLSLNPGSEAKGCVSL*RSGPPF Trigger: AAATGGCGGTCCAGACCTGCACAGGGACACACACCC...CTTGGCTTCTGACCCTGGATTTAGAGATAGAGGCATGGGTGTGTCCCGGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR TCA 90 bp | AGGGACCGGGACACACCCATGCCTCTATCTCTAAATCCAGGGTCAGAAGCCAAGTCCAGAGGCTGCAAGTaGCTGCTTTTACTCCACTTT | + |
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Preference number: 2 (lower is better) Translates to: RDRDTPMPLSLNPGSEAKSRGCK*LLLLHF Trigger: AAAGTGGAGTAAAAGCAGTCACTTGCAGCCTCTGGA...CTTGGCTTCTGACCCTGGATTTAGAGATAGAGGCATGGGTGTGTCCCGGTCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | AGGGACCGGGACACACCCATGCCTCTATCTCTAAATCCAGGGTCAGAAGCCAAGACCATTTCTTTAGGCTaGTCTGCCATTAACCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: RDRDTPMPLSLNPGSEAKTISLG*SAINPG Trigger: ACCTGGGTTAATGGCAGAGCAGCCTAAAGAAATGGT...CTTGGCTTCTGACCCTGGATTTAGAGATAGAGGCATGGGTGTGTCCCGGTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | GACATTACCCTGGCCAGCAAGCCACACAGATTGAGAAGACCTGAGAGCCACATACACTCCCTATGTTCCTaGATTTTGCTCCAGCCACCA | + |
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Preference number: 2 (lower is better) Translates to: DITLASKPHRLRRPESHIHSLCS*ILLQPP Trigger: TGGTGGCTGGAGCAAAATGCAGGAACATAGGGAGTG...TATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR TCA 90 bp | TCTCCTGTCCCAAAAGTGTTGACTTCATCTCCATTCCATACAGTGTTTGACACCTCACTGAGGCAGGTCTaGCTGCAGAGCCTTGCACTT | + |
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Preference number: 2 (lower is better) Translates to: SPVPKVLTSSPFHTVFDTSLRQV*LQSLAL Trigger: AAGTGCAAGGCTCTGCAGTCAGACCTGCCTCAGTGA...GGTGTCAAACACTGTATGGAATGGAGATGAAGTCAACACTTTTGGGACAGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | AGGGACCGGGACACACCCATGCCTCTATCTCTAAATCCAGGGTCAGAAGCCAAGTGTTTGTTTCTCACATaGATATTGCTAGGTCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: RDRDTPMPLSLNPGSEAKCLFLT*ILLGQS Trigger: ACTTTGACCTAGCAATATGCATGTGAGAAACAAACA...CTTGGCTTCTGACCCTGGATTTAGAGATAGAGGCATGGGTGTGTCCCGGTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTGTCCCAAAAGTGTTGACTTCATCTCCATTCCATACAGTGTTTGACACCAGGTTCCTCTTCTCCTaGGATCTCCAGCCTTCTACA | + |
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Preference number: 2 (lower is better) Translates to: SPVPKVLTSSPFHTVFDTRFLFS*DLQPST Trigger: TGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAACCT...GGTGTCAAACACTGTATGGAATGGAGATGAAGTCAACACTTTTGGGACAGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR TCA 90 bp | CACAGATTGAGAAGACCTGAGAGCCACATACCCAGTCTCCTGTCCCAAAAGTGTTACCTAGAAATTCCATaGCAGATACATCATAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: HRLRRPESHIPSLLSQKCYLEIP*QIHHKA Trigger: GGCTTTATGATGTATCTGTCATGGAATTTCTAGGTA...ACACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR TCA 90 bp | ACATTAAGAAGATCGGCTAAAACACTATTCAACATGTTCTGTGACAACACAAGAGCAAGCCACACAGATTaGGAAGACCTGAGAGCCACA | + |
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Preference number: 2 (lower is better) Translates to: TLRRSAKTLFNMFCDNTRASHTD*EDLRAT Trigger: TGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGC...TCTTGTGTTGTCACAGAACATGTTGAATAGTGTTTTAGCCGATCTTCTTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR CCA 90 bp | ATGACAGATTGCCTTGATCAGAGTGAGGAATGGGCTGGAACATTCATAGACCCGAATACATCAACAATGTaGTACAGACACAGAAATTCC | + |
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Preference number: 2 (lower is better) Translates to: MTDCLDQSEEWAGTFIDPNTSTM*YRHRNS Trigger: GGAATTTCTGTGTCTGTACCACATTGTTGATGTATT...CGGGTCTATGAATGTTCCAGCCCATTCCTCACTCTGATCAAGGCAATCTGTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR TCA 90 bp | AGAAGATCGGCTAAAACACTATTCAACATGTTCTGTGACAACACAAGAAAGCAGCTGTCCCAAAAGTGTTaGCTTCATCTCCATTCCATA | + |
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Preference number: 2 (lower is better) Translates to: RRSAKTLFNMFCDNTRKQLSQKC*LHLHSI Trigger: TATGGAATGGAGATGAAGTCAACACTTTTGGGACAG...CTGCTTTCTTGTGTTGTCACAGAACATGTTGAATAGTGTTTTAGCCGATCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAGATCGGCTAAAACACTATTCAACATGTTCTGTGACAACACAAGAAAGCAGGAGGCTGCAAGTGACTaGTTTTACTCCACTTTTCAA | + |
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Preference number: 2 (lower is better) Translates to: RRSAKTLFNMFCDNTRKQEAASD*FYSTFQ Trigger: TTGAAAAGTGGAGTAAAAGCAGTCACTTGCAGCCTC...CTGCTTTCTTGTGTTGTCACAGAACATGTTGAATAGTGTTTTAGCCGATCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR GCA 90 bp | CCACAGATGTTGTTTAGCACAAGTAGTGAACTCTATACTGTAGTCAATAATACAACATTGACCTCGCTCTaGTCAGCCAGAGAAATTCAA | + |
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Preference number: 2 (lower is better) Translates to: PQMLFSTSSELYTVVNNTTLTSL*SAREIQ Trigger: TTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGT...TGTATTATTGACTACAGTATAGAGTTCACTACTTGTGCTAAACAACATCTGTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CAA 90 bp | TTTCAAATGTATGGCACACGAAGCACTTGTCAACACCCACAGATGTaGTTTAGCACAAGTAGTGAACTCTATACTGTAGTCAATAATACA | + |
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Preference number: 2 (lower is better) Translates to: FQMYGTRSTCQHPQM*FSTSSELYTVVNNT Trigger: TGTATTATTGACTACAGTATAGAGTTCACTACTTGTGCTAAACAACATCTGTGGGTGTTGACAAGTGCTTCGTGTGCCATACATTTGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR GCA 72 bp | GAGAGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTaGCGGAAGTCGGATCCCCTTTTAGACTCCAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: ERWVLTCLQSPL*RKSDPLLDSRF Trigger: GAACCTGGAGTCTAAAAGGGGATCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | TACCCTGGCCAGCAAGCCACACAGATTGAGAAGACCTaGGAGCCACATACCCAGTCTCCTGTCCCAAAAGTG | + |
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Preference number: 3 (lower is better) Translates to: YPGQQATQIEKT*EPHTQSPVPKV Trigger: CACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | GGGCTGTACTGTGATGCTGCAGATGGGGAGACTGGATaGGGAAGAGGCATGCGCTTTCATTCCACAACTCAG | + |
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Preference number: 3 (lower is better) Translates to: GLYCDAADGETG*GRGMRFHSTTQ Trigger: CTGAGTTGTGGAATGAAAGCGCATGCCTCTTCCTCATCCAGTCTCCCCATCTGCAGCATCACAGTACAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CCA 72 bp | CATGTTGTAGCACGGGTGTGTGTCCCTGTGCAGGTCTaGACCGCCATTTCCACTCCCTATGTTCCTGCATTT | + |
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Preference number: 3 (lower is better) Translates to: HVVARVCVPVQV*TAISTPYVPAF Trigger: AAATGCAGGAACATAGGGAGTGGAAATGGCGGTCCAGACCTGCACAGGGACACACACCCGTGCTACAACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CCA 72 bp | TCGGATCCCCTTTTAGACTCCAGGTTCCTCTTCTCCTaGGATCTCCAGCCTTCTACATTGACCTCGCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: SDPLLDSRFLFS*DLQPSTLTSLC Trigger: GCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAACCTGGAGTCTAAAAGGGGATCCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | TCTGAGACATTACCCTGGCCAGCAAGCCACACAGATTaGGAAGACCTGAGAGCCACATACCCAGTCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: SETLPWPASHTD*EDLRATYPVSC Trigger: ACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTCTCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR CAA 90 bp | GACATTACCCTGGCCAGCAAGCCACACAGATTGAGAAGACCTGAGAGCCACATAATCTTTTCCCTGGACTaGACCTCAGGCTGTTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: DITLASKPHRLRRPESHIIFSLD*TSGCFP Trigger: AGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGAT...TATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | GGTTCCTCTTCTCCTGGGATCTCCAGCCTTCTACATTaGCCTCGCTCTGCTCAGCCAGAGAAATTCAAACTC | + |
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Preference number: 3 (lower is better) Translates to: GSSSPGISSLLH*PRSAQPEKFKL Trigger: GAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | GGACTCTGCCAATACTGGTGGTCCAGAGGCTGCAAGTaGCTGCTTTTACTCCACTTTTCAAGAACAGCCAGT | + |
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Preference number: 3 (lower is better) Translates to: GLCQYWWSRGCK*LLLLHFSRTAS Trigger: ACTGGCTGTTCTTGAAAAGTGGAGTAAAAGCAGTCACTTGCAGCCTCTGGACCACCAGTATTGGCAGAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR GCA 72 bp | TCCTGGGATCTCCAGCCTTCTACATTGACCTCGCTCTaGTCAGCCAGAGAAATTCAAACTCCACAACAATCT | + |
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Preference number: 3 (lower is better) Translates to: SWDLQPSTLTSL*SAREIQTPQQS Trigger: AGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR GCA 72 bp | CTCCATTCCATACAGTGTTTGACACCTTCTGTAATCTaGCTCGACTCTCACTCTGGCTCTCTCCCATTTCCT | + |
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Preference number: 3 (lower is better) Translates to: LHSIQCLTPSVI*LDSHSGSLPFP Trigger: AGGAAATGGGAGAGAGCCAGAGTGAGAGTCGAGGCAGATTACAGAAGGTGTCAAACACTGTATGGAATGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | GAGAGCCACATACCCAGTCTCCTGTCCCAAAAGTGTTaGCTTCATCTCCATTCCATACAGTGTTTGACACCT | + |
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Preference number: 3 (lower is better) Translates to: ESHIPSLLSQKC*LHLHSIQCLTP Trigger: AGGTGTCAAACACTGTATGGAATGGAGATGAAGTCAACACTTTTGGGACAGGAGACTGGGTATGTGGCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR GCA 72 bp | TCTGCCAATACTGGTGGTCCAGAGGCTGCAAGTGACTaGTTTTACTCCACTTTTCAAGAACAGCCAGTTAAC | + |
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Preference number: 3 (lower is better) Translates to: SANTGGPEAASD*FYSTFQEQPVN Trigger: GTTAACTGGCTGTTCTTGAAAAGTGGAGTAAAAGCAGTCACTTGCAGCCTCTGGACCACCAGTATTGGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR CAA 90 bp | ATGACAGATTGCCTTGATCAGAGTGAGGAATGGGCTGGAACATTCATAGACCCGCAACACCCACAGATGTaGTTTAGCACAAGTAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: MTDCLDQSEEWAGTFIDPQHPQM*FSTSSE Trigger: TTCACTACTTGTGCTAAACAACATCTGTGGGTGTTG...CGGGTCTATGAATGTTCCAGCCCATTCCTCACTCTGATCAAGGCAATCTGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR-3UTR CAA 90 bp | AGCAAACCCACTAAAGCAATATCATTTCTCAGACAGCTAAGCATTAGCAAGTCCCTATGTTCCTGCATTTaGCTCCAGCCACCATTTCTT | + |
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Preference number: 3 (lower is better) Translates to: SKPTKAISFLRQLSISKSLCSCI*LQPPFL Trigger: AAGAAATGGTGGCTGGAGCAAAATGCAGGAACATAG...GGACTTGCTAATGCTTAGCTGTCTGAGAAATGATATTGCTTTAGTGGGTTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | GAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTaGCCTCAGGCTGTTTCCCTTGTTATAGCATGTTGT | + |
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Preference number: 3 (lower is better) Translates to: EIQTPQQSFPWT*PQAVSLVIACC Trigger: ACAACATGCTATAACAAGGGAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR TCA 72 bp | TACTCCACTTTTCAAGAACAGCCAGTTAACATTTACTaGACACAGCCTATAAAACATAAGAAGACAGGAACC | + |
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Preference number: 3 (lower is better) Translates to: YSTFQEQPVNIY*TQPIKHKKTGT Trigger: GGTTCCTGTCTTCTTATGTTTTATAGGCTGTGTTCAGTAAATGTTAACTGGCTGTTCTTGAAAAGTGGAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | GACATTACCCTGGCCAGCAAGCCACACAGATTGAGAAGACCTGAGAGCCACATATTCTCCTCCAGCTTGTaGGCCAGGTCCCGCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: DITLASKPHRLRRPESHIFSSSL*ARSRSA Trigger: AGCACTGCGGGACCTGGCTCACAAGCTGGAGGAGAA...TATGTGGCTCTCAGGTCTTCTCAATCTGTGTGGCTTGCTGGCCAGGGTAATGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CCA 90 bp | AGGGACCGGGACACACCCATGCCTCTATCTCTAAATCCAGGGTCAGAAGCCAAGTGGATGCAGGGTTCCTaGCCTGTGTTCCAAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RDRDTPMPLSLNPGSEAKWMQGS*PVFQGQ Trigger: CTGACCTTGGAACACAGGCCAGGAACCCTGCATCCA...CTTGGCTTCTGACCCTGGATTTAGAGATAGAGGCATGGGTGTGTCCCGGTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR GCA 90 bp | GGGTGTGTGTCCCTGTGCAGGTCTGGACCGCCATTTCCACTCCCTATGTTCCTGCGTAAAGTATATTTATaGTGGCTCCAACCAGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: GCVSLCRSGPPFPLPMFLRKVYL*WLQPGV Trigger: GACGCCTGGTTGGAGCCAGCATAAATATACTTTACG...CAGGAACATAGGGAGTGGAAATGGCGGTCCAGACCTGCACAGGGACACACACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGAGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGAACACCACATTGGAGATaGTGCAGCACTTGTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: VREMGADLSAVSTLPEVGTPHWR*CSTCAP Trigger: TGGTGCACAAGTGCTGCACCATCTCCAATGTGGTGT...TCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTCTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGAGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGAAATCTGCTCTTTCTGTaGCTTCCTTTCAGGTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: VREMGADLSAVSTLPEVGNLLFL*LPFRSV Trigger: GACAGACCTGAAAGGAAGCCACAGAAAGAGCAGATT...TCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTCTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CAA 72 bp | AGGTTCCTCTTCTCCTGGGATCTCCAGCCTTCTACATaGACCTCGCTCTGCTCAGCCAGAGAAATTCAAACT | + |
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Preference number: 4 (lower is better) Translates to: RFLFSWDLQPST*TSLCSAREIQT Trigger: AGTTTGAATTTCTCTGGCTGAGCAGAGCGAGGTCAATGTAGAAGGCTGGAGATCCCAGGAGAAGAGGAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | GTTAGAGAGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGACATTCCATAGATCTGTaGCAGAACAAAATCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: VREMGADLSAVSTLPEVGHSIDL*QNKIKE Trigger: CTCCTTGATTTTGTTCTGTCACAGATCTATGGAATG...TCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTCTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | TCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTGACAGAGGGCTTCTGTGCTaGACTCTCCTTCAGAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SAQPEKFKLHNNLFPGLDRGLLC*TLLQSI Trigger: GATGCTCTGAAGGAGAGTTCAGCACAGAAGCCCTCT...GTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | TCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTGACCAAAATCAAGGAGCTTaGGGACTCCTGAAGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: SAQPEKFKLHNNLFPGLDQNQGA*GLLKQH Trigger: GTGCTGCTTCAGGAGTCCTCAAGCTCCTTGATTTTG...GTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR GCA 90 bp | AGCAAACCCACTAAAGCAATATCATTTCTCAGACAGCTAAGCATTAGCAAGTCCCCACATTGGAGATGGTaGAGCACTTGTGCACCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SKPTKAISFLRQLSISKSPHWRW*STCAPG Trigger: ACCTGGTGCACAAGTGCTGCACCATCTCCAATGTGG...GGACTTGCTAATGCTTAGCTGTCTGAGAAATGATATTGCTTTAGTGGGTTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CCA 90 bp | AGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTGACCTCAGGCTGTTTCAAAGTATATTTATGCTaGCTCCAACCAGGCGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RNSNSTTIFSLDLTSGCFKVYLC*LQPGVW Trigger: CCAGACGCCTGGTTGGAGCCAGCATAAATATACTTT...GAAACAGCCTGAGGTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CCA 90 bp | ACATTAAGAAGATCGGCTAAAACACTATTCAACATGTTCTGTGACAACACAAGACAGAGCTTCTTCCAGTaGATGCAGGGTTCCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TLRRSAKTLFNMFCDNTRQSFFQ*MQGSWP Trigger: AGGCCAGGAACCCTGCATCCACTGGAAGAAGCTCTG...TCTTGTGTTGTCACAGAACATGTTGAATAGTGTTTTAGCCGATCTTCTTAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| 3UTR CAA 72 bp | TATGGCACACGAAGCACTTGTCAACACCCACAGATGTaGTTTAGCACAAGTAGTGAACTCTATACTGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: YGTRSTCQHPQM*FSTSSELYTVV Trigger: GACTACAGTATAGAGTTCACTACTTGTGCTAAACAACATCTGTGGGTGTTGACAAGTGCTTCGTGTGCCATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | TCTGCTCAGCCAGAGAAATTCAAACTCCACAACAATCTTTTCCCTGGACTTGACAATATTAATCATATCTaGTGCCATTCCCAGACCCTC | + |
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Preference number: 4 (lower is better) Translates to: SAQPEKFKLHNNLFPGLDNINHI*CHSQTL Trigger: GAGGGTCTGGGAATGGCATCAGATATGATTAATATT...GTCAAGTCCAGGGAAAAGATTGTTGTGGAGTTTGAATTTCTCTGGCTGAGCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR TCA 90 bp | ATGATTTCAAATGTATGGCACACGAAGCACTTGTCAACACCCACAGATGTTGTTATTCATATGACTGTCTaGAACTTTCTCCCACAATGG | + |
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Preference number: 4 (lower is better) Translates to: MISNVWHTKHLSTPTDVVIHMTV*NFLPQW Trigger: CCATTGTGGGAGAAAGTTTCAGACAGTCATATGAAT...AACAACATCTGTGGGTGTTGACAAGTGCTTCGTGTGCCATACATTTGAAATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS GCA 90 bp | ACTGATCATCTGGGGGACACCCTGTCCAGAGCTTCTTCCAGTGGATaGAGGGTTCCTGGCCTGTGTTCCAAGGTCAGAGTTGGATATGGC | + |
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Preference number: 5 (lower is better) Translates to: TDHLGDTLSRASSSG*RVPGLCSKVRVGYG Trigger: GCCATATCCAACTCTGACCTTGGAACACAGGCCAGGAACCCTGCATCCACTGGAAGAAGCTCTGGACAGGGTGTCCCCCAGATGATCAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CCA 90 bp | GGAACTGTAAGCCCTATTTCTCTAATCCTGGCTCTACTGATCATCTaGGGGACACCCTGTCCAGAGCTTCTTCCAGTGGATGCAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: GTVSPISLILALLII*GTPCPELLPVDAGF Trigger: GAACCCTGCATCCACTGGAAGAAGCTCTGGACAGGGTGTCCCCCAGATGATCAGTAGAGCCAGGATTAGAGAAATAGGGCTTACAGTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CAA 90 bp | GTTAGAGAGATGGGTGCTGACTTGTCTGCAGTCTCCACTCTGCCGGAAGTCGGAACAAAATCAAGGAGCTaGAGGACTCCTGAAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: VREMGADLSAVSTLPEVGTKSRS*RTPEAA Trigger: TGCTGCTTCAGGAGTCCTCAAGCTCCTTGATTTTGT...TCCGACTTCCGGCAGAGTGGAGACTGCAGACAAGTCAGCACCCATCTCTCTAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS TCA 90 bp | TGGCTTCCTTTCAGGTCTGTCATTTTCACCAGAGGGCTTCTGTGCTaGACTCTCCTTCAGAGCATCACGCAGTGCAGCTTTCTCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: WLPFRSVIFTRGLLC*TLLQSITQCSFLLT Trigger: AGTGAGGAGAAAGCTGCACTGCGTGATGCTCTGAAGGAGAGTTCAGCACAGAAGCCCTCTGGTGAAAATGACAGACCTGAAAGGAAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS-3UTR CAA 90 bp | CACAGATTGAGAAGACCTGAGAGCCACATACCCAGTCTCCTGTCCCAAAAGTGTGTTCCAAGGTCAGAGTaGGATATGGCTGTCCTGATG | + |
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Preference number: 5 (lower is better) Translates to: HRLRRPESHIPSLLSQKCVPRSE*DMAVLM Trigger: CATCAGGACAGCCATATCCAACTCTGACCTTGGAAC...ACACTTTTGGGACAGGAGACTGGGTATGTGGCTCTCAGGTCTTCTCAATCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS TCA 90 bp | AGCTCTCGGAGCTTACTGATATGGACCTCAAGTTTCTTCTTCAACTaGGGAACCTCTCGCAAAATCTGCTCTTTCTGTGGCTTCCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SSRSLLIWTSSFFFN*GTSRKICSFCGFLS Trigger: TGAAAGGAAGCCACAGAAAGAGCAGATTTTGCGAGAGGTTCCTCAGTTGAAGAAGAAACTTGAGGTCCATATCAGTAAGCTCCGAGAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS GCA 72 bp | CTGGGGGACACCCTGTCCAGAGCTTCTTCCAGTGGATaGAGGGTTCCTGGCCTGTGTTCCAAGGTCAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: LGDTLSRASSSG*RVPGLCSKVRV Trigger: AACTCTGACCTTGGAACACAGGCCAGGAACCCTGCATCCACTGGAAGAAGCTCTGGACAGGGTGTCCCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CCA 72 bp | TCATCTGGGGGACACCCTGTCCAGAGCTTCTTCCAGTaGATGCAGGGTTCCTGGCCTGTGTTCCAAGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: SSGGHPVQSFFQ*MQGSWPVFQGQ Trigger: CTGACCTTGGAACACAGGCCAGGAACCCTGCATCCACTGGAAGAAGCTCTGGACAGGGTGTCCCCCAGATGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CCA 72 bp | CCTGTCCAGAGCTTCTTCCAGTGGATGCAGGGTTCCTaGCCTGTGTTCCAAGGTCAGAGTTGGATATGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PVQSFFQWMQGS*PVFQGQSWIWL Trigger: CAGCCATATCCAACTCTGACCTTGGAACACAGGCCAGGAACCCTGCATCCACTGGAAGAAGCTCTGGACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CAA 72 bp | AGAGTGAGGGACACCACATTGGAGATGGTGCAGCACTaGTGCACCAGGTCAAGTTTGTCAGCCAGCTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RVRDTTLEMVQH*CTRSSLSASSR Trigger: CCGAGAGCTGGCTGACAAACTTGACCTGGTGCACAAGTGCTGCACCATCTCCAATGTGGTGTCCCTCACTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CAA 90 bp | GCAGCACTAAGAGTGAGGGACACCACATTGGAGATGGTGCAGCACTaGTGCACCAGGTCAAGTTTGTCAGCCAGCTCTCGGAGCTTACTG | + |
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Preference number: 6 (lower is better) Translates to: AALRVRDTTLEMVQH*CTRSSLSASSRSLL Trigger: CAGTAAGCTCCGAGAGCTGGCTGACAAACTTGACCTGGTGCACAAGTGCTGCACCATCTCCAATGTGGTGTCCCTCACTCTTAGTGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CAA 90 bp | AGCTTGAGGACTCCTGAAGCAGCACTAAGAGTGAGGGACACCACATaGGAGATGGTGCAGCACTTGTGCACCAGGTCAAGTTTGTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SLRTPEAALRVRDTT*EMVQHLCTRSSLSA Trigger: GGCTGACAAACTTGACCTGGTGCACAAGTGCTGCACCATCTCCAATGTGGTGTCCCTCACTCTTAGTGCTGCTTCAGGAGTCCTCAAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CAA 72 bp | ACTCCTGAAGCAGCACTAAGAGTGAGGGACACCACATaGGAGATGGTGCAGCACTTGTGCACCAGGTCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TPEAALRVRDTT*EMVQHLCTRSS Trigger: ACTTGACCTGGTGCACAAGTGCTGCACCATCTCCAATGTGGTGTCCCTCACTCTTAGTGCTGCTTCAGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CCA 72 bp | AGCCCTATTTCTCTAATCCTGGCTCTACTGATCATCTaGGGGACACCCTGTCCAGAGCTTCTTCCAGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: SPISLILALLII*GTPCPELLPVD Trigger: ATCCACTGGAAGAAGCTCTGGACAGGGTGTCCCCCAGATGATCAGTAGAGCCAGGATTAGAGAAATAGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS CAA 90 bp | CTGAACTCTCCTTCAGAGCATCACGCAGTGCAGCTTTCTCCTCACTaGACAACTCTGCTGTTTCCAAAAATCCATTCCAGGCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LNSPSEHHAVQLSPH*TTLLFPKIHSRLHL Trigger: AAGATGGAGCCTGGAATGGATTTTTGGAAACAGCAGAGTTGTCAAGTGAGGAGAAAGCTGCACTGCGTGATGCTCTGAAGGAGAGTTCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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| CDS TCA 72 bp | AGCTTACTGATATGGACCTCAAGTTTCTTCTTCAACTaGGGAACCTCTCGCAAAATCTGCTCTTTCTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SLLIWTSSFFFN*GTSRKICSFCG Trigger: GCCACAGAAAGAGCAGATTTTGCGAGAGGTTCCTCAGTTGAAGAAGAAACTTGAGGTCCATATCAGTAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060551.9 |
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